Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2744999
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.26
Warning! 506982 characters in sequence are not A, C, G, or T
File 2 of 15
Found at i:261637 original size:18 final size:18
Alignment explanation
Indices: 261568--261638 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
261558 CCTGTCATCC
* *
261568 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
261586 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
261608 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
261628 CTCCTGTCTCT
1 CTCCTGTCTCT
261639 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:264602 original size:476 final size:474
Alignment explanation
Indices: 263288--265225 Score: 2691
Period size: 476 Copynumber: 4.1 Consensus size: 474
263278 GGTTTTCATC
* * * *
263288 AGATTTTTATAAGAATCAATGCCTGCCTTATTTAAGGAATGAACTTTGATTTTTAGGAAAATAGG
1 AGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGG
* * * * **
263353 GCAAAGAAAAGATTTACATGCACAAGAAAATCATCCACATCATTTATCCTAATAAGGAGACTTTG
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATAAGGAGAATAAG
* * ** * *
263418 TTCATAGTGCCTTATCACAAAGTAAATGAAAATCGTTACTACAATCCATGTTTGCCACAATTCAG
131 TTTATAGTGCCTAATCACAAAGTAAATGATGATCATTACTACAATCCATGTTTGCCACAATTGAG
* * * *
263483 GCACGAACTTAGACTTTCCCAAAATTGGGGGGAATAAGGCCTTTCTTACAAAACCAAACCATCAA
196 GCACGAACTTAGACTTTACCAAAATTGGAGGGAATAAAGCATTTCTTACAAAACCAAA-CATCAA
* * * *
263548 TATCTTGTATCCA-TGTGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAGAGAATGAGCATTTG
260 TATCGTGTAT-CATTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAA-AGAATGAGGATTGG
* * * *
263612 TGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATCCTATCAAAAACGGTTGGAAGA
323 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAACAGTTGAAAGA
* ***
263677 AAAGCCTTTCATGCGACATTAAAGCATCAATGTCGCGTATCCTAACAAAAGGAATGTGTTTTTGG
388 AAAGCCTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGG
263742 TTCCAAATCTCGAAAAGAGTGG
453 TTCCAAATCTCGAAAAGAGTGG
* * * *
263764 AGACTGTTACGAGAATCAATGCTAGCCTTATTTAAGGAATGAACTTTGATTTTGAGGAAAATAGG
1 AGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGG
* *
263829 GCAAAGAAAATATTTTCATGCAAAAGAAAATCATCCATATCATTTATCCTAATAA-GAGAATAAG
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATAAGGAGAATAAG
* * * *
263893 TTTATAGTGCCTAATCACAAAGTGAATGATGATCATTACTAGAATCCATGTTTGTCACATTTGAG
131 TTTATAGTGCCTAATCACAAAGTAAATGATGATCATTACTACAATCCATGTTTGCCACAATTGAG
* * *
263958 GCACGAACATAGACTTTACCAAAATTGGCA-GAAAAAAAGCATTTCTTACAAAACCAAACGATCA
196 GCACGAACTTAGACTTTACCAAAATTGG-AGGGAATAAAGCATTTCTTACAAAACCAAAC-ATCA
* * * * *
264022 ATATCGTGTATCATTATGAGAAGACTAAGTTTAGGGTGCCTAATCAAAAAAATAATGACGATTAG
259 ATATCGTGTATCATTATGAGAAGACTAAGTTTATGGTGCCTAATC-CAAAAAGAATGAGGATTGG
* * * * *
264087 TATGAATATTTATGTTTATCTTATTTAAGAGATAAACTTTGGTACTATCAAAAACAGTTGAAAGA
323 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAACAGTTGAAAGA
* * * *
264152 AATGCTTTTCTTGCGACATGAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGG
388 AAAGCCTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGG
264217 TTCCAAATCTCGAAAAGAGTGG
453 TTCCAAATCTCGAAAAGAGTGG
* * *
264239 AGATTGTTATGAGAATCAATGCTTGCCTCATTTAAGGAATGAACTTTGATTTTAAAGAAAATAAG
1 AGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGG
* ** *
264304 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCGTAAGGATGAGAATAAG
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATAAGGAGAATAAG
* * * * * * *
264369 TTTATACTGCCTAATCACAAAGTGATTGATGATCAATACTAGAATCCATGTTTGTCACATTTGAG
131 TTTATAGTGCCTAATCACAAAGTAAATGATGATCATTACTACAATCCATGTTTGCCACAATTGAG
* * * * * *
264434 GTACGAACGTAGACTTTACCAAAATTAGTGGGAAGAAAGCATTTCTTACAAAACCCAAGCATCAA
196 GCACGAACTTAGACTTTACCAAAATTGGAGGGAATAAAGCATTTCTTACAAAA-CCAAACATCAA
** *
264499 TATCGTGTATCATTACAAGAAGACCAAGTTTATGGTGCCTAATCCAAAAAGTAATGAGGATTGGT
260 TATCGTGTATCATTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAG-AATGAGGATTGGT
* *
264564 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGGTACTATCAAAAACAGTTGAGAGAA
324 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAACAGTTGAAAGAA
* * * * **
264629 ATG-TTTCTCTTGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAATGGAATGCATTTTTGG
389 AAGCCTT-TCATGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGG
*
264693 TTCCCAATCTCGAAAAGAGTGG
453 TTCCAAATCTCGAAAAGAGTGG
*
264715 AGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATGGG
1 AGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGG
* * * **
264780 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCTTCCATATCATTTATCCTGATAAGGAGACTTTG
66 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATAAGGAGAATAAG
* * * * *
264845 TTTATAGTGCCTTATCACAATGTAAATGATGATCGTTACTACAATCTATGTTTGCCGCAATTGAG
131 TTTATAGTGCCTAATCACAAAGTAAATGATGATCATTACTACAATCCATGTTTGCCACAATTGAG
* * * *
264910 GCACGAACTTAGACTTTTCCAAAATTGGAGGGAATAATGCCTTTCTTACGAAACCAAACATTCAA
196 GCACGAACTTAGACTTTACCAAAATTGGAGGGAATAAAGCATTTCTTACAAAACCAAACA-TCAA
*
264975 TATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGT
260 TATCGTGTATCATTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AAAAAGAATGAGGA-TTG-
* * *
265040 GTA-G-CTATTCATGTTTGTCTTATTTAAGATACAAACTTTGATTCTATCAAAAACAGTTGGAAG
322 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAACAGTTGAAAG
* *
265103 AAAAGCCTTTCATGCAACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTTTTTTTG
387 AAAAGCCTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTG
* *
265168 GTTCCCAATCTCAAAAAGAGTGG
452 GTTCCAAATCTCGAAAAGAGTGG
265191 AGATTGTTATGAGAATCAATGCTTGCCTTATTTAA
1 AGATTGTTATGAGAATCAATGCTTGCCTTATTTAA
265226 TGATGACAAC
Statistics
Matches: 1300, Mismatches: 148, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
474 3 0.00
475 421 0.32
476 856 0.66
477 17 0.01
478 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
AGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATAAGGAGAATAAG
TTTATAGTGCCTAATCACAAAGTAAATGATGATCATTACTACAATCCATGTTTGCCACAATTGAG
GCACGAACTTAGACTTTACCAAAATTGGAGGGAATAAAGCATTTCTTACAAAACCAAACATCAAT
ATCGTGTATCATTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAGAATGAGGATTGGTAT
GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAACAGTTGAAAGAAAA
GCCTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTC
CAAATCTCGAAAAGAGTGG
Found at i:270256 original size:42 final size:42
Alignment explanation
Indices: 270201--270310 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
270191 TTCTTCTCTC
* *
270201 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCCCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
* *
270243 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
270285 CTCCTCCTATCATCCCTCCTCTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCT
270311 TCTTTCTCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
Found at i:272944 original size:459 final size:459
Alignment explanation
Indices: 271928--276545 Score: 5815
Period size: 459 Copynumber: 9.8 Consensus size: 459
271918 GGTTTTCATC
* * *
271928 ATTTAAGGAGTGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGGAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
271993 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTAATATTGCCTAATCACAACGTGAATGA
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
* * * *
272058 AGATCATTACTAGAATCCATGTTTGGCACATTTAAGGCACGAACACAGACATTACCAAAATTGGT
131 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTA-C--------T
** *
272123 GGGGAGAAAGCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTTTGAGAAGACTAAGTT
187 -----GAAA--TTGGTTACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTT
* * * * * * *
272188 TATGGGGCCTAATCAAAAAAAGAATAAGGATTTGTGTGGCTATTAAAGTTTATCTTATTTAGGAG
245 TATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAG
* * * *
272253 ACAAACTTTGATTTTATCAAAAACGGTCGAATGAAATGCTTTTCTTGCGACATTAAAGCGTC-AT
310 ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAAT
* * *
272317 GTCGCGTATCCTATTGAAAGGAATGGGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGATTGTTA
375 GTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTA
*
272382 TGAGAATCGATGCTTGCCTT
440 TGAGAATCAATGCTTGCCTT
* * *
272402 ATTTAGGGAATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGCAAAGATTTCCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
272467 ATCATCCATATCATTTATCCTAAGGAAGAGAATAAGTTTATACTACCTAATCACAACATGAATGA
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
*
272532 AGATCATTACTAGAATCCACGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAATTGGT
131 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAATTGGT
* *
272597 TACGAAACCAAATCATCAATATCGTGTATGCTTTTGAGTAGACTAAGTTTATGGTGCCTAATCCA
196 TACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCA
* * *
272662 AAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTTTTATTTAAGAGACAGACTTTGATTCCA
261 AAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * *
272727 TCAAAAATGATTGAAAGAAATGCTTTTCTTGCGGCATTAAAGCGTCAATGTCGTGTATCCTAAAG
326 TCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAATG
* * * *
272792 AAAGGAATGTGTTTTTGCATT-CGAATCTCGAAAAGAGTTGAGATTGCTATGAGAATCAATGCTT
391 AAAGGAATGTGTTTTTG-GTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTT
272856 GCCTT
455 GCCTT
*
272861 ATTTAAGGAATGTACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * *
272926 ATCATCCATATCATTTATCCCAA-TAAGTGAATAAGTTTATACTGCCTAATCACAA-AGTGAAT-
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACA-TGAATG
* * * * * *
272988 AATGATCATTACTAGAACCCATGTTCGTCACATTTGTGGCACGAACGTAGACTTTACCAAAATTG
130 AA-GATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTA-C-------
** * * * *
273053 GTGGGAAGAAAGCATTTCTTACAAAACCAAAGCATCAATATCATGTAT-CATTATGCGAAGACTA
186 -T-----G-AA--ATTGGTTACGAAACCAAATCATCAATATCATGTATGC-TTTTGAGAAGACTA
* * * * *
273117 AGTTTATGGTGCCTAATCCAAGAAAGAATGAGGATTAGTATGACTATTCATGTTTGACTTATTTA
241 AGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTA
* * **
273182 AGAGACAAACTTTGGTACTATCAAAAACGGTTGAAAGAAATGCTTTTCTTATGACATTAAAGCAT
306 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCAT
* *
273247 CAATGTCGCATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCAAAAAGAGTGGAGATT
371 CAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATT
273312 GTTATGAGAATCAATGCTTGCCTT
436 GTTATGAGAATCAATGCTTGCCTT
* ** *
273336 ATTTAGGGAATGAACTTTGATTTTAAGGAAAATACAGCAAAGAAAAGATTTTCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
273401 ATCATCCATATCATTTATCTTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGA
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
* * *
273466 AGATCAATACTAGAATCAATGTTTGGCACATTTGAGGCACAAACGTAGACTTTACTGAAATTGGT
131 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAATTGGT
* * *
273531 TACGAAAACAAATCATCAATATCGTGTATGCTTTTGAGCAGACTAAGTTTATGGTGCCTAATCCA
196 TACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCA
** *
273596 AAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGACTGACTTTGATTCCA
261 AAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * *
273661 TAAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGTGTATCCTATTG
326 TCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAATG
*** * *
273726 AAAGGAATGTGTTTTTGGTTTTGAATCTCGAAAAGAGTGGAGATTGTTTTGAGAATCAATGCTTA
391 AAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTG
273791 CCTT
456 CCTT
* * *
273795 ATTTAAGGAATCAACCTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
273860 ATCATCCATATCATTTATCCTATGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
*
273925 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGTACAAACATAGACTTTACTGAAATTGGT
131 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAATTGGT
* *
273990 TACGAAACCAAATCATCAATATCGTGTATGCTTTTGAGCAGACTAAGTTTATGGTGCCTAATCCA
196 TACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCA
* * * *
274055 AAAGAGAATGAGGATTTTTGTGACTATTAATGTTTGTCTTATTTAAGAGACAGACTTTGATTCCA
261 AAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
274120 TCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGTGTATCCTAAAG
326 TCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAATG
* * * *
274185 AAAGGAATGTGTTTTTGCTTTCAAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTA
391 AAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTG
274250 CCTT
456 CCTT
*
274254 ATTTAAGGAATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
274319 ATCATCCATATCATTTATCCTATGGAGGAGAATAAGTTTATACTGCCTAATCACATCATGAATGA
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
*
274384 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGTACAAACATAGACTTTACTGAAATTGGT
131 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAATTGGT
* * * *
274449 TAAGAAGCCAAATCATCAATATCGTGTATGCTTTTGAGCAGACTAAGTTTATGGTGCCTAATCCA
196 TACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCA
* * * *
274514 AAAAGGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGATAGACTTTGATTCCA
261 AAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * *
274579 TCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACATTAAAGCGTCAATGTCGTGTATCCTAAAG
326 TCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAATG
* *** *
274644 AAAGGAATGTGTTTTTGCTTTTGAATCTCGAAAAGAGTTGAGATTGTTATGAGAATCAATGCTTG
391 AAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTG
274709 CCTT
456 CCTT
* *
274713 ATTTAAGGAATGTACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * *
274778 ATCATCCATATCATTTATCCCAA-TAAGTGAATAAGTTTATACTGCCTAATCACAA-AGTGAATG
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACA-TGAATG
* * * * * * *
274841 ATGATCATTACTAGAACCCATGTTCGTCACATTTGTGGCACGAACGTAGACTTTACCAAAATTGG
130 AAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTA-C--------
** * * * *
274906 TGGGAAGAAAGCATTTCTTTCAAAACCAAAGCATCAATATCATGTAT-CATTATGAGAAGATCTA
186 T-----G-AA--ATTGGTTACGAAACCAAATCATCAATATCATGTATGC-TTTTGAGAAGA-CTA
* * * * *
274970 AGTTTATGGTTCCTAGTCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTA
241 AGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTA
* * **
275035 AGAGACAAACTTTGGTACTATCAAAAACGGTTGAAAGAAATGCTTTTCTTATGACATTAAAGCAT
306 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCAT
* *
275100 CAATGTCGCATATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAAGAGTGGAGATT
371 CAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATT
275165 GTTATGAGAATCAATGCTTGCCTT
436 GTTATGAGAATCAATGCTTGCCTT
* *
275189 ATTTAGGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
275254 ATCATCCATATCATTTATCTTAAGGAGGAGAATAAGTTTATACTACCTAATCACAACGTGAATGA
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
* * * *
275319 AGATCAATACTAGAATCAATGTTTGGCACATTTGAGGCACGATCATAGACTTTACCAAAATTGGT
131 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTA-C--------T
** * * * * * *
275384 GGGAAGAAAGCTTTCTTACAAAACCAAAGCGTCAATAGCATGCATGCTTTTGAGAAAACTAAGTT
187 -----GAAA--TTGGTTACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTT
** * * *
275449 TATGGTAACTAATCCAAAAAAGAATGAGGATTTCTGTGACTATTCATGTTTGTCTTATTTAAGTG
245 TATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAG
* * * * * * *
275514 ATAGACTTTAATTCTATCAAAAATGGTTGGAAGAAAAGCCTTTTCTTGCGGCATTAAAGCATCAA
310 ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATG-CTTTTCTTGCGACATTAAAGCATCAA
* * * * *
275579 TGTCACGTATCCCAAGGAAAGGAATGTGTTTTTGGTTCCCAATCTC-AAGAAGAGTGGTGACTGT
374 TGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAA-AAGAGTGGAGATTGT
* *
275643 TAAGAGAATCAATGCTGGCCTT
438 TATGAGAATCAATGCTTGCCTT
* * * ***
275665 ATTTAAGGAATCAACTTTGATTTTAAGGAAAATGGGGCAAGGAAAAGATTTTTGTGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * *
275730 ATCATCCATATCATTTATCCTAA-TAAGAGAATACGTTTATAGTGCCTAATCACAA-AGTGAATG
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACA-TGAATG
* * * * * * *
275793 ATGATCATTACTAGTATCCACGTTTGTCACATTTGAGGCACGAACATAGACTTTTCCGAAATTGG
130 AAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAA-T--
* * * *
275858 TGGGAAGAAAGCATTTCTTACAAAACCAAA-CGATCAATATCGTGTATCCTTATGAGAAGACTAA
192 T-----G---G------TTACGAAACCAAATC-ATCAATATCATGTATGCTTTTGAGAAGACTAA
* * * * * *
275922 GTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGGCTGCTCAATTTTTGTCTCATTTA
242 GTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACT-ATTAATGTTTGTCTTATTTA
*
275987 AGAGACAAACTTTGATTCTATTAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCAT
306 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCAT
* * * *
276052 CAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCTATCTTGAAAAGAGTGGAGACT
371 CAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATT
* *
276117 GTTAGGAGAATCAATGGTTGCCTT
436 GTTATGAGAATCAATGCTTGCCTT
* *
276141 AGTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTCCATGCAAAAGAAA
1 ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
276206 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGA
66 ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
* *
276271 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTTCTAAAATTGGT
131 AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAA-T--T
* *
276336 GGGAAGAAAGCTTTCTTACGAAACCAAACCATCAATATCATATATGCTTTTGAGAAGACTAAGTT
193 -----G---G-----TTACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTT
* * * * * *
276401 TATAGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCATGCTTGTCTTTTTTAAGAG
245 TATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAG
* * * * *
276466 ACAAAGTTTGATTCTATCAAAAACGGTTGGAAGAAATGCATTTCTTGCGGCATCAAAGCATCAAT
310 ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAAT
*
276531 GTCGCATATCCTAAT
375 GTCGCGTATCCTAAT
276546 TGATGAAAAC
Statistics
Matches: 3677, Mismatches: 390, Indels: 153
0.87 0.09 0.04
Matches are distributed among these distances:
457 4 0.00
458 321 0.09
459 1357 0.37
460 8 0.00
461 6 0.00
462 2 0.00
465 1 0.00
467 3 0.00
472 2 0.00
473 5 0.00
474 174 0.05
475 617 0.17
476 922 0.25
477 255 0.07
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (459 bp):
ATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGA
AGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACTGAAATTGGT
TACGAAACCAAATCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCA
AAAAAGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
TCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAATG
AAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTG
CCTT
Found at i:275408 original size:476 final size:475
Alignment explanation
Indices: 273989--276545 Score: 3515
Period size: 476 Copynumber: 5.4 Consensus size: 475
273979 CTGAAATTGG
* * * *
273989 TTACGAAACCAAATCATCAATATCGTGTATGCTTTTGAGCAGACTAAGTTTATGGTGCCTAATCC
1 TTACAAAACCAAAGCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCC
* ** * * *
274054 AAAAGAGAATGAGGATTTTTGTGACTATTAATGTTTGTCTTATTTAAGAGACAGACTTTGATTCC
66 AAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
274119 ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGTGTATCCTAAA
131 ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAAT
* * * *
274184 GAAAGGAATGTGTTTTTGCTTTCAAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTT
196 GAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTT
* * *
274249 ACCTTATTTAAGGAATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
261 GCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
* * *
274314 AGAAAATCATCCATATCATTTATCCTATGGAGGAGAATAAGTTTATACTGCCTAATCACATCA-T
326 AGAAAATCATCCATATCATTTATCCTA-AGAAGAGAATAAGTTTATACTGCCTAATCACA-AAGT
* * **
274378 GAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGTACAAACATAGACTTTACTGAA
389 GAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAAA
*
274443 ATTGGT--TAAG-AAG------
454 ATTGGTGGGAAGAAAGCATTTC
* * *
274456 --------CCAAATCATCAATATCGTGTATGCTTTTGAGCAGACTAAGTTTATGGTGCCTAATCC
1 TTACAAAACCAAAGCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCC
* * * * * *
274513 AAAAAGGAATGAGGATTTGTGTGACTATTAATGTTTGTCTTATTTAAGAGATAGACTTTGATTCC
66 AAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * *
274578 ATCAAAAACGGTTGAAAGAAATGCTTTTCTTACGACATTAAAGCGTCAATGTCGTGTATCCTAAA
131 ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAAT
* *** * *
274643 GAAAGGAATGTGTTTTTGCTTTTGAATCTCGAAAAGAGTTGAGATTGTTATGAGAATCAATGCTT
196 GAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTT
* * *
274708 GCCTTATTTAAGGAATGTACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAA
261 GCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
* * *
274773 AGAAAATCATCCATATCATTTATCCCAATAAGTGAATAAGTTTATACTGCCTAATCACAAAGTGA
326 AGAAAATCATCCATATCATTTATCCTAAGAAGAGAATAAGTTTATACTGCCTAATCACAAAGTGA
* * * * * *
274838 ATGATGATCATTACTAGAACCCATGTTCGTCACATTTGTGGCACGAACGTAGACTTTACCAAAAT
391 ATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAAAAT
274903 TGGTGGGAAGAAAGCATTTC
456 TGGTGGGAAGAAAGCATTTC
* * * *
274923 TTTCAAAACCAAAGCATCAATATCATGTAT-CATTATGAGAAGATCTAAGTTTATGGTTCCTAGT
1 TTACAAAACCAAAGCATCAATATCATGTATGC-TTTTGAGAAGA-CTAAGTTTATGGTGCCTAAT
* * *
274987 CCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGGTA
64 CCAAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** *
275052 CTATCAAAAACGGTTGAAAGAAATGCTTTTCTTATGACATTAAAGCATCAATGTCGCATATCCTA
129 CTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTA
* *
275117 ATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGC
194 ATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGC
*
275182 TTGCCTTATTTAGGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
259 TTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
* * * *
275247 AAAGAAAATCATCCATATCATTTATCTTAAGGAGGAGAATAAGTTTATACTACCTAATCACAACG
324 AAAGAAAATCATCCATATCATTTATCCTAA-GAAGAGAATAAGTTTATACTGCCTAATCACAAAG
* * *
275312 TGAATGAAGATCAATACTAGAATCAATGTTTGGCACATTTGAGGCACGATCATAGACTTTACCAA
388 TGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAA
275377 AATTGGTGGGAAGAAAGC-TTTC
453 AATTGGTGGGAAGAAAGCATTTC
* * * * **
275399 TTACAAAACCAAAGCGTCAATAGCATGCATGCTTTTGAGAAAACTAAGTTTATGGTAACTAATCC
1 TTACAAAACCAAAGCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCC
** * * * *
275464 AAAAAAGAATGAGGATTTCTGTGACTATTCATGTTTGTCTTATTTAAGTGATAGACTTTAATTCT
66 AAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * *
275529 ATCAAAAATGGTTGGAAGAAAAGCCTTTTCTTGCGGCATTAAAGCATCAATGTCACGTATCCCAA
131 ATCAAAAACGGTTGAAAGAAATG-CTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAA
* * *
275594 GGAAAGGAATGTGTTTTTGGTTCCCAATCTC-AAGAAGAGTGGTGACTGTTAAGAGAATCAATGC
195 TGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAA-AAGAGTGGAGACTGTTATGAGAATCAATGC
* * * * **
275658 TGGCCTTATTTAAGGAATCAACTTTGATTTTAAGGAAAATGGGGCAAGGAAAAGATTTTTGTGCA
259 TTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
* * *
275723 AAAGAAAATCATCCATATCATTTATCCTAATAAGAGAATACGTTTATAGTGCCTAATCACAAAGT
324 AAAGAAAATCATCCATATCATTTATCCTAAGAAGAGAATAAGTTTATACTGCCTAATCACAAAGT
* * * * * *
275788 GAATGATGATCATTACTAGTATCCACGTTTGTCACATTTGAGGCACGAACATAGACTTTTCCGAA
389 GAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAAA
275853 ATTGGTGGGAAGAAAGCATTTC
454 ATTGGTGGGAAGAAAGCATTTC
* * *
275875 TTACAAAACCAAA-CGATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATC
1 TTACAAAACCAAAGC-ATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATC
* ** * *
275939 CAAAAAAGAATGAGGATTAGTGTGGCTGCTCAATTTTTGTCTCATTTAAGAGACAAACTTTGATT
65 CAAAAAAGAATGAGGATTAGTGTGACTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATT
*
276004 CTATTAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTA
129 CTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTA
* * * * *
276069 TTGAAAGGAATGTGTTTTTGGTTCCCTATCTTGAAAAGAGTGGAGACTGTTAGGAGAATCAATGG
194 ATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGC
*
276134 TTGCCTTAGTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-TTTTCCATGC
259 TTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGC
* *
276198 AAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAC
323 AAAAGAAAATCATCCATATCATTTATCCTAA-GAAGAGAATAAGTTTATACTGCCTAATCACAAA
* * *
276263 GTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTTCTA
387 GTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCA
276328 AAATTGGTGGGAAGAAAGC-TTTC
452 AAATTGGTGGGAAGAAAGCATTTC
* * * *
276351 TTACGAAACCAAACCATCAATATCATATATGCTTTTGAGAAGACTAAGTTTATAGTGCCTAATCC
1 TTACAAAACCAAAGCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCC
* * * *
276416 AAAAAAGAATGAGGATTAGTGTGACTACTCATGCTTGTCTTTTTTAAGAGACAAAGTTTGATTCT
66 AAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
276481 ATCAAAAACGGTTGGAAGAAATGCATTTCTTGCGGCATCAAAGCATCAATGTCGCATATCCTAAT
131 ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAAT
276546 TGATGAAAAC
Statistics
Matches: 1856, Mismatches: 203, Indels: 54
0.88 0.10 0.03
Matches are distributed among these distances:
457 1 0.00
458 90 0.05
459 331 0.18
460 3 0.00
461 3 0.00
474 1 0.00
475 321 0.17
476 846 0.46
477 260 0.14
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (475 bp):
TTACAAAACCAAAGCATCAATATCATGTATGCTTTTGAGAAGACTAAGTTTATGGTGCCTAATCC
AAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGCGTATCCTAAT
GAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTT
GCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
AGAAAATCATCCATATCATTTATCCTAAGAAGAGAATAAGTTTATACTGCCTAATCACAAAGTGA
ATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAAAAT
TGGTGGGAAGAAAGCATTTC
Found at i:278193 original size:12 final size:11
Alignment explanation
Indices: 278171--278246 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
278161 AGAGAAAGAA
*
278171 GAGAAAGGAGG
1 GAGATAGGAGG
278182 GATGATAGGAGG
1 GA-GATAGGAGG
*
278194 AGAGACAGGA--
1 -GAGATAGGAGG
*
278204 GAGATAGTA--
1 GAGATAGGAGG
278213 GAGATAGGAGG
1 GAGATAGGAGG
278224 GATGATAGGAGG
1 GA-GATAGGAGG
*
278236 AGAGACAGGAG
1 -GAGATAGGAG
278247 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.41, C:0.03, G:0.47, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:278203 original size:24 final size:24
Alignment explanation
Indices: 278170--278255 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
278160 AAGAGAAAGA
*
278170 AGAGAAAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
278194 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
278212 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
278236 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
278256 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:278222 original size:42 final size:42
Alignment explanation
Indices: 278161--278276 Score: 178
Period size: 42 Copynumber: 2.8 Consensus size: 42
278151 TAGCCCTCAA
* *
278161 AGAGAAAGAAGAGAAAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAAAGGAGGGATGATAGGAGGAGAGACAGG
*
278203 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAAAGGAGGGATGATAGGAGGAGAGACAGG
* * *
278245 AGAGATAATAGAGAGAGGAGGGATGACAGGAG
1 AGAGATAGTAGAGAAAGGAGGGATGATAGGAG
278277 AAGGAGAGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAAAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:285739 original size:476 final size:476
Alignment explanation
Indices: 284458--289652 Score: 6689
Period size: 476 Copynumber: 11.0 Consensus size: 476
284448 GTTCTTAATG
*
284458 TTGAAAAGAGTGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGAATGAA-TTTGATT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGAATGAACTTTGATT
*
284522 TTAAGGAATATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT-CATTATCATTTATTTA
65 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA-TATC----ATTTA
* * ** *
284586 TCCTAATGAGGAGACTTTGTTTATAGTGCCTAATCACAAAAT-ATATGAAGATGATTACT-GCAA
125 TCCTAATGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGA-ATGAAGATCATTACTAG-AA
* * * *
284649 TCCATGTTTGCCATAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTT
188 TCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTT
*
284714 CTTATGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATC
253 CTTACGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATC
* * *
284779 CAAAAAAGAATGAGGATTAGTGTGACTACTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTT
318 CAAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* ** *
284844 TATCAAAAACGGTTGGAAGAAATGCTTTTCGTGCGACATCAAAGCGTCAATGTCATGTATCCTTA
383 TATCAAAAACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAA
284909 TGAAAGGAATGTGTTTTTGGTTCCCAATC
448 TGAAAGGAATGTGTTTTTGGTTCCCAATC
* * * * * *
284938 TAG-AAAGAGTGGAGATTGTTACGAGAATCAATGCTCGCCTTATTTAAGGAATCAAATTTTATTT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* * * *
285002 TAAGGAAAATGGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTATCAATATGATTTATCCTAA
66 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * * * *
285067 TGAGAAGAATACGTTTATAGGGCCTAATCAGAAAATGAATGAAGACCATTACTGGAATCCATGTT
131 TGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
285132 TGTCACAATTGAGGCATGAACTTAGACATTACCAAAATTGGTGGGAAGAAAGCCTTTCTTCCAAA
196 TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
* * *
285197 ACCAAACCATCAATATCGTGTATCCTTATGAGAGGACTAAGATTATGGTGTCTAATCCAAAAAAG
261 ACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAG
* * * *
285262 AATAAGGATGAGTGTGACTACTCATGTTTGTCTTATTTAAGAGACAAACTTTCATTCTATCAAAA
326 AATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * *
285327 ACGGTTGGAAGAAATGCTTTCCTTGCGACATCAAAGCATCAATGTCGCGTATCCTAATGAAAGGA
391 ACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAGGA
*
285392 ATGTGTTTTTCGTTCCCAATC
456 ATGTGTTTTTGGTTCCCAATC
* *
285413 -TCAGAAAGAGTGGAGACTGTTACGAGAATCAATGCTTACCTTATTTAAGGAATGAACTTTGATT
1 TTGA-AAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATT
* * * *
285477 TTAAGGAGAATAGGGCAAAGAAAAGACTTCCTTGCAAAAAAAAAATCATCCATATCATTTATCCT
65 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCCATATCATTTATCCT
** * ** *
285542 AGGGAGAAGAATAAGTTTATATTGCCTAATCACAACGTAAATGAAGATCATTACTAGAATCCATG
129 AATGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * *
285607 TTTGGCACATTTGAGGCATGAGCATAGACTTTACCAAAATTGGCGGGAAGGAAG-ATTTCTTACG
194 TTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACG
*
285671 AAACCAAACCATCAATATCGTGTATCCTTATGATAAGACTAAGTTTATGGTGCCTAATCCAAAAA
259 AAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAA
* *
285736 AGAATGAGGATTAGTGTGACTATTCATGTTTGGCTTATTTAAGATACAAACTTTGATTCTATCAA
324 AGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * * * * * * *
285801 AAACGGCTAGAAAAAATGCCTTTCATGTGACATTAAAGCGTCAATGTCGCGTATCCTAATAAAAG
389 AAACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAG
285866 GAATGTGTTTTTGGTTCCCAATC
454 GAATGTGTTTTTGGTTCCCAATC
* * *
285889 TTGAAAAGAGTGGAGACTGTTATGAGAATCAGTGCTTGCCTTATTTAAGGTATGAACTTTGATTT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* *
285954 TAAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAA-AAAATCATCCATATCATTTATCCCAA
66 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * * *
286018 TAAG-AGAATAAGTTTATAGTGCCTAATTACAAATTGAATGATGATCATTACTAGAATCCATGTT
131 TGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * * *
286082 TATCACATTTGGGGCACAAACGTAGACTTTACCGAAATTGGTGGGAAGAAAGCATTTCTTACAAA
196 TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
* * *
286147 ACCAAAGCATCAATATCATGTATGCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAG
261 ACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAG
* ** * *
286212 AATGAGGATTAGTATGACTATTCAAATTTGTCTTATTTAAGAGACAAACTTTGGTACTATCAAAA
326 AATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * ** * *
286277 ATGGTT-GACAAAAATGCTTTGT-TTGCGACACCAACTCGTCAATGTCATATAT-CT--T--AAT
391 ACGGTTGGA-AGAAATGCTTT-TCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAG
*
286335 GAATGTATTTTTGGTTCCCAATC
454 GAATGTGTTTTTGGTTCCCAATC
* * *
286358 TTGAAAAGAG-GGAAGACTGTTACGAGAATCAATTCTTGCCTTATTTAAGGGAA-CAA-TAATGA
1 TTGAAAAGAGTGG-AGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGAATGAACT-TTGA
* * * **
286420 TGTGATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCC
63 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCC
* * * * *
286485 TAATGAGAAGAATACGTTTATAGTACTTAATCGCAAAATGAATGAAGACCATTACTAGAATCCAT
128 TAATGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
286550 GTTTGTCACAATTGAGGCACGAACTTAGACTTTACCGAAATTGGTGGGAAGAAAGCCTTTCTTAC
193 GTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTAC
* *
286615 GAAACCAAACCATCAATATTGTGTATCCTTATAAGAAGACTAAGTTTATGGTGCCTAATCCAAAA
258 GAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAA
* * * *
286680 AAGAATGAGGATTAGTGTGACTACTCGTGTTTGTCTTATTTAAGAGACAAACATTGTTTCTATCA
323 AAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
286745 AAAATGGTTGAAAGATAA-GCTTTTCTTGTGACATCAAATCGTCAATGTCGCATATCCTAATGAA
388 AAAACGGTTGGAAGA-AATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAA
*
286809 AGGAATGTGTTTTTGGTTCCTAATC
452 AGGAATGTGTTTTTGGTTCCCAATC
* * * *
286834 TCGAAAAGTGTGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
*
286899 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATGCTAA
66 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * * ** *
286964 GGAGGAGAATAAGTTTATATTGCCTAATCACAATGTAAATGAAGATCATTACTAGAATCCATGTC
131 TGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT-
* * ** * * *
287029 TGGT-ACATTTGAGACACGAACATAGACTTTACCGGAGTTGGTGGGAAGGAAG-CTTTCTTATGA
195 TTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGA
* * *
287092 AACCAAACCATCAATATCGTGTATCCTTATGAGAAGTCTAAGTTTAAGGTGCCTAATCCAAAAAT
260 AACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAA
* * * *
287157 GAATGAGGATTAATGTGACTATTCATGTTTGTCCTATTTATGAGACAAACTTTGATTATATCAAA
325 GAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * *
287222 AATGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTC-CATATCCTAATGAAAGG
390 AACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAGG
**
287286 AATGTGTTTTTGGTTCAAAATC
455 AATGTGTTTTTGGTTCCCAATC
* *
287308 TTGAAAAGAGTGGAGACTATTACGAGAATTAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* *
287373 TAAGGAAAATAGGGCAAAGAAACGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCGAA
66 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * * * * * *
287438 TAAG-AGAATAAGTTTATACTGCCTAATTACAAAGTGAATGATGATCATAACTAGAATCCATATT
131 TGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * *
287502 TGTCACATTTGAGGCACGAACGTAGACTTTACCAAAATTGGTGGAAAGAAAGCATTTCTT-----
196 TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
* * * *
287562 ---AAAGCATCAATATCGTGTATCATTATGTGAAGACTAAGTTTATGGTGCCTAATCTAAAAAAG
261 ACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAG
* * * * * * *
287624 AATAAGGATTAGTATTACTATTCATGTTTGTCGTATTTAAGAGACAAGCTTTGGTACTATCAAAA
326 AATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * * * * * *
287689 ATGGTTGATAAAAAAAT--TTTTTTTACGACACCAAAGCGTCAATGTCATATATATCTTAATGAA
391 ACGGTTG--GAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTC--ACATATCCTAATGAA
* *
287752 AGGAATGTATTTATGGTTCCCAATC
452 AGGAATGTGTTTTTGGTTCCCAATC
* * *
287777 TTGAAAAGAG-GGAAGACTGTTACGAGAATCTATTCTTGCCTTATTTAAGGGAA-GAA-TAATGA
1 TTGAAAAGAGTGG-AGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGAATGAACT-TTGA
* * * * * * *
287839 TGTGATGGAAGATAGGGCAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCC
63 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCC
* *
287904 TAATGAGAAGAATACA-TTTATAGTGCCTAATCACAAAATGAATGAAGACCGTTACTAGAATCCA
128 TAATGAGAAGAATA-AGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* *
287968 TGTTTGTCACATTTGAGGCACGAACACAAACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA
192 TGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA
* * * * * *
288033 CAAAACCAAAGCTTCAATATCGTATATCCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCTAA
257 CGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAA
** * *
288098 AAAGAATGAGGATTA--GTG--------TGTTTGTCTTATTTTTGAGACAAACTTTAATTCTGTC
322 AAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * * *
288153 AAAAATGGTT-GAAGGAAATGCTTTTTTTACGACATCAAAGCGTCATTGTCATATATCCTGATGA
387 AAAAACGGTTGGAA-GAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGA
* *
288217 AAAGAACGTGTTTTTGGTTCCCAATC
451 AAGGAATGTGTTTTTGGTTCCCAATC
* * * * *
288243 TCGAAAAGAGAGGAGACTGTTGCGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* *
288308 TAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
66 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * * ** * * * * *
288373 TAAGGAGACTTTGTTTATAGTGCCTAATCGCAAAGTAAATGAAGATCATTACTACATTCCATGTT
131 TGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * *
288438 TGCCATAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCCTTCATACGAA
196 TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
*
288503 ACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATTCAAAAAAG
261 ACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAG
* * *
288568 AATGAGGATTAGTGTGACAATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCTGTCAAAA
326 AATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * * * *
288633 ACAGTCGAAAGAAATGCTTTTTTTACGACACCAAA--G-C---GT--CATATCCTAATGAAAGGA
391 ACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAGGA
*
288690 ATGTGTTTTTGGTTCCCAATG
456 ATGTGTTTTTGGTTCCCAATC
* * * * *
288711 TTGAAAAGAGTGGAGACTGTTCCGAGAATCAATCCTTGCCTCATTTAAGGGATGAA-TCTGATTT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* * * *
288775 TAAGGAAAATAGGGCAAAGAAAAGATTTTCTTGCAAAAGAAAATCATCAATAGCATTTATCCTAA
66 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * * * * * *
288840 TAAGGAGACAT-TGTTTATAGTGTCTAATCACAAAGTAAATGAAGATCATTACTACAATCCATGT
131 TGAGAAGA-ATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * * * *
288904 TTGCCATAATTGAGGGACGAACTTAGACTCTACCAAAATTGGTAGGAAGAAAGCCTTTTTTACGA
195 TTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGA
*
288969 AACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTTTGGTGCCTAATCCAAAAAA
260 AACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAA
** *
289034 GAATGAGGATTAGTGTGACTACACATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAA
325 GAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * *
289099 AACGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATATCGCGTATCCTAATGAAAGG
390 AACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAGG
*
289164 AATGTGTTTTTCGTTCCCAATC
455 AATGTGTTTTTGGTTCCCAATC
* * * * * * *
289186 TCGAAAAAAGTAGAGACTATTACGGGAATCAATGCTTTCCTTATTTAAAGAATGAACTTTGATTT
1 TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* *
289251 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACATCCATATCATTTTTCCT-A
66 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * *
289315 TGGAGGAA-AATAAGTTTATACTGCCTAATCACAACATGAATGAATATCATTACTAGAATCCATG
131 T-GA-GAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
289379 TTTGGCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAG-GAGGCTTTCTTACG
194 TTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACG
* * *
289443 AAACCAAACCATCAATATCGTGTATGCTTATGAGAAAACTAAGATTATGGTGCCTAATCCAAAAA
259 AAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAA
* *
289508 AGAATGAGGATTAGTGTGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAA
324 AGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * * * *
289573 AAACGATTGGAAGAAATGCCTTTCATGCGACATTAAAGCATCAACGTCACGTATCCTAATGAAAG
389 AAACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAG
*
289638 GCATGTGTTTTTGGT
454 GAATGTGTTTTTGGT
289653 CCTCAGTCTC
Statistics
Matches: 4121, Mismatches: 514, Indels: 165
0.86 0.11 0.03
Matches are distributed among these distances:
465 6 0.00
466 466 0.11
467 340 0.08
468 166 0.04
469 251 0.06
470 142 0.03
471 267 0.06
472 8 0.00
473 195 0.05
474 363 0.09
475 786 0.19
476 823 0.20
477 138 0.03
478 72 0.02
479 95 0.02
480 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
TTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
TGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
ACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAG
AATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
ACGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACATATCCTAATGAAAGGA
ATGTGTTTTTGGTTCCCAATC
Found at i:290550 original size:15 final size:15
Alignment explanation
Indices: 290512--290550 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
290502 AAAGAATAAA
290512 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
290527 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
290542 AAAAAAAAA
1 AAAAAAAAA
290551 CCAGCATTTG
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:291305 original size:9 final size:9
Alignment explanation
Indices: 291287--291407 Score: 92
Period size: 9 Copynumber: 13.8 Consensus size: 9
291277 TAGCCCTTAA
*
291287 AGAGAAAGG
1 AGAGATAGG
291296 AGAGATAGG
1 AGAGATAGG
*
291305 AGGGAT--G
1 AGAGATAGG
* *
291312 ACAG-GAGG
1 AGAGATAGG
291320 AGAGATAGG
1 AGAGATAGG
*
291329 AGAGATAGC
1 AGAGATAGG
291338 AGAGATAGGAGG
1 AGAGAT---AGG
291350 AGAGATAGG
1 AGAGATAGG
*
291359 AGAGATAGC
1 AGAGATAGG
291368 AGAGATAGG
1 AGAGATAGG
*
291377 AGGGAT--G
1 AGAGATAGG
* *
291384 ATAG-GAGG
1 AGAGATAGG
291392 AGAGATAGG
1 AGAGATAGG
291401 AGAGATA
1 AGAGATA
291408 ATAGAGAGAG
Statistics
Matches: 86, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
7 6 0.07
8 8 0.09
9 64 0.74
12 8 0.09
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (9 bp):
AGAGATAGG
Found at i:291346 original size:42 final size:42
Alignment explanation
Indices: 291287--291435 Score: 160
Period size: 42 Copynumber: 3.8 Consensus size: 42
291277 TAGCCCTTAA
* *
291287 AGAGAAAGGAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
1 AGAGATAGCAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
291329 AGAGATAGC------A-GA--GAT---AGGAGGAGAGATAGG
1 AGAGATAGCAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
*
291359 AGAGATAGCAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGCAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
** *
291401 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGCAGAGATAGGAGGGATGACAGGAGGAG
291436 GAGAAAAGAA
Statistics
Matches: 89, Mismatches: 6, Indels: 24
0.75 0.05 0.20
Matches are distributed among these distances:
30 24 0.27
33 3 0.03
35 2 0.02
36 2 0.02
37 2 0.02
39 3 0.03
42 53 0.60
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGCAGAGATAGGAGGGATGACAGGAGGAGAGATAGG
Found at i:291350 original size:30 final size:30
Alignment explanation
Indices: 291287--291390 Score: 138
Period size: 30 Copynumber: 3.4 Consensus size: 30
291277 TAGCCCTTAA
* * *
291287 AGAGAAAGGAGAGATAGGAGGGATGACAGGAGG
1 AGAGATAGGAGAGATAGCA--GA-GATAGGAGG
291320 AGAGATAGGAGAGATAGCAGAGATAGGAGG
1 AGAGATAGGAGAGATAGCAGAGATAGGAGG
291350 AGAGATAGGAGAGATAGCAGAGATAGGAGG
1 AGAGATAGGAGAGATAGCAGAGATAGGAGG
291380 -GATGATAGGAG
1 AGA-GATAGGAG
291391 GAGAGATAGG
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
29 2 0.03
30 46 0.69
31 2 0.03
33 17 0.25
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.10
Consensus pattern (30 bp):
AGAGATAGGAGAGATAGCAGAGATAGGAGG
Found at i:291383 original size:72 final size:72
Alignment explanation
Indices: 291287--291421 Score: 216
Period size: 72 Copynumber: 1.9 Consensus size: 72
291277 TAGCCCTTAA
* * *
291287 AGAGAAAGGAGAGATAGGAGGGATGACAGGAGGAGAGATAGGAGAGATAGCAGAGATAGGAGGAG
1 AGAGAAAGCAGAGATAGGAGGGATGACAGGAGGAGAGATAGGAGAGATAACAGAGAGAGGAGGAG
291352 AGATAGG
66 AGATAGG
* * *
291359 AGAGATAGCAGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGG
1 AGAGAAAGCAGAGATAGGAGGGATGACAGGAGGAGAGATAGGAGAGATAACAGAGAGAGGAGG
291422 GATGACAGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (72 bp):
AGAGAAAGCAGAGATAGGAGGGATGACAGGAGGAGAGATAGGAGAGATAACAGAGAGAGGAGGAG
AGATAGG
Found at i:291411 original size:12 final size:12
Alignment explanation
Indices: 291371--291416 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
291361 AGATAGCAGA
*
291371 GATAGGAGGGAT
1 GATAGGAGAGAT
291383 GATAGGAGGAGA-
1 GATAGGA-GAGAT
291395 GATAGGAGAGAT
1 GATAGGAGAGAT
*
291407 AATA-GAGAGA
1 GATAGGAGAGA
291417 GGAGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:298271 original size:474 final size:474
Alignment explanation
Indices: 296234--300017 Score: 5363
Period size: 474 Copynumber: 8.0 Consensus size: 474
296224 GTTGTCATCA
* * *
296234 AAAAGAGTGGAGACT-TTAAGAGAATCAATGCTTGTCTTATTTAAGGAATTAAATTTGAATTTAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
* * *
296298 GGAAAATAGGGTAGAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * *
296363 GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTGCAAGAATCCATATTTGT
131 GAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
*
296428 CACAATTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
196 CACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* * * *
296493 AAACCATCAATATTGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCGAAAAACAAG
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAG
* * *
296558 GAGGATTAGTGTGACTAATTATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGC
326 GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGT
** *
296623 T-AGAAGAAATGCTTTTCTTGCGACATCAAAGTGTCAATGTTGTGTATCCTAATGAAAGGAATGT
391 TGA-AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGAGTATCCTAATGAAAGGAATGT
296687 GTTTTTCGTTCCCAATCTCG
455 GTTTTTCGTTCCCAATCTCG
* * * *
296707 AAAAGAGTGAAGACTGTTACGAGAATCAATGCTTTCCTTATTTAAGGAATGAACTTTGATTTTAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
* * * *
296772 GGAAAATAGGGCAAAGAAAAGATTTCCATTG-AAAAGAAAAACATCCATATCATATATCCTAAGG
66 GGAAAATAGGGCAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * ** * *
296836 AGGAGAATAAGTTTATAATGCCTAATCACAATGTGAATAAAGATCATTACTAGAATCCATGTTTG
130 AGAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTG
* * * * * *
296901 GCACATTTCAGGCACGAACATAGACTTTACCAAAATTGGTGGAAAGGAAG-CTTTCTTACGAAAC
195 TCACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* * *
296965 CGAAA-CATTAATTTCGTGTATCCATATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGA
260 C-AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGA
* * * *
297029 ATGAGGGTTAGTGTGACTACTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATAAAAAA
324 AGGAGGATTAGTGTGACTACTCATGTTTGTCTTA-TTTA-AGAGAAACTTTGATTCTATCAAAAA
* * * * * *
297094 TGGTTGGAAGAAATGCTTTTCTTGTGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAA
387 CGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGAGTATCCTAATGAAAGGAA
*
297159 TGTGTTTTT-GGTCTCCAATCTCG
452 TGTGTTTTTCGTTC-CCAATCTCG
* * *
297182 AAAAGAGTGGATACTGTTACGAGAATTAATGCTTTCCTTATTTAAGGAATTAAATTTGATTTTAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
*
297247 GGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
*
297312 GAAGAACACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
131 GAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
* *
297377 CACAATTGAGGCAGGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACC
196 CACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* * *
297442 AAGCCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTACCTAATCCAAAAAAAAAA
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AAAAAAGAA
* * ** *
297507 GGAGGATTAGCGTGACTACTCTTGTTTGTCTTATTTGGGAGATAAGCTTTGATTCTATCAAAAAT
325 GGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGA-AA-CTTTGATTCTATCAAAAAC
* * * *
297572 GGTTGAAAGAAATACTTTTCTTGCGACATCAAAGCTTCAATG-TCACGTCTCCTAATGAAAGGAA
388 GGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGA-GTATCCTAATGAAAGGAA
297636 TGTGTTTTTCGTTCCCAATCTCG
452 TGTGTTTTTCGTTCCCAATCTCG
* * *
297659 AAAAGAGTGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATTAAATTTGATTTAAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
*
297724 GGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
*
297789 GAAGAATACGTTTATAGTGCCTAAGCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
131 GAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
* * *
297854 CACAATTGAGGCACGAACTTAAACTTTACCAAAATTGGTGGGATGAAAGCCTTTCTTACAAAACC
196 CACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* * *
297919 AAACCATCTATATCGTGTATCCTTATGAGAAGACTAAGTTTCTGGTGCCTATTCCAAAAAAGAAG
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAG
* *
297984 GAGGATTAGTGTGACTAGTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACAGT
326 GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGT
* * *
298049 TGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAGTGTTGAGTATCCTAATGCAAGGAATGTG
391 TGAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGAGTATCCTAATGAAAGGAATGTG
*
298114 TTTTTCGTTCCCAATCTCA
456 TTTTTCGTTCCCAATCTCG
* * * * *
298133 AAAAGTGTGGAGACTGTTATGAGAATCAATGCTTGCCATATTTAGGGAATTAAATTTGATGTTAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
* * * *
298198 GGAAAATAGGGCAAAGAAAAGATTTCTATGCTAAAGAAATTCATCAATATCATTTATCTTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * *
298263 GAAGAATACGTTTATAGCGCCTAGTCACAAAATGAGTGAAGACCATTACTAGAATCCATGTTTGT
131 GAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
* * * *
298328 CACAATTGAGGCACGAAGTTAGACTTTACCTAAATTGGTGGGAAAAAAGCCTTTTTTACGAAACC
196 CACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* * *
298393 AAACCATCAATATCGGGTATCCTTATGAGAAGACTAAGTTTTTGGTGCCTAATCCAAAAAAGAAT
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAG
* * * *
298458 GAGGATTAGTGGGACTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTTTCTAAAACG
326 GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAG--AAACTTTGATTCTATCAAAAACG
* * * *
298523 GTTGGAAA-AAGTGCTTTTCTTGCGACATCAAAGCATCAATGTCGCGTATCATAATGAAAGGAAT
389 GTT-GAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGAGTATCCTAATGAAAGGAAT
**
298587 GTGTTTTTCGTTATCAATCTCG
453 GTGTTTTTCGTTCCCAATCTCG
*
298609 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTTATTTTAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
* * *
298674 GGAAAATAGGGCAAAGAAAAGATTTCCATG-AAAAAAAAATCATCAATATTATTTATCCTAATGC
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* *
298738 GAAGAATACATTTATAGTGCCTAATCACAAAATGAGTGAAGACCATTACTAGAATCCATGTTTGT
131 GAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
* * * ** *
298803 CACAATTGAGGCAAGAACATAGAATTTACCAAAATTGGTGGGAAGGTAG-CTTTCTTACCAAACC
196 CACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* *
298867 AAACCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAT
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAG
* * * * *
298932 GAGGACTAGTTTGACTGCTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAATG
326 GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAG--AAACTTTGATTCTATCAAAAACG
* * * *
298997 GTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAACG-TCACGTATCCTAATGAAAGGCAT
389 GTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGA-GTATCCTAATGAAAGGAAT
* * *
299061 GTGTTTTT-GGTCCTCAGTGTCG
453 GTGTTTTTCGTTCC-CAATCTCG
* *
299083 AAAAGAGTGGAGACT-TTAAGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGAATTTAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
* *
299147 TGAAAATAGGGCAGAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * *
299212 GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTGCAAGAATCCATATTTGT
131 GAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
* * *
299277 CACAATTGAGGCACGAATTTAGACTTTATCAAAATTGGTGGGAAGAAAGCCATTCTTACGAAACC
196 CACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* *
299342 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCAAAAAACAAG
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAG
* *
299407 GAGGATTAGTGTGACTACTTATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGC
326 GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGT
* * *
299472 T-AGAAGAAATGCTTTTCTTGCGACATCAAAGCGTTAATG-TCACGTATCCTAATGAAAGGAATG
391 TGA-AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGA-GTATCCTAATGAAAGGAATG
* * * *
299535 TGTTATTCATTCCTAATCTCA
454 TGTTTTTCGTTCCCAATCTCG
* * * * *
299556 AAAAGAGTGAAGACTGTTACGAGAATCAATGCTTTCCTTAGTTAAGGAATGAACTTTGATTTTAA
1 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
* * * * *
299621 GGAAAATAGGGCAAAGAAAACATTTCCATTG-AAAAGAAAAACATCCATATCATATATCCTAAGG
66 GGAAAATAGGGCAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * ** * *
299685 AGGAGAATAAGTTTATACTGCCTAATCACAATGTGAATAAAGATCATTACTAGAATCCATGTTTG
130 AGAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTG
* * * * * * *
299750 GCACATTTCG-GGTACGAACATAGACTTTACCAAAATTGGTGGAAAGGAAG-CTTTCTTAAGAAA
195 TCACAATT-GAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
*** * * *
299813 CCAAAATGTTAATTTCGTGTATCCGTATGAGAAGACTAAGTTTTATGGTGCCTAATCCAAAAAAG
259 CCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAG-TTTATGGTGCCTAATCCAAAAAAG
* * * *
299878 AATGTGGGTTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAA
323 AAGGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAG--AAACTTTGATTCTATCAAAA
* * * *
299943 ATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTCGTGTATCCTAATGAAAGGA
386 ACGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGAGTATCCTAATGAAAGGA
300008 ATGTGTTTTT
451 ATGTGTTTTT
300018 GGTCCCTGAT
Statistics
Matches: 2944, Mismatches: 333, Indels: 65
0.88 0.10 0.02
Matches are distributed among these distances:
473 337 0.11
474 1234 0.42
475 569 0.19
476 372 0.13
477 429 0.15
478 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (474 bp):
AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAA
GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
GAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
CACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAG
GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGT
TGAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGAGTATCCTAATGAAAGGAATGTG
TTTTTCGTTCCCAATCTCG
Found at i:299281 original size:949 final size:949
Alignment explanation
Indices: 296234--300022 Score: 5641
Period size: 949 Copynumber: 4.0 Consensus size: 949
296224 GTTGTCATCA
*
296234 AAAAGAGTGGAGACT-TTAAGAGAATCAATGCTTGTCTTATTTAAGGAATTAAATTTGAATTTAA
1 AAAAGAGTGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGAATTTAA
* * *
296298 GGAAAATAGGGTAGAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
*
296363 GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTGCAAGAATCCATATTTGT
131 GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACAAGAATCCATATTTGT
296428 CACAATTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
196 CACAATTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* *
296493 AAACCATCAATATTGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCGAAAAACAAG
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCAAAAAACAAG
* *
296558 GAGGATTAGTGTGACTAATTATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGC
326 GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGC
* ***
296623 TAGAAGAAATGCTTTTCTTGCGACATCAAAGTGTCAATGTTGTGTATCCTAATGAAAGGAATGTG
391 TAGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTG
*
296688 TTTTTCGTTCCCAATCTCGAAAAGAGTGAAGACTGTTACGAGAATCAATGCTTTCCTTATTTAAG
456 TTTTTCGTTCCCAATCTCGAAAAGAGTGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
* *
296753 GAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATTGAAAAGAAAAACATCC
521 GAATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATTGAAAAGAAAAACATCA
* * ** *
296818 ATATCATATATCCTAAGGAGGAGAATAAGTTTATAATGCCTAATCACAATGTGAATAAAGATCAT
586 ATATCATATATCCTAAGGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATAAAGACCAT
* * *
296883 TACTAGAATCCATGTTTGGCACATTTCAGGCACGAACATAGACTTTACCAAAATTGGTGGAAAGG
651 TACTAGAATCCATGTTTGGCACAATTGAGGCACGAACATAGAATTTACCAAAATTGGTGGAAAGG
* * *
296948 AAGCTTTCTTACGAAACCGAAA-CATTAATTTCGTGTATCCATATGAGAAGACTAAGTTTATGGT
716 AAGCTTTCTTACGAAACC-AAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGT
* *
297012 GCCTAATCCAAAAAAGAATGAGGGTTAGTGTGACTACTCATGTTTGTCTTATTTTAGAGACAAAC
780 GCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGACAAAC
* * *
297077 TTTGATTCTATAAAAAATGGTTGGAAGAAATGCTTTTCTTGTGACATCAAAGCGTCAATGTCGCG
845 TTTGATTCTATAAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTCACG
297142 TATCCTAATGAAAGGAATGTGTTTTTGGT-CTCCAATCTCG
910 TATCCTAATGAAAGGAATGTGTTTTTGGTCCT-CAATCTCG
* * * * *
297182 AAAAGAGTGGATACTGTTACGAGAATTAATGCTTTCCTTATTTAAGGAATTAAATTTGATTTTAA
1 AAAAGAGTGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGAATTTAA
*
297247 GGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * *
297312 GAAGAACACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGT
131 GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACAAGAATCCATATTTGT
* * *
297377 CACAATTGAGGCAGGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACC
196 CACAATTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* * * *
297442 AAGCCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTACCTAATCCAAAAAAAAAA
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCC-AAAAAACAA
* * ** *
297507 GGAGGATTAGCGTGACTACTCTTGTTTGTCTTATTTGGGAGATAAGCTTTGATTCTATCAAAAAT
325 GGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGA-AA-CTTTGATTCTATCAAAAAC
* * * *
297572 GG-TTGAAAGAAATACTTTTCTTGCGACATCAAAGCTTCAATGTCACGTCTCCTAATGAAAGGAA
388 GGCTAG-AAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAA
* *
297636 TGTGTTTTTCGTTCCCAATCTCGAAAAGAGTGGAGACTATTACGAGAATCAATGCTTGCCTTATT
452 TGTGTTTTTCGTTCCCAATCTCGAAAAGAGTGAAGACTGTTACGAGAATCAATGCTTGCCTTATT
* * * * *
297701 TAAGGGATTAAATTTGATTTAAAGGAAAATAGGGCAAAGAAATGATTTCCA-TGCAAAAGAAAAT
517 TAAGGAATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATTG-AAAAGAAAAA
* * * * *
297765 CATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAAGCACAAAATGAATGAAG
581 CATCAATATCATATATCCTAAGGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATAAAG
* *
297830 ACCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTA-AACTTTACCAAAATTGGTG
646 ACCATTACTAGAATCCATGTTTGGCACAATTGAGGCACGAACATAGAA-TTTACCAAAATTGGTG
* * * * *
297894 GGATGAAAGCCTTTCTTACAAAACCAAACCATCTATATCGTGTATCCTTATGAGAAGACTAAGTT
710 GAAAGGAAG-CTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTT
* * * *
297959 TCTGGTGCCTATTCCAAAAAAGAAGGAGGATTAGTGTGACTAGTCATGTTTGTCTTATTTAAGAG
774 TATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAG
* ** * * *
298024 --AAACTTTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAGT
839 ACAAACTTTGATTCTATAAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAAT
* * * *
298087 GTTGA-GTATCCTAATGCAAGGAATGTGTTTTTCGTTCC-CAATCTCA
904 G-TCACGTATCCTAATGAAAGGAATGTGTTTTT-GGTCCTCAATCTCG
* * * *
298133 AAAAGTGTGGAGACTGTTATGAGAATCAATGCTTGCCATATTTAGGGAATTAAATTTG-ATGTTA
1 AAAAGAGTGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGAAT-TTA
* * * *
298197 AGGAAAATAGGGCAAAGAAAAGATTTCTATGCTAAAGAAATTCATCAATATCATTTATCTTAATG
65 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * * * *
298262 AGAAGAATACGTTTATAGCGCCTAGTCACAAAATGAGTGAAGACCATTACTAGAATCCATGTTTG
130 AGAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACAAGAATCCATATTTG
* * * *
298327 TCACAATTGAGGCACGAAGTTAGACTTTACCTAAATTGGTGGGAAAAAAGCCTTTTTTACGAAAC
195 TCACAATTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* * * *
298392 CAAACCATCAATATCGGGTATCCTTATGAGAAGACTAAGTTTTTGGTGCCTAATCCAAAAAAGAA
260 CAAACCATCAATATCGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCAAAAAACAA
* * * * *
298457 TGAGGATTAGTGGGACTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTTTCTAAAAC
325 GGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAG--AAACTTTGATTCTATCAAAAAC
* * * * *
298522 GGTTGGAA-AAAGTGCTTTTCTTGCGACATCAAAGCATCAATGTCGCGTATCATAATGAAAGGAA
388 GGCTAGAAGAAA-TGCTTTTCTTGCGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAA
** *
298586 TGTGTTTTTCGTTATCAATCTCGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATT
452 TGTGTTTTTCGTTCCCAATCTCGAAAAGAGTGAAGACTGTTACGAGAATCAATGCTTGCCTTATT
* *
298651 TAAGGAATTAAATTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA-TGAAAA-AAAAAT
517 TAAGGAATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATTGAAAAGAAAAA-
* * * * * *
298714 CATCAATATTATTTATCCTAATGCGAAGAATACA-TTTATAGTGCCTAATCACAAAATGAGTGAA
581 CATCAATATCATATATCCTAAGGAGAAGAATA-AGTTTATAGTGCCTAATCACAAAATGAATAAA
* *
298778 GACCATTACTAGAATCCATGTTTGTCACAATTGAGGCAAGAACATAGAATTTACCAAAATTGGTG
645 GACCATTACTAGAATCCATGTTTGGCACAATTGAGGCACGAACATAGAATTTACCAAAATTGGTG
* * * *
298843 GGAAGGTAGCTTTCTTACCAAACCAAACCATCAATATCATGTATCCTTATGAGAAGACTAAGTTT
710 GAAAGGAAGCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTT
* * *
298908 ATGGTGCCTAATCCAAAAAAGAATGAGGACTAGTTTGACTGCTCATGTTTGTCTTATTTAAGAGA
775 ATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGA
* *
298973 CAAACTTTGATTCTATTAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAACG
840 CAAACTTTGATTCTATAAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATG
* * *
299038 TCACGTATCCTAATGAAAGGCATGTGTTTTTGGTCCTCAGTGTCG
905 TCACGTATCCTAATGAAAGGAATGTGTTTTTGGTCCTCAATCTCG
299083 AAAAGAGTGGAGACT-TTAAGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGAATTTAA
1 AAAAGAGTGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGAATTTAA
* *
299147 TGAAAATAGGGCAGAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
66 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
*
299212 GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTGCAAGAATCCATATTTGT
131 GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACAAGAATCCATATTTGT
* *
299277 CACAATTGAGGCACGAATTTAGACTTTATCAAAATTGGTGGGAAGAAAGCCATTCTTACGAAACC
196 CACAATTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
299342 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCAAAAAACAAG
261 AAACCATCAATATCGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCAAAAAACAAG
*
299407 GAGGATTAGTGTGACTACTTATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGC
326 GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGC
*
299472 TAGAAGAAATGCTTTTCTTGCGACATCAAAGCGTTAATGTCACGTATCCTAATGAAAGGAATGTG
391 TAGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTG
* * * * * *
299537 TTATTCATTCCTAATCTCAAAAAGAGTGAAGACTGTTACGAGAATCAATGCTTTCCTTAGTTAAG
456 TTTTTCGTTCCCAATCTCGAAAAGAGTGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
* * *
299602 GAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAACATTTCCATTGAAAAGAAAAACATCC
521 GAATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATTGAAAAGAAAAACATCA
* * ** *
299667 ATATCATATATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAATGTGAATAAAGATCAT
586 ATATCATATATCCTAAGGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATAAAGACCAT
* * *
299732 TACTAGAATCCATGTTTGGCACATTTCG-GGTACGAACATAGACTTTACCAAAATTGGTGGAAAG
651 TACTAGAATCCATGTTTGGCACAATT-GAGGCACGAACATAGAATTTACCAAAATTGGTGGAAAG
* *** * * *
299796 GAAGCTTTCTTAAGAAACCAAAATGTTAATTTCGTGTATCCGTATGAGAAGACTAAGTTTTATGG
715 GAAGCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAG-TTTATGG
* *
299861 TGCCTAATCCAAAAAAGAATGTGGGTTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGACAAA
779 TGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGACAAA
**
299926 CTTTGATTCTATAAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTCGT
844 CTTTGATTCTATAAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTCAC
299991 GTATCCTAATGAAAGGAATGTGTTTTTGGTCC
909 GTATCCTAATGAAAGGAATGTGTTTTTGGTCC
300023 CTGATGACAA
Statistics
Matches: 2544, Mismatches: 266, Indels: 61
0.89 0.09 0.02
Matches are distributed among these distances:
947 177 0.07
948 296 0.12
949 898 0.35
950 369 0.15
951 386 0.15
952 312 0.12
953 106 0.04
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (949 bp):
AAAAGAGTGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGAATTTAA
GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
GAAGAATACATTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACAAGAATCCATATTTGT
CACAATTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
AAACCATCAATATCGTGTATCCTTATGAGAAGACTAACTTTATGGTGCCTAATCCAAAAAACAAG
GAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGC
TAGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTG
TTTTTCGTTCCCAATCTCGAAAAGAGTGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
GAATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATTGAAAAGAAAAACATCA
ATATCATATATCCTAAGGAGAAGAATAAGTTTATAGTGCCTAATCACAAAATGAATAAAGACCAT
TACTAGAATCCATGTTTGGCACAATTGAGGCACGAACATAGAATTTACCAAAATTGGTGGAAAGG
AAGCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTG
CCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATAAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTCACGT
ATCCTAATGAAAGGAATGTGTTTTTGGTCCTCAATCTCG
Found at i:304184 original size:42 final size:42
Alignment explanation
Indices: 304129--304247 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
304119 TTCTTCTCTC
* *
304129 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
304171 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
304213 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
304248 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:304188 original size:12 final size:11
Alignment explanation
Indices: 304162--304237 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
304152 TCTATTATCT
*
304162 CTCCTGTCTCTC
1 CTCCTATCTC-C
304174 CTCCTATCATCC
1 CTCCTATC-TCC
304186 CTCCTATCT--
1 CTCCTATCTCC
*
304195 CTACTATCT--
1 CTCCTATCTCC
*
304204 CTCCTGTCTCTC
1 CTCCTATCTC-C
304216 CTCCTATCATCC
1 CTCCTATC-TCC
*
304228 CTCCTCTCTC
1 CTCCTATCTC
304238 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:304189 original size:24 final size:24
Alignment explanation
Indices: 304153--304238 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
304143 CCTCCTCTCT
* *
304153 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
304177 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
304198 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
304219 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
304239 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:304213 original size:18 final size:18
Alignment explanation
Indices: 304144--304214 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
304134 CCTGTCATCC
* *
304144 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
304162 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
304184 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
304204 CTCCTGTCTCT
1 CTCCTGTCTCT
304215 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:310779 original size:475 final size:475
Alignment explanation
Indices: 306124--313171 Score: 9599
Period size: 476 Copynumber: 14.9 Consensus size: 475
306114 GGGAAGAAAG
*
306124 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAAGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* * * * * * *
306189 GATTAGCGTGACTACTCTTGTTTGTCTTATTTAGGAGATAAACTTTGATTGTATCAAAAATGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* ** * * *
306254 GAAAGAAATGCTTTTCTTCTGGCATCAAAGCTTCAATGTCACGTATCCTAATGAAAGGAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
* *
306319 TTTTCGTTCCCAATCTCGAAAAGAGTGGAGACTATTA-GAGAATCAATGCTTGCCTTATTTAAGG
196 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* * *
306383 GATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAATA-ATTTCCGTGCAAAAGAAAATTATCA
261 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAA-AGATTTCCATGCAAAAGAAAATCATCA
* * *
306447 ATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCAT
325 ATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCAT
* *
306512 TACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGATGA
390 TACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGA
306577 AAGCCTTTCTTACGAAACCAAA
455 AAG-CTTTCTTACGAAACCAAA
* *
306599 -CAGTCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTATTCCAAAAAAGAAGGA
1 CCA-TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGA
* * *
306663 GGATTAGTGTGACTAGTCATGTTTGTCTTATTTAAGAG--AAACTTTGATTCGATCAAAAACAGT
65 GGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * *
306726 TGAAAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTG
130 TGGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTG
* * * * *
306791 TTTTTCGTTCCTAATCTCAAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCATATTTAGG
195 TTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
306856 GAATTAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCTATGCTAAAGAAATTCATCA
260 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * * * * *
306921 ATATCATTTATCTTAATGAGAAGAATACATTTATAGCGCCTAATCACAAAATGAGTGAAGACCAT
325 ATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCAT
** * * *
306986 TACTAGAATCCATGTTTGTCACAATTGAGGCACGAAGTTAGACTTTACCTAAATTGGAGGGAAAA
390 TACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGA
* *
307051 AAGCCTTTTTTACAAAACCAAA
455 AAG-CTTTCTTACGAAACCAAA
* *
307073 CCATCAATATCGGGTATCCTTATGAGAAGACTAAGTTTATGGTGGCTAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* * * * *
307138 GATTAGTGTGGCTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTTTCTAAAACGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* *
307203 GGAA-AAAGTGCTTTTCTTGCA-ACATCAAAGCATCAATGTCACGTATCCTAATGAAAGGAATGT
131 GGAAGAAA-TGCTTTTCTTG-AGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGT
* *
307266 GTTTTTGGTTCCCAATCTCAAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAA
194 GTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
* * *
307331 GGAATGAACTTGGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
259 GGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * * * **
307396 CATATCATTTATCCTAAGGAGGAGAACAAGTTTTTACTGCCTAATCACACCGTGAATGAAGATCA
324 AATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCA
* * * * *
307461 CTACTAGAATCCACGTTTGGCACATTTTAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAG
389 TTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAG
* *
307526 GAAGCTTTCTTACAAAACCAAA
454 AAAGCTTTCTTACGAAACCAAA
* *
307548 CCATCAATATCGTGTATCATTACGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
*
307613 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAAC---G-TTCTATCAAAAATGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
** * * * * * * * *
307674 AAAAGAAATGCTTTTCTTGCGATATTAGACCGTCAGTGTAGCGTATCCTATTGAAAGGAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
* *
307739 TTTTGGTTCCCAATCTCGGAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
196 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* * * *
307804 AATGAACTTTGA-TTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
261 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * * * * *
307868 TATCATTTATCCTAAGGAGGAGAATAAGTTTAGACTGCCTAATCTCTACGTGAATGAAGATCATT
326 TATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
* * * * * *
307933 ACTGGAATCCATGTTTG--GCATTTGAGGCACGAACATAGACTTTAACAAAATTGGTGAGAACAA
391 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
307996 AGCTTTCTTACGAAACCAAA
456 AGCTTTCTTACGAAACCAAA
* * * * * * *
308016 CCATAAACATCATGTATGCTTATGAGAAAACTAAGTTTAGGGTGCCTAACCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* * * *
308081 GATTTGTGTGACAACTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATCAAAAACGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * ** * *
308146 GGAAGAAATGCCTTTCATGCGACATTGAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
** * * *
308211 TTTTGGTTCCCAATCTCGAAAAGTCTGGAGACGGTTACGAGAATCAATGCTTACCTTATTTAAGG
196 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* ** * * * *
308276 AATGAACCTTGATTTTATGGAAAATAGGGCAAAGAAAAGCTTTCCATGCAAAAGAATATCATCCA
261 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * *
308341 TATCATTTATCCTAAT-AAGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGATGATCATT
326 TATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
* *
308405 ACTAGAATCCATGTTTGTCACATTTGAGGCACGAACGTAGACTTTACCAAAATTGGTGGGAAGAA
391 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
*
308470 AGCATTCTTACGAAACCAAA
456 AGCTTTCTTACGAAACCAAA
* * * *
308490 CCATCAATATCATATATCCTTATGAGAAGACAAAGTTTATAGTGCCTAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* * *
308555 GATTAGTGTAACTTTTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * *
308620 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTTAATGTCGCGTATCCTGATGAAAGAAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
* *
308685 TTTTAGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
196 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
*
308750 AATTAAATTT-ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
261 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * * ** * *
308814 TATCATTTATCCTGATGAGAAGAATGCATTTATAGTGTGTAATCACAAAATGAATGAAGACCATT
326 TATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
* * *
308879 ACTAGGATCTATGTTTGTCACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAA
391 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
*
308944 AGCATTTCTTACAAAACCAAA
456 AGC-TTTCTTACGAAACCAAA
* *
308965 GCATCAATATCGTGTATCATTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* * * * * *
309030 GATTAGTATGACTATTCGTGTTTGTCTTATTTAAGAGGCAAACTTTGGTACTATTAAAAACGG-T
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * * * * *** * * *
309094 CGATATAAATGCTTTTTTTGCGACACCAAAGCATCAATGTCATATATCTTAATGAAA-AAATGTC
131 GGA-AGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTG
* * * *
309158 TTTTTGGTTCCCAATCTTG---AG-G-GAAGACTGTCACGAGAATCAATGCTTGCCTTATTTAAG
195 TTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA-
* * * * *
309218 GGAA--GAATATTGATTTCATGGAAAATAGGGCAAAGAAAAGTTTTCGATGCAAAAGAAAATCAT
259 GGAATTAAAT-TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* ** *
309281 CAATATCATTTATCCTAATGAGGAGAATACATTCGTAGTGCCTAATCACAATGTGAATGAAGATC
323 CAATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC
* * * *
309346 ATTACTACAATCCACGTTTGTCACATTTGAGGCATGAACATAGACTTTACCAAAATTGGTGGGAA
388 ATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAA
*
309411 GAAAGCCTTTCTTATGAAACCAAA
453 GAAAG-CTTTCTTACGAAACCAAA
* * * * * * * *
309435 GCTTCAATATCATGTATCCTTGTGAGAAAACTAAGTTTATGGTGCCAAATCCTAAAAAGAATAAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* * * * *
309500 GATTA----G--TA--C--GTTTGTCTTATTTTAGAGACAAACTTTGATTTTGTCGAAAACTGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * *** *
309555 GAAAGAAATGCTTTT-TTTACGACATCAAAGCGTCAATGTCATATATCCTAATGAAAGGAATGTA
131 GGAAGAAATGCTTTTCTTGA-GACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTG
* * * *
309619 TTTTTGGTTCCCAATGTTGAAAAGAGTGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAG
195 TTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* *
309684 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATTA
260 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * * * *
309749 GTATTATTTATCCTAATAAGAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCAT
325 ATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCAT
* *
309814 TACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAAA
390 TACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGA
309879 AAGCCTTTCTTACGAAACCAAA
455 AAG-CTTTCTTACGAAACCAAA
* * **
309901 CCATCAATATCGTATATCCTTATGAGAAGACAAAGTTTACAGTGCCTAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* *
309966 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTA
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * * *
310031 GGAACAAATGCTTTTCTTGAGACATCTAAGCGTCAATGTCGTGTATCCTGATGAAAGAAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
* * *
310096 TTTTAGTTCCCAATCTCAAAAAGAGTGGAGACTGTTATGAGAATCAAAGCTTGCCTTATTTAAGG
196 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
*
310161 AATTAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
261 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * *
310226 TATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCATAATCACAAAATGAATGAAGACCATT
326 TATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
* *
310291 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTTGACTTTACCAAAATTGGTGGGAAGAA
391 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
* *
310356 AGCTTTCCTACGAAACTAAA
456 AGCTTTCTTACGAAACCAAA
* * *
310376 CCATCAATATCGTGTATGCTTAAGAGAAGACTAAGTTTATGGTGCCAAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* * *
310441 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTGGATTCTATCAAAAACGGTA
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * ** * *
310506 GGAACAAATGCTTTTCTTGAGACATCTAAGCGTCAATGTCATGTATCCTGATGAAAGAAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
* * *
310571 TTTTAGTTCCCAATCTCAAAAAGAGTGGAGACTGTTATGAGAATCAAAGCTTGCCTTATTTAAGG
196 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
*
310636 AATTAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
261 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * *
310701 TATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCATAATCACAAAATGAATGAAGACCATT
326 TATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
* *
310766 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTTGACTTTACCAAAATTGGTGGGAAGAA
391 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
* *
310831 AGCTTTCCTACGAAACTAAA
456 AGCTTTCTTACGAAACCAAA
* * *
310851 CCATCAATATCGTGTATGCTTAAGAGAAGACTAAGTTTATGGTGCCAAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* *
310916 GATTAGTGTGACTTTTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * * * * *
310981 GAAAGAAATGCTTTTCTTGCGACCTTAAACCATCAATGTCGCGTATCCTACTGAAAGGAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
* *
311046 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAAT-AATGCTTGCCTTATTTAGGG
196 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* * *
311110 AATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
261 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * *
311174 TATCATTTATCCTAAGGAGGAGAATAAGTTTATATTGCCTAATCACAATGTGAATGAAGATCATT
326 TATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
* * * * *
311239 ACTAGAATCCATGTTTGGCACAGTTGAGGCACGAACATAGACTTTACCAAAATTAGTAGGAAGGA
391 ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
311304 AGCTTTCTTACGAAACCAAA
456 AGCTTTCTTACGAAACCAAA
311324 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* ** * * * * * * * *
311389 GATTTGCATGACGATTCATGTTTGTCATATTTAAGAGACAGACTTTGGTACTATCAACAATGG-C
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * *** *
311453 AGATAGAAATGCTTTT-TTTACGACACCAAAGCGTCAATGTCATATATCCTAATGAAAGGAATGC
131 GGA-AGAAATGCTTTTCTTGA-GACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGT
* * * *
311517 GTTTTTGGTTCCCAATGTTGAAAAGAGTGGAGACTATTATGAGAATCATTGCTTTGCCTTATTTA
194 GTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGC-TTGCCTTATTTA
* * * * *
311582 AGGGAA--GAATATTGATGTTATGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATC
258 A-GGAATTAAAT-TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * *
311645 ATCAATATCATTTATCCTAATGAGGAGAATATGTTCATAGTGCCTAATCACAACGTGAATGAAGA
321 ATCAATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGA
* * * * *
311710 TCATTACTACAATCCTTCTTTGTCACATTTGAGGCACGGACATAGACTTTACCAAAATTGGTGGG
386 TCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGG
* *
311775 AAGAAAGCCTTTCTTATGAAGCC-AA
451 AAGAAAG-CTTTCTTACGAAACCAAA
* * * * * *
311800 CGCTTCAATATCATTTATGCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGA
1 C-CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGA
* *
311865 GGATTAGTGTGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT
65 GGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * * * *
311930 TGAAAAAAATGCTTTTCTT-ACGACATTAAAGCGTCAAAGTCGCATATCCTATTGAAAGGAATGT
130 TGGAAGAAATGCTTTTCTTGA-GACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGT
* *
311994 GTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGACAATCAATGCTTGCCTTATTTAA
194 GTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
* *
312059 TGAATTAAATTTGATTTTAAGGAAAACAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
259 GGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* ** * * *
312124 AATATCATTTATCCTAATGAGGAGACTTTGTTTATAGTGCCTAATAACATAGTAAATGAAGATCA
324 AATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCA
* * * * *
312189 TTACTACAATCCATGCTTGCCATAATTGAGGCACGAACATAAACTTTACCAAAATTGGTGGGAAG
389 TTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAG
*
312254 GAAGCCTTTCTTACGAAACCAAA
454 AAAG-CTTTCTTACGAAACCAAA
*
312277 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATTCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* *
312342 GATTAGTGTGACTACTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* *
312407 GGAAGAAATGCTTTTCTTGTA-ACATCAAAGCGCCAATGTCGCGTATCCTAATGAAAAGAATGTG
131 GGAAGAAATGCTTTTCTTG-AGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTG
* * * *
312471 GTTTTGGTTCCTAATCTCGAAAAGTA-TGGAGATTGTTATGAGAATCAATGCTTACCTTATTTAA
195 TTTTTGGTTCCCAATCTCGAAAAG-AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
* * * *
312535 GGAATGAACTCTGATATTAAGGAAAATTA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
259 GGAATTAAATTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * *
312599 CCATATCATTTATCCTAAGGAGGAGAATAAGTTTATATTGCCTAATCACAACA-TGAATGAAGAT
323 CAATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAA-AGTGAATGAAGAT
* * * *
312663 CATTACTAGAATCCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACCAAATTTGGTGGGA
387 CATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGA
312728 AGAAAGCTTTCTTACGAAACCAAA
452 AGAAAGCTTTCTTACGAAACCAAA
* *
312752 CCATCAATATTGTGTATGCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
1 CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
* *
312817 GATTTGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTT
66 GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * * *
312882 GAAAGAAATGCTTTTTTTGCGACATTAAAGTGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
131 GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTG-
* *
312947 TTTTTGGTTCCCAATCTCGAAAAGAGTGGAAATTGTTATGAGAATCAATGCTTGCCTTATTTAAG
195 TTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* *
313012 GAA-TAAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAAGATTT-CATG-GAAAGAAAATCATC
260 GAATTAAA-TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * * * *
313074 CATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAACGAAGATTA
324 AATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCA
* *
313139 TTACTAGAATCCATGTTTGGCACATTTGAGGCA
389 TTACTAGAATCCATGTTTGTCACAATTGAGGCA
313172 TGGCACATTT
Statistics
Matches: 5855, Mismatches: 648, Indels: 141
0.88 0.10 0.02
Matches are distributed among these distances:
459 2 0.00
460 79 0.01
461 25 0.00
462 1 0.00
464 4 0.00
465 5 0.00
466 279 0.05
467 3 0.00
468 157 0.03
469 35 0.01
470 371 0.06
471 139 0.02
472 204 0.03
473 613 0.10
474 893 0.15
475 1323 0.23
476 1487 0.25
477 231 0.04
478 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (475 bp):
CCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
GATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
GGAAGAAATGCTTTTCTTGAGACATCAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGT
TTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
TATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
ACTAGAATCCATGTTTGTCACAATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
AGCTTTCTTACGAAACCAAA
Found at i:310987 original size:157 final size:156
Alignment explanation
Indices: 309874--310994 Score: 388
Period size: 159 Copynumber: 7.1 Consensus size: 156
309864 AAATTGGTGG
* * * * * *
309874 GAAA-AAAGCCTTTCTTACGAAACCAAACCATCAATATCGTATATCCTTATGAGAAGACA-AAGT
1 GAAAGAAAG-CTTTCCTACGAAACTAAACCATCAATATCATGTATGCTTAAGAGAAGA-ATAAGT
* * *
309937 TTACAGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGA
64 TTATAGTGCCAAATCCAAAAAAGAATGAGGACTAGTGTGACTATTCATGTTTGTCTTATTTAAGA
310002 GAA-AAACTTTGATTCTATCAAAAACGGT
129 -AACAAACTTTGATTCTATCAAAAACGGT
* * * * * * * * * * *
310030 AGGAACAAATGCTTTTCTTGA-GACATCT-AAGCGTCAATGTCGTGTATCCTGATGA-AAGAAAT
1 -GAAAGAAA-GC-TTTCCT-ACGA-AACTAAACCATCAATATCATGTATGCTTAAGAGAAG-AAT
** * * * * * * * * * *
310092 GTGTTTTTAGTTCCCAATCTC-AAAAAGAGTG-GAGACT-GTTATGA-GAATCAAAGCTTGCCTT
60 AAGTTTATAGTGCCAAATC-CAAAAAAGAATGAG-GACTAG-TGTGACTATTC-ATGTTTGTCTT
** * ** *
310153 ATTTAAGGAATTAAA-TTTGATTTTAAGGAAAATAAGG-
121 ATTTAA-GAAACAAACTTTGATTCT-ATCAAAA-ACGGT
* * * * ** * * * *
310190 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT-CCTAATGAGAAGAATACG
1 GAAAG-AAAGCTTTCC-TACGAAACTAAACCATCAATATCATGTATGCTTAA-GAGAAGAATAAG
* * * * ** *
310254 TTTATAGTG-CATAAT-CACAAAATGAATGAAGACCA-T-T-ACTAGAATCCATGTTTGTCACAA
63 TTTATAGTGCCA-AATCCA-AAAAAGAATGAGGACTAGTGTGACT---ATTCATGTTTGTCTTAT
* ** * * **
310314 TTGAGGCACGAACTTTGACTT-TACCAAAATTGGT
123 TTAAGAAACAAACTTTGA-TTCTATCAAAAACGGT
* * *
310348 GGGAAGAAAGCTTTCCTACGAAACTAAACCATCAATATCGTGTATGCTTAAGAGAAGACTAAGTT
1 -GAAAGAAAGCTTTCCTACGAAACTAAACCATCAATATCATGTATGCTTAAGAGAAGAATAAGTT
* *
310413 TATGGTGCCAAATCCAAAAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAG
65 TATAGTGCCAAATCCAAAAAAGAATGAGGACTAGTGTGACTATTCATGTTTGTCTTATTTAAGA-
*
310478 AA-AAACTTGGATTCTATCAAAAACGGT
129 AACAAACTTTGATTCTATCAAAAACGGT
* * * * * * * * * *
310505 AGGAACAAATGCTTTTCTTGA-GACATCT-AAGCGTCAATGTCATGTATCCTGATGA-AAGAAAT
1 -GAAAGAAA-GC-TTTCCT-ACGA-AACTAAACCATCAATATCATGTATGCTTAAGAGAAG-AAT
** * * * * * * * * * *
310567 GTGTTTTTAGTTCCCAATCTC-AAAAAGAGTG-GAGACT-GTTATGA-GAATCAAAGCTTGCCTT
60 AAGTTTATAGTGCCAAATC-CAAAAAAGAATGAG-GACTAG-TGTGACTATTC-ATGTTTGTCTT
** * ** *
310628 ATTTAAGGAATTAAA-TTTGATTTTAAGGAAAATAAGG-
121 ATTTAA-GAAACAAACTTTGATTCT-ATCAAAA-ACGGT
* * * * ** * * * *
310665 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT-CCTAATGAGAAGAATACG
1 GAAAG-AAAGCTTTCC-TACGAAACTAAACCATCAATATCATGTATGCTTAA-GAGAAGAATAAG
* * * * ** *
310729 TTTATAGTG-CATAAT-CACAAAATGAATGAAGACCA-T-T-ACTAGAATCCATGTTTGTCACAA
63 TTTATAGTGCCA-AATCCA-AAAAAGAATGAGGACTAGTGTGACT---ATTCATGTTTGTCTTAT
* ** * * **
310789 TTGAGGCACGAACTTTGACTT-TACCAAAATTGGT
123 TTAAGAAACAAACTTTGA-TTCTATCAAAAACGGT
* * *
310823 GGGAAGAAAGCTTTCCTACGAAACTAAACCATCAATATCGTGTATGCTTAAGAGAAGACTAAGTT
1 -GAAAGAAAGCTTTCCTACGAAACTAAACCATCAATATCATGTATGCTTAAGAGAAGAATAAGTT
* * *
310888 TATGGTGCCAAATCCAAAAAAGAATGAGGATTAGTGTGACTTTTCATGTTTGTCTTATTTAAGAA
65 TATAGTGCCAAATCCAAAAAAGAATGAGGACTAGTGTGACTATTCATGTTTGTCTTATTTAAGAA
310953 ACAAACTTTGATTCTATCAAAAACGGTT
130 ACAAACTTTGATTCTATCAAAAACGG-T
310981 GAAAGAAATGCTTT
1 GAAAGAAA-GCTTT
310995 TCTTGCGACC
Statistics
Matches: 670, Mismatches: 211, Indels: 165
0.64 0.20 0.16
Matches are distributed among these distances:
156 6 0.01
157 206 0.31
158 100 0.15
159 297 0.44
160 55 0.08
161 6 0.01
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (156 bp):
GAAAGAAAGCTTTCCTACGAAACTAAACCATCAATATCATGTATGCTTAAGAGAAGAATAAGTTT
ATAGTGCCAAATCCAAAAAAGAATGAGGACTAGTGTGACTATTCATGTTTGTCTTATTTAAGAAA
CAAACTTTGATTCTATCAAAAACGGT
Found at i:313177 original size:16 final size:16
Alignment explanation
Indices: 313156--313187 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
313146 AATCCATGTT
313156 TGGCACATTTGAGGCA
1 TGGCACATTTGAGGCA
313172 TGGCACATTTGAGGCA
1 TGGCACATTTGAGGCA
313188 CGAACATAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (16 bp):
TGGCACATTTGAGGCA
Found at i:315324 original size:476 final size:477
Alignment explanation
Indices: 313216--322854 Score: 11853
Period size: 476 Copynumber: 20.2 Consensus size: 477
313206 AAATTGGTGG
* * * * * * * * *
313216 CTCCTCATTAGGATAAGTGTTATTGATGGTATTCTTATGCGTGGAAATCTATTCTTTGCTC-ATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * ** * *
313280 TTCCTAAAAACCAAAGTTCATCCCTTAAATAAGGCAAGCATTGAATCTTGTAACAGTCTTCACGC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* * *
313345 TTTTCAAGATTGGAAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGACGATTAGGT
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGGT
* * * *
313410 GTCGCAAGAAAAGCATTTCTCTCAACCGTTTTTAATAGAGTCAAAGTTTGTCTCTTAAATGAGAC
196 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * *
313475 AAACATGAATAGGCCTACTAATCCCAAATCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTA
261 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTA
* * * * * * *
313540 ATAACGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGACTTTCTTCTCGCCAATTTTTGCA
326 ATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * *
313605 AAGTTTAAGTTCGTGCCT-AAGTTGTGACAAACGTGGATTCTAGTAATGTTCTTCATTCCCTTTG
391 AAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTG
*
313669 TGATTAGGCACTATAAGCACATT
455 TGATTAGGCACTATAAACACATT
*
313692 CTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * *
313757 TT-CTTCAAAATCAATGTTCATCCTTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATT
66 TTCCTT-AAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACT
* * * * * *
313821 CTTTTCATGATTGGGAACC-AAGAACACATTCCTTTCAGTAGGATACATAACATTGATGCTTTGG
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* * * * * * * *
313885 TATTGGAAGAAAAGC-TTT-TTTTAACCGTTTTTGATAAAATCAATGTTTGTCTCTTATATAAGG
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
** * *
313948 CAAACATGAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGTACCTTAAACTTAGTCTTCT
260 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
**
314013 CGTAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGT
325 AATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGT
* ** * * * ***
314078 AAAGTCTAAGTTTGTGTGTCAATTGTGACAACCATGGATTCTAGTAATGATGTACATTTTTTTCT
390 AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTT-T
*
314143 GTGATTAGGCACTGTAAACACATT
454 GTGATTAGGCACTATAAACACATT
* * * * * * *
314167 CTTCTCGTGAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTCCTCTGCCTTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * *
314232 TTCCATAAAATTAAAGTTCATCCCTTAAATAAGGCAGGCATTGATTCTCATAACAGTCTCCACTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* * * * *
314297 TTCTCAAGATTGGGAA-CTAGAAACACATTCCTTTCATTAGGACATATGACATTG-TCACTTTGG
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGA-TTTGG
* * * * * * *
314360 TGTCCCAAGAAAAGCATTTTTTTCAACCATTTTTGATAAAATCAAAGTTTGCCTCTCAAAAAAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
314425 CAAACATGAATAATCATACTAATCCCCATTCTTTGT-TGGATTAGGCACCATAAACTTAGTCTTC
260 CAAACATGAATAGTCATACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACTTAGTCTTC
* * * * *
314489 TAAAAAGGATACATGATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTG
324 TAATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTG
* *
314554 TAAAGCCTAAGTTCGTGCCTCAATTGTGACAAAC-TAGGATTCTAGTAATGATTTTCATTCACTT
389 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT-GGATTCTAGTAATGATCTTCATTCACTT
*
314618 TGTGATT----ACTATAAACATATT
453 TGTGATTAGGCACTATAAACACATT
* * * * * * *
314639 CTCCTCATTAGGATAAGTGTTATTGATGGTATTCTTTTACATGGAAATCTATTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * *
314704 TTCCTAAAAACCAATGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCGTAACACTCTGCACAT
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCAC-T
* * *
314769 -TTTTCAAGATTGGGAACCAAAACACACATTCCTTTCATTAGGATATATGACATTGACGATTTGA
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* * *
314833 TGTCGTAAGAAAAGCATTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
314898 TAAACATGCATAGTTAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCCTCT
260 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* ** *
314963 CATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCTTAACAATTTTTGT
325 AATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGT
** * *
315028 AAAGTCTAAGTTTATGCCTCAATTGTAAC-AACTTGGATTCTAGTAATGATCTTCATTCACTTTG
390 AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTG
* *
315092 TTATTAGGCACAATAAACACATT
455 TGATTAGGCACTATAAACACATT
* * * *
315115 CTCCTCATTAGGATAAAAGATATTGATGATTTGCTTTTGTATGGAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * * * *
315180 TTTCTTACAATCAAAGTTCATCCCTTAAATAATGCAAGTATTGATTCTCCTAA-TGCTCTCCATT
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAG-TCTCCACT
* *
315244 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTACATTAGGATATACGACATTGATGATTTGG
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* * * *
315309 TGTCGCATGAAAAGCATTTCCTTCAATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
315374 CAAACATGAATAAATCATACTAATCCTCATTCTGTTT-AGGATTTGGCGCCATAAACATAGTCTT
260 CAAACATGAAT-AGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACTTAGTCTT
* * * * *
315438 CTAATAAGGATGCACGTTATTGAAGCTTTGGTTTCGTAAGAAAAGCTTTCTTCCCACCAATTTTT
323 CTAATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTT
** * * * *
315503 GGGACGCCTAAGTTCGTGCCTCAATTGTGACAAACAAGGATTCTAGTAATGATCTTCATTCATTT
388 GTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTT
* *
315568 TGTAATTAGGCTCTATAAACACATT
453 TGTGATTAGGCACTATAAACACATT
* * * *
315593 CTCCTCAATAGGATAAATGATATGGAAGATTTTCTTTTGCATGAAAATCTTTTTTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * *
315658 TTCCTAAAAATCAATGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCACTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* * * * *
315723 TTTTCAAGATTGGGACCCAAAAAACACTTTCCTTTCATTAGGATATAAGACATTGATGCTTCGGT
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGGT
* * * *
315788 GTCACAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTTTTAAATAAGTC
196 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * *
315853 AAACATGAATAGTTATACTAATCCCCAATCTTTTCAGTATTAGGCACCATAAACTTAATCTTCTA
261 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTA
* * * *
315918 ATAAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCTACCAATTTTTGTG
326 ATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * *
315983 AAGTCTAAGTTCGTGCCT-AAGTTGTGACAAACGTGGATTCTAGTAATGTTCTTCACTCCCTTTG
391 AAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTG
*
316047 TTATTAGGCACTATAAACACATT
455 TGATTAGGCACTATAAACACATT
* * *
316070 CTCC-CTGTTAGGATAAATGATATGGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
1 CTCCTC-ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * *
316134 TTTCCTTAAAATCAAAGTTCATCCCTTAAATATGGCAACCATTGATTCTC-TCAACAGTCTCCAT
65 TTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCAT-AACAGTCTCCAC
* * * * * * *
316198 TCTTTTCATGATTGAGAAAC-AGAAACACATTCCTTTCAATAGGATACATGACATTGATGCTTT-
129 TCTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTG
* * * * * * *
316261 TTATTGCAAGAAAAGCATTTTTTTCAACCATTTTTGATAAAAT-ATAAGTTTGTCTCTTATATAA
194 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCA-AAGTTTGTCTCTTAAATAA
* * * * ** ** *
316325 GGCAAACAAGAATGGTCATACTAATCCCTATTCTTTTTTGGATTAGGTGCCTTAAACTTAGTCTT
258 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
* * * * *
316390 TTCATAAGGATACATGATATTGACGCTTTGGTTTCGAAAGAAAGGCTTT-TGTCTCACCAATTTT
323 CTAATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCT-TCCCACCAATTTT
* * * * * *
316454 TGTAAAGTCTAAGTTTGTGCGTCAATTGTGACAACCATGGATTCTAGTAATGATGTACATTCATT
387 TGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACT
* *
316519 TTTTGATTAGGCACTATGAACACATT
452 TTGTGATTAGGCACTATAAACACATT
* * * * * *
316545 TTCCTCATTAGGAAAAATGATATTGATGAGTTTCTTTTGTATGGAAAT-TCCTTCTTTGCCCTAT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT-TTTCTTTGCCCTAT
* * * * * * * *
316609 TTGCCATAAAATTAAAGTTCATCCCTTAAATAAGGTAAACATTCATTCTCATAACAGTCTCCACG
65 TTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACT
** * * *
316674 CTTTTCAAGATTGGGAAAGAAAAAGCACATTCCTTTCATTAGGATATATGACATTGACGCTTTGG
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* * * * * * * * *
316739 TATCGCAAGTAAAGTAATT-TTTCAATCGTTTTTGAAAGAATCTATGTTTGTCTCTTAAAAAAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
316803 TAAACATGAATAATCATACTAATCCCCATTCTTTGCAGGAATAGGCACCATAAACTTAGTCTTCT
260 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* * * * * *
316868 AAGAAGGATACATGATATTGAAGCATTGGTTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTGT
325 AATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGT
* *
316933 AAAGCCTAAGTTCGTGCCTCAATTGTGAGAAAC-TAGGATT-TAAGTAATGATCTTCATTCACTT
390 AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT-GGATTCT-AGTAATGATCTTCATTCACTT
* *
316996 TGTGATGAGGCACTATAAACATATT
453 TGTGATTAGGCACTATAAACACATT
* * *
317021 CTCCTCATTAGGATAAATGATATTGATGGTATTCTTTTGCATGGAAATCTATTT-TTTGCCCTAT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT-TTTCTTTGCCCTAT
* *
317085 TTTCC-TAAAATCCAATGTTCAGCCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCA-
65 TTTCCTTAAAAT-CAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCAC
* * *
317148 TGCTTTTCAAGATTAGGAACAAAAAAACATATTCCTTTCATTAGGATATATGACATTG-TGATTT
129 T-CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTT
* * * *
317212 GGTGTCGCAAGAAAAG-ATTTTTTTGAACCATTTTTGATAGAATTAAAGTTTGTCTCTTAAATAA
193 GGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
317276 GAGAAACATAAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTT
258 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
* * * * * * *
317341 CTCATAAAGATAAACGATATTGATGCTTTGGTTACGAAATAAAGGCTTTCTTCCTAACAATTTTT
323 CTAATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * *
317406 GTAAAGTCTAAGTTCATGCCTCAATTGTAACAAACATGGATTCTAGCAATGATCTTTATTCACTT
388 GTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTT
* *
317471 TGTTATTAGGCACAATAAACACATT
453 TGTGATTAGGCACTATAAACACATT
* * *
317496 CTCCTGATTAGGATAAATGATATTGATGATTTGCTTTTGCATGAAAATCTATTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * *
317561 TTCCTAAAAATCAATGTTAATCCTTTAAATAAGGCAAGCATTGATTCCCATAACAGTATCCACTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* ** * *
317626 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTGGGATATATGACATTGACAATTTTGC
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGGT
* * * *
317691 GTCACAAGAAAAGCATTTCTTTCAATCGTTTTTTATAGAATCAAAGATTGTCTCTTAAATAAGAC
196 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
** * * *
317756 AAACGCGAATAATCATACTAATCCTCATTCTTTTCAGGATTTGGCACCATAAACTTAGTCTTCTA
261 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTA
** * * * * ***
317821 ATAAGGATGTATGGTATTGAAGCTTTGGTTTC-ATAAGAAAAGCTTTCTTCCCACCAGGCTTTGT
326 ATAAGGATACACGATATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCCACCAATTTTTGT
* *
317885 AAAGCCTAAGTTCGTGCCTCAATTGTGACAAAC-TAGGATTCTAGTAATGATCCTCATTCACTTT
390 AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT-GGATTCTAGTAATGATCTTCATTCACTTT
317949 GTGATTAGGCACTATAAACACATT
454 GTGATTAGGCACTATAAACACATT
*
317973 CTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * *
318038 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCTAGCATTGATTCTCACAACAGTCTCCATTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* * * * * *
318103 TTTTCATGATTGGGGA-CTAGAAACACAATCCTTTCATTAGGATACATGACATTGATGATTTGGA
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG-
* * *
318167 AG-AGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
318231 CAAACATGAAGAGTCATACTAATCCACAATGTTTCCAGGATTAGGCACCATAAACTTAGTCTTCT
260 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* ** *
318296 AATAAAGATACACGATATTGATGCTTTGGTTTC-ATAAGAAAGGCTTT-TTCCTGCCAATTTTTA
325 AATAAGGATACACGATATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * * * *
318359 TAAAGTGTAAGTTCGTGCCT-AATTTGTGACTAA-GTGAATTCTAGTAATGTTCTTCACTCCCTT
389 TAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTT
*
318422 TGTGATTAGACACTATAAACACATT
453 TGTGATTAGGCACTATAAACACATT
* * * *
318447 CTCGTCATTAAGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * *
318512 TTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCTAGCACTGATTCTCATAACGGTCTCCACTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* * * * *
318577 TTTTCGTA-ATTGGGAAGC-AAAAATACATTCCTTTCATTAGGATACATGACATTGATGATTTAG
131 TTTTC-AAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* * * * * * *
318640 TGGCGCAAGGAAAGCATTTCTTTCAATCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATTAGG
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
318705 CAAACATGAATAGTCAAACTAGA-CCCCATTCTTTTCTA-GATTAGGCACCTTAAACTTAGTCTT
260 CAAACATGAATAGTCATACTA-ATCCCCATTCTTTTC-AGGATTAGGCACCATAAACTTAGTCTT
* ** *
318768 CTCAGGAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTT
323 CTAATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTT
* * **
318833 GTAAAGTCTAAGTTTGTGCCTCAATTGTGACAACCATGGATTCTAGTAATGATCTTCATTCTTTT
388 GTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTT
*
318898 TGTGATTAGGCACTATTAACACATT
453 TGTGATTAGGCACTATAAACACATT
* * * *
318923 CTCCTCGTTAGGATAAATGATATTGAAGATTTTCTTTTTCATGAAAATCTTTTCCTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * *
318988 TTCCTGAAAATC-ATAGTTCATCACTTAAAAAAGGCTAGCATTGATTCTCATAAC-GATCTCTAT
66 TTCCTTAAAATCAAT-GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAG-TCTCCAC
* * * *
319051 TCTTTTCATGATTGGGAACC-AGAAACACATTCCTTTCATTAGGATACATGACAGTGATGATTTG
129 TCTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTG
* * *
319115 GTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATTAG
194 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
319180 GCAAACATGAATTTTTGTAAGAAAGGCTTAAACTAAACCCCATTCTTTTCTA-GATTAGGCACCT
259 ACAAACATGAA------T-----A-G-TCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCA
* **
319244 TAAACTTAGTCTTCTCAGGAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTT
310 TAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTT
* * *
319309 CCCACAAATTTTTGTAAAGTCTAAGTTTGTGCCTCAATTGTGACAACCATGGATTCTAGTAATGA
375 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
**
319374 TCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
440 TCTTCATTCACTTTGTGATTAGGCACTATAAACACATT
* * *
319412 CTCCTCGTTAGGATAAATGATATTGAAGATTTTCTTTTTCATGAAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * *
319477 TT-CTTAAAAATCAATGTTCAACCTTTAAATAAGG-TA--ATTGATTCCCATAACAGTCTCCAGT
66 TTCCTT-AAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACT
* * * * * * *
319538 TTTTTCAAGATTAGGAACCAAAAAACACATTTCTTTCATTAGGATATTTGACGTTGATGCTGTGG
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* ** *
319603 TGTGGCAAG-AAAGCATTTCTTTCAATTGCTTTTT-ATAGAATCAAAGTTTGTCTGTTAAATAAG
195 TGTCGCAAGAAAAGCATTTCTTTCAACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* *
319666 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGA-TAGGCACCATAAACTTAGTCCTC
259 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTC
* * * * * * * *
319730 TTATAAGGATGCACGATATTGATGCTTTGGTTTTGAAACAAATGCTTTCTTCCTAACAATTTTTT
324 TAATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTG
** * * *
319795 TAAAGTCTAAGTTTATGCCTCAATTGTAACAAACATGGATTCCAGTAATGACCTTCATTCACTTT
389 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT
* * * *
319860 GTTATTAGGCACAATAAATACGTT
454 GTGATTAGGCACTATAAACACATT
* * * * *
319884 CTCCTCATTAGGATAAATGACACTGATAATTTGCTTTTGTATGAAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * *
319949 TTCCTTAAAATCAAAGCTCATCCCTTAAATAATGCAAGCATTGATTCTCGTAACACTCTCCACTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
*
320014 TTTTCAAGATTGGGAACCAAAAAATACATTCCTTTCATTAGGATATATGACATTGATGATTTGGT
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGGT
* * * * * * * *
320079 GTCACAAGAAAAGCATTTGTTCCAATCATTTTTTATGGAATCAAAGTTTATCTCTTAAATAAGAC
196 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * * *
320144 AAATATGAATAATCATACTAATCCTCTTTCTTTTCGGGATTTGGCACCATAAACTTAGTCTTCTA
261 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTA
* * * * * *
320209 ATAAGGATGCATGAAATTGAGGCTTTGGTTTCGTAAGAAAGGCTTTCATCCCACCAATTTTTG-A
326 ATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * *
320273 AA-TGCATAAGTTCATGCCTCAATTGTGACAAACAAGGATTCTAGTAATGATCTTCATGCATTTT
391 AAGT-C-TAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT
* * **
320337 GTGATTAAGCACAATAAATGCATT
454 GTGATTAGGCACTATAAACACATT
* * * *
320361 CTCCTTATTAGGATAAATGATATGGAAT-ATTTTCTTTTGCATTATAATCTTTTCTTTGCCCTAT
1 CTCCTCATTAGGATAAATGATATTG-ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * *
320425 TTTCCTAAAAATCAATGTTCATCCTTTAATTAAGGCAAGCATTGATTCTCATAACAGTCTCCACT
65 TTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACT
* *
320490 CTTTTCAAGATTGGGAACCAAAAAACACATTCATTTCATTAGGATATATGACATTGATGCTTTGG
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* * * *
320555 TGTCCCAAGAAAAGCATTTCTTTCAACTGTTTTTTATAGAATCAAAGTTTGTCTCTTGAATAAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * *
320620 CAAACATGAATAGTCATACTAATCCTCAATCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCT
260 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* * **
320685 AATAAGGATACACGATATTGTTGCTTTGGTTTCGTAAGAAAGGCTTTCCTT-CTGCCAATTTTTG
325 AATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTT-CTTCCCACCAATTTTTG
* ** * * ** *
320749 CAAAGTCTAAGTTCGTGCCT-AAGTTGTGACAAATGTGGATTCTGGTAATGTTCTTCGCTCCCTT
389 TAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTT
*
320813 TGTGATAAGGCACTATAAACACATT
453 TGTGATTAGGCACTATAAACACATT
** * *
320838 CTCCTTGTTAGGATAAATGATATGGAAGATTTTCTTTTGCATGAAAAT-TTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * * *
320902 TTCCTAAAAATCAATGTTCTTCCCTAAAATAATGCAAACATTGATTCTCGTAACAGTTTCCACTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* * * * *
320967 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTTATTTGGATATAAGACATTAATGCTTTGGT
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGGT
* * * *
321032 GTCACAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAAT-AGAA
196 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
**
321096 AACACATGAATAGTCATACTAATCCCCAACCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
261 AA-ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* * * *
321161 AATAAAGATACACGATATTGATGCTTTGGCTTT-GTAAGAAAGACTTTCTTCCCATCAATTTTTG
325 AATAAGGATACACGATATTGATGCTTTGG-TTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * *
321225 CAAAGTCTAAGTTCATGCCT-AAGTTGTGAAAAACATGGATTCTAGTAATGTTCTCCATTC-CTT
389 TAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCAC-T
*
321288 TTGTGATTAGGCATTATAAACACATT
452 TTGTGATTAGGCACTATAAACACATT
* * * ** * * *
321314 CTCCTAATTAAGATAAATGATATTG--G-TTTTTTTTTTTATAAAAATCTTTACTTTGCCTTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * *
321376 TT-CTTAAAAATCAATGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAATAATGTCCACT
66 TTCCTT-AAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACT
* * *
321440 CTTTTCAAGATTAGGAACCAAAAAACACATTCCTTACATTAGGATATATGACAATGATGATTTGG
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
* * * * *
321505 TGCCACCAGAAAAGCATTTCTTTCAACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * **
321570 TAAACATGAATAGTCATACTAATCCCCAATCTTTTTAGGATTAGGCAATATAAACTTAGTCTTCT
260 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
***
321635 AATAAGGATACACGATATTGATGCTTTGGTTTC-ATAAGAAAGGCTTTCTTCTTGCCAATTTTTG
325 AATAAGGATACACGATATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * *
321699 CAAAGTCTAATTTCGTGCCT-AAGTTGTGACAAACATGGATTCTAGTGATGTTCTTCATTCCCTT
389 TAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTT
*
321763 TGTGATTAGGCACTATAAATACATT
453 TGTGATTAGGCACTATAAACACATT
* * *
321788 CTCCTCATTAAGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * *
321853 TTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGTAAGCATTGATTCTCATAACAGTCTCCATTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
* * *
321918 TTTTCATGATTGGGAACC-AAAAACACATTCCTTTC-TGTAGGATACATGACATTGATGCTTTGG
131 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCAT-TAGGATATATGACATTGATGATTTGG
* * * * *
321981 TATTGCAAGAAAAGCATTTTTTTTCAACCGTTTTTGATAAAATCAAAGTTTGTCTCTTATATAAG
195 TGTCGCAAGAAAAGCA-TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
322046 GCAAACATGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGTACCTTAAACTTAGTCTT
259 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACTTAGTCTT
* * * * * *
322110 CTCATAAGGATATAACGATATTGGTGCTTTGGTTTCGAAATAAAGGCTTTCTTTCGACCAATTTT
323 CTAATAAGGATA-CACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTT
* * * * * **
322175 TGTAAAGTCTAAGTTTGTGCATCAATTGTGACAACCATGGATTCTAGTAATGATGTACATTCTTT
387 TGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACT
* **
322240 TTGTGATTAGGCACTGTAAACGTATT
452 TTGTGATTAGGCACTATAAACACATT
* * *
322266 CTCCTCATTAGGATAAATGATATGGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGTCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
** *
322331 TTCCCAAAAATCAATGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCATAAACAGTCTCCACT
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCAT-AACAGTCTCCACT
* ** * * *
322396 TTTTTCAAGATTGGGAACCAAAAAATGCATTTCTTTCATTAGGATATAAGA-ATTGATGCTTTGG
130 CTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGG
** * * *
322460 TGTTACATGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAATGTTTGTCTCTTAAATAAGA
195 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
322525 TAAACATGAATAGTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
260 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* * * * * *
322590 AAAAAGGATACACGATATTGATGTTTTGGTTTCGTAAGAAAGGCTTTCTTCCTACTAATTTTTGC
325 AATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGT
* ** * *
322655 AAAGTC-AAGTTCGTGCCT-AAGTTGTGACAAACATAGATTCTAGTAATTTTCTTCACTCCCTTT
390 AAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT
322718 GTGATTAGGCACTATAAACACATT
454 GTGATTAGGCACTATAAACACATT
* * * * * * * * *
322742 CCCCACGTTAGGATAAATGATATGGAAGATTTTTTTTTCCACGAAAATCTTTTCTTTGTCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* *
322807 TTCC-TAAAATCAATGTTCATCCTTTAAATAGGGC-AGACATTGATTCTC
66 TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAG-CATTGATTCTC
322855 GTTACAGTGA
Statistics
Matches: 7912, Mismatches: 1120, Indels: 263
0.85 0.12 0.03
Matches are distributed among these distances:
472 404 0.05
473 278 0.04
474 979 0.12
475 1192 0.15
476 1976 0.25
477 1927 0.24
478 635 0.08
479 60 0.01
480 25 0.00
481 1 0.00
482 1 0.00
486 88 0.01
487 52 0.01
488 6 0.00
489 286 0.04
490 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (477 bp):
CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
TTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTC
TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGACATTGATGATTTGGT
GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTA
ATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
AAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGT
GATTAGGCACTATAAACACATT
Found at i:318905 original size:158 final size:159
Alignment explanation
Indices: 318743--319399 Score: 346
Period size: 159 Copynumber: 4.1 Consensus size: 159
318733 TTCTTTTCTA
*
318743 GATTAGGCACCTTAAACTTAGTCTTCTCAGGAGGATACATGATATTGATGCTTTGGTTTCGAAAG
1 GATTAGGCACCTTAAACTTAGTCTTCTCAGGAGGATACATGATATTGATGATTTGGTTTCGAAAG
*
318808 AAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGC-CTCAATTGTGACAACCATG
66 AAAAGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGT-CACTCAATTGTGACAACCATG
318871 GATTCTAGTAATGATCTTCATTCTTTTTGT
130 GATTCTAGTAATGATCTTCATTCTTTTTGT
* * * * * * ** ***
318901 GATTAGGCACTATTAACAC--ATTCTCCTC-GTTAGGATAAATGATATTGAAGATTTTCTTTTTC
1 GATTAGGCAC-CTTAA-ACTTAGTCTTCTCAG-GAGGATACATGATATTGATGATTTGGTTTCGA
* * * * * * ** * **** * *
318963 ATGAAAATCTTTTCCTT-GC-CCTATTTTCCTG-AAAATC-ATAGTTCATCACTTAAAAAAGGCT
63 AAGAAAAGCATTT-CTTCCCACCAATTTT--TGTAAAGTCTA-AGTTTGTCACTCAATTGTGACA
* * * **
319024 AGCATTGATTCTCA-TAACGATC-TCTATTCTTTTCAT
124 ACCATGGATTCT-AGTAATGATCTTC-ATTCTTTTTGT
* * ** ** * ** * * * *
319060 GATTGGGAACCAGAAACACATTCCTT-TCATTAGGATACATGACAGTGATGATTTGGTGTCGCAA
1 GATTAGGCACCTTAAACTTAGT-CTTCTCAGGAGGATACATGATATTGATGATTTGGTTTCGAAA
* * * * * *
319124 GAAAAGCATTTCTTTCAACC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTAAAATTAG-G-CAAA
65 GAAAAGCATTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTTGTCACT-CAATT-GTGACAAC
* * * * *
319185 CATGAATTTTTGTAA-GAAAGGCTTAAACTAAACCCCATTCTTTTCT-A
126 CATGGATTCTAGTAATG--A----T---CT-----TCATTCTTTT-TGT
* *
319232 GATTAGGCACCTTAAACTTAGTCTTCTCAGGAGGATACACGATATTGATGCTTTGGTTTCGAAAG
1 GATTAGGCACCTTAAACTTAGTCTTCTCAGGAGGATACATGATATTGATGATTTGGTTTCGAAAG
* *
319297 AAAGGC-TTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTTGTGC-CTCAATTGTGACAACCATG
66 AAAAGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGT-CACTCAATTGTGACAACCATG
319360 GATTCTAGTAATGATCTTCATTCTTTTTGT
130 GATTCTAGTAATGATCTTCATTCTTTTTGT
319390 GATTAGGCAC
1 GATTAGGCAC
319400 TATAAACACA
Statistics
Matches: 355, Mismatches: 96, Indels: 96
0.65 0.18 0.18
Matches are distributed among these distances:
157 6 0.02
158 82 0.23
159 124 0.35
160 19 0.05
163 2 0.01
164 1 0.00
166 1 0.00
167 1 0.00
169 1 0.00
170 8 0.02
171 41 0.12
172 68 0.19
173 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (159 bp):
GATTAGGCACCTTAAACTTAGTCTTCTCAGGAGGATACATGATATTGATGATTTGGTTTCGAAAG
AAAAGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTCACTCAATTGTGACAACCATGG
ATTCTAGTAATGATCTTCATTCTTTTTGT
Found at i:324512 original size:12 final size:11
Alignment explanation
Indices: 324493--324564 Score: 55
Period size: 12 Copynumber: 6.5 Consensus size: 11
324483 AGAGAAAAAA
324493 GAGATAGGAGG
1 GAGATAGGAGG
324504 GATGATAGGAGG
1 GA-GATAGGAGG
*
324516 AAAGATAGGA--
1 -GAGATAGGAGG
324526 GAGAT-GGTA--
1 GAGATAGG-AGG
324535 GAGATAGGAGG
1 GAGATAGGAGG
324546 GATGATAGGAGG
1 GA-GATAGGAGG
324558 AGAGATA
1 -GAGATA
324565 AGAGAGATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
8 2 0.04
9 11 0.22
10 2 0.04
11 4 0.08
12 29 0.57
13 3 0.06
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:324524 original size:24 final size:23
Alignment explanation
Indices: 324494--324600 Score: 74
Period size: 24 Copynumber: 5.0 Consensus size: 23
324484 GAGAAAAAAG
324494 AGATAGGAGGGATGATAGGAGGAA
1 AGATAGGAGGGATGATAGGAGG-A
324518 AGATAGGA--GA-GAT-GGTA-G-
1 AGATAGGAGGGATGATAGG-AGGA
324536 AGATAGGAGGGATGATAGGAGGA
1 AGATAGGAGGGATGATAGGAGGA
* * *
324559 GAGATAAGAGAGATAATA-GA-G-
1 -AGATAGGAGGGATGATAGGAGGA
*
324580 AG--AGGATGGATGATAGGAGGA
1 AGATAGGAGGGATGATAGGAGGA
324601 GAAGAGAAGA
Statistics
Matches: 65, Mismatches: 7, Indels: 25
0.67 0.07 0.26
Matches are distributed among these distances:
18 17 0.26
19 2 0.03
20 8 0.12
21 8 0.12
22 6 0.09
23 2 0.03
24 22 0.34
ACGTcount: A:0.42, C:0.00, G:0.44, T:0.14
Consensus pattern (23 bp):
AGATAGGAGGGATGATAGGAGGA
Found at i:324542 original size:42 final size:42
Alignment explanation
Indices: 324483--324610 Score: 166
Period size: 42 Copynumber: 3.0 Consensus size: 42
324473 TAGCCCTCAA
* * *
324483 AGAGAAAAAAGAGATAGGAGGGATGATAGGAGGAAAGATAGG
1 AGAGATAATAGAGATAGGAGGGATGATAGGAGGAAAGATAAG
** *
324525 AGAGATGGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
1 AGAGATAATAGAGATAGGAGGGATGATAGGAGGAAAGATAAG
* * *
324567 AGAGATAATAGAGAGAGGATGGATGATAGGAGGAGAAGAGAAG
1 AGAGATAATAGAGATAGGAGGGATGATAGGAGGA-AAGATAAG
324610 A
1 A
324611 AAATGGAAGT
Statistics
Matches: 73, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 66 0.90
43 7 0.10
ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12
Consensus pattern (42 bp):
AGAGATAATAGAGATAGGAGGGATGATAGGAGGAAAGATAAG
Found at i:331350 original size:476 final size:475
Alignment explanation
Indices: 329568--338030 Score: 10507
Period size: 476 Copynumber: 17.8 Consensus size: 475
329558 GTTGTCATCA
* * * *
329568 AACAGTCTCCACTCTTTTCAAGTTTGGGAACCAAACAACACATTTCTTTCATTAGGATATTTGAC
1 AACAGTCTCCACTCTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * *
329633 ATTGATGCTTCGGTGTCACAAGAAAAGCATTTCTTTCAATCGGTTTTT-ATAGTATCAAAGTTTG
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAA-CCGTTTTTGATAGAATCAAAGTTTG
* *
329697 TCTCTTAAATAAGACAAACATGAATAGTCTTACTAATCC-CAAATCTTTTC-AGTATTAGGCACC
129 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC-ATTCTTTTCTAG-ATTAGGCACC
* * * * * *
329760 ATAAACTTAATTTTCTAATAAGGGATGCACGATGTTGATGCTTTGGTTTTGTAAGAAAGGCTTTC
192 ATAAACTTAGTCTTCTCATAA-GGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTC
* * * **
329825 TTCTCGCCAATTTTTGCAAAGTCTAAGTTCGTGCCT-AAGTTGTGACAAATGTGGATTCTAGTAA
256 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAA
* * * * *
329889 TGTTCTTCATTCCCTTTGTGGTTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATT
320 TGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATT
* * * **
329954 GATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTG
385 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCC
*
330019 TTATATAAGGCAAGCATTGATTCTCGT
449 TTAAATAAGGCAAGCATTGATTCTCGT
* * * * * * *
330046 AACAATCTCCATTCTTTTCATGATTGGGAACCAGAAACACATTCCTTTCAGTAGGATACATGACA
1 AACAGTCTCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGACA
* ** * * * *
330111 TTGATGCTTT-GTATTACAAGAAAAGCATTTTTTTCAACCATTTTTTATAAAATCAAAGTTTGTC
66 TTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTC
* * * * *
330175 TCTTATATAAGGCAAACATGAATAGTCATACTAATCCCCATTCTTTTCTAGATTAGGTACCTTAA
131 TCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCATAA
*
330240 ACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTT-TTCCC
196 ACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCC
* * * * *
330304 ACCAATTTTTGTGAAGTCTAAGTTTGTGCGTTAATTGTGA-TAACTATGGATTCTAGTAATGATG
261 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC-ATGGATTCTAGTAATGAT-
* ** * * * *
330368 C-ACATTCTTTTTGTGATTAGGCACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTAATG
324 CTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * *
330432 TTTTTCTTTTGCTTGGAAATCTTTTCCTTGCCCTATTTTTCATAAAATTAAAGTTCATCCCTTAA
389 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTAAAATCAATGTTCATCCCTTAA
*
330497 ATAAGGCAGGCATTGATTCTCGT
453 ATAAGGCAAGCATTGATTCTCGT
** * * * * * *
330520 AACAGTCTCCACTCTCCTCAAGATTAGGAACTAGAAACACATTCCTTTCGTTAGGATACATGACG
1 AACAGTCTCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGACA
* * * * *
330585 TTG-TCACTTTGGTATCCCAAGAAAAGCATTT-TTTCAACCGTTTTTGATAAAATCAAAGTTTGC
66 TTGAT-GCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
330648 CT-TTCAAAAAAGACAAACATGAATAATCATACTAATCC-CTATTC-TTTGTAGGGTTAGGCACC
130 CTCTT-AAATAAGACAAACATGAATAGTCATACTAATCCTC-ATTCTTTTCTA-GATTAGGCACC
* * *
330710 ATAAACTTAGTCTTCT-AGAAAGGATACATGATATTGAAGCATTT-GTTTCGTAAGAAAGGCTTT
192 ATAAACTTAGTCTTCTCA-TAAGGATACACGATATTGATGC-TTTGGTTTCGTAAGAAAGGCTTT
* * * * *
330773 TTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCATCAGTTGTGACAAAC-TAGGATTCTAGTA
255 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT-GGATTCTAGTA
*
330837 ATGATCTTCATTCACTTTGTGATTAAGCACTATAAACATATTCTCCTCATTAGGATAAATGATAT
319 ATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATAT
* * * **
330902 TGATGGTATTCTTTTGCAGGGAAATCTACTCTTTGCCCTATTTTCCTAAAATCCAATGTTCATCC
384 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTAAAAT-CAATGTTCATCC
330967 CTTAAATAAGGCAAGCATTGATTCTCGT
448 CTTAAATAAGGCAAGCATTGATTCTCGT
* *** * * * * *
330995 AACAGTCTCCATTCTTTT-AATGATTGGGAACTGGAAACACATTCTTTTTAGTAGGATACACGAC
1 AACAGTCTCCACTCTTTTCAA-GATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * * * *
331059 ATTGACGCTTTGATATTGCAAGAAAAGCATTTTTTTCAACCATTTTTGATAAAATCAAAGTTTGT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * *
331124 CTCTTATATAAGGCAAACAAGAATAGCCATACAAATCCCCATTCTTTTCTAGATTAGGTACCTTA
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCATA
* * * * *
331189 AACTTAGTCTTCTCATAAGCATACATGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCT
195 AACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCC
* * ** * *
331254 CACCAATTTTTTTAAAGTCTAAGTTTGTGTGTCAATTGTGACAACCATGGATTCTAGTAATGATG
260 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
* ** * *
331319 TACATTCTTTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
325 TTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGA
* * * *
331384 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTGCCATAAAATTAAAGTTTATCCCTTAAA
390 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCCTTAAA
*
331449 TAAGGCAAGCATTGATTCTCAT
454 TAAGGCAAGCATTGATTCTCGT
* * *
331471 AATAGTCTCCA-TGCTTTTCAAGATTGGGAACCAAAAAACACATTGCTTTCATTAGGATAT-TCA
1 AACAGTCTCCACT-CTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGA
* * * *
331534 CATTGACGATTTGGTGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTA
64 CATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG
*
331599 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCA
129 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTA-GATTAGGCACCA
* * * * *
331663 TAAACTTAGTCTTCTCATAAGGATAAATGATATTGATGCTTTCGTTTTGAAAGAAAGGCTTTCTT
193 TAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTT
* * ** * * * *
331728 CCTAACAATTTTCATAAAGTCTAAGTTCATGCCGCAATTGTAACAAACATGGATTCTAGTAATGC
258 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
* * * * *
331793 TCTTCATTCACTTCGTTATTAGGCA-TAAGAAACACATTCTCCTCATTAGGGTAAATGATATTGA
323 TCTTCATTCACTTTGTGATTAGGCACT-ATAAACATATTCTCCTCATTAGGATAAATGATATTGA
* * **
331857 TGATTTGCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAATGTTCATCTTTT
387 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-AAAATCAATGTTCATCCCTT
331922 AAATAAGGCAAGCATTGATTCTCGT
451 AAATAAGGCAAGCATTGATTCTCGT
* *** *
331947 AATAGTCTCCACTCTTTTCAAGA-TCCCAACCAAAAAACACATTCCTTTCATTGGGATATATGAC
1 AACAGTCTCCACTCTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * * * * *
332011 ATTGACGATTTGGTGCCGTAAGAAAAGCATTTTTTTCAATCGTTTTTTATAAAATCAAAGTTTGT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * *
332076 CTCTTAAATAAGACAAACATAAATAATCATACTAATCCTCATTCTTTTC-AGGATTTGGCACCAT
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTA-GATTAGGCACCAT
* * * * *
332140 AAACTTAGTCTTCTAATAAGGATGCACGGTATTGAAGCTTTGGTTTCATAAGAAAGGCTTTCTTC
194 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTC
* * * * *
332205 CCACCAGTTTTTGTAAAGCCTAAGTTTGTGCCTCAACTGTGAAAAAC-TAGGATTCTAGTAATGA
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT-GGATTCTAGTAATGA
* *
332269 TCTTCATTCAC-TTGTGATTAGGCACTACAAACATATTCTCCTCATTAGGATAAATGAAATTGAT
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGA-
* * * *
332333 TG-TATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTT
387 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTAAAATCAATGTTCATCCCTT
* *
332397 AAATAAGGCAACCATTGATTCTCAT
451 AAATAAGGCAAGCATTGATTCTCGT
* * * * *
332422 AGCACTCTCAACTCTTTTCAAGATTGGGAACCAAAAAAGACATTCCTTTTATTAGGATATATGAC
1 AACAGTCTCCACTCTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * *
332487 ATTGATGATTTGGTGTCACAAGAAATGCATTTC-TTCTAATCGCTTTTT-ATAGAATCAAACTTT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTC-AACCG-TTTTTGATAGAATCAAAGTTT
* * *
332550 GTCTTTTAAATTAA-ACAAACATGAATAATCATACTAATCCTCATTCTTTTC-AGGATTTGGCAC
128 GTCTCTTAAA-TAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTA-GATTAGGCAC
* * * * * *
332613 CATAAACTTAGTCTTCTAATAAGGATGCAGGAAATTGAAGCTTCGGTTTCGTAAGAAAGGCTTGT
191 CATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTT-T
* * * * *
332678 -TTTCCACCAATTTTTGAAAAGACTAAGTTCATGCCTCAATTGTGACAAACAAGGATTCTAGTAA
255 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAA
* * ** **
332742 TGATCTTCATTCATTTTGTGGTTAGGCACTATAAACGCATTCTCCTCATTAGGATAAATGATAAG
320 TGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATT
* * * * *
332807 GAAGATCTTCTTTTGCATGAAAATCTTTTGTTTGCCCTATTTTCCTAAAAATCAATGTTCATCCT
385 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-AAAATCAATGTTCATCCC
*
332872 TTAAATAAGGCAAGCATTAATTCTCGT
449 TTAAATAAGGCAAGCATTGATTCTCGT
* * * *
332899 AACAGTTTCCACTCTTTTCAAGATTGGGAACCAAAAAACACATTCTTTTCCTTAGGATATATAAC
1 AACAGTCTCCACTCTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * *
332964 ATTGATGGTTTGGTGTCGCAAGAAAAGCATGTCTCTCAACTGTTTTTTATAGAATCAAAGTTTGT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
333029 CTCTTAAATAAGACAAACATGAATAGCCATACTAATCCCCATTTTTTTC-AGGATTAGGCACTAT
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTA-GATTAGGCACCAT
* * * *
333093 AAACTTAGTCTTCTCATATGGATACACGATATTGACGCTTTTGTTTCGTAAAAAAGGCTTTCTTC
194 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTC
*
333158 CCAACC-ATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
259 CC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
* * * * * *
333222 TCTTCATTCACTTTATGTTTAGGCACCATAAACACATTTTCCTCATTAGGATAAATGATTTTGAT
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGAT
* * * * * *
333287 GATTTTCCTTTGTATGGAAATCTTTT-TTTGCCCCATTTTCCTAAAAATTATTGTTCATCCTTTA
388 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-AAAATCAATGTTCATCCCTTA
*
333351 AATAAGGCAAGTATTGATTCTCGT
452 AATAAGGCAAGCATTGATTCTCGT
* * *
333375 AACAGTCTCTACTCTTTTCAAGTTTGGGAACCAAAAAACACGTTCCTTTCATTAGGATATATGAC
1 AACAGTCTCCACTCTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * * *
333440 ATTGATGCTTTGGTGTCGCACGAAATGCATTTTTTTCAGCCATTTTTTATAGAATCAAAGTTTGT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
333505 CTCTTAAATAAGACAAACGTGAATAGTCATACTAATCCCCAATCTTTTC-AGTTCTAGGCACCAT
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGAT-TAGGCACCAT
* *
333569 AAACTTAGTCCTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTC
194 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTC
** * * * * * *
333634 CCGTCAATTTTTGCAAAGTTTAAGTTCGTACCT-AAGTTATGACAAACGTGGATTCTAGTAATGT
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGA
* * * * *
333698 TCTTCATTCTCTTTGTGATTAAGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTGAC
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
333763 GATTTGCTTTTGCATGAAAATCTTTTCTTTGCCCTTTTTTCTTAAAAATCAATGTTCATCCTTTA
388 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-AAAATCAATGTTCATCCCTTA
*
333828 AAAAAGGCAAGCATTGATTCTCGT
452 AATAAGGCAAGCATTGATTCTCGT
* *
333852 AACAATCTCTACTCTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATATATGAC
1 AACAGTCTCCACTCTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * ** * * *
333917 ATTGACGATTT-GTGACGCACGAAAAGCATTTCTTTCAATAGTTTTTTATAAAATCAAAGTTTAT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
333981 CTCAT-AATAAGAAAAACATGAATAATCATACTAATCCTCATTCTTTT-TAGGATTTGGCACCAT
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTA-GATTAGGCACCAT
* * * * * *
334044 AAACTTAGTCTTCTAATAAGGATGCACGGTATTGAAGCTTTGGTTTCATATGAAAGGCTTTCTTC
194 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTC
* * * * *
334109 CCACCAGTTTTTGTGAAGCCTAAGTTCATGCCTCAATTGTGACAAAC-TAGGATTCTAGTGATGA
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT-GGATTCTAGTAATGA
* * * * *
334173 TCTTCACTCACTTTGTGATTAGACGCTATGAATATATTCTCCTCATTAGGATAAATGATATTGAT
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
334238 G-TATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTATCCGTTA
388 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTAAAATCAATGTTCATCCCTTA
*
334302 AATAAGGCAACCATTGATTCTCGT
452 AATAAGGCAAGCATTGATTCTCGT
* * *
334326 AACACTCTCCACTCTTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAGGATAGATGGC
1 AACAGTCTCCACTCTTTTCAAGATTGGGAA-CAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * *
334391 ATAGATG-TTTGGTGTCACAAGAAAAGCATTTCTTTCAATCATTTTTTATAGAATCAAAGTTTGT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
334455 CTCTTAAATAAGACAAACATGAATAATCATACTAATCCCCAATCTTTT-TAGGATTAGGCACCGT
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTA-GATTAGGCACCAT
* *
334519 AAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTC
194 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTC
* * * * *
334584 TCGCCAATTTTTGTAAAGTTTAAGTTCGTGCCT-AAGTTGTGACAAACGTGGATTCTAGTAATGT
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATGA
* * * * * *
334648 TCTTCATTCTCTTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAGGATAAATGATATGGAC
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
334713 AATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTGAAATCAAAGTTCATTCCTTA
388 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCCTTA
334778 AATAAGGCAAGCATTGATTCTCGT
452 AATAAGGCAAGCATTGATTCTCGT
* ** ***
334802 AACAATCTCCACTCTTTTCAAGATTGGGAATGAAAAACACATTCCTTTCATTAGGATACGCGACA
1 AACAGTCTCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGACA
* * *
334867 TTGATGCTTTGATGTC-CTAAGAAAAGCATTTCTTCCAATCGTTTTTGATAGAATCAAAGTTTGT
66 TTGATGCTTTGGTGTCGC-AAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * *
334931 CTCTTAAATAAGACAAACACGAGTAGTCATACTAATCCTCATTCTTTTTTGGTTTAGGCATCATA
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCATA
* * * *
334996 AACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGGTATCGTAAGAAGGGCTTTCTTCC
195 AACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCC
* *
335061 CACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGGTC
260 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
* * ** * * * *
335126 TTCATTCATTTTGTGATTAGGCACTATAAGCGCATTTTTCTCATTAGGATAAATGATATTTAGGA
325 TTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGA
* * * ** * *
335191 TCTTCTTTTGCATGGAAATCTTTTTTTTACCCTATTTTTAGTAAAATCAATATTCTTCCCTTAAA
390 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTAAAATCAATGTTCATCCCTTAAA
*
335256 TAAGGCAAGCATTGATTCTCAT
454 TAAGGCAAGCATTGATTCTCGT
* *
335278 AACAGTCTTCC-C-CATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCAGTAGGATATATGA
1 AACAGTC-TCCACTC-TTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGA
* * * ** *
335341 CATTGATGCTTTGGTGTCGCAAAAAAAGCATTCCTATCAACCGTTTTTGATAGTTTCAAAGTTTA
64 CATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG
* *
335406 TCTCTTAAATAAGACAAACATGAACAGTCATACTAATCCTCATTCGTTTT-TGGATTAGGCACCA
129 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTC-TTTTCTAGATTAGGCACCA
*
335470 TAAACTTAGTTTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTT
193 TAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTT
* * * * *
335535 CCAACCAATTTTTGTAAAGTCTAAGTTCATGCCGCAATTGTGGCAAACATGGATTCTAGTAGTGA
258 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
* * *
335600 TCTTCATTCACATTGTGATTAGGCACTATGATCATATTCTCCTCATTAGGATAAATGATATTGAT
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
335665 GATCTTCTTTTGCATGGAAAAC-TTTCTTTGCCCTATTTTCCATAAAATCAATATTCTTCCCTTA
388 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCCTTA
*
335729 AATAAGGCAAGCATTGATTCTTGT
452 AATAAGGCAAGCATTGATTCTCGT
* * * * * *
335753 AATAGTCTTCCCCT-TTTTCAAGATT-GCAACCAAAAACACATTCCTTTTAGTAGGATATATGAC
1 AACAGTC-TCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * * * *
335816 ATTGATGCTTTAGTGTCGCAAAAAAAAAAACAATTCTATCAACCATTTTTGATAGTATCAAAGTT
65 ATTGATGCTTTGGTGTCGC---AAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTT
* *
335881 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCTCATTCTTTTCTGGATTAGGCACC
127 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACC
* * * * *
335946 ATAAACTTAGTCTTTTCATAAGGATACACAATATTGATGCTTTGATTTTGTAAGAAAGGTTTTCT
192 ATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCT
* * *
336011 TTCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACATGGATTCTAGTAATG
257 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
** *
336076 ATCTTCATTCACGCTGTAATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGA
322 ATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
336141 TGATCTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATATTCCATAAAATCAATATTCTTCCATT
387 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCCTT
* *
336206 AAATAAGGTAAGCATTGATTCTCAT
451 AAATAAGGCAAGCATTGATTCTCGT
* *
336231 AACAGTCTTCC-CTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCAGTAGGATATATGAC
1 AACAGTC-TCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * * * *
336295 ATTGACGCTTTGGTGTCGCAAAAAAAGCATTTCTATGAACCGTTTTTGATAGTATCAAAGTTTAT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* *
336360 CTCTTAAATAAAACAAACATGAATAGTCATACTAATCCTCATTCTTTTCT-GGTTAGGCACCATA
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCATA
** *
336424 AACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCGAGAAAGGCTTTCTTCT
195 AACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCC
* * * *
336489 TACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACATGGATTGTAGTAAAGATC
260 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
* * * * * *
336554 TTCATTTACTTTGGGATTAGGCACTATAAACAAAGTCTCCTCATTAGGATAAACGACATTGATGA
325 TTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGA
* * * * *
336619 TTTTCTGTTGCATGGAATTCTTCTCTTTGCCTTATTTTCCTTAAAATCAA-GTTCATCCTTTAAA
390 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCCTTAAA
336683 TAAGGCAAGCATTGATTCTCGT
454 TAAGGCAAGCATTGATTCTCGT
* * * *
336705 AATAGTCTCCACTCTTTTC-AGTATTGGGAACCAAAAACACATTCCTTTCATTAGGATATGTGGC
1 AACAGTCTCCACTCTTTTCAAG-ATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * *
336769 ATTGATGCTTTGGTGTCACAAAAAAAGCATTTCTTTCAACCATTTTTGATATAATCAAAGTTTGT
65 ATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
336834 CTCTAAAATAAGACAAACATGAATAGTCACACTAATTCTTATACTTTT-TAGGATTAGGCACCAT
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTA-GATTAGGCACCAT
* * *
336898 AAACTTAGTCTTCTCATAAGGATACACGATATTGAAT-CTTTTGTTTCATAAGAAAGGCTTTTTT
194 AAACTTAGTCTTCTCATAAGGATACACGATATTG-ATGCTTTGGTTTCGTAAGAAAGGCTTTCTT
* * * *
336962 CCCACAAATTTTGGTAAAGTCTATGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGA
258 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
* * * *
337027 TCTGCATTCACGTTGTGATTAGGCACTACAAACATATTCTCCTCATTAGGATAAATGATATTGAA
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
337092 GATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCATAACATCCATATTCTTCCCTTA
388 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCCTTA
337157 AATAAGGCAAGCATTGATTCTCGT
452 AATAAGGCAAGCATTGATTCTCGT
* * * * *
337181 AATAGTCTTCTCTCTTTTCAAGATTGGGAACTAAAAACACATTCCTTTCATTAAGATATATGACA
1 AACAGTCTCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGACA
* * * *
337246 TTGCTGCTTTGGTGTCGCAAAAAAATGCATTTCTATCAACCGTTTTT-ATAGTATCAAAGTTTGT
66 TTGATGCTTTGGTGTCGCAAGAAAA-GCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * *
337310 CTCTTAAATAAGTCAAACATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATA
130 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCATA
**
337375 AACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTATAAGAAAGGCTTTCTTCC
195 AACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCC
* * * * * *
337440 CACCAATTTTGGAAAAGTCTACGTTTGTGCATCAAATT-TGACAAACATGGATTCTAGTAACGAT
260 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC-AATTGTGACAAACATGGATTCTAGTAATGAT
* * * * *
337504 CATCATTCACTTTGTGATTAGGCAGTATAAACTTATTCTCCTCATGAGGATAAATGATATGGATG
324 CTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * *
337569 ATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTCAAATCAAAGTTCATTCGTTAT
389 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAATGTTCATCCCTTAA
337634 ATAAGGCAAGCATTGATTCTCGT
453 ATAAGGCAAGCATTGATTCTCGT
* * * ***
337657 AACACAT-TCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGAC
1 AACA-GTCTCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGAC
* * * *
337721 ATTGATGCTTTGATGAT-GCAAGAAAAGCGTTTCTTCCAATCGTTTTTGATAGAATCAAAGTTTG
65 ATTGATGCTTTGGTG-TCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG
* * * * *
337785 TCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTAATTCTTTTTTGGATTAGGCACCAT
129 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCAT
* * ** * * *
337850 AAACTTAGTATTTTCATAAGGATACAAAATAATGATGGTTTGGTTTCGTAAGAAGGGCTTTCTTC
194 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTC
* *
337915 CCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAGTGGA
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAAT-GA
* * * *
337980 -CTTCATTCATTTTCTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
323 TCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGAT
338031 TCTCGCAGAA
Statistics
Matches: 6965, Mismatches: 914, Indels: 214
0.86 0.11 0.03
Matches are distributed among these distances:
473 21 0.00
474 810 0.12
475 1527 0.22
476 3428 0.49
477 1013 0.15
478 113 0.02
479 53 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (475 bp):
AACAGTCTCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATATATGACA
TTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTC
TCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCATAA
ACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCT
TCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGAT
TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTAAAATCAATGTTCATCCCTTAAATA
AGGCAAGCATTGATTCTCGT
Found at i:338253 original size:267 final size:266
Alignment explanation
Indices: 337771--338294 Score: 854
Period size: 267 Copynumber: 2.0 Consensus size: 266
337761 CGTTTTTGAT
337771 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTAATTCTTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTAATTCTTTTTT
*
337836 GGATTAGGCACCATAAACTTAGTATTTTCATAAGGATACAAAATAATGATGGTTTGGTTTCGTAA
66 GGATTAGGCACCATAAACTTAGTATTCTCATAAGGATACAAAATAATGATGGTTTGGTTTCGTAA
* * * *
337901 GAAGGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
131 GAAAGGCGTTCTTCCCACCAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACATGG
* * *
337966 ATTCTAGTAGTGGACTTCATTCATTTTCTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
196 ATTCTAGTACTGGACTTCATTCATTTTCTAATTAGGCACTACAAACGTATTCTTCTCATTAGGAT
338031 TCTCGC
261 TCTCGC
* *
338037 AGAATCAAAGTTTGTCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAATCCTCATTCTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTAATTC-TTTT
* ** *
338101 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGT
64 TTGGATTAGGCACCATAAACTTAGTATTCTCATAAGGATACAAAATAATGATGGTTTGGTTTCGT
*
338166 AAGAAAGGCGTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACAT
129 AAGAAAGGCGTTCTTCCCACCAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACAT
* *
338231 GGATTCTAGTAACT-GTCTTCATTCATTTTGTAATTAGGCACTACAAACGTATTCTTCTCATTAG
194 GGATTCTAGT-ACTGGACTTCATTCATTTTCTAATTAGGCACTACAAACGTATTCTTCTCATTAG
338295 AATAAATGAT
Statistics
Matches: 238, Mismatches: 17, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
266 54 0.23
267 182 0.76
268 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (266 bp):
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTAATTCTTTTTT
GGATTAGGCACCATAAACTTAGTATTCTCATAAGGATACAAAATAATGATGGTTTGGTTTCGTAA
GAAAGGCGTTCTTCCCACCAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACATGG
ATTCTAGTACTGGACTTCATTCATTTTCTAATTAGGCACTACAAACGTATTCTTCTCATTAGGAT
TCTCGC
Found at i:339232 original size:158 final size:157
Alignment explanation
Indices: 338099--339689 Score: 446
Period size: 158 Copynumber: 10.1 Consensus size: 157
338089 CTCATTCTTT
* * * *
338099 TTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTT
1 TTTTGTGATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTT
* * * *
338163 CGTAAGAAAGGCGTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAA
66 CGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTACCTCAATTGAGACAAA
338228 CATGGATTCTAGTAACTGTCTTCATTC
131 CATGGATTCTAGTAACTGTCTTCATTC
* * * * * * **
338255 ATTTTGTAATTAGGCACTACAAACGTATTCTTCTCATTAGAATAAATGATATTGATGGTATTCTT
1 -TTTTGTGATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGT-TTGGT
* * ** * * * * *
338320 TTGCGT------GG---ACTTGCC-CT-ATTTTCCTAAAATCCAATGTTCAG-CCCTTAAAT-AA
64 TT-CGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAAT-CAAAGTTC-GTACCTCAATTGAG
* * * * * * *
338372 AGCAAGCATTGATTCTTGTAACAGGCTCCACTC
126 A-CAAACATGGATTCTAGTAACTGTCTTCATTC
* * * ** * * * * * * * * *
338405 TTTTCGAGATTGGGAACTGA-AAACACATTCCTT-TCTTTAGGATACTCTACATGGATGCTATGA
1 TTTT-GTGATTAGGCACT-ATAAACGTATT-CTTCTCATAAGGATACACGATATTGATGGTTTGG
** ** * * *** * * * * ***
338468 TGGCACAAGAAAAGCTTTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGT-CTCTTAAAAAAG
63 TTTCGTAAGAAAGGC-TTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTAC-CTCAATTGAG
* * *
338532 ACAAACATGAGTAGTCACACTAA-T-TC-TCATTC
126 ACAAACATG-G-ATTC-TAGTAACTGTCTTCATTC
* * * * *
338564 TTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGACGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * *
338629 TCGTACA-AAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTACCTCAATTGTGACA
65 TCGTA-AGAAAGGCTTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTACCTCAATTGAGACA
* *
338693 AACATAGATTCTAGT-AGTGGTCATT-ATTC
129 AACATGGATTCTAGTAACT-GTC-TTCATTC
* * * * * * **
338722 ATTTTGTGATTAGGCATTATAATCGTATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTT
1 -TTTTGTGATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * * * * * ** * * * * *
338787 TTGCATGGAAA-TCTTTTCTGT-ACTCT-TTTTTCCTTAAAATCAAAGTTCCTTCCTTAAATAAG
65 TCGTA-AGAAAGGC-TTTCT-TCCCACTAATTTT-GGTAAAATCAAAGTTCGTACCTCAATTGAG
* * * * * *
338849 GCAAGCATAGATTCTCGTAACAGT-TTCCACTC
126 ACAAACATGGATTCTAGTAACTGTCTT-CATTC
* * * * * ** * * * * ***
338881 TTTTCGAGATTGGGAACCGA-AAGCACATTCCTT-TCATTAGGGATACGCAACATTGACCCTTTG
1 TTTT-GTGATTAGGCA-CTATAAACGTATT-CTTCTCA-TAAGGATACACGATATTGATGGTTTG
* * * * * *** * ** * * *
338944 ATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAAAATCAAAGTTTATATCTTAAAT-AG
62 GTTTCGTAAGAAAGGC-TTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTACCTCAATTGA-
* * * *
339008 GATAGAA-AT-GA--GTAGTCACACTAATCCTCATTCC
125 GACA-AACATGGATTCTAGT-A-ACT-GTCTTCATT-C
* * *
339042 TTTT-TGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * *
339106 TCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAA
65 TCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTACCTCAATTGAGACAA
339171 ACATGGATTCTAGTAACTGTCTTCATTC
130 ACATGGATTCTAGTAACTGTCTTCATTC
* * * * * *
339199 ATTTTGTGATTAGGCACTACAAACGTATTCTTCTCATTAGAATAAATGATATTGATGGTATT-CT
1 -TTTTGTGATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGT-TTGGT
* * * * ** * * * * * *
339263 TT--T--GCATGG---ACTTGCC-CT-ATTTTCCTAAAATCCAATGTTCAG-CCCTTAAATAAGG
64 TTCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAAT-CAAAGTTC-GTACCTCAATTGAGA
* * * * *
339318 CAAGCATTGATTCTCA-TAACAGTCTCCACTC
127 CAAACATGGATTCT-AGTAACTGTCTTCATTC
* * * ** * * * * * * * *
339349 TTTTCGAGATTGGGAACTGA-AAACACATTCCTT-TCGTTAGGATACGCTACATTGATGCTATGA
1 TTTT-GTGATTAGGCACT-ATAAACGTATT-CTTCTCATAAGGATACACGATATTGATGGTTTGG
** * * * *** * * * * ***
339412 TGGCGTAGGAAAAGCTTTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGT-CTCTTAAAAAAG
63 TTTCGTAAGAAAGGC-TTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTAC-CTCAATTGAG
* * *
339476 ACAAACATGAGTAGTCACACTAA-T-TC-TCATTC
126 ACAAACATG-G-ATTC-TAGTAACTGTCTTCATTC
* * * *
339508 TTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * * * * * *
339573 TCATAAGCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAA
65 TCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTACCTCAATTGAGACAA
*
339638 ACATGGATTGTAGTAA-TGATCTTCATTC
130 ACATGGATTCTAGTAACTG-TCTTCATTC
*
339666 ACTTTGTGATTAGGCACTATAAAC
1 -TTTTGTGATTAGGCACTATAAAC
339690 AAAGTCTCCT
Statistics
Matches: 990, Mismatches: 343, Indels: 201
0.65 0.22 0.13
Matches are distributed among these distances:
148 1 0.00
149 32 0.03
150 146 0.15
151 21 0.02
152 1 0.00
154 11 0.01
155 8 0.01
156 6 0.01
157 19 0.02
158 327 0.33
159 282 0.28
160 107 0.11
161 23 0.02
162 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (157 bp):
TTTTGTGATTAGGCACTATAAACGTATTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTT
CGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAATCAAAGTTCGTACCTCAATTGAGACAAA
CATGGATTCTAGTAACTGTCTTCATTC
Found at i:340063 original size:476 final size:477
Alignment explanation
Indices: 338037--343937 Score: 7437
Period size: 476 Copynumber: 12.4 Consensus size: 477
338027 GGATTCTCGC
*
338037 AGAATCAAAGTTTGTCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAATCCTCATTCTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTC-TTTT
*
338101 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGT
64 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
338166 AAGAAAGGCGTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACAT
129 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* * *
338231 GGATTCTAGTAACTG-TCTTCATTCATTTTGTAATTAGGCACTACAAACGTATTCTTCTCATTAG
194 GGATTCTAGTAA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAG
* * * *
338295 AATAAATGATATTGATGGTATTCTTTTGCGTGG--A------C-TTGCCCTATTTTCC-TAAAAT
258 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* ** * * *
338350 CCAATGTTCAGCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGGCTCCACTCTTTTCGAGAT
323 -CAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGAT
** * * * * * * * *
338415 TGGGAACTGAAAACACATTCCTTTCTTTAGGATACTCTACATGGATGCTATGATGGCACAAGAAA
387 TGGGAACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAA
338480 AGC-TTTTCTTCCAACCGTTTTTGAT
452 AGCATTTTCTTCCAACCGTTTTTGAT
* * *
338505 AGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTCTCATTCTTTTCT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
*
338570 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGACGGTTTGGTTTCGTAC
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTA-
* *
338635 A-AAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTACCTCAATTGTGACAAACATA
130 AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
* * * * *
338699 GATTCTAGTAGTGGTCATT-ATTCATTTTGTGATTAGGCATTATAATCGTATTCTTCTCATTAGG
195 GATTCTAGTAATGATC-TTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGG
* * * *
338763 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTGTACTCTTTTTTCCTTAAAATC
259 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
338828 AAAGTTCCTTCCTTAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTG
324 AAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTG
* * * * *
338893 GGAACCGAAAGCACATTCCTTTCATTAGGGATACGCAACATTGACCCTTTGATGTCGCAAGAAAA
389 GGAACCAAAAACACATTCCTTTCATTA-GGATACACGACATTGACGCTTTGATGTCGCAAGAAAA
338958 GCA-TTTCTTCCAACCGTTTTTGAT
453 GCATTTTCTTCCAACCGTTTTTGAT
* * * * * *
338982 AAAATCAAAGTTTATATCTTAAATAGGATAGAA-ATGAGTAGTCACACTAATCCTCATTCCTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTCTTTTT
339046 TGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTA
65 TGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTA
* * *
339111 AGAAAGGCTTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACATG
130 AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
* * *
339176 GATTCTAGTAACTG-TCTTCATTCATTTTGTGATTAGGCACTACAAACGTATTCTTCTCATTAGA
195 GATTCTAGTAA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGG
* *
339240 ATAAATGATATTGATGGTATTCTTTTGCATGG--A------C-TTGCCCTATTTTCC-TAAAATC
259 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-
* ** *
339295 CAATGTTCAGCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATT
323 CAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATT
** * * * * * * * *
339360 GGGAACTGAAAACACATTCCTTTCGTTAGGATACGCTACATTGATGCTATGATGGCGTAGGAAAA
388 GGGAACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAA
339425 GC-TTTTCTTCCAACCGTTTTTGAT
453 GCATTTTCTTCCAACCGTTTTTGAT
* * *
339449 AGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTCTCATTCTTTTCT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
*
339514 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCATAA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
* *
339579 GCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACATGG
131 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* ** * * * *
339644 ATTGTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAAAGTCTCCTCATCAGTAT
196 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
339709 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
261 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * *
339774 A-TTCATCCCTTAAATAAGCCAAGCATTGATTCTTGTAACAGTCTCCACTCTCTTCAACATTGGG
326 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGG
* * * * * *
339838 AACCAAAAACACATTCCTTTCATTAGGATATATGACATGGACGCTTTGGTGTCGTAAAAAAAGCA
391 AACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCA
*
339903 TTTTCTTTCAACCGTTTTTGAT
456 TTTTCTTCCAACCGTTTTTGAT
* * * * *
339925 AGAATCAAAGTTTATCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTTA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * * * *
339990 GGATTATGCACCATAAACTTAGACTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
* * * *
340055 GAAAGGCTTTCTTCCCACCAATTTTGGTAACGTCTATGTCCGTGCCTCAAATGTGACAAACATGG
131 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* * * * ** * * *
340120 ATTGTAGTAATGATCTTCATTCACGTTGTGATTGGGAACTACGAACATATTCTCCTCATTATGAT
196 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
* * * * * * *
340185 ACATGATATTGAAGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCATGACATC-A
261 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * *
340249 A-TATCCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCTCTCTTTTCAAGATTA
326 AGT-TCATT-CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTG
* * * * * * * *
340313 GGAACCAAAAACATAGTT-CTTTCATTAAGATATATGACACTGACGCTCTGGTGTCGCAAAAAAA
389 GGAACCAAAAACACA-TTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAA
340377 GCA-TTTCTAT-CAACCGTTTTTGAT
453 GCATTTTCT-TCCAACCGTTTTTGAT
* * * * *
340401 AGTACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCTCATTCTTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * * *
340466 GGATTAGGCACCATAAACTTAGTCCTCTCATAATGATATACGATATTGATGCG-TTGGTTTTGTA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTTCGTA
* * * **
340530 AGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAAACGTGACAAACATG
130 AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
* * ** * ** * *
340595 GACTCTAGTAATGATCATCATTCACAATGTGATAAGGCAGAATAAACTTATTC-TCTTATTAGGA
195 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGA
* * * *
340659 TAAATAATATGGATGATTTTCTTCTGCATGGAAATCTTTTTTTTTGCCCTATTTTCCTTAAAATC
260 TAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
340724 AAAGTTCATTCCTTAAATAAGGCAAACATTGACTCTCATACCAGTCTCCACTTTTTTCGAGATTG
324 AAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTG
* ** ** * *
340789 GGAACCAAAAATACATT-CTTTTTTTAGGATACGTGACATTGACGATTTGATGTCTCAAGAAAAG
389 GGAACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAG
* **
340853 C-TTTTCTTCCAACCATTTTCAAT
454 CATTTTCTTCCAACCGTTTTTGAT
* *
340876 AGAATCAAAGTTTATCTCTTAAATAACACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * * * *
340941 GGATTAGGCACCATAAAATTAGTCATCTCATAAGGATACAAGATATTAATGGTTTGGTTTTGTAA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
* * * * * * * *
341006 GAAA-GCTTCCTTCCAACCAATTTTGGTAAAGTCTATGGTCATGCCTCAACTGTGCCAAATATGG
131 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* * * ** ** * * * *
341070 ACTCTAATAATGATCTTTATTCACGCTGTGATTCTGCAATATAAACTTATTCTCCTCCTTAGGAT
196 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
* *
341135 AAATGATATGGATGATTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
261 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * *
341200 AGTTTATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGAG
326 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGG
** * * *
341265 AACCAAAAAACACATTCCTTTTTTTAGGATACGCGACATTGACGCTCTGATGTCACAAGAAAAGC
391 AACC-AAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGC
*
341330 A-TTTCTTCCAACCGTTTTTTAT
455 ATTTTCTTCCAACCGTTTTTGAT
* *
341352 AGAATCAAAGTTTGTCTCTTACATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTG
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * *
341417 GGGTTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTAGTTTCGTAA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
*
341482 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAACATGG
131 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* * * *
341547 ATTCTAGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
196 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
* *
341612 -AATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAA
261 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * ** *
341676 ATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGAAATGGTCTCCACTTTTTTCGAGATTGGG
326 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGG
* * * * * *
341741 AACCGAAAACACATTTCTTTCATTAGGATACGCAACATTGACCCTTTGATGTCGCAAAAAAAGCA
391 AACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCA
*
341806 TTTT-TTCCAACCGATTTTGAT
456 TTTTCTTCCAACCGTTTTTGAT
* * *
341827 -GAAATCAATGTTTGTCTCTTAAATAAGACAAATATGAGTAGTCGCACTAATCCTCATTCTTTTT
1 AG-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTT
* *
341891 TGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGGCTTCGTA
65 TGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTA
* * * *
341956 AGGAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAACAAG
130 AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
* * * * *
342021 GATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTATAAACATGTTCTTCTCATTAGGA
195 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGA
* *
342086 TATATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
260 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * ** *
342151 AATTTAATTCCTTAAATAAGGCAAGCATTGATTCTCGTAATGGTCACCACTCTTTTCGAGATTGG
325 AAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGG
* * *
342216 GAACCAAAAACATATTCCTTTCATTAGGATACACAACATTGAC-CATTTGATGTCGTAAGAAAAG
390 GAACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGC-TTTGATGTCGCAAGAAAAG
*
342280 CATTTT-TTCCAACCGATTTTGAT
454 CATTTTCTTCCAACCGTTTTTGAT
* * * *
342303 AGAATCAAAGTTTGGCCCTTAAATAAGACAAATATGAGTAGTCGCACTAATCCTCATTC-TTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * * * *
342367 GGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGATAGTTTGGTTTCGTAA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
* *
342432 GAAAGGCTTTCTTCCCACCAA-TTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAACAAGG
131 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* * * * *
342496 ATTCTGGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
196 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
* *
342561 -AATGATGTTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
261 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * ** * *
342625 ATTTAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAATGGTCTCCACTTTTTTTGAGATTGGG
326 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGG
* * * * * * * *
342690 AATCGATAACACATTCCATTCATTAGGATGCGCGGCATTGACCCTTTGATGTCGCAAGAAAAGCA
391 AACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCA
*
342755 TTTT-TTCCAACCGATTTTGAT
456 TTTTCTTCCAACCGTTTTTGAT
* * * *
342776 AGAATCAAAGTTTTTCTCTTAAATAAG-CAAACGTGAATAGTCATACTAATCCTCATTCTTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * * *
342840 GGATTAGCCACCATAAACTTAGTCTTTTCATCAGGATACACGATATTGATGCTTTGGTTTCGTAA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
* * * * * * * * **
342905 GAAA-GCTTCCTTCCCAGCAACTTTGGTAAAGTCTAAATTTGTGCCTCAAATGTGCCGAACATAC
131 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* * * * * * *
342969 ATTCCAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGAT
196 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
* * * * *
343034 AAGTGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAA
261 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * *
343099 AGTTCCTTCCTTAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTTGAGATTGGG
326 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGG
* * * * * *
343164 AACGAAAAACACATTCTTTTCATTAGGATACGCAACATTGATGCTTTGATGTCACAAGAAAAGCA
391 AACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCA
* *
343229 -TCTCTTCCAATCGTTTTTGAT
456 TTTTCTTCCAACCGTTTTTGAT
* * *
343250 AGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATGAGTAGTCACACTAATCCTCATTCGTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * * * **
343315 GGATTAGGCACCATAAACTTAGTGTTCACATAAGGATACACGATATTAACGGTTTGGTTTTATAA
66 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
* * * *
343380 GAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGTGACAGACATGG
131 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* * * * ** * *
343445 ATTGTAGTAATGATCGTCATTCACATTGTGCTTAGGCACTACGAACATATTCTCCTCATTAGGAT
196 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
* * * * * * * * *
343510 AAATCATGTTGATGATTTT-TTTTGCATGAAAATCTTTACTTTGCCCTATTTTTCATGACACCAA
261 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
343574 TA-TTC-TTCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACT-TTTTC-AGGAT
326 -AGTTCATTC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGA-GAT
* * * * * *
343635 TGGGAACCAAAAAGACATTCCTTTCATTAAGG-TATATGATATTGACGCTTT-AGTGTCACAAAA
387 TGGGAACCAAAAACACATTCCTTTCATT-AGGATACACGACATTGACGCTTTGA-TGTCGCAAGA
343698 AAAGCA-TTTCTAT-CAACCGTTTTTGAT
450 AAAGCATTTTCT-TCCAACCGTTTTTGAT
* * * * * *
343725 AGTACCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTTATACTAATCCTCATTCTTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* *
343790 GGATTAGGCACCATAAACTTAGTCTTTTCCATAAGGATACACGATATTGATGCTTTGGTTTCGTA
66 GGATTAGGCACCATAAACTTAGTCTTCT-CATAAGGATACACGATATTGATGGTTTGGTTTCGTA
* * * * *
343855 AG-AAGGATTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGCCGAACATG
130 AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
* * *
343919 CAATCTAGCAATGATCTTC
195 GATTCTAGTAATGATCTTC
343938 TTTTGCATGG
Statistics
Matches: 4762, Mismatches: 600, Indels: 135
0.87 0.11 0.02
Matches are distributed among these distances:
466 6 0.00
467 526 0.11
468 149 0.03
469 3 0.00
472 40 0.01
473 375 0.08
474 501 0.11
475 1160 0.24
476 1457 0.31
477 538 0.11
478 7 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (477 bp):
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAA
GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT
AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGG
AACCAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCA
TTTTCTTCCAACCGTTTTTGAT
Found at i:344292 original size:404 final size:407
Alignment explanation
Indices: 343578--344313 Score: 1028
Period size: 404 Copynumber: 1.8 Consensus size: 407
343568 CACCAATATT
* *
343578 CTTCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACTTTTTCAGGATTGGGAACC
1 CTTCACTTAAATAAGGCAAGCATAGATTCTCGTAACAGTCTTCCACTTTTTCAGGATTGGAAACC
* * * *
343643 AAAAAGACATTCCTTTCATTAAGGTATATGATATTGACGCTTTAGTGTCACAAAAAAAGCATTTC
66 AAAAAGACATTCCTTTCATTAAGGTATACGACATT-A-GCTTGAGTGTCACAAAAAAAGCATCTC
* * * *
343708 TATCAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTTATACT
129 TATCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAAAAAGACAAACATAAATAGTCACACT
*
343773 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTTTCCATAAGGATACACGATATT
194 AATCCTCATTCATTTTTGGATTAGGCACCATAAACTTAGTC-TTTCCATAAGGATACACGATATT
* * * * * *
343838 GATGCTTTGGTTTCGTAAGAAGGATTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTC
258 AAGGCTTTGGTTTCATAAGAAGGATTCCTTCCCACCAAATTTAGTAAAGTCTAAGTTCGGGCCTC
343903 AAATGTGCCGAACATGCAATCTAGCAATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTT
323 AAATGTGCCGAACATGCAATCTAGCAATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTT
343968 TTTCCTTAAAATCAAAGTTC
388 TTTCCTTAAAATCAAAGTTC
343988 CTTC-CTTAAATAAGGCAAGCATAGATTCTCGTAACAGT-TTCCACTCTTTTC-GAGATTGGAAA
1 CTTCACTTAAATAAGGCAAGCATAGATTCTCGTAACAGTCTTCCACT-TTTTCAG-GATTGGAAA
* *
344050 CGAAAAACG-CATTCCTTTCATT-AGG-ATACGCGACATT-G-TTGA-TGTCACAAGAAAAGCAT
64 CCAAAAA-GACATTCCTTTCATTAAGGTATA--CGACATTAGCTTGAGTGTCACAAAAAAAGCAT
* * * *
344109 CTCT-TCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCA
126 CTCTAT-CAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAAAAAGACAAACATAAATAGTCA
*
344173 CACTAATCCTCATTCATTTTTGGATTAGGCACCATAAACTTAGTC-TTCACATAGGGATACACGA
190 CACTAATCCTCATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTTC-CATAAGGATACACGA
* * *
344237 TATTAACGGC-TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCG
254 TATTAA-GGCTTTGGTTTCATAAG-AAGGATTCCTTCCCACCAAATTTAGTAAAGTCTAAGTTCG
*
344301 GGCCTCAATTGTG
317 GGCCTCAAATGTG
344314 ACAAACAAGG
Statistics
Matches: 289, Mismatches: 28, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
402 3 0.01
403 32 0.11
404 161 0.56
405 3 0.01
406 1 0.00
407 3 0.01
408 11 0.04
409 70 0.24
410 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (407 bp):
CTTCACTTAAATAAGGCAAGCATAGATTCTCGTAACAGTCTTCCACTTTTTCAGGATTGGAAACC
AAAAAGACATTCCTTTCATTAAGGTATACGACATTAGCTTGAGTGTCACAAAAAAAGCATCTCTA
TCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAAAAAGACAAACATAAATAGTCACACTAA
TCCTCATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTTCCATAAGGATACACGATATTAAG
GCTTTGGTTTCATAAGAAGGATTCCTTCCCACCAAATTTAGTAAAGTCTAAGTTCGGGCCTCAAA
TGTGCCGAACATGCAATCTAGCAATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTT
CCTTAAAATCAAAGTTC
Found at i:344752 original size:879 final size:882
Alignment explanation
Indices: 343045--344816 Score: 2668
Period size: 879 Copynumber: 2.0 Consensus size: 882
343035 AGTGATATGG
*
343045 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
* * *
343110 TAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTTGAGATTGGGAACGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
* *
343175 CATTCTTTTCATTAGGATACGCAACATTGATGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAT
131 CATTCCTTTCATTAGGATACGCAACATT-ATGC-TTGATGTCACAAGAAAAGCATCTCTTCCAAC
*
343240 CGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
194 CGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATCAGTAGTCACACTAATCCTC
* * *
343305 ATTCGTTTTTGGATTAGGCACCATAAACTTAGTGTTCACATAAGGATACACGATATTAACGGTTT
259 ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGCTT
* * * * *
343370 GGTTTTATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGTG
324 GGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAAATGTG
* * * * *
343435 ACAGACATGGATTGTAGTAATGATCGTCATTCACATTGTGCTTAGGCACTACGAACATATTCTCC
389 ACAAACAAGGATTCTAGTAATGATCGTCATTCACATTGTGATTAGGCACTACAAACATATTCTCC
*
343500 TCATTAGGATAAATCATGTTGATGATTTTTTTTGCATGAAAATCTTTACTTTGCCCTATTTTTCA
454 TCATTAGGATAAATCATGTTGATGATTTTTTTTGCATGAAAATCTTTACTTTGCCCTATTTTCCA
* * * * * *
343565 TGACACCAATATTCTTCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACTTTTTC
519 TAAAACAAATATTATTCACTTAAATAAAGCAAGCATTGATTCGCGTAACAGTCTTCCACTTTTTC
* * * * *
343630 AGGATTGGGAACCAAAAAGACATTCCTTTCATTAAGGTATATGATATTGACGCTTTAGTGTCACA
584 AGGATTGGGAACCAAAAACACAGTCCTTTCATTAAGGTATACGACATTGACCCTTTAGTGTCACA
* *
343695 AAAAAAGCATTTCTATCAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACAT
649 AAAAAAGCATTTCTATCAACCGATTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
343760 AAATAGTTATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTTTCCATAAG
714 AAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTTTCCATAAG
*
343825 GATACACGATATTGATGCTTTGGTTTCGTAAGAAGGATTCCTTCCCACCAATTTTGGTAAAGTCT
779 GATACACGATATTGATGCTTTGGTTTCGTAAGAAAGATTCCTTCCCACCAATTTTGGTAAAGTCT
343890 AAGTTCGTGCCTCAAATGTGCCGAACATGCAATCTAGCA
844 AAGTTCGTGCCTCAAATGTGCCGAACATGCAATCTAGCA
*
343929 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
*
343994 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACG
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
*
344059 CATTCCTTTCATTAGGATACGCGACA-T-TG-TTGATGTCACAAGAAAAGCATCTCTTCCAACCG
131 CATTCCTTTCATTAGGATACGCAACATTATGCTTGATGTCACAAGAAAAGCATCTCTTCCAACCG
* *
344121 TTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCACACTAATCCTCAT
196 TTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATCAGTAGTCACACTAATCCTCAT
*
344186 TCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAGGGATACACGATATTAACGGCTTGG
261 TCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGCTTGG
*
344251 TTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGTGAC
326 TTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAAATGTGAC
* * * ** ** * *
344316 AAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTTCTC
391 AAACAAGGATTCTAGTAATGATCGTCATTCACATTGTGATTAGGCACTACAAACATATTCTCCTC
* * * * *
344381 ATTAGGATATATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
456 ATTAGGATAAATCATGTTGATGATTTT-TTTTGCATGAAAATCTTTACTTTGCCCTATTTTCCAT
**
344446 AAAATCAAAT-TTAATTC-CTTAAATAAAGCAAGCATTGATTCGCGTAATGGTC-TCCACTTTTT
520 AAAA-CAAATATT-ATTCACTTAAATAAAGCAAGCATTGATTCGCGTAACAGTCTTCCAC-TTTT
*** *
344508 TC-GAGATTGGGAATTGATAACACAGTCCTTTCATT-AGG-ATACGCGACATTGACCCTTT-GAT
582 TCAG-GATTGGGAACCAAAAACACAGTCCTTTCATTAAGGTATA--CGACATTGACCCTTTAG-T
* * * * *
344569 GTCGCAAGAAAAGCATTT-TTTCCAACCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGA
643 GTCACAAAAAAAGCATTTCTAT-CAACCGATTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGA
* * **
344633 CAAACATGAATAGTCATACTAATCCTCCTTCTTTTTTGGATTAGGCACTGTAAACTTAGTCTTTT
707 CAAACATAAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTTT
* *
344698 -CATAAGGATACACGATATTGATGCTTTTGTTTCGTAAGAAAGATTGCTTCCCACCAATTTTGGT
772 CCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGATTCCTTCCCACCAATTTTGGT
* * *
344762 AAAGTCTAAGTTCTTGCCTCAAATGTGCCGAACATGCATTCTAGTA
837 AAAGTCTAAGTTCGTGCCTCAAATGTGCCGAACATGCAATCTAGCA
344808 ATGATCTTC
1 ATGATCTTC
344817 ATTCACGTTG
Statistics
Matches: 802, Mismatches: 77, Indels: 23
0.89 0.09 0.03
Matches are distributed among these distances:
878 3 0.00
879 415 0.52
880 226 0.28
881 9 0.01
883 1 0.00
884 148 0.18
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (882 bp):
ATGATCTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
CATTCCTTTCATTAGGATACGCAACATTATGCTTGATGTCACAAGAAAAGCATCTCTTCCAACCG
TTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATCAGTAGTCACACTAATCCTCAT
TCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGCTTGG
TTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAAATGTGAC
AAACAAGGATTCTAGTAATGATCGTCATTCACATTGTGATTAGGCACTACAAACATATTCTCCTC
ATTAGGATAAATCATGTTGATGATTTTTTTTGCATGAAAATCTTTACTTTGCCCTATTTTCCATA
AAACAAATATTATTCACTTAAATAAAGCAAGCATTGATTCGCGTAACAGTCTTCCACTTTTTCAG
GATTGGGAACCAAAAACACAGTCCTTTCATTAAGGTATACGACATTGACCCTTTAGTGTCACAAA
AAAAGCATTTCTATCAACCGATTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATAA
ATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTTTCCATAAGGA
TACACGATATTGATGCTTTGGTTTCGTAAGAAAGATTCCTTCCCACCAATTTTGGTAAAGTCTAA
GTTCGTGCCTCAAATGTGCCGAACATGCAATCTAGCA
Found at i:344986 original size:475 final size:476
Alignment explanation
Indices: 343929--350138 Score: 7927
Period size: 476 Copynumber: 13.1 Consensus size: 476
343919 CAATCTAGCA
* * * *
343929 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * *
343994 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATT-GGAAACGAAAAAC
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCG-AAAAC
* * * *
344058 GCATTCCTTTCATTAGGATACGCGACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAA
* * *
344118 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * * *
344183 CATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAGGGATACACGATATTAACGGCT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * ** *
344248 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * * *
344313 GACAAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
344378 CTCATTAGGATATATGATGTTG
455 CTCATTAGGATAAATGATATTG
* *
344400 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * ** * ** *
344465 TAAATAAAGCAAGCATTGATTCGCGTAATGGTCTCCACTTTTTTCGAGATTGGGAATTGATAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* *
344530 CAGTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAAC
* * * *
344595 CGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
* ** * *
344660 CTTCTTTTTTGGATTAGGCACTGTAAACTTAGTCTTTTCATAAGGATACACGATATTGATGCTTT
261 ATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
* * * * *
344725 TGTTTCGTAAGAAA-GATTGCTTCCCACCAATTTTGGTAAAGTCTAAGTTCTTGCCTCAAATGTG
326 GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
* * * * * * *
344789 CCGAACATGCATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCC
391 ACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCC
* * *
344854 TCCTTAGGATAAGTGATATGG
456 TCATTAGGATAAATGATATTG
* * * * *
344875 ATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCTCTTTTTTCCTTAAAGTCAAAGTTCTTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * * *
344940 TAAATAAGACAAGCATAGATTCTCGTAATAGTTTCCACTCTTTTCGAGATTGGGAA-CGAAAAAC
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCG-AAAAC
* * * *
345004 ATATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAA
345069 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-AATGACAAACATGAGTAGTCACACTAATCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GACAAACATGAGTAGTCACACTAATCC
* * * * *
345133 TCATTCATTTTTGGATTAGGCACCATAAACTTAGCCTTCACATAAGGATACACGATATTAACGGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* * * *
345198 TTGGTTTCATAAGAAAGGTTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTG
324 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* *
345263 TGACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
389 TGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* *
345328 TCTCATTAGGATAAAAGATATTG
454 CCTCATTAGGATAAATGATATTG
* * * * *
345351 ATGATTTTCTTTTGCATGGAAATCTTTTCTGTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * *
345416 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACCGAAAGCA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* * *
345481 CATTCCTTTCATTAGGGATACGCAACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
131 CATTCCTTTCATTA-GGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAA
* * * *
345546 CCGTTTTTGATAGAATCAAAGTTTATATCTTAAATAGGATAGAA-ATGAGTAGTCACACTAATCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCC
*
345610 TCATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* * *
345675 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTG
324 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * *
345740 TGACAAACATGGATTCTAGTAACTG-TCTTCATTCATTTTGTGATTAGGCACTACAAACGTATTC
389 TGACAAACATGGATTCTAGTAA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTC
* *
345804 TTCTCATTAGAATAAATGATATTG
453 TCCTCATTAGGATAAATGATATTG
* * * **
345828 ATGGTATTCTTTTGCATGG--A------C-TTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATTCC
* *
345883 TTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACTGAAAAC
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAAC
* * * * * * *
345948 ACATTCCTTTCGTTAGGATACGCTACATTGATGCTATGATGGCACAGGAAAAGC-TTTTCTTCCA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTT-TTCCA
* *
346012 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCC
*
346077 TCATTCTTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* *
346142 TTGGTTTCATAAGCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
324 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * * *
346207 TGGCAAACATGGATTGTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAAAGTCT
389 TGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* *
346272 CCTCATCAGTATAAATGATATTG
454 CCTCATTAGGATAAATGATATTG
* *
346295 ATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCATCCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * * * * *
346359 TAAATAAGCCAAGCATTGATTCTTGTAACAGTCTCCACTCTCTTCAACATTGGGAACCAAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* *** * * * * *
346424 CATTTCTTTCATTAGGATATATGACATGGACGCTTTGGTGTCGTAAAAAAAGCATTTTCTTTCAA
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTT-TTCCAA
* * * *
346489 CCGTTTTTGATAGAATCAAAGTTTATCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * * *
346554 CATTCTTTTTAGGATTATGCACCATAAACTTAGACTTC-CAAAAAGGATACACGATATTGAAGCT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTC-ATAAGGATACACGATATTGATGGT
* * * *
346618 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAACGTCTATGTCCGTGCCTCAAATG
324 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * * * **
346683 TGACAAACATGGATTGTAGTAATGATCTTCATTCACGTTGTGATTGGGAACTACGAACATATTCT
389 TGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* *
346748 CCTCATTATGATACATGATATTG
454 CCTCATTAGGATAAATGATATTG
* * * * * * *
346771 AAGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCATGACATC-AA-TATCCTTCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATT-C
* * * * *
346834 CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCTCTCTTTTCAAGATTAGGAACCAAAAA
64 CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAA
* * *** * * * * *
346899 CATAGTT-CTTTCATTAAGATATATGACACTGACGCTCTGGTGTCGCAAAAAAAGCATTTCTAT-
129 CACA-TTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTT-TTTC
* * * * * *
346962 CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATATGACAAACAAGAATAGTCATACTAAT
192 CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAAT
* * *
347027 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCCTCTCATAATGATATACGATATTGATG
257 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG
* * * *
347092 CG-TTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAA
322 -GTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAA
** * * ** * ** *
347156 ACGTGACAAACATGGACTCTAGTAATGATCATCATTCACAATGTGATAAGGCAGAATAAACTTAT
386 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATAT
* * *
347221 TCT-CTTATTAGGATAAATAATATGG
451 TCTCCTCATTAGGATAAATGATATTG
* *
347246 ATGATTTTCTTCTGCATGGAAATCTTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTC
1 ATGATTTTCTTTTGCATGGAAATC--TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTC
* * * * * *
347311 CTTAAATAAGGCAAACATTGACTCTCATACCAGTCTCCACTTTTTTCGAGATTGGGAACCAAAAA
64 CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAA
* ** * * *
347376 TACATT-CTTTTTTTAGGATACGTGACATTGACGATTTGATGTCTCAAGAAAAGC-TTTTCTTCC
129 CACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTT-TTCC
* ** * *
347439 AACCATTTTCAATAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAGTAGTCACACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATC
* * * *
347504 CTCATTCTTTTTTGGATTAGGCACCATAAAATTAGTCATCTCATAAGGATACAAGATATTAATGG
258 CTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGG
* * * * * * *
347569 TTTGGTTTTGTAAGAAA-GCTTCCTTCCAACCAATTTTGGTAAAGTCTATGGTCATGCCTCAACT
323 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATT
* * * * ** ** * *
347633 GTGCCAAATATGGATTCTAATAATGATCTTTATTCACGCTGTGATTCTGCAATATAAACTTATTC
388 GTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTC
* *
347698 TCCTCCTTAGGATAAATGATATGG
453 TCCTCATTAGGATAAATGATATTG
* *
347722 ATGATTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * ** *
347787 TAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTAAGAACCAAAAAAC
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACC-GAAAAC
** * * *
347852 ACATTCCTTTTTTTAGGATACGCGACATTGACGCTCTGATGTCACAAGAAAAGCATTTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAA
*
347917 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTACATAAGACAAACATGAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * *
347982 CATTCTTTTTGGGGTTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* *
348047 TAGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * *
348112 GACAAACATGGATTCTAGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
348177 CTCATTAGGAT-GATGATGTTG
455 CTCATTAGGATAAATGATATTG
* * *
348198 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * ** * *
348263 TAAATAAAGCAAGCATTGATTCTCGAAATGGTCTCCACTTTTTTCGAGATTGGGAATCGAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* * * *
348328 CATTTCTTTCATTAGGATACGCAACATTGACCCTTTGATGTCGCAAAAAAAGCATTTTTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAAC
** * * **
348393 CAATTTTGAT-GAAATCAATGTTTGTCTCTTAAATAAGACAAATATGAGTAGTTGCACTAATCCT
196 CGTTTTTGATAG-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
*
348457 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * * * *
348522 TGGCTTCGTAAGGAAGGCTTTCTTCCCTCCAATTTTGTTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * *
348587 GACAAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
348652 CTCATTAGGATATATGATGTTG
455 CTCATTAGGATAAATGATATTG
* *
348674 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
** * * *
348739 TAAATAAGGCAAGCATTGATTCTCGTAATGGTCACCACTCTTTTTGAGATTGGGAACCAAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* * * *
348804 TATTCCTTTCATTAGGATACACAACATTGAC-CATTTGATGTCGTAAGAAAAGCATTTTTTCCAA
131 CATTCCTTTCATTAGGATACGCGACATTGACGC-TTTGATGTCGCAAGAAAAGCATTTTTTCCAA
* * * * *
348868 CCGATTTTGATAGAATCAAAGTTTGGCCCTTAAATAAGACAAATATGAGTAGTCGCACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * * *
348933 CTTTCTTTTTTGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGATAGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
*
348998 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * * * *
349063 GACAAACAAGGATTCTGGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
*
349128 CTCATTAGGAT-AATGATGTTG
455 CTCATTAGGATAAATGATATTG
* *
349149 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * ** * * * *
349214 TAAATAAGGCAAGCATTGATTCTTGCAATGGTCTCCACTTTTTTTGAGATTGGGAATCGATAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* *
349279 CATTCCATTCATTAGGATGCGCG-CATTGAC-CTTTTGATGTCGCAAGAAAAGCATTTTTTCCAA
131 CATTCCTTTCATTAGGATACGCGACATTGACGC-TTTGATGTCGCAAGAAAAGCATTTTTTCCAA
* * * * *
349342 CCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAG-CAAACGTGAATAGTCATACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * *
349406 CATTCTTTTTTGGATTAGCCACCATAAACTTAGTCTTTTCATCAGGATATACGATATTGATGCTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * * * * * *
349471 TGGTTTCGTAAGAAA-GCTTCCTTCCCAGCAACTTTGGTAATGTCTAAATTTGTGCCTCAAATGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * ** * * * * *
349535 GCCGAACATACATTCCAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTC
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
349600 CTCCTTAGGATAAGTGATA-TG
455 CTCATTAGGATAAATGATATTG
* * * *
349621 CATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCC
1 -ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC
* * * *
349686 TTAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTTGAGATTGGGAA-CGAAAAA
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCG-AAAA
* * * * * *
349750 CACATTCTTTTCATTAGGATACGCAACATTGATGCTTTGATGTCACAAGAAAAGCATCTCTTCCA
129 CACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCA
* * *
349815 ATCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATGAGTAGTCACACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCC
* * * * *
349880 TCATTCGTTTTTGGATTAGGCACCATAAACTTAGTGTTCACATAAGGATACACGATATTAACGGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* * * *
349945 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATG
324 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * * * * **
350010 TGACAGACATGGATTGTAGTAATGATCGTCATTCACATTGTGCTTAGGCACTACGAACATATTCT
389 TGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* *
350075 CCTCATTAGGATAAATCATGTTG
454 CCTCATTAGGATAAATGATATTG
* *
350098 ATGATTTT-TTTTGCATGAAAATCTTTACTTTGCCCTATTTT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
350139 TCATGACACC
Statistics
Matches: 5012, Mismatches: 667, Indels: 116
0.86 0.12 0.02
Matches are distributed among these distances:
466 7 0.00
467 313 0.06
468 93 0.02
469 2 0.00
471 134 0.03
472 109 0.02
473 228 0.05
474 235 0.05
475 1244 0.25
476 2007 0.40
477 625 0.12
478 14 0.00
479 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
ATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
ACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCC
TCATTAGGATAAATGATATTG
Found at i:345260 original size:951 final size:949
Alignment explanation
Indices: 343929--350138 Score: 8122
Period size: 951 Copynumber: 6.5 Consensus size: 949
343919 CAATCTAGCA
* * * *
343929 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTTCCT
* * *
343994 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACG
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACA
*
344059 CATTCCTTTCATTAGGATACGCGACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAAC
* *
344119 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCACACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
* * * * *
344184 ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAGGGATACACGATATTAACGGCTT
261 ATTC-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
* ** *
344249 GGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGTG
325 GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
* * * * *
344314 ACAAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTTC
390 ACAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTC
*
344379 TCATTAGGATATATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
455 TCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* **
344444 TTAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCGCGTAATGGTCTCCACTTTTTT
520 TTAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGTAACAGTCTCCACTTTTTT
** * *
344509 CGAGATTGGGAATTGATAACACAGTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTCGC
585 CGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTCGC
*
344574 AAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACA
650 AAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
* * ** *
344639 TGAATAGTCATACTAATCCTCCTTCTTTTTTGGATTAGGCACTGTAAACTTAGTCTTTTCATAAG
715 TGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG
* * *
344704 GATACACGATATTGATGCTTTTGTTTCGTAAGAAAGATTGCTTCCCACCAATTTTGGTAAAGTCT
780 GATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT
* * * *
344769 AAGTTCTTGCCTCAAATGTGCCGAACATGCATTCTAGTAATGATCTTCATTCACGTTGTGATTAG
845 AAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAG
* * *
344834 GTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGG
910 GCACTATAAACTTATTCTCCTCATTAGGATAA-TGATATGG
* * * *
344875 ATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCTCTTTTTTCCTTAAAGTCAAAGTTCTTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTTCCT
* * *
344940 TAAATAAGACAAGCATAGATTCTCGTAATAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACA
* *
345005 TATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAAC
*
345070 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAATGACAAACATGAGTAGTCACACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
* * * *
345135 ATTCATTTTTGGATTAGGCACCATAAACTTAGCCTTCACATAAGGATACACGATATTAACGGTTT
261 ATTC-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
* * *
345200 GGTTTCATAAGAAAGGTTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTG
325 GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
*
345265 ACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTC
390 ACAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTC
* * * * * *
345330 TCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTGTACTCTTTTTTCC
455 TCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* ** * * * *
345395 TTAAAATCAAAGTTCCTTCCTTAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTT
520 TTAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGTAACAGTCTCCACTTTTTT
* *
345460 CGAGATTGGGAACCGAAAGCACATTCCTTTCATTAGGGATACGCAACATTGACCCTTTGATGTCG
585 CGAGATTGGGAACCGAAAACACATTCCTTTCATTA-GGATACGCGACATTGACCCTTTGATGTCG
* * * * *
345525 CAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTATATCTTAAATAGGATAGAA
649 CAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACA-AA
* *
345590 -ATGAGTAGTCACACTAATCCTCATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATA
713 CATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATA
* * *
345654 AGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAC
778 AGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA-GCTTTCTTCCCACCAATTTTGGTAAAG
* * **
345719 TCTAAGTTCGTACCTCAATTGTGACAAACATGGATTCTAGTAACTG-TCTTCATTCATTTTGTGA
842 TCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAA-TGATCTTCATTCACGTTGTGA
* * * * *
345783 TTAGGCACTACAAACGTATTCTTCTCATTAGAATAAATGATATTG
906 TTAGGCACTATAAACTTATTCTCCTCATTAGGAT-AATGATATGG
* * * ***
345828 ATGGTATTCTTTTGCATGG--A------C-TTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCTTTCC
* *
345883 TTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACTG-AAAA
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAAC-GAAAAA
* * * * * * *
345947 CACATTCCTTTCGTTAGGATACGCTACATTGATGCTATGATGGCACAGGAAAAGCTTTTCTTCCA
129 CACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCA
*
346012 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCC
346077 TCATTCTTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
259 TCATTCTTTT-TGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
*
346142 TTGGTTTCATAAGCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
323 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * * * *
346207 TGGCAAACATGGATTGTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAAAGTCT
388 TGACAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* * * * *
346272 CCTCATCAGTATAAATGATATTGATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
453 TCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * * *
346337 CCTTAAAATCAAA-TTCATCCCTTAAAT-AAGCCAAGCATTGATTCTTGTAACAGTCTCCACTCT
518 CCTTAAAATCAAATTTAATTCCTTAAATAAAG-CAAGCATTGATTCTCGTAACAGTCTCCACTTT
* * * * * *** * * *
346400 CTTCAACATTGGGAACCAAAAACACATTTCTTTCATTAGGATATATGACATGGACGCTTTGGTGT
582 TTTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGT
* * * * *
346465 CGTAAAAAAAGCATTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTAAAATAAGACA
647 CGCAAGAAAAGCATTTT-TTCCAACCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACA
* * * *
346530 AACATGAATAGTCATACTAATCCTCATTCTTTTTAGGATTATGCACCATAAACTTAGACTTC-CA
711 AACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTC-
* *
346594 AAAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTA
775 ATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA-GCTTTCTTCCCACCAATTTTGGTA
* * * *
346659 ACGTCTATGTCCGTGCCTCAAATGTGACAAACATGGATTGTAGTAATGATCTTCATTCACGTTGT
839 AAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGT
* * ** * * *
346724 GATTGGGAACTACGAACATATTCTCCTCATTATGATACATGATATTG
904 GATTAGGCACTATAAACTTATTCTCCTCATTAGGATA-ATGATATGG
* * * * * * * *
346771 AAGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCATGACATCAATA-TCCTTCCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTTCTTTCC
* * * *
346835 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTT-CTCTCTTTTCAAGATTAGGAACCAAAAA
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGT-TTCCACTCTTTTCGAGATTGGGAACGAAAAA
* * *** * * * * *
346899 CATAGTT-CTTTCATTAAGATATATGACACTGACGCTCTGGTGTCGCAAAAAAAGCATTTCTAT-
129 CACA-TTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCT-TC
* * * * * * *
346962 CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATATGACAAACAAGAATAGTCATACTAAT
192 CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAAT
* * *
347027 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCCTCTCATAATGATATACGATATTGATG
257 CCTCATTC-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG
** * * *
347092 CG-TTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAA
321 -GTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAA
** * * * ** * ** *
347156 ACGTGACAAACATGGACTCTAGTAATGATCATCATTCACAATGTGATAAGGCAGAATAAACTTAT
385 TTGTGACAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATAT
* * * * * *
347221 TC-TCTTATTAGGATAAATAATATGGATGATTTTCTTCTGCATGGAAATCTTTTTTTTTTGCCCT
450 TCTTCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATC--TTTTCTTTGCCCT
* * * * * * *
347285 ATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAACATTGACTCTCATACCAGTCTCCA
513 ATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGTAACAGTCTCCA
* * ** * **
347350 CTTTTTTCGAGATTGGGAACCAAAAATACATT-CTTTTTTTAGGATACGTGACATTGACGATTTG
578 CTTTTTTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTG
* *
347414 ATGTCTCAAGAAAAGC-TTTTCTTCCAACC-ATTTTCAATAGAATCAAAGTTTATCTCTTAAATA
643 ATGTCGCAAGAAAAGCATTTT-TTCCAACCGATTTT-GATAGAATCAAAGTTTATCTCTTAAATA
* * * *
347477 ACACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAAATTAGTCA
706 AGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCT
* * * * * *
347542 TCTCATAAGGATACAAGATATTAATGGTTTGGTTTTGTAAGAAAGCTTCCTTCCAACCAATTTTG
771 TCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTG
* * * * * * * * *
347607 GTAAAGTCTATGGTCATGCCTCAACTGTGCCAAATATGGATTCTAATAATGATCTTTATTCACGC
836 GTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGT
** * *
347672 TGTGATTCTGCAATATAAACTTATTCTCCTCCTTAGGATAAATGATATGG
901 TGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGAT-AATGATATGG
*
347722 ATGATTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT-TATTCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCT-TTCC
* * * ** *
347786 TTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTAAGAACCAAAAAA
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAA-CGAAAAA
** *
347851 CACATTCCTTTTTTTAGGATACGCGACATTGACGCTCTGATGTCACAAGAAAAGCATTTCTTCCA
129 CACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCA
* *
347916 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTACATAAGACAAACATGAGTAGTCACACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCC
* *
347981 TCATTCTTTTTGGGGTTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGT
259 TCATTCTTTTT-GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* * *
348046 TTAGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTG
323 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * * *
348111 TGACAAACATGGATTCTAGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCT
388 TGACAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
*
348176 TCTCATTAGGAT-GATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
453 TCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * **
348240 CCTCAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGAAATGGTCTCCACTTTT
518 CCTTAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGTAACAGTCTCCACTTTT
* * *
348305 TTCGAGATTGGGAATCGAAAACACATTTCTTTCATTAGGATACGCAACATTGACCCTTTGATGTC
583 TTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTC
* * * *
348370 GCAAAAAAAGCATTTTTTCCAACCAATTTTGAT-GAAATCAATGTTTGTCTCTTAAATAAGACAA
648 GCAAGAAAAGCATTTTTTCCAACCGATTTTGATAG-AATCAAAGTTTATCTCTTAAATAAGACAA
* * **
348434 ATATGAGTAGTTGCACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT
712 ACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT
* * * * * *
348499 AAGGATGCACGATATTGATGGTTTGGCTTCGTAAGGAAGGCTTTCTTCCCTCCAATTTTGTTAAA
777 AAGGATACACGATATTGATGCTTTGGTTTCGTAA-GAAAGCTTTCTTCCCACCAATTTTGGTAAA
* * * * * **
348564 GTCTAAGTTCGGGCCTCAATTGTGACAAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGA
841 GTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGA
* * * *
348629 TTAGGCACTATAAACATATTCTTCTCATTAGGATATATGATGTTG
906 TTAGGCACTATAAACTTATTCTCCTCATTAGGATA-ATGATATGG
* **
348674 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTTCCT
** ** * *
348739 TAAATAAGGCAAGCATTGATTCTCGTAATGGTCACCACTCTTTTTGAGATTGGGAACCAAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACA
* * * ** *
348804 TATTCCTTTCATTAGGATACACAACATTGAC-CATTTGATGTCGTAAGAAAAGCATTTTTTCCAA
131 CATTCCTTTCATTAGGATACGCGACATTGACGC-TTTGATGTCACAAGAAAAGCATTTCTTCCAA
* * * * * *
348868 CCGATTTTGATAGAATCAAAGTTTGGCCCTTAAATAAGACAAATATGAGTAGTCGCACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCT
* * * * * *
348933 CTTTCTTTTTTGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGATAGTT
260 CATTC-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* *
348998 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGT
324 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * *
349063 GACAAACAAGGATTCTGGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTT
389 GACAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTT
349128 CTCATTAGGAT-AATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
454 CTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * **
349192 CTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGATTCTTGCAATGGTCTCCACTTTTT
519 CTTAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGTAACAGTCTCCACTTTTT
* * * * * *
349257 TTGAGATTGGGAATCGATAACACATTCCATTCATTAGGATGCGCG-CATTGACCTTTTGATGTCG
584 TCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTCG
*
349321 CAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAG-CAAAC
649 CAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAAC
* * * * *
349385 GTGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGCCACCATAAACTTAGTCTTTTCATCA
714 ATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAA
* * * * *
349450 GGATATACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTCCTTCCCAGCAACTTTGGTAATGTC
779 GGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTC
* * * * ** *
349515 TAAATTTGTGCCTCAAATGTGCCGAACATACATTCCAGTAATGATCTTCATTCACGTTGTGATTA
844 TAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTA
* * * *
349580 GGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGC
909 GGCACTATAAACTTATTCTCCTCATTAGGATAA-TGATATGG
* * * *
349622 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTTCCT
* * *
349687 TAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTTGAGATTGGGAACGAAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACA
* * * * *
349752 CATTCTTTTCATTAGGATACGCAACATTGATGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAT
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAAC
*
349817 CGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
* * * *
349882 ATTCGTTTTTGGATTAGGCACCATAAACTTAGTGTTCACATAAGGATACACGATATTAACGGTTT
261 ATTC-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
* * *
349947 GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGTG
325 GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
* * * * * * ** *
350012 ACAGACATGGATTGTAGTAATGATCGTCATTCACATTGTGCTTAGGCACTACGAACATATTCTCC
390 ACAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTC
* * *
350077 TCATTAGGATAAATCATGTTGATGATTTT-TTTTGCATGAAAATCTTTACTTTGCCCTATTTT
455 TCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
350139 TCATGACACC
Statistics
Matches: 4590, Mismatches: 609, Indels: 128
0.86 0.11 0.02
Matches are distributed among these distances:
942 42 0.01
943 343 0.07
944 442 0.10
945 2 0.00
946 149 0.03
947 1 0.00
948 543 0.12
949 108 0.02
950 171 0.04
951 1312 0.29
952 1186 0.26
953 222 0.05
954 67 0.01
955 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (949 bp):
ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTTCCT
TAAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACA
CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
ATTCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTG
GTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGA
CAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCT
CATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGTAACAGTCTCCACTTTTTTC
GAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTCGCA
AGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAT
GAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG
ATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTA
AGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGG
CACTATAAACTTATTCTCCTCATTAGGATAATGATATGG
Found at i:348158 original size:158 final size:157
Alignment explanation
Indices: 347981--349155 Score: 467
Period size: 158 Copynumber: 7.4 Consensus size: 157
347971 ACACTAATCC
* * * * *
347981 TCATTCTTTTTGGGGTTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATGCACGATATTGATGAT
* * * *
348046 TTAGTTTCGTAAGAAAGGC-TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATT
65 TT-GTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTAAAT
**
348110 GTGACAAACATGGATTCTAGTAGTGGTAT
129 AAGACAAACATGGATTCTAGTAGTGGTAT
* * * *
348139 TCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATG-ATGATGTTGATGAT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATGCACGATATTGATGA-
* * * * * * ** * ** * * ****
348203 TTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTCAAAATCAAATTTAATTCCTTAA
64 TTTGTTTCGTA-AGAAAGGCATTTCTTCCCACCAATTTTGAT-AAAGTCAAAGTTCGGGCCTTAA
* * * * * *
348266 ATAA-AGCAAGCATTGATTCTCGAAATGGTCT
127 ATAAGA-CAAACATGGATTCTAGTAGTGGTAT
* * * * * ** * * * * *
348297 CCACTT-TTTTCGAGATTGGGAATCGA-AAACACATTTCTT-TCATTAGGATACGCAACATTGAC
1 TCA-TTCTTTT-GTGATTAGGCA-CCATAAACTTA-TTCTTCTCATTAGGATGCACGATATTGAT
** * * * * * * * * *
348359 CCTTTGATGTCGCAAAAAAAGCATTTTTTCCAACCAATTTTGATGAAA-TCAATGTT-TGTCTCT
62 GATTTG-TTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGAT-AAAGTCAAAGTTCGGGC-CT
* * * **
348422 TAAATAAGACAAATATGAGTAGTTGC-ACTAATCCTCAT
124 TAAATAAGACAAACATG-G-A-TT-CTAGTAGTGGT-AT
* * *
348460 TC-TT-TTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTT
1 TCATTCTTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATGCACGATATTGATGATT
* * * * * * * *
348522 TGGCTTCGTAAGGAAGGC-TTTCTTCCCTCCAATTTTGTTAAAGTCTAAGTTCGGGCCTCAATTG
66 T-GTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTAAATA
* * *
348586 TGACAAACAAGGATTCTAGTAGTGGTCT
130 AGACAAACATGGATTCTAGTAGTGGTAT
* * ** * *
348614 TCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATATATGATGTTGATGAT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATGCACGATATTGATGA-
* * * * * * ** * ** * * ****
348679 TTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAATTTAATTCCTTAA
64 TTTGTTTCGTA-AGAAAGGCATTTCTTCCCACCAATTTT-GATAAAGTCAAAGTTCGGGCCTTAA
* * * * *
348742 ATAAGGCAAGCATTGATTCTCGTAATGGTCA-
127 ATAAGACAAACATGGATTCTAGTAGTGGT-AT
* * * * * * * * * * **
348773 CCACTCTTTTTGAGATTGGGAACCAAAAACATATTCCTT-TCATTAGGATACACAACATTGACCA
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATT-CTTCTCATTAGGATGCACGATATTGATGA
* * * * * * *
348837 TTTGATGTCGTAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAA-TCAAAGTTTGGCCCTTAA
64 TTTG-TTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATA-AAGTCAAAGTTCGGGCCTTAA
* * * ***
348901 ATAAGACAAATAT-GA--GTAGTCGCACTAAT
127 ATAAGACAAACATGGATTCTAGTAGTGGT-AT
* * * * * * *
348930 CCTCTTTCTTTTTTGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGAT-
1 --TCATTCTTTTGT-GATTAGGCACCATAAACTTATTCTTCTCATTAGGATGCACGATATTGATG
* * *
348994 AGTTTGGTTTCGTAAGAAAGGC-TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCA
63 A-TTT-GTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTA
* ** * *
349058 ATTGTGACAAACAAGGATTCTGGTAGTGGTAT
126 AATAAGACAAACATGGATTCTAGTAGTGGTAT
* * * * *
349090 TCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT-AATGATGTTGATGAT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATGCACGATATTGATGAT
349154 TT
65 TT
349156 TCTTTTGCAT
Statistics
Matches: 713, Mismatches: 251, Indels: 107
0.67 0.23 0.10
Matches are distributed among these distances:
154 4 0.01
155 9 0.01
156 6 0.01
157 52 0.07
158 314 0.44
159 277 0.39
160 30 0.04
161 12 0.02
162 6 0.01
163 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (157 bp):
TCATTCTTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATGCACGATATTGATGATT
TGTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTAAATAA
GACAAACATGGATTCTAGTAGTGGTAT
Found at i:351830 original size:42 final size:42
Alignment explanation
Indices: 351769--351887 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
351759 TAGCCCTCAA
* * *
351769 AGAGAAAGAAGAGAGAGGAGGGATGATGGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
351811 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
351853 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
351888 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:358280 original size:475 final size:476
Alignment explanation
Indices: 357223--363807 Score: 8358
Period size: 476 Copynumber: 13.9 Consensus size: 476
357213 CATTCTAGCA
* * * *
357223 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * * *
357288 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGA-TCGGAAACGAAAAAC
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCG-AAAAC
* *
357352 ACATTCCTTTCATTAGGATACGCGACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
* * *
357412 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * * *
357477 CATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAGGGATACACGATATTAACGGCT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * ** *
357542 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * * *
357607 GACAAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
357672 CTCATTAGGATATATGATGTTG
455 CTCATTAGGATAAATGATATTG
* * *
357694 ATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
** * ** *
357759 TAAATAAGGCAAGCATTGATT-TGCGTAATGGTCTCCACTTTTTTCGAGATTGGGAATTGATAAC
66 TAAATAAGGCAAGCATTGATTCT-CGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAAC
* * * * *
357823 ACAGTCCTTTCATTAGGATACGCGACATTAACCCTTTGATGTCGCAAGAAAAGCTTTTTTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
* * * * *
357888 CCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAATATGAATAGTCATACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
** * *
357953 CATTCTTTTTTGGATTAGGCACTGTAAACTTAGTCTTTTCATAAGGATACACGATATTGATGCTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * * * *
358018 TTGTTTCGTAAGAAA-GATTGCTTCCCACCAATTTTGGTAAAGTCTAAGTTCTTGCCTCAAATGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * * *
358082 GCCGAACATGCATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTC
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* * *
358147 CTCCTTAGGATAAGTGATATGG
455 CTCATTAGGATAAATGATATTG
* * * * *
358169 ATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCTCTTTTTTCCTTAAAGTCAAAGTTCTTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * * *
358234 TAAATAAGACAAGCATAGATTCTCGTAATAGTTTCCACTCTTTTCGAGATTGGGAA-CGAAAAAC
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCG-AAAAC
* * *
358298 ATATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
358363 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-AATGACAAACATGAGTAGTCACACTAATCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GACAAACATGAGTAGTCACACTAATCC
* * * * *
358427 TCATTCATTTTTGGATTAGGCACCATAAACTTAGCCTTCACATAAGGATACACGATATTAACGGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* * * *
358492 TTGGTTTCATAAGAAAGGTTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTG
324 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * *
358557 TGACAAAAATGGATTCTAGTAATGGTCCTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
389 TGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
*
358622 TCTCATTAGGATAAATGATATTG
454 CCTCATTAGGATAAATGATATTG
* * * *
358645 ATGATTTTCTTTTGCATGGAAATCTTTT-TTGTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATTCC
* * *
358709 TTAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACCGAAAGC
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAAC
* *
358774 ACATTCCTTTCATTAGGGATACGCAACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCA
130 ACATTCCTTTCATTA-GGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCA
* * * *
358839 ACCGTTTTTGATAGAATCAAAGTTTATATCTTAAATAGGATAGAA-ATGAGTAGTCACACTAATC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATC
*
358903 CTCATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGG
258 CTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGG
* * *
358968 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATT
323 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATT
* * *
359033 GTGACAAACATGGATTCTAGTAACTG-TCTTCATTCATTTTGTGATTAGGCACTACAAACGTATT
388 GTGACAAACATGGATTCTAGTAA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATT
* *
359097 CTTCTCATTAGAATAAATGATATTG
452 CTCCTCATTAGGATAAATGATATTG
* * * **
359122 ATGGTATTCTTTTGCATGG--A------C-TTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATTCC
* *
359177 TTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACTGAAAAC
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAAC
* * * * * * *
359242 ACATTCCTTTCGTTAGGATACGCTACATTGATGCTATGATGGCGCAGGAAAAGCTTTTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
* *
359307 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
*
359372 CATTCTTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* *
359437 TGGTTTCATAAGCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * *
359502 GGCAAACATGGATTGTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAAAGTCTC
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
359567 CTCATCAGTATAAATGATATTG
455 CTCATTAGGATAAATGATATTG
*
359589 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCATCCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * * * * * *
359653 TAAATAAGCCAAGCATTGATTCTTGTAACACTCTCCACTCTCTTCAACATTGGGAACCAAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
*** * * * * * *
359718 CATTCCTTTCATTAGGATATATGACATTGATGCTTCGGTGTCGTAAAAAAAGCATTTTCTTTCAA
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCA-TTTCTTCCAA
* * * *
359783 CCGTTTTTGATAGAATCAAAGTTTATCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * * *
359848 CATTCTTTTTAGGATTATGCACCATAAACTTAGACTTCTAATAAGGATACACGATATTGAAGCTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * * *
359913 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAATGTCTATGTCCGTGCCTCAAATGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * **
359978 GACAAACATGGATTGTAGTAATGATCTTCATTCACGTTGTGATTGGGAACTACGAACATATTCTC
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
360043 CTCATTATGATACATGATATTG
455 CTCATTAGGATAAATGATATTG
* ** * * * * *
360065 AAGATTTTCTTTTGTGTGAAAATCTTTTCTTTGCCCTATTTTCCATGACATC-AA-TATCCTTCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATT-C
* * * * *
360128 CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCTCTCTTTTCAAGATTAGGAACCAAAAA
64 CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAA
* * *** * * * *
360193 CATAGTT-CTTTCATTAAGATATATGACACTGACGCTCTGGTGTCGCAAAAAAAGCATTTCTAT-
129 CACA-TTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TC
* * * * *
360256 CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAAT
192 CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAAT
* * *
360321 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCCTCTCATAATGATATACGATATTGATG
257 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG
* * * *
360386 CG-TTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAA
322 -GTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAA
** * * ** * ** *
360450 ACGTGACAAACATGGACTCTAGTAATGATCATCATTCACAATGTGATAAGGCAGAATAAACTTAT
386 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATAT
* * *
360515 TCT-CTTATTAGGATAAATAATATGG
451 TCTCCTCATTAGGATAAATGATATTG
* * *
360540 ATGATTTTCTTCTGCATGGAAATCTTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTCATTCC
1 ATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC
* * * * * * *
360605 TTAAATAAGGCAAACATTGACTCTCATACCAGTCTCCACTTTTTTCGAGATTGGGAACCAAAAAT
65 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAAC
** * * * *
360670 ACATT-CTTTTTTTAGGATACGTGACATTGACGATTTGATGTCTCAAGAAAAGCTTTTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
* * * * * *
360734 CCGTTTTCGATAGAAGCAAAGTTTATCTCTTGAATAACACAAACATGAGTAGTCACAATAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * *
360799 CATTCTTTTTTGGATTAGGCACCATAAAATTAGTCATCTCATAAGGATACAAGATATTAATGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * * * * * *
360864 TGGTTTTGTAAGAAA-GCTTCCTTCCAACCAATTTTGGTAAAGTCTATGGTCATGCCTCAACTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * ** ** * *
360928 GCCAAATATGGATTCTAATAATGATCTTTATTCACGCTGTGATTCTGCAATATAAACTTATTCTC
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* * *
360993 CTCCTTAGGATAAAAGATATGG
455 CTCATTAGGATAAATGATATTG
* * *
361015 ATGATTTTCTTTTGCATCGTAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * * * *
361080 TAAATAAGGCAAGCATTAATTCTCATAACAATCTCCACTCTTTTCGAGATTGAGAACCAAAAAAC
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACC-GAAAAC
** * *
361145 ACATTCCTTTTTTTAGGATACGCGACATTGACGCTCTGATGTCACAAGAAAAGCATTTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
*
361210 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTACATAAGACAAACATGAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * *
361275 CATTCTTTTTGGGGTTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* *
361340 TAGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * *
361405 GACAAACATGGATTCTAGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
*
361470 CTCATTAGGAT-AATGATGTTG
455 CTCATTAGGATAAATGATATTG
* * *
361491 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * ** *
361556 TAAATAAAGCAAGCATTGATTCTCGAAATGGTCTCCACTTTTTTCGAGATTGGGAACCGAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* * * * *
361621 CATTTCTTTCATTAGGATACGCAACATTGACCCTTTGATGTCGCAAAAAAAGCATTTTTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAAC
* * *
361686 CGATTTTGAT-GAAATCAATGTTTGTCTCTTAAATAAGACAAATATGAGTAGTCACACTAATCCT
196 CGTTTTTGATAG-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
*
361750 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * * * *
361815 TGGCTTCGTAAGGAAGGCTTTCTTCCCTCCAATTTTGTTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * *
361880 GACAAACAAGGATTCTAGTAGTGGTCGTCATTCATTTTGTGATTAGGCACTATAAACATATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
361945 CTCATTAGGATATATGATGTTG
455 CTCATTAGGATAAATGATATTG
* *
361967 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
** * *
362032 TAAATAAGGCAAGCATTGATTCTCGTAATGGTCACCACTCTTTTCGAGATTGGGAACCAAAAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* * * * *
362097 TATTCCTTTCATTAGGATACACAACATTGAC-CATTTGATGTCGTAAGAAAAGCATTTTTTCCAA
131 CATTCCTTTCATTAGGATACGCGACATTGACGC-TTTGATGTCGCAAGAAAAGCATTTCTTCCAA
* * * * *
362161 CCGATTTTGATAGAATCAAAGTTTGGCACTTAAATAAGACAAATATGAGTAGTCGCACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * *
362226 CATTCTTTTTTGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGATAGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
*
362291 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * * * *
362356 GACAAACAAGGATTCTGGTAGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTT
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
*
362421 CTCATTAGGAT-AATGATGTTG
455 CTCATTAGGATAAATGATATTG
* *
362442 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* ** * * * * *
362507 TAAATAAGGCAAGCATTGATTCTTGTAATGGTCTGCACTTTTTTTGAGATTGGGAATCGATAACA
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
* * * * *
362572 CATTCCATTCATTAGGATGCGCGGCATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAAC
* * * * *
362637 CGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAG-CAAACGTGAATAGTCATACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
* * * *
362701 ATTCTTTTTTGGATTAGCCACCATAAACTTAGTCTTTTCATCAGGATACACGATATTGATGCTTT
261 ATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
* * ** * * *
362766 GGTTTCGTAAGAAA-GCTTCCTTCCCAGCAACATTGGTAAAGTCTAAATTTGTGCCTCAAATGTG
326 GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
* * ** * * * * *
362830 CCGAACATACATTCCAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCC
391 ACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCC
* * *
362895 TCCTTAGGATAAGTGATATGG
456 TCATTAGGATAAATGATATTG
* * * *
362916 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
* * * *
362981 TAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTTGAGATTGGGAA-CGAAAAAC
66 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCG-AAAAC
* * * * *
363045 ACATTCTTTTCATTAGGATACGCAACATTGATGCTTTGATGTCACAAGAAAAGCATCTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
* * *
363110 TCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATGAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * * *
363175 CATTCGTTTTTGGATTAGGCACCATAAACTTAGTGTTCACATAAGGATACACGATATTAACGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * * *
363240 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGT
325 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * **
363305 GACAGACATGGATTATAGTAATGATCGTCATTCACATTGTGCTTAGGCACTACGAACATATTCTC
390 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTC
* *
363370 CTCATTAGGATAAATCATGTTG
455 CTCATTAGGATAAATGATATTG
* * * *
363392 ATGATTTT-TTTTGCATGAAAATCTTTACTTTGCCCTATTTT--TCAAGACACCAATA-TTC-TT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA-A-ATCAA-AGTTCATT
*
363452 CACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACT-TTTTC-AGGATTGGGAACCA
63 C-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGA-GATTGGGAACCG
* * * * *
363515 AAAAGACATTCCTTTCATTAAGGTATA--TGATATTGACGCTTT-AGTGTCACAAAAAAAGCATT
125 AAAACACATTCCTTTCATT-AGG-ATACGCGACATTGACGCTTTGA-TGTCGCAAGAAAAGCATT
* * * * * *
363577 TCTAT-CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTTAT
187 TCT-TCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCAC
* *
363641 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTTTTTTCATAAGGATACACGATA
251 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * *
363706 TTGATGCTTTGGTTTCGTAAG-AAGGATTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGC
316 TTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGC
* * * * * *
363770 CTCAAATGTGCCGAACAAGCATTCTAGCAATGATCTTC
381 CTCAATTGTGACAAACATGGATTCTAGTAATGATCTTC
363808 TTTTGCATGG
Statistics
Matches: 5340, Mismatches: 708, Indels: 129
0.86 0.11 0.02
Matches are distributed among these distances:
466 4 0.00
467 319 0.06
468 93 0.02
469 2 0.00
470 1 0.00
471 132 0.02
472 6 0.00
473 105 0.02
474 562 0.11
475 1659 0.31
476 1909 0.36
477 540 0.10
478 8 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT
TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACA
CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
ATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
ACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCC
TCATTAGGATAAATGATATTG
Found at i:361249 original size:951 final size:950
Alignment explanation
Indices: 357223--363807 Score: 8427
Period size: 951 Copynumber: 6.9 Consensus size: 950
357213 CATTCTAGCA
* * * **
357223 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCT
* * *
357288 TAAATAAGGCAAGCA-TAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATCGGAAACGAAAAAC
66 TAAATAAGGCAAGCATTA-ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAAC
*
357352 ACATTCCTTTCATTAGGATACGCGACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAA
* *
357412 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCT
* * * * * *
357477 CATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAGGGATACACGATATTAACGGCT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* ** *
357542 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * *
357607 GACAAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTT
390 GACAAACATGGATTCTAGTAATGGTCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTT
* *
357672 CTCATTAGGATATATGATGTTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
455 CTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* **
357737 CTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGATT-TGCGTAATGGTCTCCACTTTT
520 CTTAAAATCAAATTTCATTCCTTAAATAAGGCAAGCATTGATTCT-CGTAACAGTCTCCACTTTT
** * * *
357801 TTCGAGATTGGGAATTGATAACACAGTCCTTTCATTAGGATACGCGACATTAACCCTTTGATGTC
584 TTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTC
* *
357866 GCAAGAAAAGCTTTTTTTCCAACCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAA
649 GCAAGAAAAGCTTTTCTTCCAACCG-TTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAA
* ** *
357931 TATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACTGTAAACTTAGTCTTTTCATA
713 CATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATA
* * *
357996 AGGATACACGATATTGATGCTTTTGTTTCGTAAGAAAGATTGCTTCCCACCAATTTTGGTAAAGT
778 AGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTCCTTCCCACCAATTTTGGTAAAGT
* * *
358061 CTAAGTTCTTGCCTCAAATGTGCCGAACATGCATTCTAGTAATGATCTTCATTCACGTTGTGATT
843 CTAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATT
* * * *
358126 AGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGG
908 AGGCAATATAAACTTATTCTCCTCATTAGGATAAATGATATGG
* * * *
358169 ATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCTCTTTTTTCCTTAAAGTCAAAGTTCT-TTCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT-TATTCC
* * *
358233 TTAAATAAGACAAGCA-TAGATTCTCGTAATAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAA
65 TTAAATAAGGCAAGCATTA-ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAA
* *
358297 CATATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCA
129 CACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCA
*
358362 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAATGACAAACATGAGTAGTCACACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCC
* * * * *
358427 TCATTCATTTTTGGATTAGGCACCATAAACTTAGCCTTCACATAAGGATACACGATATTAACGGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* * *
358492 TTGGTTTCATAAGAAAGGTTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTG
324 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* *
358557 TGACAAAAATGGATTCTAGTAATGGTCCTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
389 TGACAAACATGGATTCTAGTAATGGTCATCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* * * *
358622 TCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-TTGTACTCTTTTT
454 TCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTT-TGCCCTATTT
* * * * *
358686 TCCTTAAAATCAAAGTTCCTTCCTTAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCT
518 TCCTTAAAATCAAATTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTTT
* *
358751 TTTCGAGATTGGGAACCGAAAGCACATTCCTTTCATTAGGGATACGCAACATTGACCCTTTGATG
583 TTTCGAGATTGGGAACCGAAAACACATTCCTTTCATTA-GGATACGCGACATTGACCCTTTGATG
* * * *
358816 TCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTATATCTTAAATAGGATA
647 TCGCAAGAAAAGCTTTTCTTCCAACCG-TTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACA
* * *
358881 GAA-ATGAGTAGTCACACTAATCCTCATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTC
711 -AACATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTC
* * *
358945 ATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACTAATTTTGGTA
775 ATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA-GCTTCCTTCCCACCAATTTTGGTA
* * * * **
359010 AACTCTAAGTTCGTACCTCAATTGTGACAAACATGGATTCTAGTAACTG-TCTTCATTCATTTTG
839 AAGTCTAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAA-TGATCTTCATTCACGTTG
* * * * * *
359074 TGATTAGGCACTACAAACGTATTCTTCTCATTAGAATAAATGATATTG
903 TGATTAGGCAATATAAACTTATTCTCCTCATTAGGATAAATGATATGG
* * * * **
359122 ATGGTATTCTTTTGCATGG--A------C-TTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTTATTCC
* *
359177 TTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACTG-AAAA
65 TTAAATAAGGCAAGCATTAATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAAC-GAAAAA
* * * * * * * *
359241 CACATTCCTTTCGTTAGGATACGCTACATTGATGCTATGATGGCGCAGGAAAAGCTTTTCTTCCA
129 CACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCA
*
359306 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCC
*
359371 TCATTCTTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
*
359436 TTGGTTTCATAAGCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
324 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * * * * *
359501 TGGCAAACATGGATTGTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAAAGTCT
389 TGACAAACATGGATTCTAGTAATGGTCATCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* * * *
359566 CCTCATCAGTATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
454 TCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * * * * *
359631 CCTTAAAATCAAA-TTCATCCCTTAAATAAGCCAAGCATTGATTCTTGTAACACTCTCCACTCTC
519 CCTTAAAATCAAATTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTTTT
* * * *** ** * *
359695 TTCAACATTGGGAACCAAAAACACATTCCTTTCATTAGGATATATGACATTGATGCTTCGGTGTC
584 TTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTC
* * * *
359760 GTAAAAAAAGCATTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTAAAATAAGACAA
649 GCAAGAAAAGC-TTTTCTTCCAACCG-TTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAA
* * * *
359825 ACATGAATAGTCATACTAATCCTCATTCTTTTTAGGATTATGCACCATAAACTTAGACTTCTAAT
712 ACATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT
* * *
359890 AAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAT
777 AAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA-GCTTCCTTCCCACCAATTTTGGTAAA
* * * *
359955 GTCTATGTCCGTGCCTCAAATGTGACAAACATGGATTGTAGTAATGATCTTCATTCACGTTGTGA
841 GTCTAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGA
* ** * * * *
360020 TT-GGGAACTACGAACATATTCTCCTCATTATGATACATGATATTG
906 TTAGGCAA-TATAAACTTATTCTCCTCATTAGGATAAATGATATGG
* ** * * * * * *
360065 AAGATTTTCTTTTGTGTGAAAATCTTTTCTTTGCCCTATTTTCCATGACATCAATA-TCCT-TCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGT-TTATTC
* * * * * *
360128 CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCTCTCTTTTCAAGATTAGGAACCAAAAA
64 CTTAAATAAGGCAAGCATTAATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAA
* * *** * * * * *
360193 CATAGTT-CTTTCATTAAGATATATGACACTGACGCTCTGGTGTCGCAAAAAAAGCATTTCTAT-
129 CACA-TTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCT-TC
* * * * * *
360256 CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAAT
192 CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAAT
* * *
360321 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCCTCTCATAATGATATACGATATTGATG
257 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG
** * * *
360386 CG-TTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAA
322 -GTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAA
** * * ** * ** *
360450 ACGTGACAAACATGGACTCTAGTAATGATCATCATTCACAATGTGATAAGGCAGAATAAACTTAT
386 TTGTGACAAACATGGATTCTAGTAATGGTCATCATTCACTTTGTGATTAGGCACTATAAACATAT
* * * * * * *
360515 TC-TCTTATTAGGATAAATAATATGGATGATTTTCTTCTGCATGGAAATCTTTTTTTTTGCCTTA
451 TCTTCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTA
* * * * *
360579 TTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAACATTGACTCTCATACCAGTCTCCAC
515 TTTTCCTTAAAATCAAATTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAC
* * ** * **
360644 TTTTTTCGAGATTGGGAACCAAAAATACATT-CTTTTTTTAGGATACGTGACATTGACGATTTGA
580 TTTTTTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGA
* * * *
360708 TGTCTCAAGAAAAGCTTTTCTTCCAACCGTTTTCGATAGAAGCAAAGTTTATCTCTTGAATAACA
645 TGTCGCAAGAAAAGCTTTTCTTCCAACCGTTTT-GATAGAATCAAAGTTTATCTCTTAAATAAGA
* * * * *
360773 CAAACATGAGTAGTCACAATAATCCTCATTCTTTTTTGGATTAGGCACCATAAAATTAGTCATCT
709 CAAACATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCT
* * * * *
360838 CATAAGGATACAAGATATTAATGGTTTGGTTTTGTAAGAAAGCTTCCTTCCAACCAATTTTGGTA
774 CATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTCCTTCCCACCAATTTTGGTA
* * * * * * * *
360903 AAGTCTATGGTCATGCCTCAACTGTGCCAAATATGGATTCTAATAATGATCTTTATTCACGCTGT
839 AAGTCTAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGT
** * *
360968 GATTCTGCAATATAAACTTATTCTCCTCCTTAGGATAAAAGATATGG
904 GATTAGGCAATATAAACTTATTCTCCTCATTAGGATAAATGATATGG
* *
361015 ATGATTTTCTTTTGCATCGTAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCT
* * * *
361080 TAAATAAGGCAAGCATTAATTCTCATAACAATCTCCACTCTTTTCGAGATTGAGAACCAAAAAAC
66 TAAATAAGGCAAGCATTAATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAA-CGAAAAAC
** *
361145 ACATTCCTTTTTTTAGGATACGCGACATTGACGCTCTGATGTCACAAGAAAAGCATTTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAA
* *
361210 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTACATAAGACAAACATGAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCT
* * *
361275 CATTCTTTTTGGGGTTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * *
361340 TAGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGT
325 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * *
361405 GACAAACATGGATTCTAGTAGTGGT-ATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCT
390 GACAAACATGGATTCTAGTAATGGTCA-TCATTCACTTTGTGATTAGGCACTATAAACATATTCT
361469 TCTCATTAGGAT-AATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
454 TCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * * * **
361533 CCTCAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGATTCTCGAAATGGTCTCCACTTTT
519 CCTTAAAATCAAATTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTTTT
* *
361598 TTCGAGATTGGGAACCGAAAACACATTTCTTTCATTAGGATACGCAACATTGACCCTTTGATGTC
584 TTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTC
* * *
361663 GCAAAAAAAGCATTTT-TTCCAACCGATTTTGAT-GAAATCAATGTTTGTCTCTTAAATAAGACA
649 GCAAGAAAAGC-TTTTCTTCCAACCG-TTTTGATAG-AATCAAAGTTTATCTCTTAAATAAGACA
* * *
361726 AATATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA
711 AACATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA
* * * * * * *
361791 TAAGGATGCACGATATTGATGGTTTGGCTTCGTAAGGAAGGCTTTCTTCCCTCCAATTTTGTTAA
776 TAAGGATACACGATATTGATGCTTTGGTTTCGTAA-GAAAGCTTCCTTCCCACCAATTTTGGTAA
* * * * * * * **
361856 AGTCTAAGTTCGGGCCTCAATTGTGACAAACAAGGATTCTAGTAGTGGTCGTCATTCATTTTGTG
840 AGTCTAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTG
* * * * * *
361921 ATTAGGCACTATAAACATATTCTTCTCATTAGGATATATGATGTTG
905 ATTAGGCAATATAAACTTATTCTCCTCATTAGGATAAATGATATGG
361967 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTTAATTCC
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTT-ATTCC
* ** * *
362031 TTAAATAAGGCAAGCATTGATTCTCGTAATGGTCACCACTCTTTTCGAGATTGGGAACCAAAAAC
65 TTAAATAAGGCAAGCATTAATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAAC
* * * ** *
362096 ATATTCCTTTCATTAGGATACACAACATTGAC-CATTTGATGTCGTAAGAAAAGCATTTTTTCCA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGC-TTTGATGTCACAAGAAAAGCATTTCTTCCA
* * * * * *
362160 ACCGATTTTGATAGAATCAAAGTTTGGCACTTAAATAAGACAAATATGAGTAGTCGCACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCC
* * * * *
362225 TCATTCTTTTTTGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGATAGT
259 TCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
* *
362290 TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTG
324 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTG
* * * * *
362355 TGACAAACAAGGATTCTGGTAGTGGT-ATTCATTCATTTTGTGATTAGGCACTATAAACGTATTC
389 TGACAAACATGGATTCTAGTAATGGTCA-TCATTCACTTTGTGATTAGGCACTATAAACATATTC
362419 TTCTCATTAGGAT-AATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
453 TTCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * ** *
362483 TCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAATGGTCTGCACTTT
518 TCCTTAAAATCAAATTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTTT
* * * * * *
362548 TTTTGAGATTGGGAATCGATAACACATTCCATTCATTAGGATGCGCGGCATTGACCCTTTGATGT
583 TTTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGT
*
362613 CGCAAGAAAAGCATTTT-TTCCAACCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAG-CA
648 CGCAAGAAAAGC-TTTTCTTCCAACCG-TTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACA
* * *
362676 AACGTGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGCCACCATAAACTTAGTCTTTTCA
711 AACATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA
* * **
362741 TCAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTCCTTCCCAGCAACATTGGTAAA
776 TAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTCCTTCCCACCAATTTTGGTAAA
* * * ** *
362806 GTCTAAATTTGTGCCTCAAATGTGCCGAACATACATTCCAGTAATGATCTTCATTCACGTTGTGA
841 GTCTAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGA
* * * *
362871 TTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGG
906 TTAGGCAATATAAACTTATTCTCCTCATTAGGATAAATGATATGG
* * * **
362916 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCT
* * *
362981 TAAATAAGGCAAGCA-TAGATTCTTGTAACAGTTTCCACTCTTTTTGAGATTGGGAACGAAAAAC
66 TAAATAAGGCAAGCATTA-ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAAC
* * * *
363045 ACATTCTTTTCATTAGGATACGCAACATTGATGCTTTGATGTCACAAGAAAAGCATCTCTTCCAA
130 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAA
* *
363110 TCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATGAGTAGTCACACTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCT
* * * * *
363175 CATTCGTTTTTGGATTAGGCACCATAAACTTAGTGTTCACATAAGGATACACGATATTAACGGTT
260 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* * *
363240 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGT
325 TGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT
* * * * * * ** *
363305 GACAGACATGGATTATAGTAATGATCGTCATTCACATTGTGCTTAGGCACTACGAACATATTCTC
390 GACAAACATGGATTCTAGTAATGGTCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTT
* * *
363370 CTCATTAGGATAAATCATGTTGATGATTTT-TTTTGCATGAAAATCTTTACTTTGCCCTATTTT-
455 CTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* *
363433 -TCAAGACA-CCAATATTC-TTCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCAC
520 CTTAA-A-ATCAAAT-TTCATTC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-TCCAC
* * * * *
363495 -TTTTTC-AGGATTGGGAACCAAAAAGACATTCCTTTCATTAAGGTATA--TGATATTGACGCTT
580 TTTTTTCGA-GATTGGGAACCGAAAACACATTCCTTTCATT-AGG-ATACGCGACATTGACCCTT
* * * * * *
363556 T-AGTGTCACAAAAAAAGCATTTCTAT-CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAA
642 TGA-TGTCGCAAGAAAAGCTTTTCT-TCCAACCG-TTTTGATAGAATCAAAGTTTATCTCTTAAA
* *
363619 TAAGACAAACATAAATAGTTATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
704 TAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
* * * *
363684 TTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAGGATTCCTTCCCACCAATTT
769 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTCCTTCCCACCAATTT
* * * *
363749 TGGTAAAGTCTAAGTTCGTGCCTCAAATGTGCCGAACAAGCATTCTAGCAATGATCTTC
834 TGGTAAAGTCTAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTC
363808 TTTTGCATGG
Statistics
Matches: 4909, Mismatches: 656, Indels: 144
0.86 0.11 0.03
Matches are distributed among these distances:
942 36 0.01
943 344 0.07
944 440 0.09
945 5 0.00
946 148 0.03
947 3 0.00
948 14 0.00
949 670 0.14
950 602 0.12
951 1613 0.33
952 828 0.17
953 204 0.04
954 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (950 bp):
ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCT
TAAATAAGGCAAGCATTAATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACA
CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATTTCTTCCAAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
ATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
ACAAACATGGATTCTAGTAATGGTCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTTC
TCATTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAAATTTCATTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTTTTTT
CGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATACGCGACATTGACCCTTTGATGTCGC
AAGAAAAGCTTTTCTTCCAACCGTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAT
GAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG
ATACACGATATTGATGCTTTGGTTTCGTAAGAAAGCTTCCTTCCCACCAATTTTGGTAAAGTCTA
AGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGG
CAATATAAACTTATTCTCCTCATTAGGATAAATGATATGG
Found at i:361451 original size:158 final size:157
Alignment explanation
Indices: 361274--362448 Score: 467
Period size: 158 Copynumber: 7.4 Consensus size: 157
361264 ACACTAATCC
* * * * * *
361274 TCATTCTTTTTGGGGTTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATACACGATATTGATGAT
* * * *
361339 TTAGTTTCGTAAGAAAGGC-TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATT
65 TT-GTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTAAAT
**
361403 GTGACAAACATGGATTCTAGTAGTGGTAT
129 AAGACAAACATGGATTCTAGTAGTGGTAT
* * * *
361432 TCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATA-ATGATGTTGATGAT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATACACGATATTGATGA-
* * * * * * ** * ** * * ****
361496 TTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTCAAAATCAAATTTAATTCCTTAA
64 TTTGTTTCGTA-AGAAAGGCATTTCTTCCCACCAATTTTGAT-AAAGTCAAAGTTCGGGCCTTAA
* * * * * *
361559 ATAA-AGCAAGCATTGATTCTCGAAATGGTCT
127 ATAAGA-CAAACATGGATTCTAGTAGTGGTAT
* * * * ** * * * *
361590 CCACTT-TTTTCGAGATTGGGAACCGA-AAACACATTTCTT-TCATTAGGATACGCAACATTGAC
1 TCA-TTCTTTT-GTGATTAGGCACC-ATAAACTTA-TTCTTCTCATTAGGATACACGATATTGAT
** * * * * * * * * * *
361652 CCTTTGATGTCGCAAAAAAAGCATTTTTTCCAACCGATTTTGATGAAA-TCAATGTT-TGTCTCT
62 GATTTG-TTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGAT-AAAGTCAAAGTTCGGGC-CT
* * * * * **
361715 TAAATAAGACAAATATGAGTAGTCACACTAATCCTCAT
124 TAAATAAGACAAACATG-G-ATTC-TAGTAGTGGT-AT
* * * *
361753 TC-TT-TTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTT
1 TCATTCTTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATACACGATATTGATGATT
* * * * * * * *
361815 TGGCTTCGTAAGGAAGGC-TTTCTTCCCTCCAATTTTGTTAAAGTCTAAGTTCGGGCCTCAATTG
66 T-GTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTAAATA
* * **
361879 TGACAAACAAGGATTCTAGTAGTGGTCG
130 AGACAAACATGGATTCTAGTAGTGGTAT
* * * * *
361907 TCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATATATGATGTTGATGAT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATACACGATATTGATGA-
* * * * * * ** * ** * * ****
361972 TTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAATTTAATTCCTTAA
64 TTTGTTTCGTA-AGAAAGGCATTTCTTCCCACCAATTTT-GATAAAGTCAAAGTTCGGGCCTTAA
* * * * *
362035 ATAAGGCAAGCATTGATTCTCGTAATGGTCA-
127 ATAAGACAAACATGGATTCTAGTAGTGGT-AT
* * * * * * * * * **
362066 CCACTCTTTTCGAGATTGGGAACCAAAAACATATTCCTT-TCATTAGGATACACAACATTGACCA
1 TCATTCTTTT-GTGATTAGGCACCATAAACTTATT-CTTCTCATTAGGATACACGATATTGATGA
* * * * * *
362130 TTTGATGTCGTAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAA-TCAAAGTT-TGGCACTTA
64 TTTG-TTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATA-AAGTCAAAGTTCGGGC-CTTA
* * * ***
362193 AATAAGACAAATAT-GA--GTAGTCGCACTAAT
126 AATAAGACAAACATGGATTCTAGTAGTGGT-AT
* * * * * * *
362223 CCTCATTCTTTTTTGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGAT-
1 --TCATTCTTTTGT-GATTAGGCACCATAAACTTATTCTTCTCATTAGGATACACGATATTGATG
* * *
362287 AGTTTGGTTTCGTAAGAAAGGC-TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCA
63 A-TTT-GTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTA
* ** * *
362351 ATTGTGACAAACAAGGATTCTGGTAGTGGTAT
126 AATAAGACAAACATGGATTCTAGTAGTGGTAT
* * * *
362383 TCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATA-ATGATGTTGATGAT
1 TCATTC-TTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATACACGATATTGATGAT
362447 TT
65 TT
362449 TCTTTTGCAT
Statistics
Matches: 712, Mismatches: 251, Indels: 109
0.66 0.23 0.10
Matches are distributed among these distances:
154 2 0.00
155 7 0.01
156 8 0.01
157 52 0.07
158 312 0.44
159 281 0.39
160 30 0.04
161 14 0.02
162 4 0.01
163 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (157 bp):
TCATTCTTTTGTGATTAGGCACCATAAACTTATTCTTCTCATTAGGATACACGATATTGATGATT
TGTTTCGTAAGAAAGGCATTTCTTCCCACCAATTTTGATAAAGTCAAAGTTCGGGCCTTAAATAA
GACAAACATGGATTCTAGTAGTGGTAT
Found at i:364673 original size:879 final size:881
Alignment explanation
Indices: 362916--364686 Score: 2688
Period size: 879 Copynumber: 2.0 Consensus size: 881
362906 AGTGATATGG
*
362916 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
* * *
362981 TAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTTGAGATTGGGAACGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
* *
363046 CATTCTTTTCATTAGGATACGCAACATTGATGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAT
131 CATTCCTTTCATTAGGATACGCAACATT-ATGC-TTGATGTCACAAGAAAAGCATCTCTTCCAAC
*
363111 CGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
194 CGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATCAGTAGTCACACTAATCCTC
* * *
363176 ATTCGTTTTTGGATTAGGCACCATAAACTTAGTGTTCACATAAGGATACACGATATTAACGGTTT
259 ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGCTT
* * * *
363241 GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGTG
324 GGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAAATGTG
* * * *
363306 ACAGACATGGATTATAGTAATGATCGTCATTCACATTGTGCTTAGGCACTACGAACATATTCTCC
389 ACAAACAAGGATTATAGTAATGATCGTCATTCACATTGTGATTAGGCACTACAAACATATTCTCC
363371 TCATTAGGATAAATCATGTTGATGATTTTTTTTGCATGAAAATCTTTACTTTGCCCTATTTTTCA
454 TCATTAGGATAAATCATGTTGATGATTTTTTTTGCATGAAAATCTTTACTTTGCCCTATTTTTCA
* *
363436 AGACACCAATATTCTTCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACTTTTTC
519 AGACACAAATATTATTCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACTTTTTC
* * * *
363501 AGGATTGGGAACCAAAAAGACATTCCTTTCATTAAGGTATATGATATTGACGCTTTAGTGTCACA
584 AGGATTGGGAACCAAAAACACAGTCCTTTCATTAAGGTATATGACATTGACCCTTTAGTGTCACA
* *
363566 AAAAAAGCATTTCTATCAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACAT
649 AAAAAAGCATTTCTATCAACCGATTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
363631 AAATAGTTATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTTTTTTCATAAGG
714 AAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTTTCATAAGG
*
363696 ATACACGATATTGATGCTTTGGTTTCGTAAGAAGGATTCCTTCCCACCAATTTTGGTAAAGTCTA
779 ATACACGATATTGATGCTTTGGTTTCGTAAGAAAGATTCCTTCCCACCAATTTTGGTAAAGTCTA
363761 AGTTCGTGCCTCAAATGTGCCGAACAAGCATTCTAGCA
844 AGTTCGTGCCTCAAATGTGCCGAACAAGCATTCTAGCA
*
363799 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
363864 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
*
363929 CATTCCTTTCATTAGGATACGCGACA-T-TG-TTGATGTCACAAGAAAAGCATCTCTTCCAACCG
131 CATTCCTTTCATTAGGATACGCAACATTATGCTTGATGTCACAAGAAAAGCATCTCTTCCAACCG
* *
363991 TTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCACACTAATCCTCAT
196 TTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATCAGTAGTCACACTAATCCTCAT
*
364056 TCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAGGGATACACGATATTAACGGCTTGG
261 TCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGCTTGG
*
364121 TTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGTGAC
326 TTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAAATGTGAC
* * * * ** ** * *
364186 AAACAAGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTTCTC
391 AAACAAGGATTATAGTAATGATCGTCATTCACATTGTGATTAGGCACTACAAACATATTCTCCTC
* * * * *
364251 ATTAGGATATATGATGTTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
456 ATTAGGATAAATCATGTTGATGATTTT-TTTTGCATGAAAATCTTTACTTTGCCCTATTTT--TC
**
364316 AA-A-ATCAAAT-TTAATTC-CTTAAATAAGGCAAGCATTGATT-TGCGTAATGGTC-TCCACTT
518 AAGACA-CAAATATT-ATTCACTTAAATAAGGCAAGCATTGATTCT-CGTAACAGTCTTCCAC-T
*** *
364375 TTTTC-GAGATTGGGAATTGATAACACAGTCCTTTCATT-AGG-ATATGCGACATTGACCCTTT-
579 TTTTCAG-GATTGGGAACCAAAAACACAGTCCTTTCATTAAGGTATAT--GACATTGACCCTTTA
* * * * *
364436 GATGTCGCAAGAAAAGCATTT-TTTCCAACCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATA
641 G-TGTCACAAAAAAAGCATTTCTAT-CAACCGATTTTGATAGAACCAAAGTTTGTCTCTTAAATA
* * **
364500 AGACAAACATGAATGGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACTGTAAACTTAGTCT
704 AGACAAACATAAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCT
* *
364565 TTTCATAAGGATACACGATATTGATGCTTTTGTTTCGTAAGAAAGATTGCTTCCCACCAATTTTG
769 TTTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGATTCCTTCCCACCAATTTTG
* * *
364630 GTAAAGTCTAAGTTCTTGCCTCAAATGTGCCGAACATGCATTCTAGTA
834 GTAAAGTCTAAGTTCGTGCCTCAAATGTGCCGAACAAGCATTCTAGCA
364678 ATGATCTTC
1 ATGATCTTC
364687 ATTCACGTTG
Statistics
Matches: 806, Mismatches: 70, Indels: 28
0.89 0.08 0.03
Matches are distributed among these distances:
877 4 0.00
878 304 0.38
879 335 0.42
880 10 0.01
881 3 0.00
882 1 0.00
883 149 0.18
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (881 bp):
ATGATCTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
CATTCCTTTCATTAGGATACGCAACATTATGCTTGATGTCACAAGAAAAGCATCTCTTCCAACCG
TTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAAGACAAACATCAGTAGTCACACTAATCCTCAT
TCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGCTTGG
TTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAAATGTGAC
AAACAAGGATTATAGTAATGATCGTCATTCACATTGTGATTAGGCACTACAAACATATTCTCCTC
ATTAGGATAAATCATGTTGATGATTTTTTTTGCATGAAAATCTTTACTTTGCCCTATTTTTCAAG
ACACAAATATTATTCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACTTTTTCAG
GATTGGGAACCAAAAACACAGTCCTTTCATTAAGGTATATGACATTGACCCTTTAGTGTCACAAA
AAAAGCATTTCTATCAACCGATTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATAA
ATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTTTCATAAGGAT
ACACGATATTGATGCTTTGGTTTCGTAAGAAAGATTCCTTCCCACCAATTTTGGTAAAGTCTAAG
TTCGTGCCTCAAATGTGCCGAACAAGCATTCTAGCA
Found at i:365260 original size:158 final size:160
Alignment explanation
Indices: 365003--366204 Score: 408
Period size: 159 Copynumber: 7.6 Consensus size: 160
364993 ACACTAATCC
* * * * ** * * * * *
365003 TCATTCAATTT-TGGATTAGGCACCATAAACTTAGCCTTCACATAAGGATACACGATATTAACGG
1 TCATTCACTTTGTAGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGACGA
* * * *
365067 TTTG-GTTT-CATAAGAAAGGTTTT-TTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCA
66 TTTGCTTTTGCATGA-AAAGCTTTTCTTT-CCACCAATTTTGTTAAAGTCAAAGTTCGTGCCTCA
* ** *
365129 ATTGTGACAAAAATGGATTCTAGTAATGGTCT
129 AATAAGACAAAAATGGATTCTAGTAATAGTCT
* *
365161 TCATTCACTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGA
1 TCATTCACTTTGTAGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGACGA
* * * * * ** * *
365225 TTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCAATTTTGCTTAAAATCAAATTTAATTCCTTAA
66 TTTGCTTTTGCATGAAAAGCTTTTCTTTCCACCAATTTTG-TTAAAGTCAAAGTTCGTGCCTCAA
* ** * * *
365289 ATAAGGCAAGCATTGATTCTTGTAACAGTC-
130 ATAAGACAAAAATGGATTCTAGTAATAGTCT
* * * * * * ** *
365319 TC-TACTCTTT-TCAAGATT-GGGAATGAAAAACACATTCCTT-TCATTAGGATACGCGACATTG
1 TCATTCACTTTGT--AGATTAGGCACT-ATAAACATATT-CTTCTCATTAGGATAAACGATATTG
* * * ** * * * ** * * * *
365380 ACGCTTTGATGTCACAAGAAAAGCATCTC-TTCCAACCGTTTTTGATAGATTCAAAGTTTGT-CT
62 ACGATTTGCTTTTGCATGAAAAGCTTTTCTTTCC-ACCAATTTTGTTAAAGTCAAAGTTCGTGC-
* * * * * *
365443 CTTAAAAAAGACAAACAT-GA--GTAGTCACACTAATCC
125 CTCAAATAAGACAAAAATGGATTCTAGT-A-A-TAGTCT
* * * * * ** * * *
365479 TCATTC-GTTTTTGGATTAGGCACCATAAACTTAGCCTTCAT-ATAAGGATACACGATATTAACG
1 TCATTCACTTTGTAGATTAGGCACTATAAACATATTCTTC-TCATTAGGATAAACGATATTGACG
* * * * *
365542 GTTTGGTTTT--ATAAGAAAGGTTTT-TTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTC
65 ATTTGCTTTTGCATGA-AAAGCTTTTCTTT-CCACCAATTTTGTTAAAGTCAAAGTTCGTGCCTC
* ** * *
365604 AATTGTGACAAAAGTGGATTCTAGTAATGGTCT
128 AAATAAGACAAAAATGGATTCTAGTAATAGTCT
* * *
365637 TCATTCACTTTGT-GATTCGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGA
1 TCATTCACTTTGTAGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGACGA
* * * * * * ** * *
365701 TTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCAATTTTCCTTAAAATCAAATTTAATTCCTTAA
66 TTTGCTTTTGCATGAAAAGCTTTTCTTTCCACCAATTTT-GTTAAAGTCAAAGTTCGTGCCTCAA
* ** * * *
365765 ATAAGGCAAGCATTGATTCTTGTAACAGTC-
130 ATAAGACAAAAATGGATTCTAGTAATAGTCT
* * * * * * * * * *
365795 TC-TACTCTTT-TCAAGATT-GGGAATGAAAAACACATTCCTT-TAATTAGGATAGATGACATTG
1 TCATTCACTTTGT--AGATTAGGCACT-ATAAACATATT-CTTCTCATTAGGATAAACGATATTG
* * * * * * * * ** * *
365856 ATGCTCTGATGTCGCAAGAAAAGCATTTC-TTCCAACCGTTTTTGATAGAA-TCAAAGCTT-AT-
62 ACGATTTGCTTTTGCATGAAAAGCTTTTCTTTCC-ACCAATTTTGTTA-AAGTCAAAG-TTCGTG
* * * * * * *
365917 CTCTCAAATAAGGCAAACAT-GAGTACTCACT-CTAATCC
124 C-CTCAAATAAGACAAAAATGGA-TTCT-AGTAATAGTCT
* * * * * * * * * *
365955 TCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATTTTGACGG
1 TCATTCACTTTGTAGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGACGA
* * * * * * * * * *
366019 TTTGGTTTCGTA-CAAAAGGTTTTCTTCCCACCAATTTTGGTAAAGTCTAAGCTCGTGCCTCAAT
66 TTTGCTTTTGCATGAAAAGCTTTTCTTTCCACCAATTTTGTTAAAGTCAAAGTTCGTGCCTCAAA
** * * *
366083 TGTGACAAACATGGATTCTAGTAGTGGTCT
131 TAAGACAAAAATGGATTCTAGTAATAGTCT
* * * * * * *
366113 TTATTCATTTTGT-GATTAGGCATTATAATCGTATTCTTCTCATTAGGATAAATGATATTGATGA
1 TCATTCACTTTGTAGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGACGA
* *
366177 TTTTCTTTTGCATGAAAATCTTTTCTTT
66 TTTGCTTTTGCATGAAAAGCTTTTCTTT
366205 GCCCTATTTT
Statistics
Matches: 737, Mismatches: 247, Indels: 119
0.67 0.22 0.11
Matches are distributed among these distances:
156 5 0.01
157 21 0.03
158 292 0.40
159 354 0.48
160 55 0.07
161 10 0.01
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (160 bp):
TCATTCACTTTGTAGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGACGA
TTTGCTTTTGCATGAAAAGCTTTTCTTTCCACCAATTTTGTTAAAGTCAAAGTTCGTGCCTCAAA
TAAGACAAAAATGGATTCTAGTAATAGTCT
Found at i:367062 original size:476 final size:476
Alignment explanation
Indices: 363799--367061 Score: 4569
Period size: 476 Copynumber: 6.9 Consensus size: 476
363789 CATTCTAGCA
* * * * * **
363799 ATGATCTTCTTTTGCATGGAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCTTCCT
1 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
* *
363864 TAAATAAGGCAAGCATAGATTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGAAACGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACA
363929 CATTCCTTTCATTAGGATACGCGACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
* * *
363989 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATCAGTAGTCACACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
* *
364054 ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAGGGATACACGATATTAACGGCTT
261 ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTT
* * * *
364119 GGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGTG
326 GGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTG
* * * *
364184 ACAAACAA-GGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTT
391 ACAAA-AATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTT
* *
364248 CTCATTAGGATATATGATGTTG
455 CTCATTAGGATAAATGATATTG
*
364270 ATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
* ** * * *
364335 TAAATAAGGCAAGCATTGATT-TGCGTAATGGTCTCCACTTTTTTCGAGATTGGGAATTG-ATAA
66 TAAATAAGGCAAGCATAGATTCT-CGTAACAGTCTCCACTCTTTTCGAGATTGGGAA-CGAAAAA
* * * * * *
364398 CACAGTCCTTTCATTAGGATATGCGACATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCA
129 CACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCA
* * * * *
364463 ACCGATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATGGTCATACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCC
* ** ** * * *
364528 TCATTCTTTTTTGGATTAGGCACTGTAAACTTAGTCTTTTCATAAGGATACACGATATTGATGCT
259 TCATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGT
* * * * * * *
364593 TTTGTTTCGTAAGAAA-GATTGCTTCCCACCAATTTTGGTAAAGTCTAAGTTCTTGCCTCAAATG
324 TTGGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTG
* * * * * * * * *
364657 TGCCGAACATGCATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCT
389 TGACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
* * * *
364722 CCTCCTTAGGATAAGTGATATGG
454 TCTCATTAGGATAAATGATATTG
* * * * * * **
364745 ATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCTCTTTTTTCCTTAAAGTCAAAGTTCTTTCCT
1 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
* *
364810 TAAATAAGGCAAGCATAGATTCTCGTAATAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACA
364875 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
*
364940 CGTTTTTGATAGAATCAAAGTTTATCTCTTAAA-AATGACAAACATGAGTAGTCACACTAATCCT
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GACAAACATGAGTAGTCACACTAATCCT
* *
365004 CATTCAATTTTGGATTAGGCACCATAAACTTAGCCTTCACATAAGGATACACGATATTAACGGTT
260 CATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTT
*
365069 TGGTTTCATAAGAAAGGTTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGT
325 TGGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGT
365134 GACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTT
390 GACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTT
365199 CTCATTAGGATAAATGATATTG
455 CTCATTAGGATAAATGATATTG
* *
365221 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTGCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
* * * * *
365286 TAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCTACTCTTTTCAAGATTGGGAATGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACA
365351 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
* *
365416 CGTTTTTGATAGATTCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
* * *
365481 ATTCGTTTTTGGATTAGGCACCATAAACTTAGCCTTCATATAAGGATACACGATATTAACGGTTT
261 ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTT
* *
365546 GGTTTTATAAGAAAGGTTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTG
326 GGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTG
* *
365611 ACAAAAGTGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTCGGCACTATAAACATATTCTTC
391 ACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTC
365676 TCATTAGGATAAATGATATTG
456 TCATTAGGATAAATGATATTG
*
365697 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAATTTAATTCCT
1 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
* * * * *
365762 TAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCTACTCTTTTCAAGATTGGGAATGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACA
* * * * * *
365827 CATTCCTTTAATTAGGATA-GATGACATTGATGCTCTGATGTCGCAAGAAAAGCATTTCTTCCAA
131 CATTCCTTTCATTAGGATACG-CGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAA
* * * * * *
365891 CCGTTTTTGATAGAATCAAAGCTTATCTCTCAAATAAGGCAAACATGAGTACTCACTCTAATCCT
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCT
* * * *
365956 CATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATTTTGACGGTT
260 CATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTT
* * *
366021 TGGTTTCGTACA-AAAGGTTTTCTTCCCACCAATTTTGGTAAAGTCTAAGCTCGTGCCTCAATTG
325 TGGTTTCATA-AGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTG
* * * * * * *
366085 TGACAAACATGGATTCTAGTAGTGGTCTTTATTCATTTTGTGATTAGGCATTATAATCGTATTCT
389 TGACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCT
366150 TCTCATTAGGATAAATGATATTG
454 TCTCATTAGGATAAATGATATTG
* *
366173 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAACAAATTTAATTCCG
1 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
* * * * *
366238 TAAATGAGGCAAGGACT-GATTCTCATAACGGTCTCCACTCTTTTTGAGATTTGGGAACTG-AAA
66 TAAATAAGGCAAGCA-TAGATTCTCGTAACAGTCTCCACTCTTTTCGAGA-TTGGGAAC-GAAAA
*** * * ** *
366301 GTGCATTCCTTTCATTAGGATACGCAACATTGACCCTTTGATGTTGCAAGAAAAGCATTTCTTCC
128 ACACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCC
*
366366 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAAT
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAAT
* * * * *
366430 CCTCATTCTTTTTTTTGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGAT
257 CCTCATTC-ATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAAC
* * * * * * *
366495 GCTTTGGTTTCGTAAGAAA-GCTTCCTTCCCAGCAATTTTGGTAAAGTCTAAATTCGTGCCTCAA
321 GGTTTGGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
* * * * * * * * ** *
366559 ATGTGCCGAACATGCATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTAGAATAAACTTAT
386 TTGTGACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATAT
* * * *
366624 TCTCCTCCTTAGGATAAGTGATATGG
451 TCTTCTCATTAGGATAAATGATATTG
* * * * * ** *
366650 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCC
1 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
* * * *
366715 TAAATAAGGCAAGCGTAGATTCTCATAACAGTTTCCACTCTTTTCGAGATTAGGAACGAAAAACA
66 TAAATAAGGCAAGCATAGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACA
* * *
366780 CATTCCTTTCATTAGGATATGCAACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAT
131 CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
366845 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
196 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
* *
366910 ATTCATTTTTGGATTAGGCACCGTAAACTTAGTCTTCACATAAGGATACACGATATTAATGGTTT
261 ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTT
**
366975 GGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTCATTAAAGTCTAAGTTCGTGCCTCAATTGTG
326 GGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTG
367040 ACAAAAATGGATTCTAGTAATG
391 ACAAAAATGGATTCTAGTAATG
367062 AAAATATTTT
Statistics
Matches: 2480, Mismatches: 286, Indels: 47
0.88 0.10 0.02
Matches are distributed among these distances:
470 1 0.00
471 136 0.05
472 1 0.00
474 4 0.00
475 474 0.19
476 1451 0.59
477 340 0.14
478 73 0.03
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (476 bp):
ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCT
TAAATAAGGCAAGCATAGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACA
CATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
ATTCATTTTTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTT
GGTTTCATAAGAAAGGTTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTG
ACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTC
TCATTAGGATAAATGATATTG
Found at i:368968 original size:476 final size:476
Alignment explanation
Indices: 367063--385305 Score: 22608
Period size: 476 Copynumber: 38.4 Consensus size: 476
367053 CTAGTAATGA
* * * * * *
367063 AAATATTTTCTTTGCCCTATTTTTCATGACACCAATA-TTC-TTCCCTTAAATAAGGCAAGCATT
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTTCATT-CCTTAAATAAGGCAAGCATT
* *
367126 GATTCTCGTAACAGTCTTCCACT-TTTTC-AGGATTGGGAACCAAAAAGACATTCCTTTCATTAA
64 GATTCTCGTAACAGTC-TCCACTCTTTTCGA-GATTGGGAACCAAAAACACATTCCTTTCATTAG
*** * * * *
367189 GATATATGATATTGACGCTTT-AGTGTGGCAAAAAAAGCATTTCTAT-CAACCGTTTTTGATAGT
127 GATACGCGACATTGACGCTTTGA-TGTCGCAAGAAAAGCATTTCT-TCCAACCGTTTTTGATAGA
* * * * * *
367252 ACCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTTATACTAATCCTCATTCTTTTTTGGA
190 ATCAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGA
*
367317 TTAGGCACCATAAACTTAGTCTTTTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAA
255 TTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAA
* * * * *
367382 A-GCTTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGCCGAACATGCATT
320 AGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATT
* * * * * *
367446 CTAGCAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAG
385 CTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAA
*
367511 TGATATGGATGATTTTCTTTTGCATGG
450 TGATATTGATGATTTTCTTTTGCATGG
* * *
367538 AAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCTTTCCTTAAATAAGGCAAGCATAGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * **
367603 TTCTCGTAACAGTTTCCACTCTTTTC-ACGATTGGAAAAGAAAAACACATTCCTTTCATTAGGAT
66 TTCTCGTAACAGTCTCCACTCTTTTCGA-GATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* * *
367667 ACGCGACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAACCATTTTTGATAGAATCAA
130 ACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAA
* *
367727 AGTTTATCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTCATTCGTTTTTGGATTAGG
195 AGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * *
367792 CACCATAAACTTAGTCTTCACATAAGGATACACGATATTAAGGGTTTGGTTTCATAAGAAAGGCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
** *
367857 TTCTTCCCACCAATTTTATTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAAC-TAGGATTCTAG
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT-GGATTCTAG
* * * * * *
367921 -AAGTGGTCTTCATTTAGTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATATATGA
389 TAA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGA
*
367985 TGTTGATGATTTTCTTTTGCATGG
453 TATTGATGATTTTCTTTTGCATGG
* * *
368009 AAATCTTTTCTTTGCCCTGTTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
** * *** *
368074 TTCTCGTAATGGTCTCCACTTTTTTCGAGATTGGGAATTGATAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * * * *
368139 CGCGGCATTGACCCTTTGATGTCGAAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* * * *
368204 GTTT-T-TC-T-CATAAGACAAACGTGAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGC
196 GTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
*
368265 ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA-GCTT
261 ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTT
* * * * *
368329 CCTTCCCAGCAATTTTGGTAAAGTCTAAATTCGTGCCTCAAATGTG-CAGAACATGCATTCTAGT
326 TCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACA-AACATGGATTCTAGT
* * *** * *
368393 AACGATCTTCATTCACGTTGTGATTAGGTGGTATAAACTTATTCTCCTCCTTAGGATAAGTGATA
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATA
*
368458 TGGATGATTTTCTTTTGCATGG
455 TTGATGATTTTCTTTTGCATGG
* * * * * *
368480 AAATCTTTTTTTTGCTCTTTTTTCCTTAAAGTCAAAGTTCTTTCCTTAAATAAGGCAAGCATAGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * *
368545 TTCTCGTAACAGTTTCCACTCTTTTCGAGATTGTGAACAAAAAACACATTCCTTTTATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * *
368610 CGTGACATTGACGCTTTGATGTCACAAGAAAAGCATCTCTTCCAACCGTTTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* * *
368675 GTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTCATTCGTTTTTGGATTAGGC
196 GTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
* * * * * * *
368740 ACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTAGGTTTCATAGGAAAGGTTT
261 ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTT
*
368805 TCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTA
326 TCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTA
* * * *
368870 ACGATCATCATTCACTTTGTGATTAGGCATTATAAACTTATTCTCCTCATGAGGATAAATGATAT
391 ATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATAT
*
368935 GGATGATTTTCTTTTGCATGG
456 TGATGATTTTCTTTTGCATGG
* * * * ** *
368956 AAATCTTTTTTTTTGCCCTATTTTCCTTCAAATCAAATTTAATTTGTTATATAAGGCAAGCATTG
1 AAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* *
369021 ATTCTCGTAACACTTTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
65 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* *
369086 ACGCGACATTGATGCTTTGATGAT-GCAAGAAAAGCATTTCTTCCAATCGTTTTTGATAGAATCA
130 ACGCGACATTGACGCTTTGATG-TCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCA
* *
369150 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTAATTATTTTTTGGATTAG
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* ** * *
369215 GCACC-TAAACTTAGTCTTTTCATAAGGATACAAAATAATGATGGTTTGGTTTCGTAAGAAGGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
369279 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * * * * * * * *
369344 TAGTGGTCTTTATTCATTTTGTGATTAGGCATTATAATCATATTCTTCTCGTTAGGATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
369409 ATTGATGATTTTCTTTTGCATGG
454 ATTGATGATTTTCTTTTGCATGG
* * * * * *
369432 AAAACTTTTCTTTGCCCTATTTTCCTTAAAAACAAATTTAATT-CTGTAAATGAGGCAAGCACTG
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCT-TAAATAAGGCAAGCATTG
* * *
369496 ATTCTCGTAAC-GATCTCCACTCTTTTTGAGATTGGGAACCGAAAGCACATTCCTTTCATTAGGA
65 ATTCTCGTAACAG-TCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
* * *
369560 TACGCAACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACTGTTTTTGATAGAATCA
129 TACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCA
*
369625 AAGTTTATCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTA
194 AAGTTTATCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTA
* * *
369689 GGCACCATGAACTTAGTCTTCTCATAAGGATAAATGATATTGATGGTTTGGTTTCGTAAGAAAGG
258 GGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGG
* * * *
369754 CTTTCTTCCCACTAATTTTTGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACATGGATTCTA
323 CTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTA
* * * *
369819 GTAACTG-TCTTCATTCATTTTGTGATTAGGCACTACAAACTTATTCTTCTCATTAGAATAAATG
388 GTAA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATG
* * *
369883 ATATTGATGGTATTCTTTTGCGTGG
452 ATATTGATGATTTTCTTTTGCATGG
* **
369908 --A------C-TTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCCTTAAATAA-G--AGCATTG
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* * *
369960 ATTCTCGTAACAGACTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCTTTCGTTAGGAT
65 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* * * * * *
370025 ACACTACATTGATGCTATGATGGT-GCAAGGAAAGCTTTTCTTCCAACCGTTTTTGATAGAATCA
130 ACGCGACATTGACGCTTTGAT-GTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCA
* * *
370089 AAGTTTATCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTCTCATTCTTTTCTGGATTAG
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * *
370154 GCACCATAAACTTGGTCTTCTCATAAGGATACACGATATTGATCGCTTGGTTTCGTAAGAAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* *
370219 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACATGGATTGTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * ** * * *
370284 TAATGATGTTCATTCACTTTGTGATTAGGCACTACAAACAAAGTCTCCTCATCAGTATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
* *
370349 ATTGATGATTGTCTTTTGTATGG
454 ATTGATGATTTTCTTTTGCATGG
* *
370372 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCATCCCTTAAATAAGCCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * *
370436 TTCTTGTAACAGTCTCCACTCTTTTCAACATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
*** * * * * * *
370501 TATGACATCGATGCTTTGGTGTCGTAAGAAAAAGCATTTTCTTTCAACCGTTTTTGATAAAATCA
131 CGCGACATTGACGCTTTGATGTCGCAAG-AAAAGCA-TTTCTTCCAACCGTTTTTGATAGAATCA
* * * * * *
370566 AAGTTTATCTCTAAAATAAGACAAATATGAATAGTCATACTAATCCTCATTCTTTTTAGGATTAT
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * * *
370631 GCACCATAAACTT-GACTTCTCATAAGGATACGCGATATTGAAGCTTTGGTTTCGTAAGAAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* * * * * *
370695 TTTCTTCCCACCAATTTTGGTAACGTCGATGTCCGTGCCTCAAATGTGACAAACATGGATTGTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * * ** * *
370760 TAATGATCTTCATTCACGTTGTGATTGGGAACTACGAACATATTCTCCTCATTATGATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
* *
370825 ATTGAAGATTTTCTTTTGCATGA
454 ATTGATGATTTTCTTTTGCATGG
* * * * *
370848 AAATCTTTTCTTTGCCCTATTTTCCATGACATC-AA-TATCCTTCCCCTAAATAAGGCAAGCATT
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATT-CCTTAAATAAGGCAAGCATT
* * * * * * * *
370911 GATTCTCGTAACAGTCTTCTCTC-TTTCAATATTAGGAACCAAAAACATAGTT-CTTTCTTTAAG
64 GATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGG
*** * * * * * *
370974 ATATATGACACTGACGCTTTGGTGCCGCAAAAAAAGCATTTCTAT-CAACCGTTTTTGATAGTAC
128 ATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACCGTTTTTGATAGAAT
* * * * *
371038 CAAAGTTTGTCTTTTAAATAAGACAAACAAGAATAGTCATACTAATCCTCATTCTTTTTTGGATT
192 CAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATT
* * *
371103 AGGCACCATAAACTTAGTCTTCTCATAATGATATACGATATTGATGCG-TTGGTTTTGTAAGAAA
257 AGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTTCGTAAGAAA
* * * * ** *
371167 TGCTTTCTGCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAAACGTGACAAACATGGACTC
321 GGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* ** * ** * *
371232 TAGTAATGATCATCATTCACAATGTGATAAGGCAGAATAAACTTATTCT-CTTATTAGGAAAAAT
386 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAAT
* *
371296 GATATGGATGATTTTATTTTGCATGG
451 GATATTGATGATTTTCTTTTGCATGG
* *
371322 AAATCTTTTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAACA
1 AAATC----TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCA
* * * * * * **
371387 TTGATTCTCATACCAGTCTCCACTTTTTTTGAGATTGGGAACCAAGAATACATT-CTTTTTTTAG
62 TTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAG
* * * * *
371451 GATACGTGACATTGACGATTTGATGTCTCAAGAAAAGCTTTTCTTCCAACCGTTTTCGATAGAAT
127 GATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAAT
* * *
371516 CAAAGTTTATCTCTTGAATAACACAAACATGAGTAGTCACAATAATCCTCATTCTTTTTTGGATT
192 CAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATT
* * *
371581 AGGCACCATAAACTTAGTCATCTCATAAGGATACAAGATATTGATGGTTTGGTTTTGTAAGAAA-
257 AGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAG
* * * * * * *
371645 GCTTCCTTCCTACCAATTTTGGTAAAGTCTATGTTCATGCCTCAACTGTGCCAAATATGGATTCT
322 GCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCT
* * ** * *
371710 AATAATGATCTTCATTCACGTTGTGATTCCGCAGTATAAACTTATTCTCCTCCTTAGGATAAATG
387 AGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATG
*
371775 ATATGGATGATTTTCTTTTGCATGG
452 ATATTGATGATTTTCTTTTGCATGG
* *
371800 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGGCAAGCATTAA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * **
371865 TTCTCATAACAATCTCCACTCTTTTCGAGATTGAGAACCAAAAAACACATTCCTTTTTTTAGGAT
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACC-AAAAACACATTCCTTTCATTAGGAT
*
371930 ACGCGACATTGACGCTCTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAA
130 ACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAA
* * * * * *
371995 AGTTTGTCTCTTAAATAAGACAAACATGAGTAGCCAAACTAACCCTCGTTCTTTTTGGGGA-TAG
195 AGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTT-TGGATTAG
* * *
372059 GCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTAGTTTTGTAAGAAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* *
372124 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGGCAAACATGGATTCTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * * *
372189 TAGTGGTCTTCATTCA-TTTCGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGA
389 TAATGATCTTCATTCACTTT-GTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGA
*
372253 TGTTGATGATTTTCTTTTGCATGG
453 TATTGATGATTTTCTTTTGCATGG
* *
372277 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * * *
372342 TTCTCGTAACGGTCACCACTCTTTTTGAGATTGGGAACCGAAAACATATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * * *
372407 CGCAACATTGAC-CATTTGATGTCGTAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAA
131 CGCGACATTGACGC-TTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAA
* * *
372471 AGTTTGTCCCTTAAATAAGACAAATATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
195 AGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * *
372536 CACCGTAAACTTAGTCTTCTCATAAGGATACAAGATATTGATGGTTTGGTTTTGTAAGAAA-GCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * * *
372600 TCCTTCCCACCAATTTTGATAAAGTCTAAGTTCGGGCCTCAATTGTGACAAACAAGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * * * *
372665 AGTGGTCTTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATATATGATG
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATA
372730 TTGATGATTTTCTTTTGCATGG
455 TTGATGATTTTCTTTTGCATGG
* *
372752 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * *
372817 TTCTCGTAACGGTCACCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * *
372882 CGCAACATTGAC-CATTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAA
131 CGCGACATTGACGC-TTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAA
* * * *
372946 AGTTTGTCCCTTAAATAAGACAAATATGAGTAGTCACACTAATCCTCATTGTTTTTTGGATTAGG
195 AGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * * * *
373011 CACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGATAGTTTGGTTTCATAAGAAAGGCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
*
373076 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAACATGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * * * *
373141 AGTGGTATTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGAT-AATGATG
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATA
373205 TTGATGATTTTCTTTTGCATGG
455 TTGATGATTTTCTTTTGCATGG
* * * *
373227 AAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAATTTAATTCCTTAAATAAAGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * * *
373292 TTCTCGAAACGGTCTCCACTTTTTTCGAGATTGGGAACCGAAAACACATTTCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * * * *
373357 TGCAACATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
*
373422 GTTTATCTCTTAAATAAGACAAATATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
196 GTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
* * * *
373487 ACCATAAACTTAGTCTTCTCATAAGGATGCACAATATTGATGGTTTGGCTTCGTAAGGAAGGCTT
261 ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTT
* * * * * * *
373552 TCTTCCCACCAATTTTGGTAACGTCGATGTCCGTCCCTCAAATGTGACAAACATGGATTGTAGTA
326 TCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTA
* * * * * *
373617 ATGATCTTCATTCACGTTGTGATTGGGAACTATGAACATATTCTCCTCATTATGATAAATGATAT
391 ATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATAT
* * **
373682 TGAAGATTTTCTTTTGCGTAA
456 TGATGATTTTCTTTTGCATGG
*** * * *
373703 AAATCTTTTCTTTGCCCTATTTTCCACGACATC-AA-TATCCTTCCCCTAAATAAGGCAAGCATT
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATT-CCTTAAATAAGGCAAGCATT
** * * * *
373766 GATTCTCGTAATGGTCTCCACT-TTTGGCGAGATTGGGAATCGATAACACATTCCTTTCATTAGG
64 GATTCTCGTAACAGTCTCCACTCTTT-TCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGG
* * * *
373830 ATACGCGGCATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATC
128 ATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATC
* * * *
373895 AAAGTTTTTCTCTTAAATAAGACAAACGTGAATAGTCATACTAATCCTCATTCTTTTTTGGATTA
193 AAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTA
* * *
373960 GGCACCATAAAATTAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA-G
258 GGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGG
* * * * * * *
374024 CTTCCTTCCCACCAATTTTGGTAAAGTCTAACTTCATGCCTCAAATGTGCCGAACATGCATTCTA
323 CTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTA
* * * * *
374089 GTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGA
388 GTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGA
* *
374154 TATGGATGATTTTCTTTTGGATGG
453 TATTGATGATTTTCTTTTGCATGG
* * * * * *
374178 AAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCTTAAATAAGGTAAGCATAGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* *
374243 TTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * * * *
374308 CGCAACATTGACGCTTTGATGTCACAGGAAAAGCATCTCTTCCAATCGTTTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
** * *
374373 GTTTGCCTCTTAAA-ATAGACAAACATGAGTAGTCACACTAGTCCTCATTCGTTTTTGGATTAGG
196 GTTTATCTCTTAAATA-AGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * *
374437 CACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTTGGTTTCATAAGAAAGGCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * * * *
374502 TTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGTGACAGACATGGATTGTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * ** *
374567 AATGATCGTCATTCACATTGTGCTTAGGCACTACGAA-TATATTCTCCTCATTAGGATAAATCAT
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACT-TATTCTCCTCATTAGGATAAATGAT
*
374631 ATTGATGATTTT-TTTTGCATGA
454 ATTGATGATTTTCTTTTGCATGG
* * * * * * *
374653 AAATCTTTACTTTGCCCTATTTTTCATGACACCAATA-TTC-TTCCCTTAAGTAAGGCAAGCATT
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTTCATT-CCTTAAATAAGGCAAGCATT
* *
374716 GATTCTCGTAACAGTCTTCCACT-TTTTCTG-GATTGGGAACCAAAAAGACATTCCTTTCATTAA
64 GATTCTCGTAACAGTC-TCCACTCTTTTC-GAGATTGGGAACCAAAAACACATTCCTTTCATTAG
*** * ** * * *
374779 GATATATGATATTGACAATTTAATGTCGCAAAAAAAGCATTTCTAT-CAACCGTTTTTGATAGTA
127 GATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACCGTTTTTGATAGAA
* * * * * *
374843 CCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTTATACTAATCCTCATTCTTTTTTGGAT
191 TCAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGAT
* *
374908 TAGGCACCATAAACTTAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA
256 TAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAA
* * * * *
374973 -GCTTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGCCGAACATGCATTC
321 GGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * * * *
375037 TAGCAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGT
386 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAAT
*
375102 GATATGGATGATTTTCTTTTGCATGG
451 GATATTGATGATTTTCTTTTGCATGG
** * * *
375128 AAATCTTTTCTTTGCTATTTTTTCCTTAAAATCAAAGTTCTTTCCTTAAATAAGGCAAGCATAGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * *
375193 TTCTCGTAACAGTTTCCACTCTTTTCAAGATTGGGAACGAAAAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * *
375258 CGCAACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAACCGTTTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* *
375318 GTTTGTCTCTTAAA-AGAGACAAACATGAGTAGTCACACTAATCCTCATTCGTTTTTGGATTAGG
196 GTTTATCTCTTAAATA-AGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * * * ***
375382 CACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGATTTGGTTTCATAAGAAAATTT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
** *
375447 TTCTTCCCACCAATTTTATTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAAATGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * *
375512 AATGGTCTTCATTCACTTTGTGATTAGGCGCTATAAACATATTCTTCTTATTAGGATAAATGATA
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATA
** *
375577 TTGATGATTTTCTTTCCCATGA
455 TTGATGATTTTCTTTTGCATGG
* * *
375599 AAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * ** *
375664 TTCTTGTAACAGTCTCTACTCTTTTCGAGATTGGGAATGAAAAACACATTCCTTTCATTATGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
** *
375729 CAAGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTGCTTCCAACTGTTTTTGATAGAATCAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTT-CTTCCAACCGTTTTTGATAGAATCAA
* * * * *
375794 AGTTTATCTCTTAAATAAGGCAAACAAGAGTACTCACACTAATACTCCTTCTTTTTTGGATTAGG
195 AGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* **
375859 CACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTGCGAAAGGCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* *
375924 TTCTTCCCACCAATTATGGTAAAGTCTCAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * * *
375989 AGTGGTCTTCATTCA-TTTGTGATTTGGCATTATAATCGTATTCGT-CTCATTAGGATAAATGAT
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTC-TCCTCATTAGGATAAATGAT
376052 ATTGATGATTTTCTTTTGCATGG
454 ATTGATGATTTTCTTTTGCATGG
* * * * * * *
376075 AAATCTTTTCTTTGCCCCATTTTCCTTAAAAACAAATTTAATTCCGTAAATGAGGCAAGCACTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * * *
376140 TTCTCGTAACGGTCTCCACTCTTTTTGAGATTGGGAACCGAAAGCACATTCCTTTCGTTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* *
376205 CGCAACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
*
376270 GTTTATCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
196 GTTTATCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
*
376334 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGG--T--TTTCGTATGAAAGGCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * *
376395 TTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACATGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * * * *
376460 AACTG-TCTTCATTCATTTTGTGATTAGGCTCTACAAACGTATTCTTCTCTTTAGAATAAATGAT
390 AA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
* * *
376524 ATTTATGGTATTT-TTTTGCGTGG
454 ATTGATGAT-TTTCTTTTGCATGG
* **
376547 --A------C-TTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCCTTAAATAAGGCAAGCATTG
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* * *
376602 ATTCTCGTAACAGTCTCCACACTTTTCGAGATTGGGAACCGAAAACACATTCCTTTCGTTAGGAT
65 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* * * * *
376667 ACGCTACATTGATGCTATGATGGT-GCAAGGAAAGCTTTTCTTCCAACCGTTTTTGATAGAATCA
130 ACGCGACATTGACGCTTTGAT-GTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCA
* * * *
376731 AAGTTTATCTCTTAAAAAAGACAAACATAAGTAGTCACACTAATTCTCATTCTTTTCTGGATTAG
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * *
376796 GCACCATAAACTTAGTCTTCTCATAAGGATACACAATATTGATGTTTTGGTTTCGTAAGCAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* *
376861 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACATGGATTGTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * ** * * *
376926 TAATGATCTTCATTCACTTTATGAATAGGCACTATAAACAAAGTCTCCTCATCAGTATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
376991 ATTGATGATTTTCTTTTGCATGG
454 ATTGATGATTTTCTTTTGCATGG
*
377014 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCA-TCTCTTAAATAAGCCAAGCATTG
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTC-CTTAAATAAGGCAAGCATTG
* * * * *
377077 ATTCTTGCAACAGTCTCCACTCTTTTCAACATTGGGAACCAAAAACACATCCCTTTCATTAGGAT
65 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
*** * * * * * *
377142 ATATGACATGGACGCTTTGGTGTCGTAAAAAAAGCATTTTCTTTCAACCGTTTTTGATAGAATTA
130 ACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCA-TTTCTTCCAACCGTTTTTGATAGAATCA
* * * * * *
377207 AATTTTATCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTTAGGATTAA
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * * *
377272 GCACCATAAACTTAGACTTCTCATAAGGATACGCGATATTGAAGCTTTGGTTTCGTAAGAAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* * * * *
377337 TTTCTTCCCACCAATTTTGGTAACGTCTATGTCCGTGCCTCAAATGTGACAAACATGGATTGTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * * ** * *
377402 TAATGATCTTCATTCACGTTGTGATTGGGAACTACGAACATATTCTCCTCATTATGATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
* * * *
377467 ATTGAAGATTTTTTTTTGCGTGA
454 ATTGATGATTTTCTTTTGCATGG
* * *
377490 AAATCTTTTCTTTGCCCTATTTTCCATGACATC-AA-TATCATTCCCTTAAATAAGGCAAGCATT
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATT-CCTTAAATAAGGCAAGCATT
* * * * * * *
377553 GATTCTCGTAATAGTCTTCTCTCTTTTCAAGATTAGGAACCAAAAACATAGTT-CTTTCATTAAG
64 GATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGG
*** * *
377617 ATATATGACACTGACGCTTTTG-TGTCGCAAAAAAAAAAGCATTTCTAT-CAACCGTTTTTGATA
128 ATACGCGACATTGACGC-TTTGATGTCGC---AAGAAAAGCATTTCT-TCCAACCGTTTTTGATA
* * * * * *
377680 GTACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCTCATTCTTTTTTG
188 GAATCAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTG
* * *
377745 GATTAGGCACCATAAACTTAGTCTTCTCATAATGATATACGATATTGATGCG-TTGGTTTTGTAA
253 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTTCGTAA
* * * **
377809 GAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTTGTGCCTCAAACGTGACAAACATGG
317 GAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
* * * ** * ** *
377874 ACTCTAGTAATGATCATCATTTACAATGTGATAAGGCAGAATAAACTTATTCT-CTTATTAGGAT
382 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGAT
*
377938 AAATGATATGGATGATTTTCTTTTGCATGG
447 AAATGATATTGATGATTTTCTTTTGCATGG
* * *
377968 AAATCTTTTTTTTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGGCAAACATT
1 AAATC--TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATT
* * * * * * * **
378033 GATTCTCATACCAGTCTCCACTTTTTTTGAGATTGGGAACCAAGAATACATT-ATTTTTTTAGGA
64 GATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
* * * * * * * * **
378097 TACGTGACACTGACGATTTGATGTCTCAAGAAAAGCTTTTTTTCCAACCATTTTCGGCAGAATCA
129 TACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCA
* *
378162 AAGTTTATCTCTTAAAAAACACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * *
378227 GCACCATAAACTTAGTCATCTCATAAGGATACAAGATATTGATGGTTTGGTTTTGTAAGAAA-GC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* * * * * * * * *
378291 TTCCTTCCTACCAATTTTGGTAAAGTCTATGTTCATGCATCAACTGTGCCAAATATGGATTCTAA
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* ** * *
378356 TAATGATCTTCATTCACGTTGTGATTCCGCAGTATAAACTTATTCTCCTCCTTAGGATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
*
378421 ATGGATGATTTTCTTTTGCATGG
454 ATTGATGATTTTCTTTTGCATGG
* *
378444 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAAATCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * **
378509 TTCTCATAACAATCTCCACTCTTTTCGAGATTGAGAACCAAAAACACATTCCTTTTTTTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* *
378574 CGCGACATTGATGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAAAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* *** *
378639 GTTTATCTCTTAAATAAGACAAATATGAGTAGTCACACTCAAAGTTTATCTCTTAAATAAGACAA
196 GTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACT-AATCCTCAT-TCTT---T-------
* ** *
378704 ATATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT
249 -TTTG-G-A-T-----T-A--GGCA--C-C----------------ATAAACTTAGTCTTCTCAT
* * * * *
378769 AAGGATGCACAATATTGATGGTTTGGCTTCGTAAGGAAGGCTTTCTTCCCACCAATTTTGGTAAC
283 AAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAA
* * * * * *
378834 GTCGATGTCCGTGCCTCAAATGTGACAAACATGGATTGTAGTAATGATCTTCATTCACGTTGTGA
348 GTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGA
* * * * * * * **
378899 TTGGGAACTATGAACATATTCTCCTCATTATGATAAATGATATTGAAGATTTTCTTTTGCGTAA
413 TTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG
* * * * *
378963 AAATCTTTTCTTTGCCCTATTTTCCATGACATC-AA-TATCCTTCCCCTAAATAAGGCAAGCATT
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATT-CCTTAAATAAGGCAAGCATT
** * * * *
379026 GATTCTCGTAATGGTCTCCACT-TTTGGCGAGATTGGGAATCGATAACACATTCCTTTCATTAGG
64 GATTCTCGTAACAGTCTCCACTCTTT-TCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGG
* * * *
379090 ATACGCGGCATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATC
128 ATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATC
* * * *
379155 AAAGTTTTTCTCTTAAATAAGACAAACGTGAATAGTCATACTAATCCTCATTCTTTTTTGGATTA
193 AAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTA
* * *
379220 GGCACCATAAAATTAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA-G
258 GGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGG
* * * * * *
379284 CTTCCTTCCCACCAATTTTGGTAAAGTCTAACTTCGTGCCTCAAATGTGCCGAACATGCATTCTA
323 CTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTA
* * * * *
379349 GTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGA
388 GTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGA
* *
379414 TATGGATGATTTTCTTTTGGATGG
453 TATTGATGATTTTCTTTTGCATGG
* * * * *
379438 AAATCTTTTCTTTACTCTTTTTTCCTTAAAATCAAAGTTCCTTCCTTAAATAAGGCAAGCATAGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* *
379503 TTCTCGTAACAGTTTCCACTCTTTTCGAGATTGGGAACGAAAAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * * * *
379568 CGCAACATTGACGCTTTGATGTCACAGGAAAAGCATCTCTTCCAATCGTTTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* *
379633 GTTT-GCGTCTTAAA-ATAGACAAACATGAGTAGTCACACTAATCCTCATTCGTTTTTGGATTAG
196 GTTTATC-TCTTAAATA-AGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * * *
379696 GCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTTGGTTTCATAAGAAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* * * * * *
379761 TTTCTTCCCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAAATGTGACAGACATGGATTGTGG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * * ** *
379826 TAATGATCGTCATTCACATTGTGCTTAGGCACTACGAA-TATATTCTCCTCATTAGGATAAATCA
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACT-TATTCTCCTCATTAGGATAAATGA
*
379890 TATTGATGATTTT-TTTTGCATGA
453 TATTGATGATTTTCTTTTGCATGG
* * * * * *
379913 AAATCTTTACTTTGCCCTATATTT-CATGACACCAATA-TTC-TTCCCTTAAGTAAGGCAAGCAT
1 AAATCTTTTCTTTGCCCTAT-TTTCCTTAAAATCAA-AGTTCATT-CCTTAAATAAGGCAAGCAT
*
379975 TGATTCTCGTAACAGTCTTCCACT-TTTTCTG-GATTGGGAACCAAAAAGACATTCCTTTCATTA
63 TGATTCTCGTAACAGTC-TCCACTCTTTTC-GAGATTGGGAACCAAAAACACATTCCTTTCATTA
* *** * ** * * *
380038 AGATATATGATATTGACAATTTAATGTCGCAAAAAAAGCATTTCTAT-CAACCGTTTTTGATAGT
126 GGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACCGTTTTTGATAGA
* * * * * *
380102 ACCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTTATACTAATCCTCATTCTTTTTTGGA
190 ATCAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGA
* *
380167 TTAGGCACCATAAACTTAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAA
255 TTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAA
* * * * *
380232 A-GCTTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGCCGAACATGCATT
320 AGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATT
* * * * * * *
380296 CTAGCAATAATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAG
385 CTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAA
*
380361 TGATATGGATGATTTTCTTTTGCATGG
450 TGATATTGATGATTTTCTTTTGCATGG
* * * *
380388 AAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCTTTCCTTAAATAAGGCAAGCATAGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * *
380453 TTCTCGTAACAGTTTCCACTCTTTTCAAGATTGGGAACGAAAAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* *
380518 CGCGACATT---G--TTGATGTCACAAGAAAAGCATCTCTTCCAACCGTTTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* *
380578 GTTTGTCTCTTAAA-AGAGACAAACATGAGTAGTCACACTAATCCTCATTCGTTTTTGGATTAGG
196 GTTTATCTCTTAAATA-AGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * * * ***
380642 CACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGATTTGGTTTCATAAGAAAATTT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
** *
380707 TTCTTCCCACCAATTTTATTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAAATGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * *
380772 AATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTTATTAGGATAAATGATA
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATA
** *
380837 TTGATGATTTTCTTTCCCATGA
455 TTGATGATTTTCTTTTGCATGG
* * *
380859 AAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* ** *
380924 TTC-CTGTAACAGTCTCTACTCTTTTCGAGATTGGGAATGAAAAACACATTCCTTTCATTATGAT
66 TTCTC-GTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
** *
380988 ACAAGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTGCTTCCAACTGTTTTTGATAGAATCA
130 ACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTT-CTTCCAACCGTTTTTGATAGAATCA
* * * * * *
381053 AAGTTTATCTCTTAAATAAGGCAAACAAGAGTACTCACACTAATACTCCTTTTTTTTTGGATTAG
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* ** *
381118 GCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTGCGAAAAGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* *
381183 TTTCTTCCCACCAATTATGGTAAAGTCTCAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * * * * *
381248 TAGTGGTCTTCATTCA-TTTGTGATTTGGCATTATAATCCTATTCGT-CTCATTAGGATAAATGA
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTC-TCCTCATTAGGATAAATGA
381311 TATTGATGATTTTCTTTTGCATGG
453 TATTGATGATTTTCTTTTGCATGG
* * * * * * *
381335 AAATCTTTTCTTTGCCCCATTTTCCTTAAAAGCAAATTTAATTCCGTAAATGAGGCAAGCACTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * *
381400 TTCTCGTAACGGTCTCCACTCTTTTTGAGATTGGGAACCGAAAGCACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* *
381465 CGCAACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
*
381530 GTTTATCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
196 GTTTATCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
*
381594 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTATGAAAGGCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * *
381659 TTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACATGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * * * *
381724 AATTG-TCTTCATTCATTTTGTGATTAGGCTCTACAAACGTATTCTTCTCTTTAGAATAAATGAT
390 AA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
* * *
381788 ATTTATGGTATTT-TTTTGCGTGG
454 ATTGATGAT-TTTCTTTTGCATGG
* **
381811 --A------C-TTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCCTTAAATAAGGCAAGCATTG
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* * *
381866 ATTCTCGTAACAGTCTCCACACTTTTCGAGATTGGGAACCGAAAACACATTCCTTTCGTTAGGAT
65 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* * * * * *
381931 ACGCTACATTGATGCTATGATGGT-GCAAGGAAAGCTTTTCTTCCAACCGTTTTTGATAGAATGA
130 ACGCGACATTGACGCTTTGAT-GTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCA
* * * *
381995 AAGTTTATCTCTTAAAAAAGACAAACATAAGTAGTCACACTAATTCTCATTCTTTTCTGGATTAG
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * *
382060 GCACCATAAACTTAGTCTTCTCATAAGGATACACAATATTGATGTTTTGGTTTCGTAAGCAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* *
382125 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACATGGATTGTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * ** * * *
382190 TAATGATCTTCATTCACTTTATGAATAGGCACTATAAACAAAGTCTCCTCATCAGTATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
382255 ATTGATGATTTTCTTTTGCATGG
454 ATTGATGATTTTCTTTTGCATGG
*
382278 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCA-TCTCTTAAATAAGCCAAGCATTG
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTC-CTTAAATAAGGCAAGCATTG
* * * * *
382341 ATTCTTGCAACAGTCTCCACTCTTTTCAACATTGGGAACCAAAAACACATCCCTTTCATTAGGAT
65 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
*** * * * * * *
382406 ATATGACATGGACGCTTTGGTGTCGTAAAAAAAGCATTTTCTTTCAACCGTTTTTGATAGAATTA
130 ACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCA-TTTCTTCCAACCGTTTTTGATAGAATCA
* * * * * *
382471 AATTTTATCTCTGAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTTAGGATTAA
194 AAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* * * *
382536 GCACCATAAACTTAGACTTCTCATAAGGATACGCGATATTGAAGCTTTGGTTTCGTAAGAAAGGC
259 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* * * * *
382601 TTTCTTCCCACCAATTTTGGTAACGTCTATGTCCGTGCCTCAAATGTGACAAACATGGATTGTAG
324 TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
* * * ** * *
382666 TAATGATCTTCATTCACGTTGTGATTGGGAACTACGAACATATTCTCCTCATTATGATAAATGAT
389 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGAT
* * * *
382731 ATTGAAGATTTTTTTTTTGCGTGA
454 ATTGATGA-TTTTCTTTTGCATGG
* * *
382755 AAATCTTTTCTTTGCCCTATTTTCCATGACATC-AA-TATCATTCCCTTAAATAAGGCAAGCATT
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATT-CCTTAAATAAGGCAAGCATT
* * * * * * *
382818 GATTCTCGTAATAGTCTTCTCTCTTTTCAAGATTAGGAACCAAAAACATAGTT-CTTTCATTAAG
64 GATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGG
*** * *
382882 ATATATGACACTGACGCTTTTG-TGTCGCAAAAAAAAAGAGCATTTCTAT-CAACCGTTTTTGAT
128 ATACGCGACATTGACGC-TTTGATGTCGC---AAGAAA-AGCATTTCT-TCCAACCGTTTTTGAT
* * * * * *
382945 AGTACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCTCATTCTTTTTT
187 AGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTT
* * *
383010 GGATTAGGCACCATAAACTTAGTCTTCTCATAATGATATACGATATTGATGCG-TTGGTTTTGTA
252 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTTCGTA
* * * **
383074 AGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAAACGTGACAAACATG
316 AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
* * * ** * ** *
383139 GACTCTAGTAATGATCATCATTTACAATGTGATAAGGCAGAATAAACTTATTCT-CTTATTAGGA
381 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGA
*
383203 TAAATGATATGGATGATTTTCTTTTGCATGG
446 TAAATGATATTGATGATTTTCTTTTGCATGG
* * * *
383234 AAATCTTTTTTTTTTTGCCCTTTTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGGCAAACAT
1 AAATC---TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCAT
* * * * * * * ** *
383299 TGATTCTCATACCAGTCTCCACTTTTTTTGAGATTGGGAACCAAGAATACATT-ATTTTTTTAGA
63 TGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGG
* * * * * * * * * **
383363 ATACGTGACACTAACGATTTGATGTCTCAAGAAAAGCTTTTTTTCCAACCATTTTCGGCAGAATC
128 ATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATC
* *
383428 AAAGTTTATCTCTTAAAAAACACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTA
193 AAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTA
* * *
383493 GGCACCATAAACTTAGTCATCTCATAAGGATACAAGATATTGATGGTTTGGTTTTGTAAGAAA-G
258 GGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGG
* * * * * * *
383557 CTTCCTTCCTACCAATTTTGGTAAAGTCTATGTTCATGCCTCAACTGTGCCAAATATGGATTCTA
323 CTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTA
* * ** * *
383622 ATAATGATCTTCATTCACGTTGTGATTCCGCAGTATAAACTTATTCTCCTCCTTAGGATAAATGA
388 GTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGA
*
383687 TATGGATGATTTTCTTTTGCATGG
453 TATTGATGATTTTCTTTTGCATGG
* *
383711 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAAATCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * **
383776 TTCTCATAACAATCTCCACTCTTTTCGAGATTGAGAACCAAAAACACATTCCTTTTTTTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
*
383841 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAAAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* *
383906 GTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTATGC
196 GTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
*
383971 ACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTT
261 ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTT
* * *
384036 TCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTATGGCAAACATGGATTCTAGTA
326 TCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTA
* * * * * * * * *
384101 GTGGTCTCCATTCATTTTGTGATTAGTCACTATAAACATATTCTTCTCATCAGGATAAATGATGT
391 ATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATAT
384166 TGATGATTTT-TGTTTGCATGG
456 TGATGATTTTCT-TTTGCATGG
* *
384187 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* * * *
384252 TTCTCGTAACGGTCACCACTCTTTTAGAGATTGGGAACCGAAAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * *
384317 CGCAACATTGAC-CATTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAATCAA
131 CGCGACATTGACGC-TTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAA
* * * ** *
384381 AGTTTGTCCCTTAAATAAGACAAATATGAGTAGTTGCACTAATCCTCATTGTTTTTTGGATTAGG
195 AGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * * * *
384446 CACCGTAAACTTAGTCTTCTCATAAGGATGCATGACATTGATAGTTTGGTTTCATAAGAAAGGCT
260 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * *
384511 TTCTTCCCACCAATTTTGGTAAAGTCAAAGTTCGGGCCTCAATTGTGACAAACAAGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * * * *
384576 AGTGGTCTTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATATATGATG
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATA
384641 TTGATGATTTTCTTTTGCATGG
455 TTGATGATTTTCTTTTGCATGG
* *
384663 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCATTGA
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
* ** * * * *
384728 TTCTCATAATGGTCTCCACTTTTTTCGAGATTGGGAATCGATAACACATTCCTTTCATTAGGATA
66 TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * * ** *
384793 CGCGGCATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGAATGTGATAGAATCAAA
131 CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
* * * * *
384858 GTTTTTCTCTTAAATAAGACAGATATGAGTAGTCGCACTAATCCTCATTCTTTTTTGGATTGGGC
196 GTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
* *
384923 ACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGGTTTCGTAAG-AAGATCT
261 ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAG-GCT
* * *
384987 TTCTTCCCACCAATTTTGGTGAAGTCTAAGTTTGGGCCTCAATTGTGACAAACATGGATTCTAGT
325 TTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGT
* * * * * *
385052 AATGGTCTTCATTCATTTTGTGATTAGGCACTGTAAACGTATTCTTCTCATTCGGATAAATGATA
390 AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATA
* *
385117 TTGATGGTATTCTTTTGCATGG
455 TTGATGATTTTCTTTTGCATGG
** * * * ** *
385139 AAATCAATTCTTTACCCGATTTTCC-TAAAATCCAATGTTCAGCCCTTAAATAAGGCAAGTATTG
1 AAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* *
385203 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGAGAACCGAAAACACATTCCTTTC-TTAAGGA
65 ATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATT-AGGA
* * * * *
385267 TATGTGACATTGACTCTTTGATGCCGCAAGAAAAACATT
129 TACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATT
385306 GGATTAGGCA
Statistics
Matches: 15442, Mismatches: 2033, Indels: 585
0.86 0.11 0.03
Matches are distributed among these distances:
462 7 0.00
463 257 0.02
464 369 0.02
465 4 0.00
466 24 0.00
467 560 0.04
468 6 0.00
469 7 0.00
470 467 0.03
471 1139 0.07
472 181 0.01
473 24 0.00
474 715 0.05
475 4065 0.26
476 4532 0.29
477 1457 0.09
478 426 0.03
479 307 0.02
480 119 0.01
481 269 0.02
482 85 0.01
483 7 0.00
484 1 0.00
488 3 0.00
489 1 0.00
490 1 0.00
491 1 0.00
493 1 0.00
495 2 0.00
496 1 0.00
497 2 0.00
498 1 0.00
499 2 0.00
501 1 0.00
503 1 0.00
504 1 0.00
505 1 0.00
506 3 0.00
514 1 0.00
517 5 0.00
518 62 0.00
519 324 0.02
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGA
TTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
CGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAA
GTTTATCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTT
TCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTA
ATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATAT
TGATGATTTTCTTTTGCATGG
Found at i:378695 original size:43 final size:43
Alignment explanation
Indices: 378634--378720 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
378624 TTTGATAAAA
378634 TCAAAGTTTATCTCTTAAATAAGACAAATATGAGTAGTCACAC
1 TCAAAGTTTATCTCTTAAATAAGACAAATATGAGTAGTCACAC
378677 TCAAAGTTTATCTCTTAAATAAGACAAATATGAGTAGTCACAC
1 TCAAAGTTTATCTCTTAAATAAGACAAATATGAGTAGTCACAC
378720 T
1 T
378721 AATCCTCATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.31
Consensus pattern (43 bp):
TCAAAGTTTATCTCTTAAATAAGACAAATATGAGTAGTCACAC
Found at i:386456 original size:476 final size:474
Alignment explanation
Indices: 385304--390585 Score: 6823
Period size: 476 Copynumber: 11.1 Consensus size: 474
385294 AAGAAAAACA
*
385304 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACTATATTGATGGTTTGGTTTCGT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * *
385369 CAA-AAAGGCTTTCTTCACACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGATAAACG
66 -AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
* * * *
385433 TGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGCATTGTAAACGTATTCTTCTCATTAG
130 TGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAG
* * * *
385498 GATAAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCATATTTTCCTTAAAAT
195 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
385563 -AAATTCATCCCTTAAATAAGGCAAGCATTGATTCCCATAACAGTCTCCACTCTTTTCAACATTG
260 CAAATTCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTC-AGATTG
* * * * * * * * * *
385627 GGAACCAAAAATATATTCCTTTCGTTAGGATATAT-ATATTGACACTTTGGTGTTGTAAAAAAAG
324 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAG
* ** * * *
385691 TATTTCTTTTAACCG-ATTTGACA-ATATCAAAGTTTGTCTCTAAAATAAGAC---C----A-A-
389 CATTTCTTCCAACCGTTTTTGATAGA-ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
*
385745 -CATACTAATCCTCATTCTTTT
453 TCACACTAATCCTCATTCTTTT
* * * * *
385766 TTAGATTAGGCACCATAAACTTAGTTTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTCAT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
385831 AAGAATGGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAAATGTGACAGACAT
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* * * * ** *
385896 GGATTGTAGTAATGATCTTCATTCACATTGTGCTTAGGCACTACGAACATATTCTCCTCATTAGG
131 GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
* * * * * * *
385961 ATAAAAGATATTGATGATTTTTTTTTTGCATGAAAATATTTTCTTTGCCCTATTTTTCATGACAT
196 ATAAATGATATTGATGA-TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
386026 CAATATTCTTCCCATAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACT-TTTTCAGGAT
260 CAA-ATTCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCA-GAT
* * * * * * *
386090 TGGGAACCAAAAAGACATTCCTTTCATTAAGATATATGATATTGATGCTTTGGTGTCGCAAAAAA
322 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
* *
386155 AGCATTTCTAT-CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
387 AGCATTTCT-TCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
386219 AGTCATACTAATCCTCATTCTTTT
451 AGTCACACTAATCCTCATTCTTTT
* *
386243 TTGGATTAGGCACCATAAACTTAGTCTTTTCATAAGGATACACGATATTGATGTTTTGGTTTCGT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
386308 AGGAAA-GCTTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTG-CTGAACA
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGAC-AAACA
* * * * * * * *
386371 TGCATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAG
130 TGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAG
* * * * *
386436 GATAAGTGATATGGATGATTTTCTTTTGCATGAAAATATTTTCTTTGCTCTTTTTTCCTTAAAAT
195 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
386501 CAAAGTTCCGT-CCTTAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTCAAGAT
260 CAAA-TT-CTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTC-AGAT
* * **
386565 TGGGAACGAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTACAAGAAA
322 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
* * *
386630 AGCATCTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTA
387 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
*
386695 GTCACACTAATCCTCATTCGTTT
452 GTCACACTAATCCTCATTCTTTT
* * * *
386718 TTGGATTAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTTGGTTTCAT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* *
386783 AAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAAAT
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
386848 GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
131 GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
* *
386913 ATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATC
196 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
386978 AAATT-TAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTC-CCTACTCTTTTTGAGAT
261 AAATTCT--TCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC-ACTC-TTTTCAGAT
** * *
387041 TGGGAATGACAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAA
322 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
* * *
387106 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACACG-ATA
387 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-
*
387170 ACTCACACTAATCCTCATTCTTTT
451 AGTCACACTAATCCTCATTCTTTT
* * * *
387194 CTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTAACGGTTTGGTTTCAT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * *
387259 AACAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAAAT
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
*
387324 GGATTCTAGTAATGGTCTTCATTCACTTTTTGATTAGGCACTATAAACATATTCTTCTCATTAGG
131 GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
* *
387389 ATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATC
196 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
387454 AAATT-TAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTC-CCTACTCTTTTTGAGAT
261 AAATTCT--TCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC-ACTC-TTTTCAGAT
** * *
387517 TGGGAATGAAAAACACATTCCTTTCGTTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAA
322 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
* * *
387582 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACACGAGA-
387 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA-AT
* *
387646 ACTCACACTAATCCTCATTCTGTT
451 AGTCACACTAATCCTCATTCTTTT
* * * *
387670 CTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTAACGGTTTGGTTTCAT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * *
387735 AAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTAACAAAAAT
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* *
387800 GGATTCTAGTAATGGTCTTCATTCACTTTTTGATTAGGAACTATAAACATATTCTTCTCATTAGG
131 GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
* *
387865 ATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATC
196 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
387930 AAATT-TAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTC-CCTACTCTTTTTGAGAT
261 AAATTCT--TCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC-ACTC-TTTTCAGAT
** *
387993 TGGGAATGAAAAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAA
322 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
* * *
388058 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACATGAGTA
387 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* *
388123 CTCACACTAATCCTCATTCTGTT
452 GTCACACTAATCCTCATTCTTTT
* * * * *
388146 CTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACAATATTAACGGTTTGGTTTCAT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
388211 AAGAAAGGCTTTCTTCCTACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTAACAAAAAT
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
*
388276 GGATTCTAGTAATGGTCTTCATTCACTTTTTGATTAGGCACTATAAACATATTCTTCTCATTAGG
131 GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
** *
388341 ATAAATGATATTGATGATTTTCTTTCACATGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATC
196 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
388406 AAATT-TAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAATAGTC-CCTACTCTTTTTGAGAT
261 AAATTCT--TCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC-ACTC-TTTTCAGAT
**
388469 TGGGAATGAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
322 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
* * *
388534 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACATGAGTA
387 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
*
388599 CTCACACTAATCCTCATTCTTTT
452 GTCACACTAATCCTCATTCTTTT
*
388622 CTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * *
388687 ACA-AAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTATGACAAACA
66 A-AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
* * * * * * *
388751 TAGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCATTATAATCGTATTCTTTTCATTAG
130 TGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAG
* * * * *
388816 GATAAATGAAATTGATGATTTTCTTTTGCTTGGAAATTTTTTCTTTGCCCTATTTTCCTTAAAAA
195 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
** * * * * * *
388881 CAAATT-TAATTTCGTAAATGAGGCAAGCACTGATTCTCATAACGGTCTCCACTCTTTTTGAGAT
260 CAAATTCT--TCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTC-TTTTCAGAT
* * * * ** * * *
388945 TAGGAACCGAAAGCACGTTCCTTTCATTAGGATACACAACAATGACCCTTTGATGTCACAAGAAA
322 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAA
** * *
389010 AGCATTTCTTCCAACCGTTTTTTGATAG-ATCAAAGTTTGTCTCTTAAATGGGGCAGAA-ATGAG
387 AGCATTTCTTCCAACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAA
389073 TAGTCACACTAATCCTCATTCTTTT
450 TAGTCACACTAATCCTCATTCTTTT
389098 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
389163 AAGAAAGGCTTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCATACCTCAATTGTGACAAACAT
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* * * * * *
389228 GGATTCTAGTAACT-ATCTTCAATCATTTTGTGATTAGGCACTACAAACGTATTCTTCTTATTAG
131 GGATTCTAGTAA-TGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAG
* * * * *
389292 AATAAATGATATTGATGGTATTCTTTTGCATG--GA------C-TTGCCCTATTTTCC-TAAACT
195 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
389347 CCAA-TGTTCAGCCTTTAAATAAGGCAAGCATTAATTCTCGTTATAGTCTCCACTCTTTTCGAGA
260 CAAATTCTTC--CC-TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTC-AGA
* * ** * * * * *
389411 TTGGGAACCGAAAACACATTCCTTTCTTTAGGATACGCGACATTGGCACTGTGATGGCACAA-AA
321 TTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAA
* * * *
389475 AAGCTTTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACTTGAGT
386 AAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
389540 AGTCACACTAATTCTCATTCTTTT
451 AGTCACACTAATCCTCATTCTTTT
* * *
389564 ATGGATTAGGCACCATAAACTTAGTCTTCTTATAAGGATACACGACATTGATGGTTTGGTTTCGT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
389629 AAGAAAAGCTTTCTTCCCACCAATTTGGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACGT
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* * * * * * *
389694 GGATTGTAGTAACGATCTTCATTCACTTTGTGATTAAGCACTATAAACAAAGTCTCCTCATTAGG
131 GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
* *
389759 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATC
196 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
389824 AAATTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCACTCTTTTCAACATTAG
261 AAATTCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTC-AGATTGG
* * * * * * *
389889 GAACCAAAAACACATTCCTTTCATTAGTACATATGACATTGATGCTTTGGTGTCGTAAAAAAAGC
325 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGC
* * *
389954 GTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTC
390 ATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* *
390019 ATAATAATCCTCATTCTTTT
455 ACACTAATCCTCATTCTTTT
* * * * * *
390039 TAGGATTAGGCACCATAAACCTAGTCTTCTCATAAGGATAGACAATATTGAAGCTTTGGTTTCGT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* *
390104 AAGAAAGGCTTTCTTCCCACCAA-TTTGGTAAAGTCTATGTTCGTGCCTCGAA-TATGACAAACA
66 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTC-AATTGTGACAAACA
* * * * * * * *
390167 TGGATTGTAGTAATGATCTTTATTCACGTTGTGATTGGGCACTATGAACATATTCTCCTCATTAT
130 TGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAG
* * * * * * *
390232 GATAAATGATATTGATGATTTACTTTTACATGGAAATTTTTTCTTTGCCCTATTTTACCATGACA
195 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT-CCTTAAAA
* *
390297 TTAATATTCTTCCTTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTTCC-CTCTTTTCAAGA
259 TCAA-ATTCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTC-AGA
* * * * * * *
390361 TTGGGAACCAAAAACATATTCCTTTCATTAAGATATATGACATTGATGCTTTGGTGTCACAAAAA
321 TTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAA
* *
390426 AAGCATTTCTAT-CAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
386 AAGCATTTCT-TCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* *
390490 TAGTCATACTAATCTTCATTCTTTT
450 TAGTCACACTAATCCTCATTCTTTT
* * * **
390515 TTGGATTAGGCACCATACACTTAGTCTTCTCATAATGATACACGATATTGATGCTTTGGTTTTAT
1 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
390580 AAGAAA
66 AAGAAA
390586 TGTGACAAAC
Statistics
Matches: 4352, Mismatches: 400, Indels: 122
0.89 0.08 0.03
Matches are distributed among these distances:
461 2 0.00
462 183 0.04
463 38 0.01
464 4 0.00
465 92 0.02
466 325 0.07
467 132 0.03
468 2 0.00
470 1 0.00
474 241 0.06
475 476 0.11
476 2743 0.63
477 112 0.03
478 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (474 bp):
TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
GGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAATTCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAGATTGGG
AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCA
TTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
CACTAATCCTCATTCTTTT
Found at i:387637 original size:159 final size:158
Alignment explanation
Indices: 386513--388593 Score: 786
Period size: 159 Copynumber: 13.1 Consensus size: 158
386503 AAGTTCCGTC
* * * ** * *
386513 CTTAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCC-ACTCTTTTCAAGATTGGGAACGAAAA
1 CTTAAATAAGGCAAACATTGATTCTTGTAACAG-TCCCTACTCTTTT-TGGATTGGGAATGATAA
* ** * * *
386577 ACACATTCCTT-TCATTAGGATACGTGACATTGACGCTTTGATGTT-ACAAGAAAAGCATCTCTT
64 ACATATT-CTTCTCATTAGGATACACGATATTGACGCTTTGAT-TTCGCAAGAAAAGCATTTCTT
* *
386640 CCAACCGTTTTTGATAGAATCAAAGTTTGTCT
127 CCAACCGTTTTTGTTAGAATCAAAGTTTATCT
* * * * * * * * **
386672 CTTAAAAAAGACAAACA-TGA--GTAGTCACACTAAT-CCTCATTCGTTTTTGGATTAGGCACCA
1 CTTAAATAAGGCAAACATTGATTCTTGT-A-AC-AGTCCCT-ACTC-TTTTTGGATTGGGAATGA
* * * * * * * ** *
386733 TAAACTTAGTCTTCACATAAGGATACACGATATTAACGGTTTGGTTTCATAAGAAAGGC-TTTCT
61 TAAACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCT
* ** * **
386797 TCCCACCAATTTTGTTA-AAGTCTAAGTTCGTGC-
126 TCCAACCGTTTTTGTTAGAA-TCAAAGTTTAT-CT
* * ** * * * * ** * * ** * *
386830 CTCAATTGTGACAAAAATGGATTCTAGTAATGGT-CTTCATTCACTTTGTGATTAGGCACT-ATA
1 CTTAAATAAGGCAAACATTGATTCTTGTAACAGTCCCT-ACTCTTTTTG-GATT-GGGAATGATA
* * * * ** * * *
386893 AACATATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTT
63 AACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTC-TT
** *
386958 GCCCAA---TTTTCCTTAAAATCAAA-TTTAAT-T
127 --CCAACCGTTTTTGTTAGAATCAAAGTTT-ATCT
* *
386988 CCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCCCTACTCTTTTTGAGATTGGGAATGACAA
1 -CTTAAATAAGGCAAACATTGATTCTTGTAACAGTCCCTACTCTTTTTG-GATTGGGAATGATAA
* * *
387053 ACACATTCCTT-TCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTC
64 ACATATT-CTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCTTC
*
387117 CAACCGTTTTTGATAGAATCAAAGTTTATCT
128 CAACCGTTTTTGTTAGAATCAAAGTTTATCT
* * * * * * * **
387148 CTTAAATAAGGCAAACA-CGATAAC-T-CACACTAAT-CCTCATTCTTTTCTGGATTAGGCACCA
1 CTTAAATAAGGCAAACATTGAT-TCTTGTA-AC-AGTCCCT-ACTCTTTT-TGGATTGGGAATGA
* * * * * * ** * *
387209 TAAACTTAGTCTTCTCATAAGGATACACGATATTAACGGTTTGGTTTCATAACAAAGGC-TTTCT
61 TAAACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCT
* ** * **
387273 TCCCACCAATTTTGTTA-AAGTCTAAGTTCGTGC-
126 TCCAACCGTTTTTGTTAGAA-TCAAAGTTTAT-CT
* * ** * * * * ** * * * * *
387306 CTCAATTGTGACAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTTT-GATTAGGCACT-ATA
1 CTTAAATAAGGCAAACATTGATTCTTGTAACAGTC--CCTACTCTTTTTGGATT-GGGAATGATA
* * * * ** * * *
387369 AACATATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTT
63 AACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTC-TT
** *
387434 GCCCAA---TTTTCCTTAAAATCAAA-TTTAAT-T
127 --CCAACCGTTTTTGTTAGAATCAAAGTTT-ATCT
* *
387464 CCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCCCTACTCTTTTTGAGATTGGGAATGAAAA
1 -CTTAAATAAGGCAAACATTGATTCTTGTAACAGTCCCTACTCTTTTTG-GATTGGGAATGATAA
* * * *
387529 ACACATTCCTT-TCGTTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTC
64 ACATATT-CTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCTTC
*
387593 CAACCGTTTTTGATAGAATCAAAGTTTATCT
128 CAACCGTTTTTGTTAGAATCAAAGTTTATCT
* ** * * * * * * **
387624 CTTAAATAAGGCAAACA-CGAGAAC-T-CACACTAAT-CCTCATTCTGTTCTGGATTAGGCACCA
1 CTTAAATAAGGCAAACATTGA-TTCTTGTA-AC-AGTCCCT-ACTCT-TTTTGGATTGGGAATGA
* * * * * * ** *
387685 TAAACTTAGTCTTCTCATAAGGATACACGATATTAACGGTTTGGTTTCATAAGAAAGGC-TTTCT
61 TAAACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCT
* ** * **
387749 TCCCACCAATTTTGTTA-AAGTCTAAGTTCGTGC-
126 TCCAACCGTTTTTGTTAGAA-TCAAAGTTTAT-CT
* * * * * ** * * * *
387782 CTCAATTGTAA--CAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTTT-GATTAGGAACT-A
1 CTTAA--ATAAGGCAAACATTGATTCTTGTAACAGTC--CCTACTCTTTTTGGATTGGGAA-TGA
* * * * ** * * *
387843 TAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCT
61 TAAACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTC-
** *
387908 TTGCCCAA---TTTTCCTTAAAATCAAA-TTTAAT-T
125 TT--CCAACCGTTTTTGTTAGAATCAAAGTTT-ATCT
* *
387940 CCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCCCTACTCTTTTTGAGATTGGGAATGAAAA
1 -CTTAAATAAGGCAAACATTGATTCTTGTAACAGTCCCTACTCTTTTTG-GATTGGGAATGATAA
* * *
388005 ACACATTCCTT-TCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTC
64 ACATATT-CTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCTTC
*
388069 CAACCGTTTTTGATAGAATCAAAGTTTATCT
128 CAACCGTTTTTGTTAGAATCAAAGTTTATCT
* * * * * * * **
388100 CTTAAATAAGGCAAACA-TGAGTAC-T-CACACTAAT-CCTCATTCTGTTCTGGATTAGGCACCA
1 CTTAAATAAGGCAAACATTGA-TTCTTGTA-AC-AGTCCCT-ACTCT-TTTTGGATTGGGAATGA
* * * * * * * ** *
388161 TAAACTTAGTCTTCTCATAAGGATACACAATATTAACGGTTTGGTTTCATAAGAAAGGC-TTTCT
61 TAAACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCT
* ** * **
388225 TCCTACCAATTTTGTTA-AAGTCTAAGTTCGTGC-
126 TCCAACCGTTTTTGTTAGAA-TCAAAGTTTAT-CT
* * * * * ** * * * * *
388258 CTCAATTGTAA--CAAAAATGGATTCTAGTAATGGTCTTCATTCACTTTTT-GATTAGGCACT-A
1 CTTAA--ATAAGGCAAACATTGATTCTTGTAACAGTC--CCTACTCTTTTTGGATT-GGGAATGA
* * * * ** * * * *
388319 TAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTCACATGAAAATCTTTTCT
61 TAAACATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTC-
** *
388384 TTGCCCAA---TTTTCCTTAAAATCAAA-TTTAAT-T
125 TT--CCAACCGTTTTTGTTAGAATCAAAGTTT-ATCT
* * *
388416 CCTTAAATAAGGCAAGCATTGATTCTTGTAATAGTCCCTACTCTTTTTGAGATTGGGAATGAAAA
1 -CTTAAATAAGGCAAACATTGATTCTTGTAACAGTCCCTACTCTTTTTG-GATTGGGAATGATAA
* * * *
388481 ACACATTCCTT-TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTC
64 ACATATT-CTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCTTC
*
388545 CAACCGTTTTTGATAGAATCAAAGTTTATCT
128 CAACCGTTTTTGTTAGAATCAAAGTTTATCT
388576 CTTAAATAAGGCAAACAT
1 CTTAAATAAGGCAAACAT
388594 GAGTACTCAC
Statistics
Matches: 1361, Mismatches: 426, Indels: 270
0.66 0.21 0.13
Matches are distributed among these distances:
156 19 0.01
157 51 0.04
158 431 0.32
159 759 0.56
160 79 0.06
161 10 0.01
162 12 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
CTTAAATAAGGCAAACATTGATTCTTGTAACAGTCCCTACTCTTTTTGGATTGGGAATGATAAAC
ATATTCTTCTCATTAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCATTTCTTCCAA
CCGTTTTTGTTAGAATCAAAGTTTATCT
Found at i:391860 original size:472 final size:473
Alignment explanation
Indices: 390586--392009 Score: 2114
Period size: 472 Copynumber: 3.0 Consensus size: 473
390576 TTATAAGAAA
*
390586 TGTGACAAACATGGATTCTAGTAATGATCATCATTCACTTTGTGATTAGGCAGTATAAACTTATT
1 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCAGTATAAACTTATT
* * *
390651 CTCTTATTAGTATAAATGATATGGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTT
66 CTCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* *
390716 TCCTTAAAATCGAAGTTCATTCTTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCT
131 TCCTTAAAATCAAAGTTCATTCCTT-AATAAGGCAAGCATTGATTCTC-TAACAATCTCCACTCT
* * *
390781 TTTCAAGATTGGGAACCAAAAACAG-ATT-CTTT-TTTCAAGATACACGACATTGACGCTTTGAT
194 TTTCAAGATTGGGAACCAAAAAC-GCATTCCTTTCATT-AGGATACGCGACATTGACGCTTTGAT
390843 GTTGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
257 GTTGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
390908 AAACATGAGTAGTCACACTAATCCTCATTCTTTTTTTGATTAGGCACCACAAACTTAGTCTTCTC
322 AAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTC
* * **
390973 ATATGGATACATGATATTGATGGTTTGGTTTCGTAAGAAA-GC-TTCTTTGACACCAATTTTGGT
387 ATAAGGATACAAGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTC-TTCCCACCAATTTTGGT
* *
391036 AAAGTCTAAATTCGTGCCTCAAA
451 AAAGTCTAAGTTCGTGCCTCAAT
* * *
391059 TGCGCCGAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAACTTAT
1 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCACT-TTGTGATTAGGCAGTATAAACTTAT
* * * *
391123 TCTCATCCTTAGGACAAGTGATATGGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCTTAT
65 TCTC-TCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * *
391187 TTTCCTTAAAATCAAAGTTCCTTCCTTCAATAAGGAAAGCATTGATTCTCGTAACAGTTTCCACT
129 TTTCCTTAAAATCAAAGTTCATTCCTT-AATAAGGCAAGCATTGATTCTC-TAACAATCTCCACT
** * *
391252 CTTTTCAAGATTGGGAATGAAAAACACTTTCCTTTCATTAGGATACGCGACATTGACGCTTTGAT
192 CTTTTCAAGATTGGGAACCAAAAACGCATTCCTTTCATTAGGATACGCGACATTGACGCTTTGAT
** *
391317 GTTGCAAGAAAAGCATTTCTTCCAATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAT
257 GTTGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
391382 AAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTT-TA
322 AAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCT-
* * * * * **
391446 CATAAGGATACAAAATGTTGATGGATTGGTTTCATAAGAAAGGCTTTCTCCCCACTGATTTTGGT
386 CATAAGGATACAAGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGT
*
391511 AAAGTCTTAGTTCGTGCCTCAAT
451 AAAGTCTAAGTTCGTGCCTCAAT
* * * *
391534 TGTGACAAACATGGATTCTAGTATTGGTCTTCATTCACTTTGTGATTAGGCACTATAAACGTATT
1 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCAGTATAAACTTATT
* *
391599 CTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATT
66 C-TCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * *
391664 TTTCTTAAAATCAAATTTAATTCCTTAAGTAAGGCAAGCATTGA-T-T-TAATAATCTCCACTCT
130 TTCCTTAAAATCAAAGTTCATTCCTTAA-TAAGGCAAGCATTGATTCTCTAACAATCTCCACTCT
* *
391726 TTTCAAGATTGGGAACCAAAAACGCATTCCTTTCATTAGGATACGCAACATTGATGCTTTGATGT
194 TTTCAAGATTGGGAACCAAAAACGCATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGT
* *
391791 TGTAAGAAAAGTATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
259 TGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* *
391856 ACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGAACCATAAACTTAATCTTCTCAT
324 ACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT
* *
391921 AAGGATTCACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAA
389 AAGGATACAAGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAA
391986 GTCTAAGTTCGTGCCTCAAT
454 GTCTAAGTTCGTGCCTCAAT
392006 TGTG
1 TGTG
392010 GCAACGCCTT
Statistics
Matches: 849, Mismatches: 89, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
472 273 0.32
473 174 0.20
474 210 0.25
475 121 0.14
476 71 0.08
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (473 bp):
TGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCAGTATAAACTTATT
CTCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATTCCTTAATAAGGCAAGCATTGATTCTCTAACAATCTCCACTCTTT
TCAAGATTGGGAACCAAAAACGCATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTTG
CAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
ATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAA
GGATACAAGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGT
CTAAGTTCGTGCCTCAAT
Found at i:392111 original size:62 final size:61
Alignment explanation
Indices: 392013--392493 Score: 382
Period size: 62 Copynumber: 7.9 Consensus size: 61
392003 AATTGTGGCA
* * * * * * *
392013 ACGCCTTTT-TTTT-AAAGGCCACACGAGTTGGTGGCACCATTTGGTCCTTAAAGAGCAAG
1 ACGCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAAG
* * * * * *
392072 ACGTCTTTTTCTTTTCAAAGCCTACACAAGCTAGTGGCACTTTTTTTAGTCCTCAAAAAGTAGG
1 ACG-CTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCAC--CTTTTAGTCCTCAAAGAGCAAG
* * * * * *
392136 GCGCTTTTCCTTTTCAAAGCCCACACAAGTTGATGGCAGCTTTTTAGTCCTCAAAGAACAAG
1 ACGCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCA-CCTTTTAGTCCTCAAAGAGCAAG
* * ** * * *
392198 GCGCTTTTTCTTTTTAAAAACCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGG
1 ACGCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAAG
* * * * * * *
392259 ATGCGTTTTTCTTTT-AAAACCCACACGAGCTGGTGGCACATTTCAGTCCTTAAAGAGCATG
1 ACGC-TTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAAG
* * * *
392320 ATGCTTTTT-TCTTTCAAAGCCTACACAAGCTGGTGGCACCTTTTTAGTCCTCAATGAGCAGG
1 ACGCTTTTTCT-TTTCAAAGCCCACACAAGCTGGTGGCACC-TTTTAGTCCTCAAAGAGCAAG
* * * * * * * * *
392382 ATGCCTTTT-TTTT-GAAGCCCACATAAGTTAGTGGCACCTTCTAGTCCTCAAAGAGTAGG
1 ACGCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAAG
* * * * * *
392441 ACGCCTTTCCTTTT-AAAGCCCAAATAAGTTGGTGGCACCTTTTAGTGCTCAAA
1 ACGCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAA
392494 AATCAGGACA
Statistics
Matches: 345, Mismatches: 66, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
59 29 0.08
60 71 0.21
61 91 0.26
62 106 0.31
63 30 0.09
64 18 0.05
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (61 bp):
ACGCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAAG
Found at i:392329 original size:123 final size:123
Alignment explanation
Indices: 392018--392493 Score: 438
Period size: 123 Copynumber: 3.9 Consensus size: 123
392008 TGGCAACGCC
* *
392018 TTTT-TTTTAAAGGCCACACGAGTTGGTGGCACCATTTGGTCCTTAAAGAGCAAGACG-TCTTTT
1 TTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTTAAAGAGCAAGACGCT-TTTT
* * *
392081 TCTTTTCAAAGCCTACACAAGCTAGTGGCACTTTTTTTAGTCCTCAAAAAGTAGG--GCGCT
65 TCTTTTCAAAGCCTACACAAGCTGGTGGCAC--CTTTTAGTCCTCAAAGAGTAGGATGCG-T
* * * ** * * *
392141 TTTCCTTTTCAAAGCCCACACAAGTTGATGGCAGCTTTTTAGTCCTCAAAGAACAAGGCGC-TTT
1 TTTTCTTTT-AAAGCCCACACGAGTTGGTGGCA-CCATTTAGTCCTTAAAGAGCAAGACGCTTTT
* * *
392205 TTCTTTTTAAAAACC-ACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCGT
64 TTC-TTTTCAAAGCCTACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCGT
* * * *
392265 TTTTCTTTTAAAACCCACACGAGCTGGTGGCA-CATTTCAGTCCTTAAAGAGCATGATGCTTTTT
1 TTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCATTT-AGTCCTTAAAGAGCAAGACGCTTTTT
* * *
392329 TC-TTTCAAAGCCTACACAAGCTGGTGGCACCTTTTTAGTCCTCAATGAGCAGGATGC-C
65 TCTTTTCAAAGCCTACACAAGCTGGTGGCACC-TTTTAGTCCTCAAAGAGTAGGATGCGT
* ** * * * * *
392387 TTTT-TTTTGAAGCCCACATAAGTTAGTGGCACC-TTCTAGTCCTCAAAGAGTAGGACGC-CTTT
1 TTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCATT-TAGTCCTTAAAGAGCAAGACGCTTTTT
* * * * * *
392449 CCTTTT-AAAGCCCAAATAAGTTGGTGGCACCTTTTAGTGCTCAAA
65 TCTTTTCAAAGCCTACACAAGCTGGTGGCACCTTTTAGTCCTCAAA
392494 AATCAGGACA
Statistics
Matches: 287, Mismatches: 52, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
119 12 0.04
120 25 0.09
121 54 0.19
122 39 0.14
123 71 0.25
124 13 0.05
125 44 0.15
126 29 0.10
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (123 bp):
TTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTTAAAGAGCAAGACGCTTTTTT
CTTTTCAAAGCCTACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCGT
Found at i:392460 original size:60 final size:60
Alignment explanation
Indices: 392022--392507 Score: 402
Period size: 61 Copynumber: 8.0 Consensus size: 60
392012 AACGCCTTTT
* * * * * * *
392022 TTTTAAAGGCCACACGAGTTGGTGGCACCATTTGGTCCTTAAAGAGCAAGACGTCTTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CTTTTCC
* * * * * * *
392083 TTTTCAAAGCCTACACAAGCTAGTGGCACTTTTTTTAGTCCTCAAAAAGTAGGGCGCTTTTCC
1 TTTT-AAAGCCCACACAAGTTGGTGGCAC--CTTTTAGTCCTCAAAGAGCAGGACGCTTTTCC
* * * *
392146 TTTTCAAAGCCCACACAAGTTGATGGCAGCTTTTTAGTCCTCAAAGAACAAGG-CGCTTTTTCT
1 TTTT-AAAGCCCACACAAGTTGGTGGCA-CCTTTTAGTCCTCAAAGAGC-AGGACGC-TTTTCC
** * * *
392209 TTTTAAAAACCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCGTTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGC-TTTTCC
* * * * * * * * *
392270 TTTTAAAACCCACACGAGCTGGTGGCACATTTCAGTCCTTAAAGAGCATGATGCTTTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGC-TTTTCC
* * * * *
392331 TTTCAAAGCCTACACAAGCTGGTGGCACCTTTTTAGTCCTCAATGAGCAGGATGCCTTTT--
1 TTTTAAAGCCCACACAAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGACG-CTTTTCC
* * * * * *
392391 TTTTGAAGCCCACATAAGTTAGTGGCACCTTCTAGTCCTCAAAGAGTAGGACGCCTTTCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTCC
* * * * * *
392451 TTTTAAAGCCCAAATAAGTTGGTGGCACCTTTTAGTGCTCAAAAATCAGGACACTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTT
392508 CATTTTGTGA
Statistics
Matches: 343, Mismatches: 71, Indels: 23
0.78 0.16 0.05
Matches are distributed among these distances:
58 4 0.01
59 20 0.06
60 73 0.21
61 103 0.30
62 82 0.24
63 43 0.13
64 18 0.05
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (60 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTCC
Found at i:393848 original size:476 final size:476
Alignment explanation
Indices: 392506--401436 Score: 11114
Period size: 476 Copynumber: 18.8 Consensus size: 476
392496 TCAGGACACT
*
392506 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
392571 CTTTTGCATGGGAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* * * * *
392636 GCAAGCATTGATTCTCGTAACGGTTTCCACTCTTTTCGAGATTGGGAA-AAGAAAACACATACCG
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCA-AAAACACATTCCT
* * * * * *
392700 TTCATTAAGATATGCGACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCCTCCAACCGTTTTT
195 TTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTT
* *
392765 GATAGAATCAAAGTTTATCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAATCCTCATTCTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTCTT
* *
392829 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATTGATGGTTTCGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * *
392894 GTATGAAAGGCTTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
392959 ATGGATTCTAGTAACTG-TCTTCA
454 ATGGATTCTAGTAA-TGATCTTCA
* * * *
392982 TTCATTTTGTGATTAGGCACTACAAACGTATTCTTCTCATTAGAATAAATGATATTGATGGTATT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGAT-TT
* * * * *
393047 T-GTTTGCGTGG--A------C-TTGCCCTATTTTCC-TAAAATCCAGTGTTCAGCCCTTAAATA
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATCCCTTAAATA
* *
393101 AGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTTGAGA-TGGGAACCGAAAACACATTCC
129 AGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCC
* * * ** *
393165 TTTCGTTAGGATACGCT-ACATTGATGCTATGATGGT-GCAAGGAAAGCTTTTCTTCCAACCGTT
194 TTTCATTAGGATACG-TGACATTGACGCTTTGAT-GTCGCAAAAAAAGCATTTCTTCCAACCGTT
* * *
393228 TTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTCTCGTTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* *
393293 TTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACAATATTGATGGTTTGGTT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * *
393358 TCGTAAGCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCATACCTCAATTGTGGCAA
387 TCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAA
*
393423 ACATGGATTGTAGTAATGATCTTCA
452 ACATGGATTCTAGTAATGATCTTCA
** * * * *
393448 TTCACTTTGTGATTAGGCACTATAAACAAAGTCTCCTCATCAGTATAAATGATATTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
*
393513 CTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCATCCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* * * * *
393577 CCAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAACATTGGGAACCAAAAACACATCCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
** * * *
393642 TCATTAGGATATATGACATGGACGCTTTCG-TGTCGTAAAAAAAGCATTTTCTTTCAACCGTTTT
196 TCATTAGGATACGTGACATTGACGCTTT-GATGTCGCAAAAAAAGCA-TTTCTTCCAACCGTTTT
* * * * *
393706 TGATAGAATTAAAGTTTATCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* * * * * * *
393771 TTTAGGATTAAGCACCATAAACTTAGACTTCTCATAAGGATACGCGATATTGAAGCTTTGGTTAC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * *
393836 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAACGTCTATGTCCGTGCCTCAAATGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
*
393901 ATGGATTGTAGTAATGATCTTCA
454 ATGGATTCTAGTAATGATCTTCA
* * * * * * *
393924 TTCACGTTGTGATTGGGAACTA-AGAACATATTCTCCTCATTATGATAAATGATATTGAAGATTT
1 TTCACTTTGTGATTAGGCACTATA-AACGTATTCTTCTCATTAGGATAAATGATATTGATGA-TT
* * * * * * * * *
393988 TTTTTTTGCGTGAAAATCTTTTCTTTACCCTATTTTCCATGACATC-AATATCCTTCCCTTAAAT
64 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATCCCTTAAAT
* * * * * *
394052 AAGGCAAGCATTGATTCTCGTAATAGTCTTCTCTCTTTTCAAGATTAGGAACCAAAAACATAGTT
128 AAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACA-TT
* ** *
394117 -CTTTCATTAAGATATATGACACTGACGCTTTTG-TGTCGCAAAAAAAAAAAAGCATTTCTAT-C
192 CCTTTCATTAGGATACGTGACATTGACGC-TTTGATGTCGC-----AAAAAAAGCATTTCT-TCC
* * * * * *
394179 AACCGTTTTTGATAGTACCAAAGTTTG--TC-T--ATAAGACAAACAAGAATTGTCATACTAATC
250 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATC
* * *
394239 CTCATTCTTTTTTGGATTAGGCATCATAAACTTAGTCTTCTCATAATGATATACGATATTGATGC
315 CTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG-
* * * * *
394304 G-TTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTTGTGCCTCAAA
379 GTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAT
* * *
394368 CGTGACAAACATGGACTCTAGTAATGATCATCA
444 TGTGACAAACATGGATTCTAGTAATGATCTTCA
** * ** * * *
394401 TTCACAATGTGATAAGGCAGAATAAACTTATTC-TCTTATTAGGATAAATGATATGGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
394465 CTTTTGCATGGAAATCTTTTTTTTTTTGCTCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAAT
66 CTTTTGCATGGAAATC---TTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAAT
* * * * * * *
394530 AAGGCAAACATTGATTCTCATACCAGTCTCCACTTTTTTTGAGATTGGGAACCAAGAATACATT-
128 AAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTC
* * * ** * *
394594 C-TTCTTTTAGGATACGTGACATTGACGATTTGATGTCTCAAGTAAAGCTTTTTTTCCAACCGTT
193 CTTTC-ATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTT
* * * *
394658 TTCGATAGAATCAAAGTTTATCTCTTAAAAAACACAAACATGAGTAGTCACACTAATCCTCATTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* *
394723 TTTTTTGGATTAGGCACCATAAACTTAGTCATCTCATAAGGATACAAGATATTGATGGTTTGGTT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * * * * *
394788 TTGTAAGAAA-GCTTCCTTCCGACCAATTTTGGTAAAGTCTATGTTCATGCCTCAACTGTGCCAA
387 TCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAA
* *
394852 ATATGGATTCTAATAATGATCTTCA
452 ACATGGATTCTAGTAATGATCTTCA
* ** * * * * * *
394877 TTCACGTTGTGATTCCGCAGTATAAACTTATTCTCCTCCTTAGGATAAATGATATGGGTGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * *
394942 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* * * * *
395007 GCAAGCATTGATTCTCATAACAATCTCCACTCTTTTTGAGATTGAGAACGAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
** * * * *
395072 TTTTTAGGATACGCGACATTAATGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
196 TCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTTG
* *
395137 ATAAAATCAAAGTTTGTCTCTGAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* *
395202 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGGTTTCAT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * * * *
395267 AAGAAAGGCTTTCTTCCCACCAATTTTGGTCATGTCTAAGTTTGGGCCTCAATTATGGCAAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* * *
395332 GGATTCTAGTAGTGGTCTCCA
456 GGATTCTAGTAATGATCTTCA
* * * * *
395353 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATCAGGATAAACGATGTTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
395418 -TGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAA
66 CT-TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAA
* * * *
395482 GGCAAGCATTGATTCTCATAACGGTCACCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
** * * *
395547 TTCATTAGGATACGCAACATTGAC-CATTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGATTT
195 TTCATTAGGATACGTGACATTGACGC-TTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTT
* *
395611 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAGTAGTCGCACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
*
395676 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATTCACGATATTGATGG-TTGG-TTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* *
395739 ATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* * * *
395804 AAGTATTCTAGTAGTGGTCTTCA
454 ATGGATTCTAGTAATGATCTTCA
* * * *
395827 TTCATTTTGTGATTAGACACTATAAACGTATTCTTCTCATTAGGATATATGATGTTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
395892 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* ** * * * *
395957 GCAAGCATTGATTCTCATAATGGTCTCCACTTTTTTCGAGATTGGGAATCGATAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * * **
396022 TCATTAGGATACGCGGCATTGACCCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCCATTTTG
196 TCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTTG
* * *
396087 ATAGAATCAAAGTTTTTCTCTTAAATAAGACAAATATGAGTAGTCGCACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* * *
396152 TTGGATTGGGCACCATAAACTTAGTCTTCTCATAAAGATGCACGATATTGATGGTTTGGTTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
396217 AAG-AAGATCTTTCTTCCCACCAATTTTGGTGAAGTCTAAGTTTGGGCCTCAATTGTGACAAACA
391 AAGAAAG-GCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
*
396281 TGGATTCTAGTAATGGTCTTCA
455 TGGATTCTAGTAATGATCTTCA
* * * * * *
396303 TTCATTTTGTGATTAGGCACTGTAAATGTATTCTTCTCATTTGGATAAATGATATTGATGGTATT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
** * * *
396368 CTTTTGCATGGAAATCAATTCTTTGCCCGATTTTCC-TAAAATCCAATGTTCAGCCCTTAAATAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATCCCTTAAATAA
* * * * *
396432 GGCAAGTATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGAGAATCGAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
* * *
396497 TTCTTTAGGATACGTGACATTGACTCTTTGATGCCGCAAGAAAAA-CATTTCTTCCAA-CGTTTT
195 TTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAA-AAAAAGCATTTCTTCCAACCGTTTT
* * * *
396560 TCATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATGAGTAGTCAGACCAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
*
396625 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACTATATTGATGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * *
396690 ATCAA-AAAGGCTTTCTTCACACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAATTGTGATAAA
389 GT-AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAA
* * * *
396754 CGTGCATTCTAGTAATGGTGTTCA
453 CATGGATTCTAGTAATGATCTTCA
* * * * *
396778 TTCATTTTGTGATTAGGCATTGTCAACGTATTCTTCTCATTAGGATAAATGATATTGGTGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
396843 CTTTTGCATGGAAATCTTTTCTTTTCCATATTTTCCTTAAAAT-AAA-TTCATCCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* * * * *
396906 GCAAGCATTGATTCCCGTAACAGTCTCCACTCTTTTCAACATTGGGAACCAAAAATATATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
** * * * * * **
396971 TCATTAGGATATAT-ATATTGACGCTTTGGTGTTGTAAAAAAAGTATTTCTTTTAACCG-TTTTG
196 TCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTTG
* * * * * *
397034 ACA-ATATCAACGTTTGTAGAGTCTAAAATAAGAC---C---A--A--CATACTAGTCCTCATTC
261 ATAGA-ATCAAAGTTTGT---CTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* * * *
397088 TTTTTTAGATTAGGCACCATAAACTTAGTTTTCTCATAAGGATACACGATATTGAAGCTTTGGTT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * * *
397153 TCATAAGAATGGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAAATGTGACAG
387 TCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAA
*
397218 ACATGGATTGTAGTAATGATCTTCA
452 ACATGGATTCTAGTAATGATCTTCA
* * * ** * * * *
397243 TTCTCATTGTGCTTAGGCACTACGAACATATTCTCCTCATTAGGATAAAAGATATTGATGGTTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGAT-G--AT
* * * * * * *
397308 TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCATGACATC-AATATTCTTCCCTTAAA
63 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATCCCTTAAA
* *
397372 TAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACT-TTTTCAAGATTGGGAACCAAAAATACAT
127 TAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACAT
* ** * * *
397436 TCCTTTCATTAAGATATATGATATTGACGCTTTGGTGTCGCAAAAAAAGCATTTCTAT-CAACCA
191 TCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCT-TCCAACCG
* * * * *
397500 TTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTTATACTAATCCTCAT
255 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCAT
* * *
397565 TCTTTTTTGGATTAGGCACCATAAATTTAGTCTTTTCATAAGGATACACGATATTGATGTTTTGG
320 TCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGG
* *
397630 TTTCGTAAGAAA-GCTTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTG-C
385 TTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGAC
* *
397693 TGAACATGCATTCTAGTAATGATCTTCA
450 -AAACATGGATTCTAGTAATGATCTTCA
* * * * * * * *
397721 TTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * *
397786 TTTTTGCATGAAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCGT-CCTTAAATAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTTCATCCCTTAAATAA
* * * *
397850 GGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
** * *
397915 TTCATTAGGATACGTGACATTGACGCTTTGATGTTACAAGAAAAGCATCTCTTCCAACCGTTTTT
195 TTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTT
* *
397980 GATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTTATT-TGT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCT-T
* * *
398044 TTTTGGATTAGGCACCATAAACTTAGTCTTCGCATAAGGATACACGATATTAACGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * ** *
398109 ATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* * *
398174 AAGGATTCTAGTAGTGGTCTTCA
454 ATGGATTCTAGTAATGATCTTCA
* * * *
398197 TTCATTTTGTGATTAGGCACTGTAAACGTATTCTTCTCATTAGGATATATGATGTTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
398262 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* ** * *** * *
398327 GCAAGCATTGATTCGCGTAATGGTCTCCACTTTTTTCGAGATTGGGAATTGATAACACAGTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * * * **
398392 TCATTAGGATACGCGGCATTGACCCTTTGATGTCTCAAGAAAAGCATTTTTTCCAACCAATTTTG
196 TCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTTG
* * *
398457 ATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
** * *
398522 TTGGATTAGGCACTGTAAACTTAGTCTTTTCATAAGGATACACGATATTGATGTTTTGGTTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
398587 AAGAAA-GCTTCCATCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTG-CTGAACA
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGAC-AAACA
*
398650 TGCATTCTAGTAATGATCTTCA
455 TGGATTCTAGTAATGATCTTCA
* * * * * * * *
398672 TTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
398737 CTTTTGCATGAAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATCAAAGTTCCGT-CCTTAAATAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTTCATCCCTTAAATAA
* * * * *
398801 GGCAAGCATAGATTCTTGTAACAGTTTCCTCTCTTTTCGAGATTGGGAACAAAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
** * *
398866 TTCATTAGGATACGTGACATTGACGCTTTGATGTTACAAGAAAAGCATCTCTTCCAACCGTTTTT
195 TTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTT
*
398931 GATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTCATT-TGT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCT-T
* * *
398995 TTTTGGATTAGGCACCATAAACTTAGTCTTCGCATAAGGATACACGATATTAACGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * *
399060 ATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTTTGACAAAA
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* *
399125 ATGGATTCCAGTAATGGTCTTCA
454 ATGGATTCTAGTAATGATCTTCA
*
399148 TTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * *
399213 CTTTCGCAAGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* * **
399278 GCAAGCATTGATTCTTGTAACAGTC-CCTACTCTTTTTGAGATTGGGAATGAAAAACACATTCCT
131 GCAAGCATTGATTCTCGTAACAGTCTCC-ACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
** *
399342 TTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTT
195 TTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTT
* * *
399407 GATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACATGAGTACTCACACTAATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
*
399472 TCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* *
399537 TACA-AAAGGCTTTCTTCCCCCCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTATGACAAAC
390 TA-AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* *
399601 ATGGATTCTAGTAGTGGTCTTCA
454 ATGGATTCTAGTAATGATCTTCA
* * *
399624 TTCATTTTGTGATTAGGCATTATAATCGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * ** * *
399689 CTTTGGCTTGGAAATTTTTTCTTTGCCCTATTTTCCTTAAAAACAAATTTAATTTCGTAAATGAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* * * * * * *
399754 GCAAGCATTGATTCTCATAACGGTCTCCACTCTTTTTGAGATTAGGAACCGAAAGCACGTTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
*** * * *
399819 TCATTAGGATACACAACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCATTTTTG
196 TCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTTG
** *
399884 ATAGAATCAAAGTTTGTCTCTTAAATGGGGCAGAA-ATGAGTAGTCACACTAATCCTCATTCTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTCTTT
399948 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * * * *
400013 TAAGAAAGGCTTTCTTCCCGCTAATTTTGGTAAACTCTAAGTTCATACCTCAATTGTGACAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
400078 TGGATTCTAGTAACT-ATCTTCA
455 TGGATTCTAGTAA-TGATCTTCA
* * * * * * *
400100 ATCATTTTGTGATTAGGCACTACAAACGTATTCTTCTTATTAGAATAAATGATATTGATGGTATT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
400165 CTTTTGCGTGG--A------C-TTGCCCTATTTTCC-TAAACTCCAATGTTCAGCCTTTAAATAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATCCCTTAAATAA
* * *
400220 GGCAAGCATTAATTCTCGTAATAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
* * * * *
400285 TTCTTTAGGATACGCGACATTGACGCTGTGATG--GCACAAAAAAGCTTTTCTTCGAACCGTTTT
195 TTCATTAGGATACGTGACATTGACGCTTTGATGTCGCA-AAAAAAGCATTTCTTCCAACCGTTTT
* * *
400348 TGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACTTGAGTAGTCACACTAATTCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* * * *
400413 TTATGGATTAGGCACCATAAGCTTAGTCTTCTTATAAGGATACACGACATTGATGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * *
400478 GTAAGAAAAGCTTTCTTCCCACCAATTTGGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* *
400543 GTGGATTGTAGTAATGATCTTCA
454 ATGGATTCTAGTAATGATCTTCA
** * *
400566 TTCACTTTGTGATTAGGCACTATAAACAAAGTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
400631 CTTTTGCATGGAAATTTTTTCTTTGCCTTATTTTCCTTAAAATCAAA-TTCATCCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
* * * *
400695 GCAAGCGTTGATTCTCGTAACAGTCTCCACTCTTTTCAACATTAGGAACCAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * ** * * * * *
400760 TCATTAGTACATATGACATTGATGCTTTGGTGTCGTAAAAAAAGCGTTTCTTTCAACCGTTTTTG
196 TCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTTG
* * *
400825 ATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* * * * * * *
400890 TAGGATTAGGCACCATAAACCTAGTCTTCTCATAAGGATAGACAACATTGAAGCTTTGGTTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* *
400955 AAGAAAGGCTTTCTTCCCACCAA-TTTGGTAAAGTCTATGTTCGTGCCTCGAA-TATGACAAACA
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTC-AATTGTGACAAACA
* *
401018 TGGATTGTAGTAATGATCTTTA
455 TGGATTCTAGTAATGATCTTCA
* * * * * * *
401040 TTCACGTTGTGATTGGGCACTATGAACATATTCTCCTCATTATGATAAATGATATTGATGATTTA
1 TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * * *
401105 CTTTTGCATGGAAATTTTTTCTTTGCCCTATTTTATCATGACATC-AATATTCTTCCTTTAAATA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTTAAAATCAAAT-TTCATCCCTTAAATA
*
401169 AGGCAAGCATTGATTCTCGTAACAGTCTTCC-CTCTTTTCAAGATTGGGAACCAAAAACACATTC
129 AGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACATTC
* ** * * *
401233 CTTTCATTAAGATATATGACATTGATGCTTTGGTGTCACAAAAAAAGCATTTCTAT-CAACCGTT
193 CTTTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCT-TCCAACCGTT
* * * * * *
401297 TTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACGAACATGAATAGTCATACTAATCTTCATTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* * * *
401362 TTTTTTGGATTAGGCACCATACACTTAGTCTTCTCATAATGATACACAATATTGATGCTTTGGTT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
**
401427 TTATAAGAAA
387 TCGTAAGAAA
401437 TGTGACAAAC
Statistics
Matches: 7370, Mismatches: 946, Indels: 278
0.86 0.11 0.03
Matches are distributed among these distances:
464 2 0.00
465 209 0.03
466 622 0.08
467 176 0.02
468 45 0.01
469 13 0.00
470 84 0.01
471 50 0.01
472 98 0.01
473 84 0.01
474 853 0.12
475 1458 0.20
476 2822 0.38
477 426 0.06
478 298 0.04
479 88 0.01
480 2 0.00
482 29 0.00
483 11 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (476 bp):
TTCACTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAG
GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
TCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAAAAAAGCATTTCTTCCAACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
GGATTCTAGTAATGATCTTCA
Found at i:398494 original size:951 final size:951
Alignment explanation
Indices: 392506--401436 Score: 11082
Period size: 951 Copynumber: 9.4 Consensus size: 951
392496 TCAGGACACT
*
392506 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
392571 CTTTTGCATGGGAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
* * ** * *
392636 GCAAGCATTGATTCTCGTAACGGTTTCCACTCTTTTCGAGATTGGGAAAAGAAAACACATACCGT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCTT
* * * **
392701 TCATTAAGATATGCGACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCCTCCAACCGTTTTTG
196 TCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGTTTTTG
* *
392766 ATAGAATCAAAGTTTATCTCTTAAATAGGACAGAA-ATGAGTAGTCACACTAATCCTCATTCTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAGTAGTCACACTAATCCTCATTCTTT
* *
392830 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATTGATGGTTTCGTTTCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * * *
392895 TATGAAAGGCTTTCTTCCCACTAATTTTGGTAAACTCTAAGTTCGTACCTCAATTGTGACAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG-CAAACA
* * *
392960 TGGATTCTAGTAACTG-TCTTCATTCATTTTGTGATTAGGCACTACAAACGTATTCTTCTCATTA
454 TGGATTCTAGTAA-TGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTA
* * * *
393024 GAATAAATGATATTGATGGTATTT-GTTTGCGTGG--A------C-TTGCCCTATTTTCC-TAAA
518 GGATAAATGATATTGATGAT-TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
** *** *
393078 ATCCAGTGTTCAGCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTTGAG
582 AT-CAAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAG
* * * * *
393143 A-TGGGAACCGAAAACACATTCCTTTCGTTAGGATACGCT-ACATTGATGCTATGATGGTGCAAG
646 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACG-TGACATTGACGCTTTGATGTTGCAAG
* *
393206 GAAAGCTTTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGA
710 AAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGA
* * *
393271 GTAGTCACACTAATTCTCGTTCTTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
775 GTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* *
393336 ACACAATATTGATGGTTTGGTTTCGTAAGCAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAA
840 ACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAA
* * * *
393401 GTTCATACCTCAATTGTGGCAAACATGGATTGTAGTAATGATCTTCA
905 GTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
* * * * * *
393448 TTCACTTTGTGATTAGGCACTATAAACAAAGTCTCCTCATCAGTATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * *
393513 CTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCATCCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
* * * * * *
393577 CCAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAACATTGGGAACCAAAAACACATCCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCTT
*** * * * *
393642 TCATTAGGATATATGACATGGACGCTTTCG-TGTCGTAAAAAAAGCATTTTCTTTCAACCGTTTT
196 TCATTAGGATACGCGACATTGACGCTTT-GATGTCGCAAGAAAAGCATTTT-TTCCAACCGTTTT
* * * * *
393706 TGATAGAATTAAAGTTTATCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* * * * * * *
393771 TTTAGGATTAAGCACCATAAACTTAGACTTCTCATAAGGATACGCGATATTGAAGCTTTGGTTAC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * *
393836 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAACGTCTATGTCCGTGCCTCAAATGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG-CAAAC
* * * * *
393901 ATGGATTGTAGTAATGATCTTCATTCACGTTGTGATTGGGAACTA-AGAACATATTCTCCTCATT
453 ATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATA-AACGTATTCTCCTCATT
* * * * * * * *
393965 ATGATAAATGATATTGAAGATTTTTTTTTTGCGTGAAAATCTTTTCTTTACCCTATTTTCCATGA
517 AGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
394030 CATC-AA-TATCCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTTCTCTCTTTTCA
581 AATCAAAGT-TCCTT-CCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCG
* * * ** * *
394093 AGATTAGGAACCAAAAACATAGTT-CTTTCATTAAGATATATGACACTGACGCTTTTG-TGTCGC
644 AGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACGTGACATTGACGC-TTTGATGTTGC
* * * *
394156 AAAAAAAAAAAAGCATTTCTAT-CAACCGTTTTTGATAGTACCAAAGTTTG--TC-T--ATAAGA
707 -----AAGAAAAGCATTTCT-TCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGA
* * * * *
394215 CAAACAAGAATTGTCATACTAATCCTCATTCTTTTTTGGATTAGGCATCATAAACTTAGTCTTCT
766 CAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCT
* * * *
394280 CATAATGATATACGATATTGATGCG-TTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGG
831 CATAAGGATACACGATATTGATG-GTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGG
* * ** * *
394344 TAAAGTCTACGTTTGTGCCTCAAACGTGACAAACATGGACTCTAGTAATGATCATCA
895 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
*** * ** * * *
394401 TTCACAATGTGATAAGGCAGAATAAACTTATTC-TCTTATTAGGATAAATGATATGGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
394465 CTTTTGCATGGAAATCTTTTTTTTTTTGCTCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAAT
66 CTTTTGCATGGAAATC---TTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAAT
* * * * * *
394530 AAGGCAAACATTGATTCTCATACCAGTCTCCACTTTTTTTGAGATTGGGAACC-AAGAATACATT
128 AAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAA-AACACATT
* * * * * *
394594 -C-TTCTTTTAGGATACGTGACATTGACGATTTGATGTCTCAAGTAAAGCTTTTTTTCCAACCGT
192 CCTTTC-ATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGT
* * * *
394657 TTTCGATAGAATCAAAGTTTATCTCTTAAAAAACACAAACATGAGTAGTCACACTAATCCTCATT
256 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATT
* *
394722 CTTTTTTGGATTAGGCACCATAAACTTAGTCATCTCATAAGGATACAAGATATTGATGGTTTGGT
321 CTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGT
* * * * * *
394787 TTTGTAAGAAA-GCTTCCTTCCGACCAATTTTGGTAAAGTCTATGTTCATGCCTCAACTGTGCCA
386 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG-CA
* * * ** * * *
394851 AATATGGATTCTAATAATGATCTTCATTCACGTTGTGATTCCGCAGTATAAACTTATTCTCCTCC
450 AACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCA
* *
394916 TTAGGATAAATGATATGGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
515 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
** * * *
394981 AAATCAAAGTTAATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTTGA
580 AAATCAAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGA
* * ** * * * *
395046 GATTGAGAACGAAAAACACATTCCTTTTTTTAGGATACGCGACATTAATGCTTTGATGTCGCAAG
645 GATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGCAAG
* * *
395111 AAAAGCATTTCTTCCAACCGTTTTTGATAAAATCAAAGTTTGTCTCTGAAATAAGACAAACATGA
710 AAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGA
395176 GTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
775 GTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* * * *
395241 GCACGATATTGATGGTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGGTCATGTCTAA
840 ACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAA
* * * * * * *
395306 GTTTGGGCCTCAATTATGGCAAACATGGATTCTAGTAGTGGTCTCCA
905 GTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
* * *
395353 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATCAGGATAAACGATGTTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
395418 -TGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAA
66 CT-TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAA
* * *
395482 GGCAAGCATTGATTCTCATAACGGTCACCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCT
* *
395547 TTCATTAGGATACGCAACATTGAC-CATTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGATTT
195 TTCATTAGGATACGCGACATTGACGC-TTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGTTTT
* *
395611 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAGTAGTCGCACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
*
395676 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATTCACGATATTGATGG-TTGG-TTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* *
395739 ATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG-CAAAC
* * * * * * *
395804 AAGTATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGACACTATAAACGTATTCTTCTCATTA
453 ATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTA
* *
395869 GGATATATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
518 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* ** * ** *
395934 TCAAATTTAATTCCTTAAATAAGGCAAGCATTGATTCTCATAATGGTCTCCACTTTTTTCGAGAT
583 TCAAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGAT
* * * * * * *
395999 TGGGAATCGATAACACATTCCTTTCATTAGGATACGCGGCATTGACCCTTTGATGTCGCAAGAAA
648 TGGGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGCAAGAAA
* ** * * *
396064 AGCATTTTTTCCAACCCATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAATATGAGTA
713 AGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTA
* * * *
396129 GTCGCACTAATCCTCATTCTTTTTTGGATTGGGCACCATAAACTTAGTCTTCTCATAAAGATGCA
778 GTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* *
396194 CGATATTGATGGTTTGGTTTCGTAAG-AAGATCTTTCTTCCCACCAATTTTGGTGAAGTCTAAGT
843 CGATATTGATGGTTTGGTTTCGTAAGAAAG-GCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGT
* * *
396258 TTGGGCCTCAATTGTGACAAACATGGATTCTAGTAATGGTCTTCA
907 TCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
* ** * * *
396303 TTCATTTTGTGATTAGGCACTGTAAATGTATTCTTCTCATTTGGATAAATGATATTGATGGTATT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
** * * * **
396368 CTTTTGCATGGAAATCAATTCTTTGCCCGATTTTCC-TAAAATCCAATGTTCAGCCCTTAAATAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTAATTCCTTAAATAA
* * * *
396432 GGCAAGTATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGAGAATCGAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCT
* * * * * *
396497 TTCTTTAGGATACGTGACATTGACTCTTTGATGCCGCAAGAAAAACATTTCTTCCAA-CGTTTTT
195 TTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGTTTTT
* * * *
396561 CATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATGAGTAGTCAGACCAATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
* *
396626 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACTATATTGATGGTTTGGTTTCA
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * *
396691 TCAA-AAAGGCTTTCTTCACACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAATTGTGATAAAC
390 T-AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG-CAAAC
* * * * * * * * *
396755 GTGCATTCTAGTAATGGTGTTCATTCATTTTGTGATTAGGCATTGTCAACGTATTCTTCTCATTA
453 ATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTA
* * *
396820 GGATAAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCATATTTTCCTTAAAA
518 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * * *
396885 T-AAA-TTCATCCCTTAAATAAGGCAAGCATTGATTCCCGTAACAGTCTCCACTCTTTTCAACAT
583 TCAAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGAT
* * ** * * * *
396948 TGGGAACCAAAAATATATTCCTTTCATTAGGATATAT-ATATTGACGCTTTGGTGTTGTAAAAAA
648 TGGGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGCAAGAAA
* ** * * *
397012 AGTATTTCTTTTAACCG-TTTTGACA-ATATCAACGTTTGTAGAGTC-TAAAATAAGAC---C--
713 AGCATTTCTTCCAACCGTTTTTGATAGA-ATCAAAGTTTGT---CTCTTAAAA-AAGACAAACAT
* * * *
397069 -A--A--CATACTAGTCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTTTTCTCATAAGG
773 GAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG
* * * *
397129 ATACACGATATTGAAGCTTTGGTTTCATAAGAATGGCTTTCTTCCCACCAATTTTGGTAAAGTCT
838 ATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCT
* * * *
397194 ATGTTCGTGCCTCAAATGTGACAGACATGGATTGTAGTAATGATCTTCA
903 AAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
* * ** * * *
397243 TTC-TCATTGTGCTTAGGCACTACGAACATATTCTCCTCATTAGGATAAAAGATATTGATGGTTT
1 TTCAT-TTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGAT-G--A
* * * * * * *
397307 TTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCATGACATCAATATTCT--TCCCTTA
62 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-ATT-TAATTCCTTA
* * *
397370 AATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACT-TTTTCAAGATTGGGAACCAAAAATAC
125 AATAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCGAAAACAC
* *** * * * *
397434 ATTCCTTTCATTAAGATATATGATATTGACGCTTTGGTGTCGCAAAAAAAGCATTTCTAT-CAAC
189 ATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTT-TTTCCAAC
* * * * * *
397498 CATTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTTATACTAATCCTC
253 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTC
* * *
397563 ATTCTTTTTTGGATTAGGCACCATAAATTTAGTCTTTTCATAAGGATACACGATATTGATGTTTT
318 ATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
* *
397628 GGTTTCGTAAGAAA-GCTTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTG
383 GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG
* * * * * *
397692 CTGAACATGCATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCC
448 C-AAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCC
* * * * * * *
397757 TCCTTAGGATAAGTGATATGGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCTCTTTTTTCC
512 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* * * *
397822 TTAAAATCAAAGTTCCGTCCTTAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCACTCTTTT
577 TTAAAATCAAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTT
* *
397887 CGAGATTGGGAACAAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTAC
642 CGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGC
*
397952 AAGAAAAGCATCTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACA
707 AAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACA
* *
398017 TGAGTAGTCACACTAATCCTTATT-TGTTTTTGGATTAGGCACCATAAACTTAGTCTTCGCATAA
772 TGAGTAGTCACACTAATCCTCATTCT-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAA
* * * * **
398081 GGATACACGATATTAACGGTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAAATTTATTAAAGT
836 GGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGT
* * * *
398146 CTAAGTTCGGGCCTCAATTGTGACAAACAAGGATTCTAGTAGTGGTCTTCA
901 CTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
* * * *
398197 TTCATTTTGTGATTAGGCACTGTAAACGTATTCTTCTCATTAGGATATATGATGTTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
398262 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
* ** * ** * *
398327 GCAAGCATTGATTCGCGTAATGGTCTCCACTTTTTTCGAGATTGGGAATTGATAACACAGTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCTT
* * * **
398392 TCATTAGGATACGCGGCATTGACCCTTTGATGTCTCAAGAAAAGCATTTTTTCCAACCAATTTTG
196 TCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGTTTTTG
* * *
398457 ATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
** * *
398522 TTGGATTAGGCACTGTAAACTTAGTCTTTTCATAAGGATACACGATATTGATGTTTTGGTTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
398587 AAGAAA-GCTTCCATCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGCTGAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGC-AAACAT
* * * * * *
398651 GCATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGG
455 GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTAGG
* * * * *
398716 ATAAGTGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTTTTTTCCTTAAAATC
520 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
398781 AAAGTTCCGTCCTTAAATAAGGCAAGCATAGATTCTTGTAACAGTTTCCTCTCTTTTCGAGATTG
585 AAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTG
* *
398846 GGAACAAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTACAAGAAAAG
650 GGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGCAAGAAAAG
*
398911 CATCTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGT
715 CATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGT
*
398976 CACACTAATCCTCATT-TGTTTTTGGATTAGGCACCATAAACTTAGTCTTCGCATAAGGATACAC
780 CACACTAATCCTCATTCT-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
* * * *
399040 GATATTAACGGTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTC
844 GATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTC
* * * *
399105 GTGCCTCAATTTTGACAAAAATGGATTCCAGTAATGGTCTTCA
909 GTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
*
399148 TTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
399213 CTTTCGCAAGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
* * *
399278 GCAAGCATTGATTCTTGTAACAGTC-CCTACTCTTTTTGAGATTGGGAA-TGAAAAACACATTCC
131 GCAAGCATTGATTCTCGTAACAGTCTCC-ACTCTTTTCGAGATTGGGAACCG-AAAACACATTCC
* *
399341 TTTCATTAGGATACACGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTT
194 TTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGTTTT
* * *
399406 TGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACATGAGTACTCACACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
*
399471 TTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* *
399536 GTACA-AAAGGCTTTCTTCCCCCCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTATGACAAA
389 GTA-AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTG-CAAA
* * * * * *
399600 CATGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCATTATAATCGTATTCTTCTCATT
452 CATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATT
* * *
399665 AGGATAAATGATATTGATGATTTTCTTTGGCTTGGAAATTTTTTCTTTGCCCTATTTTCCTTAAA
517 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * ** * * * * * *
399730 AACAAATTTAATTTCGTAAATGAGGCAAGCATTGATTCTCATAACGGTCTCCACTCTTTTTGAGA
582 ATCAAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGA
* * * * *** * *
399795 TTAGGAACCGAAAGCACGTTCCTTTCATTAGGATACACAACATTGACCCTTTGATGTCGCAAGAA
647 TTGGGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGCAAGAA
* *** *
399860 AAGCATTTCTTCCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATGGGGCAGAA-ATGAG
712 AAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACA-AACATGAG
399924 TAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
776 TAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * *
399989 CACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCGCTAATTTTGGTAAACTCTAAG
841 CACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAG
* *
400054 TTCATACCTCAATTGTGACAAACATGGATTCTAGTAACT-ATCTTCA
906 TTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAA-TGATCTTCA
* * * * * * *
400100 ATCATTTTGTGATTAGGCACTACAAACGTATTCTTCTTATTAGAATAAATGATATTGATGGTATT
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
400165 CTTTTGCGTGG--A------C-TTGCCCTATTTTCC-TAAACTCCAATGTTCA-GCCTTTAAATA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTAATTCC-TTAAATA
* *
400219 AGGCAAGCATTAATTCTCGTAATAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCC
129 AGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCC
* * * * *
400284 TTTCTTTAGGATACGCGACATTGACGCTGTGATGGCACAA-AAAAGC-TTTTCTTCGAACCGTTT
194 TTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTT-TTCCAACCGTTT
* * *
400347 TTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACTTGAGTAGTCACACTAATTCTCATTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCT
* * * *
400412 TTTATGGATTAGGCACCATAAGCTTAGTCTTCTTATAAGGATACACGACATTGATGGTTTGGTTT
323 TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTT
* *
400477 CGTAAGAAAAGCTTTCTTCCCACCAATTTGGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAA
388 CGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT-GCAAA
* * ** *
400542 CGTGGATTGTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAAAGTCTCCTCATT
452 CATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATT
* *
400607 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCTTATTTTCCTTAAA
517 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
400672 ATCAAA-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCACTCTTTTCAACA
582 ATCAAAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGA
* * * ** * * * * *
400736 TTAGGAACCAAAAACACATTCCTTTCATTAGTACATATGACATTGATGCTTTGGTGTCGTAAAAA
647 TTGGGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGCAAGAA
* * *
400801 AAGCGTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC-TAAAATAAGACAAACATGAA
712 AAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAA-AAGACAAACATGAG
* * *
400865 TAGTCATACTAATCCTCATTCTTTTTAGGATTAGGCACCATAAACCTAGTCTTCTCATAAGGATA
776 TAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * * *
400930 GACAACATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAA-TTTGGTAAAGTCTATG
841 CACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAG
* * *
400994 TTCGTGCCTCGAA-TATGACAAACATGGATTGTAGTAATGATCTTTA
906 TTCGTGCCTC-AATTGTGACAAACATGGATTCTAGTAATGATCTTCA
** * * * * *
401040 TTCACGTTGTGATTGGGCACTATGAACATATTCTCCTCATTATGATAAATGATATTGATGATTTA
1 TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * *
401105 CTTTTGCATGGAAATTTTTTCTTTGCCCTATTTTATCATGACATC-AATATT-CTTCCTTTAAAT
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTTAAAATCAAAT-TTAATTCC-TTAAAT
* *
401168 AAGGCAAGCATTGATTCTCGTAACAGTCTTCC-CTCTTTTCAAGATTGGGAACCAAAAACACATT
128 AAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCGAAAACACATT
* *** * * * * *
401232 CCTTTCATTAAGATATATGACATTGATGCTTTGGTGTCACAAAAAAAGCATTTCTAT-CAACCGT
192 CCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTT-TTTCCAACCGT
* * * * * *
401296 TTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACGAACATGAATAGTCATACTAATCTTCATT
256 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATT
* * * *
401361 CTTTTTTGGATTAGGCACCATACACTTAGTCTTCTCATAATGATACACAATATTGATGCTTTGGT
321 CTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGT
**
401426 TTTATAAGAAA
386 TTCGTAAGAAA
401437 TGTGACAAAC
Statistics
Matches: 6925, Mismatches: 926, Indels: 267
0.85 0.11 0.03
Matches are distributed among these distances:
939 2 0.00
940 312 0.05
941 373 0.05
942 683 0.10
943 422 0.06
944 156 0.02
945 91 0.01
946 37 0.01
947 75 0.01
948 34 0.00
949 238 0.03
950 935 0.14
951 1678 0.24
952 971 0.14
953 403 0.06
954 341 0.05
955 70 0.01
956 65 0.01
958 38 0.01
959 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (951 bp):
TTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCGAAAACACATTCCTT
TCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTTTTCCAACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGCAAACATG
GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTAGGA
TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCCTTCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGG
GAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGACGCTTTGATGTTGCAAGAAAAGC
ATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTC
ACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGA
TATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGT
GCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
Found at i:399224 original size:158 final size:159
Alignment explanation
Indices: 394725--401108 Score: 713
Period size: 159 Copynumber: 40.4 Consensus size: 159
394715 CCTCATTCTT
* * * * * * *
394725 TTTTG-GATTAGGCACCATAAACTTAGTCATCTCATAAGGATACAA-GATATTGATGGTTTGGTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATA-AACGATATTGATGATTTGCTT
* * * * * * * * ** *
394788 TTGTAAG-AAAGC-TTCCTTCCGACCAATTTTGGTAAAGTCTATGTTCATGCCTCAACTGTGCCA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * * *
394851 AATATGGATTCTAATAATGATCTTCATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
** ** * * * * * * * *
394881 CGTTGTGATTCCGCAGTATAAACTTATTCTCCTCCTTAGGATAAATGATATGGGTGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * * * * ** * * * * * * *
394946 TGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTAATTCCTTAAATAAGGCA
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * *** * * *
395010 AGCATTGATTCTCA-TAACAATCTCCACTCT
130 AACATGGATTC-CAGTAATGGTCTTCATTCA
* * * * * ** ** * * * *
395040 TTTTGAGATT-GAGAACGAAAAACACATTCCTT-TTTTTAGGATACGCGACATTAATGCTTTGAT
1 TTTTGTGATTAG-GCACTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCT
* * ** * * *
395103 GTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAAAATCAAAGTT--TGTCTCTGAAATAAG
64 TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATG-C-CTCAAATAAG
* * *
395166 ACAAACATGAGTAGTCACACTAA---TCCTCATTC-
127 ACAAACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * ** * *
395198 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
** * * * * * *** * * *
395263 TCATAAGAAAGGC-TTTCTTCCCACCAATTTTGGTCATGTCTAAGTTTGGGCCTCAATTATGGCA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * *
395327 AACATGGATTCTAGTAGTGGTCTCCATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
* *
395357 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATCAGGATAAACGATGTTGATGATTTTTG-T
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGA--TTTGCT
* * * * ** * * * * * * * *
395421 TT-GCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGG
64 TTCGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATGCCTCAAATAAGA
* * * ** *
395484 CAAGCATTGATTCTCA-TAACGGTCACCACTC-
128 CAAACATGGATTC-CAGTAATGGTCTTCATTCA
* * * * * ** * * ** *
395515 TTTTCGAGATTGGGAACCGA-AAACACATTCCTT-TCATTAGGATACGCAACATTGACCATTTGA
1 TTTT-GTGATTAGGCA-CTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGC
* * * * * *
395578 TGTCGCAAGAAAAGCATTTTTTCCAACCGATTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATA
63 TTTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATG-C-CTCAAATA
* * * *
395640 AGACAAATATGAGTAGTCGCACTAA---TCCTCATTC-
125 AGACAAACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * ** * *
395674 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATTCACGATATTGATG-GTTG-GT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
** * * * ** * **
395737 TCATAAGAAAGGC-TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGACA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * * *
395801 AACAAGTATTCTAGTAGTGGTCTTCATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
* * * * * *
395831 TTTTGTGATTAGACACTATAAACGTATTCTTCTCATTAGGATATATGATGTTGATGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * * * * ** * * * * * * * *
395896 TGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCA
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * *
395960 AGCATTGATTCTCA-TAATGGTCTCCACTT--
130 AACATGGATTC-CAGTAATGGTCTTCA-TTCA
* * * * * ** ** *** *
395989 TTTTCGAGATTGGGAATCGATAACACAT-TCCTT-TCATTAGGATACGCGGCATTGACCCTTTGA
1 TTTT-GTGATTAGGCA-CTATAA-ACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGC
* * * * * * * *
396052 TGTCGCAAGAAAAGCATTTTTTCCAACCCATTTTGATAGAA-TCAAAGTT-TTTCTCTTAAATAA
63 TTTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATGC-CTCAAATAA
* * * *
396115 GACAAATATGAGTAGTCGCACTAA---TCCTCATTC-
126 GACAAACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * * * ** * *
396148 TTTTTTGGATTGGGCACCATAAACTTAGTCTTCTCATAAAGATGCACGATATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * * *** * **
396213 TCGTAAGAAGATC-TTTCTTCCCACCAATTTTGGTGAAGTCTAAGTTTGGGCCTCAATTGTGACA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
*
396277 AACATGGATTCTAGTAATGGTCTTCATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
* ** * * *
396307 TTTTGTGATTAGGCACTGTAAATGTATTCTTCTCATTTGGATAAATGATATTGATGGTATT-CTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGAT-TTGCTT
* * * * * ** * ** * * * *
396371 TTGCATGGAAATCAATTCTTTGC-CCGATTTTCCTAAAATCCAATGTTCA-GCCCTTAAATAAGG
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGT-CAAAGTTCATG-CCTCAAATAAGA
** * ** * *
396434 CAAGTATTGATTCTCA-TAACAGTCTCCACTC-
128 CAAACATGGATTC-CAGTAATGGTCTTCATTCA
* * * * * *** * *
396465 TTTTCGAGATT-GAGAATCGA-AAACACATTCCTT-TCTTTAGGATACGTGACATTGACT-CTTT
1 TTTT-GTGATTAG-GCA-CTATAAACATATT-CTTCTCATTAGGATAAACGATATTGA-TGATTT
* ** * * ** ** *
396526 GATGCCGCAAGAAAAACATTTCTT-CCAACGTTTTTCATAGAA-TCAAAGTT--TGTCTCTTAAA
61 GCTTTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATG-C-CTCAAA
* * **** *
396587 TAAGAGAAACATGAGTAGT-CAG-ACCAATCCTCATTC-
123 TAAGACAAACATG-G-ATTCCAGTAATGGTCTTCATTCA
* * * * * * * * *
396623 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACTATATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * * ** *
396688 TCATCAA-AAAGGC-TTTCTTCACACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAATTGTGAT
65 TC-GCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGAC
* * * *
396751 AAACGTGCATTCTAGTAATGGTGTTCATTCA
129 AAACATGGATTCCAGTAATGGTCTTCATTCA
* * * * * * *
396782 TTTTGTGATTAGGCATTGTCAACGTATTCTTCTCATTAGGATAAATGATATTGGTGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * * * * * * * * * * *
396847 TGCATGGAAATCTTTTCTTTTCCA--TATTTTCCTTAAAAT-AAA-TTCATCCCTTAAATAAGGC
66 CGCAAGAAAAGCATTTC-TTCCCACCAATTTT-GTTAAAGTCAAAGTTCATGCCTCAAATAAGAC
* * * ** * *
396908 AAGCATTGATTCCCGTAACAGTCTCCACTC-
129 AAACATGGATTCCAGTAATGGTCTTCATTCA
*** * * * * * * * * * *
396938 TTTTCAACATTGGGAACCAAAAATATATTCCTT-TCATTAGGATATA-TATATTGACGCTTTGGT
1 TTTT-GTGATTAGGCACTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCT
* * * *** * ** * * * * *
397001 GTT-GTAAAAAAAGTATTTCTTTTAACC-GTTTTGACAATA-TCAACGTTTGTAGAGTCTAAAAT
64 -TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAA-AGTCAAAG-TT-CA-TGCCTCAAAT
* *
397063 AAGACCAACAT--A---C--T-A--GTCCTCATTC-
124 AAGACAAACATGGATTCCAGTAATGGTCTTCATTCA
* * * * * * * *
397088 TTTTTTAGATTAGGCACCATAAACTTAGTT-TTCTCATAAGGATACACGATATTGAAGCTTTGGT
1 TTTTGT-GATTAGGCACTATAAACATA-TTCTTCTCATTAGGATAAACGATATTGATGATTTGCT
** ** * * * * **
397152 TTCATAAGAATGGC-TTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAAATGTGAC
64 TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGAC
* ** *
397216 AGACATGGATTGTAGTAATGATCTTCATTC-
129 AAACATGGATTCCAGTAATGGTCTTCATTCA
* * ** * * * *
397246 TCATTGTGCTTAGGCACTACGAACATATTCTCCTCATTAGGATAAAAGATATTGATGGTTTTTTT
1 T-TTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGAT-G--ATTTG
* * * * * ** * * * * *
397311 TTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTT-TCATGACA-TCAATA-TTCTTCCCTTAAA
62 CTTTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGT--T-AAAGTCAA-AGTTCATGCCTCAAA
* * * **
397372 TAAGGCAAGCATTGATTCTC-GTAACAGTCTTCCACTT--
123 TAAGACAAACATGGATTC-CAGTAATGGTCTT-CA-TTCA
*** * * * * * * * * * * * * *
397409 TTTCAAGATTGGGAACCAAAAATACATTCCTT-TCATTAAGATATATGATATTGACGCTTTGGTG
1 TTTTGTGATTAGGCACTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * *
397473 TCGCAAAAAAAGCATTTCTAT-CAACC-ATTTT-TGATAGTACCAAAGTT--TGTCTCTTAAATA
65 TCGCAAGAAAAGCATTTCT-TCCCACCAATTTTGTTAAAGT--CAAAGTTCATG-C-CTCAAATA
* ** *
397533 AGACAAACAT-GAAT--AGTTATACTAATCCTCATTC-
125 AGACAAACATGGATTCCAG-TA-A-TGGTCTTCATTCA
* * ** * * * * * *
397567 TTTTTTGGATTAGGCACCATAAATTTAGTCTTTTCATAAGGATACACGATATTGATGTTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * **
397632 TCGTAAG-AAAGC-TTCCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTG-CT
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGAC-
* * * *
397694 GAACATGCATTCTAGTAATGATCTTCATTCA
129 AAACATGGATTCCAGTAATGGTCTTCATTCA
** * * * * * ** * **
397725 CGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGGATGATTTTTTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * * * ** * ** * * * * *
397790 TGCATGAAAATCTTTTCTTTGC-TCTTTTTTCCTTAAAATCAAAGTTC-CGTCCTTAAATAAGGC
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATG-CCTCAAATAAGAC
* * ** ** *
397853 AAGCATAGATTCTTGTAACAGT-TTCCACTC-
129 AAACATGGATTCCAGTAATGGTCTT-CATTCA
* * * * * * *** * * * *
397883 TTTTCGAGATTGGGAACAAAAAACACATTCCTT-TCATTAGGATACGTGACATTGACGCTTTGAT
1 TTTT-GTGATTAGGCACTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCT
* * * ** * * *
397947 GTT-ACAAGAAAAGCATCTCTTCCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAAA
64 -TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATG-C-CTCAAATA
* * * **
398008 AGACAAACATGAGTAGTCACACTAAT--CCTT-ATTTG
125 AGACAAACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * * * * * *
398043 TTTT-TGGATTAGGCACCATAAACTTAGTCTTCGCATAAGGATACACGATATTAACGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
** * * * * ** * **
398107 TCATAAGAAAGGC-TTTCTTCCCACCAAATTTATTAAAGTCTAAGTTCGGGCCTCAATTGTGACA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * *
398171 AACAAGGATTCTAGTAGTGGTCTTCATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
* * * * * *
398201 TTTTGTGATTAGGCACTGTAAACGTATTCTTCTCATTAGGATATATGATGTTGATGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * * * * ** * * * * * * * *
398266 TGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCA
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * *
398330 AGCATTGATTCGC-GTAATGGTCTCCACTT--
130 AACATGGATTC-CAGTAATGGTCTTCA-TTCA
* * * * * * ** ** *** *
398359 TTTTCGAGATTGGGAATTGATAACACA-GTCCTT-TCATTAGGATACGCGGCATTGACCCTTTGA
1 TTTT-GTGATTAGGCACT-ATAA-ACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGC
* * * * * * * *
398422 TGTCTCAAGAAAAGCATTTTTTCCAACCAATTTTGATAGAA-TCAAAGTT-TTTCTCTTAAATAA
63 TTTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATGC-CTCAAATAA
* * ** *
398485 GACAAACATGAATAGT-CA-TACTAATCCTCATTC-
126 GACAAACATGGAT--TCCAGTAATGGTCTTCATTCA
* * * * * * * * *
398518 TTTTTTGGATTAGGCACTGTAAACTTAGTCTTTTCATAAGGATACACGATATTGATGTTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * * **
398583 TCGTAAG-AAAGC-TTCCATCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTG-CT
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGAC-
* * * *
398645 GAACATGCATTCTAGTAATGATCTTCATTCA
129 AAACATGGATTCCAGTAATGGTCTTCATTCA
** * * * * * ** * *
398676 CGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGGATGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * * * ** * ** * * * * *
398741 TGCATGAAAATCTTTTCTTTGC-TCTTTTTTCCTTAAAATCAAAGTTC-CGTCCTTAAATAAGGC
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATG-CCTCAAATAAGAC
* * ** ** *
398804 AAGCATAGATTCTTGTAACAGT-TTCCTCTC-
129 AAACATGGATTCCAGTAATGGTCTTCAT-TCA
* * * * * * *** * * * *
398834 TTTTCGAGATTGGGAACAAAAAACACATTCCTT-TCATTAGGATACGTGACATTGACGCTTTGAT
1 TTTT-GTGATTAGGCACTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCT
* * * ** * * *
398898 GTT-ACAAGAAAAGCATCTCTTCCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAAA
64 -TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATG-C-CTCAAATA
* * * **
398959 AGACAAACATGAGTAGTCACACTAA---TCCTCATTTG
125 AGACAAACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * * * * * *
398994 TTTT-TGGATTAGGCACCATAAACTTAGTCTTCGCATAAGGATACACGATATTAACGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
** * * * * **
399058 TCATAAGAAAGGC-TTTCTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTTTGACA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
*
399122 AAAATGGATTCCAGTAATGGTCTTCATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
* * *
399152 CTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * ** * * * * * * *
399217 CGCAAGAAAATCTTTTCTTTGC-CCAATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCA
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * ** ** * * *
399281 AGCATTGATTCTTGTAACAGTC-CCTACTCT
130 AACATGGATTCCAGTAATGGTCTTC-ATTCA
* * * * * * * * * *
399311 TTTTGAGATT-GGGAATGAAAAACACATTCCTT-TCATTAGGATACACGACATTGACGCTTTGAT
1 TTTTGTGATTAGGCACT-ATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCT
* * ** * * *
399374 GTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAA-TCAAAGTTTAT-CTCTTAAATAAG
64 TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATGC-CTCAAATAAG
* * * *
399437 GCAAACATGAGTACTCACACTAA---TCCTCATTC-
127 ACAAACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * * * *
399469 TTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * * * *
399534 TCGTACA-AAAGGC-TTTCTTCCCCCCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTATGAC
65 TCGCA-AGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGAC
* *
399597 AAACATGGATTCTAGTAGTGGTCTTCATTCA
129 AAACATGGATTCCAGTAATGGTCTTCATTCA
* * * * *
399628 TTTTGTGATTAGGCATTATAATCGTATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* ** * *** ** * * ** * * * * * *
399693 GGCTTGGAAATTTTTTCTTTGC-CCTATTTTCCTTAAAAACAAATTTAATTTCGT-AAATGAGGC
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCA-TGCCTCAAATAAGAC
* * * * * *
399756 AAGCATTGATTCTCA-TAACGGTCTCCACTCT
129 AAACATGGATTC-CAGTAATGGTCTTCATTCA
* * * * ** * * * *** *
399787 TTTTGAGATTAGGAACCGA-AAGCACGTTCCTT-TCATTAGGATACACAACATTGACCCTTTGAT
1 TTTTGTGATTAGGCA-CTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCT
* * * * * **
399850 GTCGCAAGAAAAGCATTTCTTCCAACCATTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATGG
64 TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATG-C-CTCAAATAA
* * * *
399912 GGCAGAA-ATGAGTAGTCACACTAA---TCCTCATTC-
126 GACA-AACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * * * *
399945 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * * * * * **
400010 TCGTAAGAAAGGC-TTTCTTCCCGCTAATTTTGGTAAACTCTAAGTTCATACCTCAATTGTGACA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * *
400074 AACATGGATTCTAGTAACT-ATCTTCAATCA
130 AACATGGATTCCAGTAA-TGGTCTTCATTCA
* * * * * *
400104 TTTTGTGATTAGGCACTACAAACGTATTCTTCTTATTAGAATAAATGATATTGATGGTATT-CTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGAT-TTGCTT
* * * * * ** * * * *
400168 TTGC--G---TGGA---CTT-GC-CCTATTTTCCTAAACTCCAATGTTCA-GCCTTTAAATAAGG
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGT-CAAAGTTCATGCC-TCAAATAAGA
* ** * * *
400222 CAAGCATTAATTCTC-GTAATAGTCTCCACTC-
128 CAAACATGGATTC-CAGTAATGGTCTTCATTCA
* * * * * * ** * * * * *
400253 TTTTCGAGATTGGGAACCGA-AAACACATTCCTT-TCTTTAGGATACGCGACATTGACGCTGTGA
1 TTTT-GTGATTAGGCA-CTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGC
** * * ** ** * * *
400316 TGGCACAA-AAAAGCTTTTCTTCGAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAAA
63 TTTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATG-C-CTCAAATA
* * *
400377 AGACAAACTTGAGTAGTCACACTAAT--TC-TCATTC-
125 AGACAAACATG-G-ATTC-CAGTAATGGTCTTCATTCA
* * * * * * * * * * *
400411 TTTTATGGATTAGGCACCATAAGCTTAGTCTTCTTATAAGGATACACGACATTGATGGTTTGGTT
1 TTTTGT-GATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * * ** *
400476 TCGTAAGAAAAGC-TTTCTTCCCACCAATTTGGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* ** *
400540 AACGTGGATTGTAGTAATGATCTTCATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
* * * * * *
400570 CTTTGTGATTAGGCACTATAAACAAAGTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
* * * *** ** ** * * * * *
400635 TGCATGGAAATTTTTTCTTTGC-CTTATTTTCCTTAAAATCAAA-TTCATCCCTTAAATAAGGCA
66 CGCAAGAAAAGCATTTCTTCCCACCAATTTT-GTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
* * * ** * *
400698 AGCGTTGATTCTC-GTAACAGTCTCCACTC-
130 AACATGGATTC-CAGTAATGGTCTTCATTCA
*** * * * * * * * * * * *
400727 TTTTCAACATTAGGAACCAAAAACACATTCCTT-TCATTAGTACATATGACATTGATGCTTTGGT
1 TTTT-GTGATTAGGCACTATAAACATATT-CTTCTCATTAGGATAAACGATATTGATGATTTGCT
* * * * * * ** * *
400791 GTCGTAAAAAAAGCGTTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTAAAATAA
64 TTCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTA-AAGTCAAAGTTCATG-C-CTCAAATAA
* * ** * *
400853 GACAAACATGAATAGT-CA-TACTAATCCTCATTCT
126 GACAAACATGGAT--TCCAGTAATGGTCTTCATTCA
* * * * * * * * * *
400887 TTTTAG-GATTAGGCACCATAAACCTAGTCTTCTCATAAGGATAGACAACATTGAAGCTTTGGTT
1 TTTT-GTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTT
* * * * * * * *
400951 TCGTAAGAAAGGC-TTTCTTCCCACCAA-TTTGGTAAAGTCTATGTTCGTGCCTCGAATATGACA
65 TCGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACA
** * *
401014 AACATGGATTGTAGTAATGATCTTTATTCA
130 AACATGGATTCCAGTAATGGTCTTCATTCA
** * * * * * *
401044 CGTTGTGATTGGGCACTATGAACATATTCTCCTCATTATGATAAATGATATTGATGATTTACTTT
1 TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
401109 TGCATGGAAA
Statistics
Matches: 4263, Mismatches: 1603, Indels: 723
0.65 0.24 0.11
Matches are distributed among these distances:
148 14 0.00
149 22 0.01
150 119 0.03
151 42 0.01
152 1 0.00
153 5 0.00
154 4 0.00
155 41 0.01
156 161 0.04
157 466 0.11
158 1302 0.31
159 1724 0.40
160 197 0.05
161 61 0.01
162 95 0.02
163 7 0.00
164 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (159 bp):
TTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAACGATATTGATGATTTGCTTT
CGCAAGAAAAGCATTTCTTCCCACCAATTTTGTTAAAGTCAAAGTTCATGCCTCAAATAAGACAA
ACATGGATTCCAGTAATGGTCTTCATTCA
Found at i:403126 original size:61 final size:60
Alignment explanation
Indices: 402869--403345 Score: 406
Period size: 62 Copynumber: 7.8 Consensus size: 60
402859 GTGGCAACGC
** * * * * *
402869 CTTTTT-TTTTAAAGGCCACACGAGTTGGTGGCACCTTTTGGTCCTTAAAGAGCAAGACG
1 CTTTTTCTTTTAAAACCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
* * * * * *
402928 TCTTTTTCTTTTCAAAGCCCACACAAGCTAGTGGCACTTTTTTAGTCCTCAAAAAGCAGGGTG
1 -CTTTTTCTTTT-AAAACCCACACAAGTTGGTGGCAC-CTTTTAGTCCTCAAAGAGCAGGATG
* * * * *
402991 CTTTTCCTTTTCAAAGCCCACACAAGTTGATGGCAGCTTTTTAGTCCTCAAAGAACAAGGCA--
1 CTTTTTCTTTT-AAAACCCACACAAGTTGGTGGCA-CCTTTTAGTCCTCAAAGAGC-AGG-ATG
* *
403053 CTTTTTCTTTTTAAAAACCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATG
1 CTTTTTC-TTTTAAAACCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
* * * * * *
403114 CATTTTTCTTTTAAAACCCACACGAGCTGGTGGCACATTTTAGTCCTTAAAAAGCATGATG
1 C-TTTTTCTTTTAAAACCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
* * * * *
403175 CTTTTTTCTTTCAAAGCCTACACAAGCTGGTGGCACCTTTTTAGTCCTCAATGAGCAGGATG
1 C-TTTTTCTTTTAAAACCCACACAAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGATG
* * * * * * * *
403237 CCTTTT-TTTTGAAGCCCACATAAGTTAGTGGCACCTTCTAGTCCTCAAAGAGTAGGACG
1 CTTTTTCTTTTAAAACCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
* * * * * *
403296 C-CTTTCCTTTAAAAGCCCAAATAAGTTAGTGGCACCTTTTAGTGCTCAAA
1 CTTTTTCTTTTAAAA-CCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAA
403346 AATCAGGACA
Statistics
Matches: 343, Mismatches: 61, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
58 3 0.01
59 27 0.08
60 64 0.19
61 102 0.30
62 121 0.35
63 26 0.08
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (60 bp):
CTTTTTCTTTTAAAACCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
Found at i:403182 original size:123 final size:121
Alignment explanation
Indices: 402869--403281 Score: 381
Period size: 123 Copynumber: 3.4 Consensus size: 121
402859 GTGGCAACGC
* * * *
402869 CTTTTT-TTTTAAAGGCCACACGAGTTGGTGGCACCTTTTGGTCCTTAAAGAGCAAGACG-TCTT
1 CTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACATTTTAGTCCTTAAAAAGC-AGACGCT-TT
* ** * * * *
402932 TTTCTTTTCAAAGCCCACACAAGCTAGTGGCACTTTTTTAGTCCTCAAAAAGCAGGGTG
64 TTTCTTTTTAAAAACCACACAAGCTGGTGGCAC-CTTTTAGTCCTCAAAGAGCAGGATG
* * * * * * *
402991 CTTTTCCTTTTCAAAGCCCACACAAGTTGATGGCAGCTTTTTAGTCCTCAAAGAA-CA-AGGCAC
1 CTTTTTCTTTT-AAAGCCCACACGAGTTGGTGGCA-CATTTTAGTCCTTAAA-AAGCAGACGC-T
* *
403054 TTTTTCTTTTTAAAAACCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATG
62 TTTTTCTTTTTAAAAACCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
* * *
403114 CATTTTTCTTTTAAAACCCACACGAGCTGGTGGCACATTTTAGTCCTTAAAAAGCATGATGCTTT
1 C-TTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACATTTTAGTCCTTAAAAAGCA-GACGCTTT
* * *
403179 TTTC--TTTCAAAGCCTACACAAGCTGGTGGCACCTTTTTAGTCCTCAATGAGCAGGATG
64 TTTCTTTTTAAAAACC-ACACAAGCTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGATG
* * ** * * *
403237 CCTTTT-TTTTGAAGCCCACATAAGTTAGTGGCACCTTCTAGTCCT
1 CTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACATTTTAGTCCT
403282 CAAAGAGTAG
Statistics
Matches: 237, Mismatches: 42, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
121 41 0.17
122 42 0.18
123 76 0.32
124 63 0.27
125 14 0.06
126 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (121 bp):
CTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACATTTTAGTCCTTAAAAAGCAGACGCTTTTT
TCTTTTTAAAAACCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
Found at i:403354 original size:60 final size:59
Alignment explanation
Indices: 403204--403354 Score: 169
Period size: 60 Copynumber: 2.5 Consensus size: 59
403194 ACACAAGCTG
** * * * ** *
403204 GTGGCACCTTTTTAGTCCTCAATGAGCAGGATGCCTTTTTTTTGAAGCCCACATAAGTTA
1 GTGGCACC-TTTTAGTCCTCAAAAATCAGGACGCCTTTCTTTAAAAGCCCAAATAAGTTA
* *
403264 GTGGCACCTTCTAGTCCTCAAAGAGT-AGGACGCCTTTCCTTTAAAAGCCCAAATAAGTTA
1 GTGGCACCTTTTAGTCCTCAAA-AATCAGGACGCCTTT-CTTTAAAAGCCCAAATAAGTTA
*
403324 GTGGCACCTTTTAGTGCTCAAAAATCAGGAC
1 GTGGCACCTTTTAGTCCTCAAAAATCAGGAC
403355 ACTTTCATTT
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
59 24 0.32
60 51 0.68
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (59 bp):
GTGGCACCTTTTAGTCCTCAAAAATCAGGACGCCTTTCTTTAAAAGCCCAAATAAGTTA
Found at i:404250 original size:476 final size:476
Alignment explanation
Indices: 403358--421793 Score: 22572
Period size: 476 Copynumber: 38.8 Consensus size: 476
403348 TCAGGACACT
403358 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
403423 CTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * *
403488 GCAAGCATTGATTCTCGTAACGGTCCCCACTCTTTTCGAGATTGGGAA-AAGAAAACACATACCG
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCA-AAAACACATTCCT
* *** * *
403552 TTCATTAAGATATGCGACATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGATTTT
195 TTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTT
* *
403617 GATATAATCAAAGTCTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
*
403682 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCA
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * * *
403747 TACGAAAGGCTTTCTTCCTAACAATTTTGGTAAAGTCTAAGTTCGTGTCTCAATTGTGACAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
* * *
403812 TGGATTCTATTAGTGGTCTTCA
455 TGGATTCTAGTAATGATCTTCA
403834 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
403899 CTTTTGCATGGGAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAATTTAATTCCTTAACTAAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
*
403964 GCAAGCATTAATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAA-CAGAAAACACATAT-C
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCA-AAAACACAT-TCC
* *** * * ** *
404027 GTTCATTAGGATATGCGATATTGACCCTTTGATGTCGCAAGAAAAGCATTTCTTCCAATTGATTT
194 TTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTT
* * *
404092 TGATAGAATCAAAGTTTGGCTCTTAAGTAAGACAAATATGAGTAGTCACACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* *
404157 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATGTTGATGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * *
404222 ATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTTGGGCCTCAATTGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* * *
404287 ACGGATTGTAGTAATGGTCTTCA
454 ATGGATTCTAGTAATGATCTTCA
* * * * * *
404310 TTCATTTTGGGATTAGGCACTGTAAACGTATTATTCTCATTCA-AATAAATGATATTGATGGTAT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATT-AGGATAAATGATATTGATGATTT
* * * * ** *
404374 TCTTTTGCGTCGAAATCTATTCTTTGCCCTATTTTCC-TAAAATCCAATGTTCAGCCCTTAAATG
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATTCCTTAAATA
* ** * * * * * * *
404438 AGGCAAGTATTGAAACTCATAATAGTCTCCACTCCTTTCGAGATTGGGAACCGAAACCACACTCT
129 AGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCC
* *
404503 TTTCATTAGGATACGTGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAATCGTTTT
194 TTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTT
* * * *
404568 TGATAGAATCAAAGTTTGTCTCCTAAATAAGAGAAACATGAGTAGTCACACCAATCCTTATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
404633 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * *
404698 ATAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAATCTACA-TTCATGCCTCAATTGTGATC-A
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTA-AGTTCGTGCCTCAATTGTGA-CAA
*
404761 ACATGGATTCTAGTAATGGTCTTCA
452 ACATGGATTCTAGTAATGATCTTCA
* *
404786 TTCATTTTATGATTAGGCACTATATACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
404851 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* ** * *
404916 G-AAGCATTGATTCTCGTAATAGTCTCCACTCTTTTCGAGATTGGGAATGAAAAGCAC-TTTCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
*** * *
404979 TCATTAGGATATGCGACATTGATGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAGCCGTTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * * *
405044 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATTAGTAGTCACACTAATCCTTATACTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* *
405109 TTGGATTAGGCACCATAAACTTAG-CTTTCTCATAAGGATACATGATATTGAAGGTTTGGTTTCG
326 TTGGATTAGGCACCATAAACTTAGTC-TTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* *
405173 TACGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTTTAAGTTCGTGCCTCAATTGTGACAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
** *
405238 TGGATTCTAGTCGTGGTCTTCA
455 TGGATTCTAGTAATGATCTTCA
* *
405260 TTCATTTTGTGATTAGGCATTATAAACGTATTCTTCTTATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
405325 CTTTTGCATGAAAATTTTTTCTTTGCCCTA-TTTCCTTAAAATCAAA-TTCATCCCTTAAATATG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * *
405388 GCAAGCATTGATTCCCGAAACAGTCTCCACTCTTTTCAACATTGGGAACCAAAAATACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * * *
405453 TCATTAGGATATATGACATTGACGCTTTGGTCTCGCAAAAAAAGCATTTCTTTCAACCATTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
*
405518 -TCA-ATATCAAAGTTTGTCTC-----TAA-AC---C---A--A--CATACTAATCCTCATTCTT
261 AT-AGA-ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* * * * * * * *
405565 TTTTAGATTAGGCATCATAAACATAGTTTTGTCTTAAGGATACACGATATTGAAGCTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * * *
405630 GTAAGAATGGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCATGCCTCAAATGTGACAGAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* *
405695 ATGGATTGTAGTAATGATCTTCT
454 ATGGATTCTAGTAATGATCTTCA
** * * * ** *
405718 TTCACATTGCGCTTAGGCACCACGAACATATT-TTCCTCATTAGGATAAATGATATTGATGAATT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTT-CTCATTAGGATAAATGATATTGATG-ATT
* **
405782 TT-TTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGACGTC-AATATTC-TTCCCTTAA
64 TTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATT-CCTTAA
* *
405844 ATAAGGCAAGCATTGATTCTCGTAACAGTCTTCCACT-TTTTCAAGATTGGGAACCAAAAAGACA
126 ATAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACA
* * * * * * *
405908 TTCTTTTCATTAAGATATATGACATTGACGCTTTGGTATCACAAAAAAAGCATTTCTAT-CAACC
190 TTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACC
* * * ** * *
405972 GTTTTTGATAGTACCAAAGTTTATCTCTTAAATAAGATGAACATGAATAGTCATACTAATCCTCA
254 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCA
* * * * *
406037 TTCTTTTTCGTATTAGGCACCATAAACTTAGCCTTTTCATAAGGATACACGATATTGATGCTTTG
319 TTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTG
* * * * *
406102 GTTTCATAAGAAA-GCTTCCTT-CCACCAATTTTGG-GAAGTCTAAGTTCGTGCCTCAAATGTGC
384 GTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGA
* * *
406164 CGAACATTGATTCTAGTAATGATCTTTA
449 CAAACATGGATTCTAGTAATGATCTTCA
** * * * * * * *
406192 TTCACGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAGTGATATGGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * *
406257 CTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCCTTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * *
406322 GCAAGCATTGATTCTCGTAACAGTTTCCATTCTTTACAAGATTGGGAACGAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
*** * * **
406387 TCATTAGGATATGCGACATTGATGCTTTGATGTCACAAGAAAAGCAACTCTTCCAACCGTTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* *
406452 ATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATCCTCATTCATTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* * * * * *
406517 TTGGATTAGGCACCATAAACTTAGTCTTTTCGTAAGGATAAAAAATGTTGATGGATTGGTTTGGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT---ACACGAT-ATTGA-TGGTTTGGT
* * * * *
406582 TTCGTAAGAATGACTTTCTTCCTACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAATTGTGGCA
386 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACA
*
406647 AACATGGATTCTAGTAATGGTCTTCA
451 AACATGGATTCTAGTAATGATCTTCA
* * * * *
406673 TTCACTTTATGATTAGGCACTATAAACATATTCTTCTTATTAGGATAAAAGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* ** * *
406738 CTTTTGCATGAAAATCTTTTCTTTGTGCAATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * **
406803 GCAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAAGATTAGGAATGAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
** ** *
406868 TCATTAGGATACGCGACATTGATACTTTGATGTCGCAAGAAAAGCATTTCTTCCAACAGTTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* *
406933 ATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGTAGTCACACTAATTCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* *
406998 TTGGATTAGGCACCAAAAACTTAGTTTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * ** *
407063 AAGAAAAGCTTTCTTCCAACCAATTTTGGTAAAGTCTAAGTTTGCACCTCAATTATGGA-AAACA
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGT-GACAAACA
407127 TGGA-TCGTAGTAATGATCTTCA
455 TGGATTC-TAGTAATGATCTTCA
* * ** * * *
407149 TTCACTTTGTGATTAGGCAATATAAACAAAGTCTCCTCATGAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGA-TTT
* * * *
407214 TTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTCAAAATCAAA-TTCATCCCTTAAATAA
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAA
* * * * * * *
407278 GGTAAGCGTTGATTCTTGTAACAGTCTCCACTCTTTTCAACATTGGGAACCGAAAACACTTTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
* * * * * * * * *
407343 TTCATTAGGACATAAGACATTGATGCTTTGGTGTCGTAAAAAAAGCATTTTTTTCAACCGTTTTT
195 TTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTT
* * * * *
407408 GATAGAATCAAGGTTTGTCTCTAAAATAAGACAAACATGATTAGTTATACTAATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
* * * * *
407473 TTAGGATTAGGCACCATAAACCTAGACTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* *
407538 TAAGAAAGGCTTTCTTCCCGCCAATTTTGGTAAAGTCTATGTTCCG-GCCTCGAA-TGTGACAAA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTT-CGTGCCTC-AATTGTGACAAA
* *
407601 CATGGATTGTAGTAATGATCTTTA
453 CATGGATTCTAGTAATGATCTTCA
* * ** * *
407625 TTCATGTCGTGATTAGGCACTACGAACATATTCTCCTCATT-GTGATAAATGATATTGATGATTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAG-GATAAATGATATTGATGATTT
* * * * * *
407689 ACTTTTGCATAGAAATCTTTTCTTTACCCTATTTTTCCATGACATCAATATTT--TTCCCTTAAA
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAA-ATTTCATT-CCTTAAA
* ** * * *
407752 TAAGACAAGCATTGATTCTCGCCACAGTCTTCC-CTCTTTTCAAGATTGGGAACCAAAAAAAAAT
127 TAAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACAT
* * *
407816 TCCTTTCATTAAGATATATGACATTGACGCTTT-AGTGTCGCAAAAAAAGCATTTCTAT-CAACC
191 TCCTTTCATTAGGATACATGACATTGACGCTTTGA-TGTCGCAAGAAAAGCATTTCT-TCCAACC
* * * * * * * * *
407879 GTTTTTTACAGTACCAAAATTTGTCTTTTAAATAAGACAAACATGAATAGTCATACTAATCTTCA
254 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCA
* * * *
407944 TTCTTTTTTGGATTAGGCACCATATACTTAGTCTTCTCATAACGATACATGATATTGATGCTTTG
319 TTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTG
* * * * *
408009 GTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTATAGTCTACGTTCGTGCCTCAAATGTGA
384 GTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGA
* *
408074 CAAACATTTGATTCTAGTAATGATCATCA
449 CAAACA-TGGATTCTAGTAATGATCTTCA
* * * * *
408103 TTCACTTTGTGATTAGGCAGTATAAACTTATTC-TCTTATTAGTATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
408167 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * *
408232 GCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTTCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* ** * ** *
408297 T-TTTCAGGATACGCGACATTGATGCTTTGATGTCGCAAGAAAAGCATTTCGCCCAACCGATTTT
196 TCATT-AGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTT
* *
408361 GATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCAAACTAATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
** * *
408426 CCTGGATTAGGCACCATAAACCTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTTG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * *
408491 TAAGAATGACTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
*
408556 TGGATTCTAGTAATGGTCTTCA
455 TGGATTCTAGTAATGATCTTCA
* * * *
408578 TTCACTTTGTGATTAGGCACTATAAACATATTTTTCTCATAAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
408643 CCTTTGCATGGAAATCTTTT-TCTGACCAATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * * *
408707 GCAAGTATTGATTCTTGAAACAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* ** *
408772 TCATTAGGATAGGCA--ACATTGATGCTTTGATGTCATAAGAAAAGCATTTCTTCTAACCGTTTT
196 TCATTAGGATA--CATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTT
* *
408835 TGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTGACACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* * *
408900 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACATGATAGTGATGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * *
408965 GTGAGAAAGGCTTTCTTCCCGCCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGGCAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
*
409030 ATGGATTGTAGTAATGATCTTCA
454 ATGGATTCTAGTAATGATCTTCA
* * * ** * *
409053 TTTACTTTGTAATTAGGCACTATAAACAAAGTT-TCCTCATCAGGATAAATGATATTGATGATTT
1 TTCATTTTGTGATTAGGCACTATAAACGTA-TTCTTCTCATTAGGATAAATGATATTGATGATTT
* * * * *
409117 TATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAA-TTCATCCCCTAAAAAA
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAA
* * * *
409181 GGCCAGCATTGATTCTTGTAACAGTCCCCACTCTTTTCGACATTGGGAACCAAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
* * * * * * * **
409246 TTCATTAGGATATATGACATTGATGCTTTGGTGTTGTAAAAAAAGCACTTTCTTTCAACTATTTT
195 TTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCA-TTTCTTCCAACCGTTTT
* * * * *
409311 TGATAGAATCAAAGTTTATCTCTAAAATAAGGCAAACATGAATAGTCATACTAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* * * * *
409376 TTTAGGATTATGCACCATAAACTTAGACTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * * * * *
409441 ATAAGAAAGGTTTTCTTCCCACCAATTTTGGCAAAGTCTATGTCCGTGCCTCAAATGTGGCAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
*
409506 ATGGATTGTAGTAATGATCTTCA
454 ATGGATTCTAGTAATGATCTTCA
** * ** * * * *
409529 TTCACGTTGTGATTGGGCACTACGAACATATTCTCCTCATTATGATAAATGATATTGAAGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
409594 CTTCTT--A--AAAATTTTTTCTTTGCCCTATTTTCCATGACATC-AATATTC-TTCCCTTAAAT
66 CTT-TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATT-CCTTAAAT
* * * *
409653 AAGGCAAGCATTGATTCTCGTAATAGTCTTCC-CTCTTTTCAAGATTTGAAACCAAAAACA-ATT
128 AAGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACATT
* * * * * *
409716 CCTTTCATTAAGATATATGACACTGACGCTTTGGTGTCGTAA-AAAAGCATTTCTAT-CAACCAT
192 CCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACCGT
* * * * *
409779 TTTTGATAGTAGCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATT
256 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATT
* * *
409844 CTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAATGATACATGATATTGATGCTTTGGT
321 CTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGT
* * * * **
409909 TTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCATGCCTCAAACGTGACA
386 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACA
* * *
409974 AACATGGACTCTAGTAATGATCATCT
451 AACATGGATTCTAGTAATGATCTTCA
*** * * * *
410000 TTCACAATGTGATTAGGCAGTATAAACTTATTC-TCTTATTAGGATAACTGATA-TGTATGATTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTG-ATGATTT
* *
410063 TCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTT-ATTCCTTAAATA
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTTCATTCCTTAAATA
* * *
410127 AGGCAAGCATTGATTCTCATAACAGTCTCCACTTTTTTTGAGATTGGGAACCAAAAACACATTCC
129 AGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATT-C
* ** ** * *
410192 CTTT-TTTAGGATACGCGACATTGACTTTTTGATATCGCAAGAAAAGCTTTTCTTCCAACCGTTT
193 CTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTT
*
410256 TTGATAGAATCAAATTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCT
* *
410321 TTTTTGGATTAGGCACCAT--A---AGTCATCTCATAAGGATACACGATATTGACGGTTTGGTTT
323 TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTT
* * * * * *
410381 TGTAAGAAA-GCTTCCTTCCTACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAACTGTGCCAAA
388 CGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAA
* *
410445 CATGGATTCTAATAAAGATCTTCA
453 CATGGATTCTAGTAATGATCTTCA
* ** * * * * *
410469 ATCAAGTTGTGATTACGCAGTATAAACTTATTCTCCTCCA-TAGGATAAATGATATGGATGATTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCT-CATTAGGATAAATGATATTGATGATTT
* * *
410533 TCTTTTGCATGGAAATCTTTTCTTTGGCTTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAA
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAA
* * * *
410598 GGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGGGATTGGGAACCAAAAACACATTCTT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
** * * * *
410663 TTTTTTAGGATACACGACATTGATGCTTTGATGCCGAAAGAAAAGCATTTCTTCCAACCGTTTTT
195 TTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTT
* * *
410728 GATAGAATAAAAGTTTGGCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCA-TATTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
* * * * *
410792 ATTGGATTAGGCACCATAAACATAGTCTTCTCATACGGATGCACGATATTGATGGTTTGGTTCCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* ** * *
410857 TATGAAAGGCTTTCTTCCCACCAATTTCAGAAAAGTCTAAGTTCGTGCCTCAATTATGACAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
* **
410922 TGGAATCTAGTAGCGATCTTCA
455 TGGATTCTAGTAATGATCTTCA
* * *
410944 TTCATTTTGTGATTAGGCACTATAAATGTATTCTTCTCATTAGGATAAATGATGTTGATGGTTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
411009 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAAAAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * * *
411074 GCTAGCATTGATTCTCGTAACGGTTTCCACTCTTTTCGTGATTGAGAACCAAAAACACATTCTTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * *
411139 TCATTAGGATACGTGACATTGACCCTTTGATGTCGCAAGAAATGCATTTCCTCCAACCGATTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * * *
411204 ATTGAATCAAAGTTTGCCTCTTAAATAAGACAAAAATGAGTAGTCACACTAATCCTTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* * * *
411269 TTGGATTAGGCACCATAAACTTAGTCTTCTCTTAAGGATACAAGATATTGGTGGTTTGGCTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* ** *
411334 AAGAAAGGCTTACTTCCCATGAATTTTGGTAAAGTCTAAGTTCGGGCCTCAATTGTGACAAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
*
411399 GGATTCTAGTAATGGTCTTCA
456 GGATTCTAGTAATGATCTTCA
* * * * * * *
411420 TTCATTTTGTGATTAGGCAGTCTAAACGTATTCTTCTCATTCGGATAAATGATGTTAATGGTATT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
411485 CTATTGCATGGAAATCTATTCTTTGCCCTATTTTCC-TAAAATGC-AATGTTCA-ACCTTTTAAT
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAT-TTCATTCC-TTAAAT
* * * * * ***
411547 AAGGCAAGTATTGATTCTCGTAATAGTCTCCACTCTTCTCGAGAATAGGAATTGAAAACACATTC
128 AAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTC
* * * * * *
411612 TTTTCATTAGGGTACATGACATTGATGCTTTGATGTCGCAAGAAAATCACTTCTTCTAACCGTTT
193 CTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTT
** * *
411677 TTGATAGAATCAGTGTTTGTCTCTTAAATAAGAGAAACATGAGTAGTCACACCAATCCTCATTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCT
411742 TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTT
323 TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTT
* * *
411807 CGTAAGAAAGGCTTTCTTCCCACCGATTTTGGTAAAATCTAAGTTCGTGCCTCATTTGTGACAAA
388 CGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAA
411872 CATGGATTCTAGTAAT-AGTCTTCA
453 CATGGATTCTAGTAATGA-TCTTCA
*
411896 TTCATTTTGTGATTAGACACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
411961 TTTTTGCATGGAAATCTTTTCTTTGACCTATTTTCCTTGAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
*
412026 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* *
412091 TCATTAAGATACATGACATTGATGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * * *
412156 ATAGAATCAAAGTTTGTCTCTTAAAAAAGGCAAACATGAGTAGTCACACAAATTCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* *
412221 TTGGATTAGGGACCATAAACTTAGTCTTCTCATAAGGATACACGATACTGATGGTTTGGTTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * *
412286 ACGAAAGGCTTTCCTCCCACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* *
412351 GGATTCTAGTAGTGGTCTTCA
456 GGATTCTAGTAATGATCTTCA
412372 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
*
412437 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCATCCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * * *
412501 GCAAGCATTGATTCCCGTAACAGTCTTCACTCTTTCCAACATTGGGAACCAAAAAAACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * ** * * *
412566 TTATTAGGATATATGACATTGACGCTTTGGTATCATAAAAAAAGCATTTCTTTCAACTGTTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
*
412631 ATA-ATATCAAAGTTTGTCTCTAAAATAAGAGC-AAC------A-T---ACTAATCCTCATTCTT
261 ATAGA-ATCAAAGTTTGTCTCTTAAATAAGA-CAAACATGAGTAGTCACACTAATCCTCATTCTT
*
412684 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * * *
412749 ATAAGAAAGGCCTTCTTCCCACCAATTTTGGTAAAATCTAAGTTCGTGCCTTAATTGTGACAAAC
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
*
412814 ATGGATTCTAGTAATGGTCTTCA
454 ATGGATTCTAGTAATGATCTTCA
* * * * ***
412837 TTCATTTTGTGATTAGGGATTGTAAACGTATTCTTCTCAATAGGATAAATGATATTGATGGCATT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * ** *
412902 CTTTTACATGGAAATCTATACTTTGCCTTATTTTCC-TAAAATCCAATGTTCAGCCCTTAAAAAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATTCCTTAAATAA
* * *
412966 GGCAAGCATTGATTCTTGTAACAATCTCCACTCTTTTCGAGATTGGGAACCAAAAACATATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
* * * *
413031 TTCATTAGGATACATGACATTGACGCTTT-AGTGTTGCAAAAAAAGCATTTCTTTCAACC-ATTT
195 TTCATTAGGATACATGACATTGACGCTTTGA-TGTCGCAAGAAAAGCATTTCTTCCAACCGTTTT
** *
413094 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCACACAAATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTT
* * *
413159 TTTTGGATTAGGCACCATAAACTTAGTCTTGTCATAAGCATACACGATATTGACGGTTTGGTTTC
324 TTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTC
* * *
413224 GTAAGAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCTTGCCTCAGA-TGTGCCAAA
389 GTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCA-ATTGTGACAAA
*
413287 CATGGATTCTACTAATGATCTTCA
453 CATGGATTCTAGTAATGATCTTCA
* * * * * * *
413311 TTCATGTTGTGATTAGGCAGTATACACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
413376 CTTTTGCAAGGAAATCTTTTCTTTGCCCTATTTTCCATGACATC-AATATTC-TTCTCTTAAATA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATTC-CTTAAATA
* * * * *
413439 AGGCAAACATTGATTCTCATAACAGTCTTCC-TTTTTTTCAAGATTGGGAACCAAAAACACATTC
129 AGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACATTC
* * * * * *
413503 CTTTCATTAAGATATATGACATTGACGCTTTGGTCTCGCAAAAAAAGCATTTCTAT-CAATCGTT
193 CTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACCGTT
* * * ** ** *
413567 TTTGATAGTACCAAAGTTTGTCTCTTAAATAAGATAAACATGAAAAGTCACAAAAATCCGCATTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* *
413632 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATTGACGGTTTGGTT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
** * * * *
413697 TCGTAAGAAA-GCTTTCTTTCTGACCAATTTTGGTAAAGTCTATGTTCTTGCCTCAAATGTGCCA
387 TCGTAAGAAAGGCTTTC-TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACA
* *
413761 AACATGGATTCTACTAATGAACTTCA
451 AACATGGATTCTAGTAATGATCTTCA
* * * * * * *
413787 TTCATTTTGTGGTTAGGCACTACAAACGTATTCTTCTCATTAGAATAATTGATATTCATGGTATT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * * **
413852 CCTTTGCGTGGAAATCTATTCTTTGCCCTATTTTCC-TAAAATCCATTGTTTAGCCCTTAAATAA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATTCCTTAAATAA
* ** *
413916 GGCTAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACTGAAAATACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
* * * * *
413981 TTCATTATGATATATGACATTGATGCTTTGGTGTCGCAAAAAAAGCATTTC-TCTCAACCGTTTT
195 TTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTC-CAACCGTTTT
* *
414045 TGAT--AATGCCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTC
259 TGATAGAAT--CAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* * * * *
414108 TTTTTTTGATTAGGCACCATAAACTTAGTCTTTTCATAATGATACATGATATTGATGCTTTGGTT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * * * * ** *
414173 TTGTAAGAAATGCTTTCTTCCCACCAATTTTGGCAAAGTCTATGTTTGTCCCTCAAAGGTGCCAA
387 TCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAA
414238 ACATGGATTCT-GCTAATGATCTTCA
452 ACATGGATTCTAG-TAATGATCTTCA
** * * * * * *
414263 TTCACGTTCTGATTAGGCAGTACACACCTATTC-TCAT-ATTAGGATAAATGATATGGATGATTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTC-TCATTAGGATAAATGATATTGATGATTT
* * * * *
414326 TCTTTTGC-TAGGGAATCTTTTCTTTGCCCTATTTTTCATAAAATCGAAGTTCATTCCTTAAATA
65 TCTTTTGCAT-GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATA
* *
414390 AGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCC
129 AGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCC
* * ** ** *
414455 TTT-TTTCAAGATACGCGACATTGACATTTTGATGTCGCAAGAAAAGCATTTCTTACAACCGTTT
194 TTTCATT-AGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTT
* * * ** ** *
414519 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACACGAGTAGTCAC-TTTGTTTTCATAAA
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCAT--T
* * ** * * * * *
414583 CTTAGTTTAT-GATAAACGCAAGAAAAACATTCTCATTCTTTTTTGGATTAGGCCCCATAAACTT
321 CTT--TTT-TGGAT-TAGGCACCATAAAC--T-T-AGTC--TTCT-CATAAGG----AT--AC--
* ** * * ** * ***** * *
414647 AGTTTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTC-CCACC
367 A-----C-GATATTGAT----G--GTT--TGGTTTCG-TAAGAAAGGCTTTC-TTC-CCACCA-A
** * * * *
414711 AATTTTGGTAAAGTCTAAGTTTGTGCCTCAATTGTGGCAAACATGGATTGTTGTAATGATCTTCA
414 TTTT--GGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
* ** * * *
414776 TTCACTTTGTGATTAGGCACTATAAACAAAGTCTCCTCATTAGGATAAATGATATTGATGACTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
414841 CTTTTGCGA-GGAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-TTCATCCCTTAAATAA
66 CTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAA
* * *
414904 GGCAAGCATTGATTCTCGTAACAGTCTTCACTCTTTTCAACATTGGGAACCAAAAACACATTCCT
130 GGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCT
* * * * * * * * *
414969 TTTATTAGGACATATGACATTGATGCTTTGGTGTAGTAAAAAAAGCATTTCTTTCAACCGTTTTT
195 TTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTT
* * * * *
415034 GATATAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCTCCTTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
* * * *
415099 TTAGGATTAGGCACCATAAACTTAGACTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * * *
415164 TAAGAAAGG-TTTCTTCTCACCAAATTTGGTAAAGTCTATGTTCGTCCCTCGAA-TGTGACAAAC
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTC-AATTGTGACAAAC
*
415227 ATGGATTGTAGTAATGATCTTCA
454 ATGGATTCTAGTAATGATCTTCA
** * * ** ** ** * *
415250 TTCACGTTGCGATTGGGCACTACGAACAAATTCAGCTCATTATGATAAATGATATCGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * * *
415315 ATTTTGCATGGAAATCTTTT-TTTCACCCTATTTTTCCATGACAT-TAATATT-ATTCCTTTAAA
66 CTTTTGCATGGAAATCTTTTCTTT-GCCCTA-TTTTCCTTAAAATCAAAT-TTCATTCC-TTAAA
* *
415377 TAAGGCAAGCATTGATTCTCGTAATAGTCTTCC-CAT-TTTTCAAGATTGGGAACCAAAAACACA
127 TAAGGCAAGCATTGATTCTCGTAACAGTC-TCCAC-TCTTTTCGAGATTGGGAACCAAAAACACA
* * * * *
415440 TTCCTTTCATTAAGATATATGACATTAACGCTTTGGTGTCGCAAAAAAAGCATTTCTAT-CAACC
190 TTCCTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACC
* * * * **
415504 GTTTTTGATAGTACCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCTTACTAATCCTCA
254 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCA
* * * * *
415569 TTCTTTTTTGGAATGGGCACCATAAACTTAGTCTTCTCATAATGATTCACGATATTGATGCTTTG
319 TTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTG
* * * *
415634 GTTTTGTAAG-AATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAAATGTGA
384 GTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGA
** *
415698 CAAACATGGATTCTAGTAACCATCATCA
449 CAAACATGGATTCTAGTAATGATCTTCA
* * * * *
415726 TTCACTTTGTGATTAGGCAGTATAAACTTATTCTT-TTATTAGGATAAATGATATGGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
415790 TTTTTGCATGGAAATCTTTTCTTTGCCGTATTTTCCTTAGAATCAAAGTTCATTCTTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * *
415855 GCAAGCATTGATTCTTGTAACAGCCTCCACTCTTTTCGAAATTGGGAACCAAAACCACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * *
415920 TCATTAGGATACGTGACATTAACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACC-ATTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * *
415984 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACAAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* * * *
416049 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATTGACGATTTGGTTTCAT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
416114 AAGAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCTTGCCTCAAATGTGCCAAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
*
416178 GGATTCTACTAATGATCTTCA
456 GGATTCTAGTAATGATCTTCA
* * * * * * * * *
416199 TTCATGTTGTGATTAGGCAGTTTACACTTATTCTCCTCCTTAGGATAAATGATATGGACGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
416264 CTTTTGCATGTAAATCTTTTCTTCGCCCTATTTTCCATGACATC-AATATTC-TTCCCTTAAATA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATT-CCTTAAATA
* ** *
416327 AGGCAAGCGTTGATTCTCACAACAGTCTTCC-CTCTTTTCAAGATTGGGAACCAAAAACACATTC
129 AGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACATTC
* * * * * *
416391 CTTTCATTAAGATATATGACATTGACGCTTTGGTGTCGTAAAAAAAGCATTTCTAT-CAACCGTG
193 CTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACCGTT
* * * * * ***
416455 TTTGATAGTACCAAAGTTTATCTCTCAAATAAGACAAACATGAATAGTTGTACTAATCCTCATTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* * *
416520 TTTTTTGGATTGGGCACCATAAACTTAGTCTTCTCATAATGG-TACACAATATTGATGCTTTGGT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAA-GGATACACGATATTGATGGTTTGGT
* * * * * * *
416584 TTTGTAAGAAATGCTTTCTTCCCGCCAATTTTGGTAAAGTTTACGTTCGTGCCTCAAATGTGATA
386 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACA
** *
416649 AACATGGATTCTAGTAACCATCATCA
451 AACATGGATTCTAGTAATGATCTTCA
* * * * *
416675 TTCACTTTGTGATTAGGCAGTATAAACTTATTCTT-TTATTAGGATAAATGATATGGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * *
416739 CTTTTGCATGGAAATCTTTTCTTTGCCCAATTTTCCTTAAAATTAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * *
416804 GCAAGCATTGATTCTTGTAACAGCCTCCACTCTTTTCAAAATGGGGAACCAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * * *
416869 TCATTAGGATACGTGACATTAACGCTTTAATGTCGCATGAAAAGCATTTCTTTCAACC-ATTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
** * *
416933 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCACACAAATCCTCGTTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* * * *
416998 TTGGATTAGGCAGCATAAACTTAGTCTTCTCGTAAGCATACACGATATTGATGGTTTGGTTTCAT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * * *
417063 AAGAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCTTGCCTCAAATGTGCCAAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* *
417127 GGATTCTACTAATGATATTCA
456 GGATTCTAGTAATGATCTTCA
* * * * * * *
417148 TTCATGTTGTGATTAGGCAGTATACACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
417213 CTTTTGCATGCAAATTTTTTCTTTGCCCTATTTTCCATGACATC-AATATTC-TTCCCTTAAATA
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAT-TTCATT-CCTTAAATA
* * * *
417276 AGGCAAGCGTTGATTCTCGCAACAATCTTCC-CTCTTTTCAAGATTGGGAACCAAAAACACATTC
129 AGGCAAGCATTGATTCTCGTAACAGTC-TCCACTCTTTTCGAGATTGGGAACCAAAAACACATTC
* * * * * * *
417340 CTTTCATTAAGAAATATGACATTGATGCTTTGGTGTCGCAAAAAAAGCATTTCTAT-CAATCGTT
193 CTTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCT-TCCAACCGTT
* * * * * *
417404 TTTGATAGTACCAAAGTTCGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCTCATTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTC
* * * * * *
417469 TTTTTTGGGTTAGGCACCATAAACTTTGTCTTCTCTTAATGATACACGATATTAATGCTTTGGTT
322 TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
* * * * * ** *
417534 TTGAAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGCTT-GTCCCTCAAAGGTGCCA
387 TCGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAG-TTCGTGCCTCAATTGTGACA
*
417598 AACATGGATTCTACTAATGATCTTCA
451 AACATGGATTCTAGTAATGATCTTCA
** * * * * *
417624 TTCACGTTGTGATTAGGCAATATACACCTATTC-TCTTATTAGGATAAATGATATGGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* *
417688 CTTTTGCATGGAAAT-TTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * **
417752 GCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCGAGATTGGGAACCGGAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * *
417817 TCATTAGGATACACGACATTGACGCTTTGATGTCACAAGAAAAACATTTCTTCCAACCGTTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
417882 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* * *
417947 TTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCAT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* * *
418012 AAGAATGGCTTTCTTCTCC-CCAATTTTGGTAAAGTCTAAGTTTGTGCCTCAATTGTGACAAATA
391 AAGAAAGGCTTTCTTC-CCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
* *
418076 TGGATTCTAGTAATGGTATTCA
455 TGGATTCTAGTAATGATCTTCA
* *
418098 TTCATTTTGTGATTAGGCACTGTAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
418163 TTTTTGCAT-GAAATCTTTTCTTTGCTCTATTTTCCTTCAAACCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * ** *
418227 GTAAGCATTGATTCTTGTAACAGTCTCCACTTTTTTTGAGATTGGGAATGAAAAGCACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* ** * * * *
418292 TCACTAGGATACGCGACATTGAGGCTTTGATGTGGCAAGAAAAGCATTTCTTCCAACCATGTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * *
418357 ATAGAATCAAAGTTTATCTCTTAAATAGGGCAAACATGAGTAGTCACACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* *
418422 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATATAGGATATTGATGGTTTGGTTTCGT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* ** *
418487 ACGAAAGGCTTTCTTATCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAA
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
* * *
418552 GGATTCCAGTAGTGGTCTTCA
456 GGATTCTAGTAATGATCTTCA
*
418573 TTCATTTTGTGATTAGGCACTATAAACGTAATCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
418638 CTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTAAAATCAAATATAATTCTTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * **
418703 GCAAGCATTGATTCTCGTAACGGTCTCCACTCTTTTCGGGATTAGGAACCAAAAGCACATTTGTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
** * * * *
418768 TCATTAGGATACGCGACATTGACCCTTTGATCTCGCAGGAAAAGCATTTCTTCCAACCGTTTTTC
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * *
418833 ATAGAATCAAAGTTTGTCTCTTAAGTAAGATAAACATGAGTAGTCACACTATTCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
*
418898 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCAT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* *
418963 AAGAAAGGCTTTCTTCCCACCAACTTTGGTAAAATCTAAGTTCGTGCCTCAATTGTGACAAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
*
419028 GGATTCTAGTAATGGTCTTCA
456 GGATTCTAGTAATGATCTTCA
* * * * * *
419049 TTAATTTTGTGATTAGGCTCTATAAACATATTCCTCTCGTTAGGATTAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * ** * * *
419114 CTTTTGCATAGAAAGCTTTTATTTTTCGTATTTTCCTTAAAATCAAATTTAATTCCTTCAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * *
419179 GCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTAGAGATTGGGAACAAAAAACAAATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* ** * * *
419244 TCATTAGGATACACGACATTGATTCTTTGATGTTGCAAGAAAAGCATTTCTTCTAACCATTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * * *
419309 ATAGAATCAAAGTTTATCTCTTAATTAAGATAAACATGAGTAGTCACACTATTCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
*
419374 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCAT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
* *
419439 AAGAAAGGCTTTCTTCCCACCAACTTTGGTAAAATCTAAGTTCGTGCCTCAATTGTGACAAACAT
391 AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
*
419504 GGATTCTAGTAATGGTCTTCA
456 GGATTCTAGTAATGATCTTCA
* * * * * *
419525 TTAATTTTGTGATTAGGCTCTATAAACATATTCCTCTCGTTAGGATTAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * ** * * *
419590 CTTTTGCATAGAAAGCTTTTATTTTTCGTATTTTCCTTAAAATCAAATTTAATTCCTTCAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * *
419655 GCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTAGAGATTGGGAACAAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* ** * * * *
419720 TCATTAGGATACACGACATTGATTCTTTGATGTTGCAAGAAAAGCATTTTTTCTAACCATTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* *
419785 ATAGAATCAAAGTTTATCTCTTAATTAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
419850 TTGGATTAGGCACCATAAACTTAGTCCTT-TCATAAGGATACACGATATTGATGGTTTGGTTTCG
326 TTGGATTAGGCACCATAAACTTAGT-CTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * * *
419914 CACGAAAGGCTTTCTTCCCACCAATATTGGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
* *
419979 TGGATTCTAGTAGTGGTCTTCA
455 TGGATTCTAGTAATGATCTTCA
*
420001 TTCATTTTGTGATTAGGCATTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * *
420066 CTTTTGCGTGGAAATCTTTTCTTTGCTCTATTTTCCCTAAAATCAAATTTAATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * *
420131 GCAAGCATTGATTCTTGTAACAATCTCCACTCTTTTTGAGATTGGGAACCAAAGACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * *
420196 TCATTAGGATA-AGTGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTCTAACCATTTTT
196 TCATTAGGATACA-TGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTT
* * * *
420260 GACAAAATCAAAGTTTGTCTCTAAAATAAGACAAAC------A-T---ACTAATCCTTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
* *
420315 TTTGGATTAGGCACCATAAACTAAGTCTTCTCATATGGATACACGATATTGATGGTTTGGTTTCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * *
420380 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAATTATGGCAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
*
420445 TGGATTGTAGTAATGATCTTCA
455 TGGATTCTAGTAATGATCTTCA
* * * * ** * * *
420467 TTTACTTTGTGATTAGGCACTTTAGACAAAGTCTCCTCATTAAGATAAATGATATTGATGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
* * * * *
420532 CTTTTTCATAGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAA-TTCCTCCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * * * * *
420596 GCAAACATTGATTCTCGCAACAGTCTCCACTCTGTTCAATATTGGGAACCAAAAATAGATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * ** * * *
420661 TCATTAGGATATATGACATTGACGCTTTGGTGTCATAAAAAAAGCACTTCTTTCAACCGTTTTTT
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCG-TTTTT
* * * * ** * * *
420726 AACAAAATTAGGGTTTGTCTCTAAAATAAGACAAAC------A-T---ACTAATCTTCAATC-TT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
* * * * *
420780 TTTGGATTAGGCACTATAAACTTAGTTTTCTCACAAGGATACACGATATTGAAGCTTTGGTTTCG
325 TTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCG
* * * * * *
420845 TAAGAAAAGCTTTCTACCCACCAATTTTGGTAAAGTCTATGTTTGTGCCTCAAATGTGGCAAACA
390 TAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
*
420910 TGGATTGTAGTAATGATCTTCA
455 TGGATTCTAGTAATGATCTTCA
** ** *
420932 TTCACGTTGTGATTAGGCACTAGGAA-GATATTCTCCTCATTAGGATAAATGATATTGATGATTT
1 TTCATTTTGTGATTAGGCACTATAAACG-TATTCTTCTCATTAGGATAAATGATATTGATGATTT
* * * *
420996 TCTTTTGCATGGAAATATTTTCTTTGCCGTATTTTCCTTAAAATCAAAGTTCATTTCTTAAATAA
65 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAA
* * * * *
421061 GGCAAGCATTGATTCTCATAACAATCTCCCTCTCTTTTTGAGATTGGAAACCAAAAACACATTCC
130 GGCAAGCATTGATTCTCGTAACAGTCT-CCACTCTTTTCGAGATTGGGAACCAAAAACACATTCC
* * * * * *
421126 TTTTAATAGGATACACGACATTGACGCTTTAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTT
194 TTTCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTT
* * * *
421191 TGATAAAATAAAAGTTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCT
259 TGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCT
* * *
421256 TTTTTGGATTAGACGCCATAAACTTAGTCTTCTCATAAGGATACACGATATTGACGGTTTGGTTT
323 TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTT
* * * *
421321 CGTAAGAAA-GCTTCCTTCCCACCAATTTTGGTAAAGTCTATGTTCATGCCTCAAATGTG-CAAA
388 CGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAA
421384 CATGGATTCTAGTAATGATCTTCA
453 CATGGATTCTAGTAATGATCTTCA
** * * * * * * * *
421408 TTCACGTTGTTATTAGGCAGTATCAACTTATTCTCCTCCTTAGGATAAATGATATGGGTGATTTT
1 TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
*
421473 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
* * * *
421538 GCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTAGGAGCGAAAAACACATTCCTT
131 GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
* * * * *
421603 TCATTAGGATACACGACATTAATGCTTTGATGTCGCAAGAAAAGCATTTCTTTCAATCGTTTTTG
196 TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
* * *
421668 ATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAGTACTCACATTAATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
* *
421733 TTGGATTAGGCACCATAAACTTAGTCATATCATAAGGATACACGATATTGATGGTTTGGTT
326 TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTT
421794 AACAAAAGTT
Statistics
Matches: 15637, Mismatches: 2027, Indels: 594
0.86 0.11 0.03
Matches are distributed among these distances:
457 2 0.00
458 199 0.01
459 30 0.00
460 12 0.00
461 139 0.01
462 9 0.00
464 10 0.00
465 637 0.04
466 476 0.03
467 103 0.01
468 3 0.00
469 130 0.01
470 320 0.02
471 237 0.02
472 35 0.00
473 833 0.05
474 2137 0.14
475 2878 0.18
476 5893 0.38
477 585 0.04
478 146 0.01
479 21 0.00
480 19 0.00
481 377 0.02
482 3 0.00
483 3 0.00
484 1 0.00
485 4 0.00
486 4 0.00
488 5 0.00
489 1 0.00
490 2 0.00
492 2 0.00
494 2 0.00
496 2 0.00
498 2 0.00
500 6 0.00
502 5 0.00
503 3 0.00
504 1 0.00
505 2 0.00
506 3 0.00
507 1 0.00
508 7 0.00
509 14 0.00
510 12 0.00
511 3 0.00
512 3 0.00
513 241 0.02
514 74 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (476 bp):
TTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTT
CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATTCCTTAAATAAG
GCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTT
TCATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTT
TTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGT
AAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
GGATTCTAGTAATGATCTTCA
Found at i:411950 original size:158 final size:158
Alignment explanation
Indices: 406573--413848 Score: 941
Period size: 159 Copynumber: 46.0 Consensus size: 158
406563 GTTGATGGAT
* * * * * * *
406573 TGGTTTGGTTTCGTAAGAATGAC-TTTCTTCCTACCAATTTTGGTAAAGTCTAAGTTCATGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * * * * *
406637 AATTGTGGCAAACATGGATTCTAGTAATGGTCTTCATTCACTTTATGATTAGGCACTATAAACAT
66 AAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTC-TTTTGTGATTAGGCACCATAAACGT
* * *
406702 ATTCTTCTTATTAGGATAAAAGATATTGA
130 ATTCTTCTCATTAGGATACATGATATTGA
* ** * * ** * **** * ** * * *
406731 TGATTTTCTTTTGCATGAAAATCTTTTCTT-TGTGCAATTTTCCTTAAAATCAAATTTAATTCCT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGCCT
* * * * * * * * ** * ** * *
406795 TAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAAGATTAGGAATGAAAAACA
65 CAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATAAACG
* ** *
406860 CATTCCTT-TCATTAGGATACGCGACATTGA
129 TATT-CTTCTCATTAGGATACATGATATTGA
** * * * * * * * *
406890 TACTTTGATGTCGCAAGAAAAGCATTTCTTCCAACAGTTTTTGATAGAATCAAAGTT--TGTCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-C
* * * * * * *
406953 TTAAAAAAGACAAACATGAGTAGTCACACTAAT--TC-TCATTCTTTTTTGGATTAGGCACCAAA
64 TCAAATAAGACAAACATG-G-ATTC-TAGTAATAGTCTTCATTCTTTTGT-GATTAGGCACCATA
* * *
407015 AACTTAGTT-TTCTCATAAGGATACACGATATTGA
125 AACGTA-TTCTTCTCATTAGGATACATGATATTGA
* * * * * *
407049 TGGTTTGGTTTCGTAAGAAAAGC-TTTCTTCCAACCAATTTTGGTAAAGTCTAAGTT--TGCACC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG--CC
* * * **
407111 TCAATTATGGA-AAACATGGA-TCGTAGTAAT-GATCTTCATTCACTTTGTGATTAGGCAATATA
64 TCAAATA-AGACAAACATGGATTC-TAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATA
** * * * *
407173 AACAAAGTCTCCTCATGAGGATAAATGATATTGA
125 AACGTATTCTTCTCATTAGGATACATGATATTGA
* ** * * * * ** ** ** *
407207 TGATTTTTTTTTTGCATGGAAA-TCTTTTCTTTGC-CTTATTTTCCTCAAAATCAAA-TTCATCC
1 TG-GTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTTGGT-AAAATCAAAGTTCATGC
* ** * * * * * * * *** * *
407269 CTTAAATAAGGTAAGCGTTGATTCTTGTAACAGTCTCCACTCTTTTCAACATTGGGAACCGA-AA
63 CTCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGGCACC-ATAA
* * * * *
407333 ACACT-TTCCTT-TCATTAGGACATAAGACATTGA
126 AC-GTATT-CTTCTCATTAGGATACATGATATTGA
* * * * * * * * * * * *
407366 TGCTTTGGTGTCGTAAAAAAAGCATTTTTTTCAACCGTTTTTGATAGAATCAAGGTT--TGTCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-C
* * *
407429 TAAAATAAGACAAACAT-GA-T-TAGTTATACTAATCCTCATTCTTTT-TAGGATTAGGCACCAT
64 TCAAATAAGACAAACATGGATTCTAG-TA-A-TAGTCTTCATTCTTTTGT--GATTAGGCACCAT
* ** * *
407490 AAACCTAGACTTCTCATAAGGATACACGATATTGA
124 AAACGTATTCTTCTCATTAGGATACATGATATTGA
* * * * * * * * **
407525 AGCTTTGGTTTCGTAAGAAAGGC-TTTCTTCCCGCCAATTTTGGTAAAGTCTATGTTCCGGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * * * * ** *
407589 GAATGTGACAAACATGGATTGTAGTAAT-GATCTTTATTCATGTCGTGATTAGGCACTACGAACA
66 AAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAACG
* *
407653 TATTCTCCTCATT-GTGATAAATGATATTGA
129 TATTCTTCTCATTAG-GATACATGATATTGA
* ** * * * ** * ** * * ** *
407683 TGATTTACTTTTGCATAGAAA-TCTTTTCTTTAC-CCTATTTTTCCATGACATCAATA-TTTTTC
1 TGGTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGA-TTTT-GGTAAAATCAA-AGTTCATG
* * * * ** * ** ** * * *
407745 CCTTAAATAAGACAAGCATTGATTCTCGCCACAGTCTTCCCTCTTTTCAAGATTGGGAACCAAAA
62 CCTCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATAA
*** * * *
407810 AAAAATTCCTT-TCATTAAGATATATGACATTGA
126 ACGTATT-CTTCTCATTAGGATACATGATATTGA
* * * * * * * * * * *
407843 CGCTTTAGTGTCGCAAAAAAAGCATTTCTAT-CAACCG-TTTT-TTACAGTACCAAAATT--TGT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCT-TCCCACCGATTTTGGTA-A-AATCAAAGTTCATG-
* * * * * *
407903 CTTTTAAATAAGACAAACATGAATAGTC-A-TACTAATCTTCATTCTTTTTTGGATTAGGCACCA
62 C-CTCAAATAAGACAAACATGGAT--TCTAGTAATAGTCTTCATTCTTTTGT-GATTAGGCACCA
* * * * *
407966 TATACTTAGTCTTCTCATAACGATACATGATATTGA
123 TAAACGTATTCTTCTCATTAGGATACATGATATTGA
* * * * * * * * * *
408002 TGCTTTGGTTTTGTAAGAAATGC-TTTCTTCCCACCAATTTTGGTATAGTCTACGTTCGTGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
** * * * **
408066 AAATGTGACAAACATTTGATTCTAGTAAT-GATCATCATTCACTTTGTGATTAGGCAGTATAAAC
66 AAATAAGACAAACA-TGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAAC
* * * *
408130 TTATTC-TCTTATTAGTATAAATGATATTGA
128 GTATTCTTCTCATTAGGATACATGATATTGA
* ** * * * * ** * ** * *
408160 TGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCGAAGTTCATTCC
1 TGGTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGCC
* * * * * * * * * * * *
408223 TTAAATAAGGCAAGCATTGATTCTCA-TAACAATCTCCACTCTTTTCGAGATTGGGAACCAAAAA
64 TCAAATAAGACAAACATGGATTCT-AGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATAAA
** * ** *
408287 CACATTTCTT-T-TTTCAGGATACGCGACATTGA
127 CGTA-TTCTTCTCATT-AGGATACATGATATTGA
* * * * * * * *
408319 TGCTTTGATGTCGCAAGAAAAGCATTTC-GCCCAACCGATTTTGATAGAATCAATGTT--TGTCT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCC-ACCGATTTTGGTAAAATCAAAGTTCATG-C-
* * * *
408381 CTTAAATAAGACAAACAT-GA--GTAGTCAAACTAATCCTCATTCTTTCCTG-GATTAGGCACCA
63 CTCAAATAAGACAAACATGGATTCTAGT--AA-TAGTCTTCATTCTTT--TGTGATTAGGCACCA
* * * *
408442 TAAACCTAGTCTTCTCATAAGGATACACGATATTGA
123 TAAACGTATTCTTCTCATTAGGATACATGATATTGA
* * * * * * * *
408478 TGGTTTGGTTTTGTAAGAATGAC-TTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * * * *
408542 AATTGTGGCAAACATGGATTCTAGTAATGGTCTTCATTCACTTTGTGATTAGGCACTATAAACAT
66 AAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTC-TTTTGTGATTAGGCACCATAAACGT
* * *
408607 ATTTTTCTCATAAGGATAAATGATATTGA
130 ATTCTTCTCATTAGGATACATGATATTGA
* ** * * ** * ** * * *
408636 TGATTTTCCTTT-GCATGGAAA-TC-TTT-TTCTGACCAATTTTCCTTAAAATCAAATTTAATTC
1 TG-GTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGC
* * ** * * * * * ** * *
408697 CTTAAATAAGGCAAGTATTGATTCTTGAAACAGTCTCCATTCTTTTCAAGATT-GGAAACCAAAA
63 CTCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGG-CACCATAA
** *
408761 ACACATTCCTT-TCATTAGGATAGGCA--ACATTGA
126 ACGTATT-CTTCTCATTAGGATA--CATGATATTGA
* * * ** * ** * * * *
408794 TGCTTTGATGTCATAAGAAAAGCATTTCTTCTAACCGTTTTTGATAGAATTAAAGTT--TGTCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-C
* * * * *
408857 TTAAATAAGACAAACAT-GA--GTAGTGACACTAATCCTCATTCTTTTTTGGATTAGGCACCATA
64 TCAAATAAGACAAACATGGATTCTAGT-A-A-TAGTCTTCATTCTTTTGT-GATTAGGCACCATA
* * * * *
408919 AACTTAGTCTTCTCATAAAGATACATGATAGTGA
125 AACGTATTCTTCTCATTAGGATACATGATATTGA
** * * * * *
408953 TGGTTTGGTTTCGTGAGAAAGGC-TTTCTTCCCGCCAATTTTGGTAAAGTCTAAGTTCGTGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * * *
409017 AATTGTGGCAAACATGGATTGTAGTAAT-GATCTTCATT-TACTTTGTAATTAGGCACTATAAAC
66 AAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTCT--TTTGTGATTAGGCACCATAAAC
** * * *
409080 AAAGTT-TCCTCATCAGGATAAATGATATTGA
128 GTA-TTCTTCTCATTAGGATACATGATATTGA
* ** * * * * ** * **
409111 TGATTTTATTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCATAAAATCAAA-TTCAT-CC
1 TGGTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGCC
* * * * * * * * ** * ** * * *
409172 CCTAAAAAAGGCCAGCATTGATTCTTGTAACAGTCCCCACTCTTTTCGACATTGGGAACCAAAAA
64 TC-AAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATAAA
** * *
409237 CACATTCCTT-TCATTAGGATATATGACATTGA
127 CGTATT-CTTCTCATTAGGATACATGATATTGA
* * * * * * * * * *
409269 TGCTTTGGTGTT-GTAAAAAAAGCACTTTCTT-TCAACTATTTTTGATAGAATCAAAGTTTAT-C
1 TGGTTTGGT-TTCGCAAGAAAGGCA-TTTCTTCCCACCGA-TTTTGGTAAAATCAAAGTTCATGC
* * * * * * *
409331 TCTAAAATAAGGCAAACATGAATAGTC-A-TACTAATCCTCATTCTTTT-TAGGATTATGCACCA
63 -CTCAAATAAGACAAACATGGAT--TCTAGTAATAGTCTTCATTCTTTTGT--GATTAGGCACCA
* ** * *
409393 TAAACTTAGACTTCTCATAAGGATACACGATATTGA
123 TAAACGTATTCTTCTCATTAGGATACATGATATTGA
* * ** * * * * * * * *
409429 AGCTTTGGTTTCATAAGAAAGG-TTTTCTTCCCACCAATTTTGGCAAAGTCTATGTCCGTGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
** * * ** * * ** *
409493 AAATGTGGCAAACATGGATTGTAGTAAT-GATCTTCATTCACGTTGTGATTGGGCACTACGAACA
66 AAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAACG
* * *
409557 TATTCTCCTCATTATGATAAATGATATTGA
129 TATTCTTCTCATTAGGATACATGATATTGA
* * ** *** ** * ** * * * *
409587 AGATTT--TCTTCTTAA-AAA-TTTTTTCTTTGC-CCTATTTTCCATGACATCAATA-TTCTTCC
1 TGGTTTGGT-TTCGCAAGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAA-AGTTCATGC
* * * * * ** ** * ** *
409646 CTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTTCCCTCTTTTCAAGATTTGAAACCAAAAA
63 CTCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATAAA
* * * * *
409711 C-AATTCCTT-TCATTAAGATATATGACACTGA
127 CGTATT-CTTCTCATTAGGATACATGATATTGA
* * * * * * * ** *
409742 CGCTTTGGTGTCGTAA-AAAAGCATTTCTAT-CAACC-ATTTTTGATAGTAGCAAAGTT--TGTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCT-TCCCACCGA-TTTTGGTAAAATCAAAGTTCATG-C
* * * * * *
409802 ACTTAAATAAGACAAACATGAATAGTC-A-TACTAATCCTCATTCTTTTTTGGATTAGGCACCAT
63 -CTCAAATAAGACAAACATGGAT--TCTAGTAATAGTCTTCATTCTTTTGT-GATTAGGCACCAT
* * * *
409865 AAACTTAGTCTTCTCATAATGATACATGATATTGA
124 AAACGTATTCTTCTCATTAGGATACATGATATTGA
* * * * * * * *
409900 TGCTTTGGTTTTGTAAGAAATGC-TTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCATGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
*** * * * *** ** *
409964 AAACGTGACAAACATGGACTCTAGTAAT-GATCATCTTTCACAATGTGATTAGGCAGTATAAACT
66 AAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAACG
*
410028 TATTC-TCTTATTAGGATA-ACTGATA-TGTA
129 TATTCTTCTCATTAGGATACA-TGATATTG-A
* ** * * * ** * ** *
410057 TGATTTTCTTTTC-CATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGCTT-ATT
1 TG-GTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAG-TTCATG
* * * * * * * * * * *
410118 CCTTAAATAAGGCAAGCATTGATTCTCA-TAACAGTCTCCACTTTTTTTGAGATTGGGAACCAAA
62 CCTCAAATAAGACAAACATGGATTCT-AGTAATAGTCTTCA-TTCTTTTGTGATTAGGCACCATA
** * ** *
410182 AACACATTCCCTT-T-TTTAGGATACGCGACATTGA
125 AACGTATT--CTTCTCATTAGGATACATGATATTGA
* * * * * * * * * *
410216 CT-TTTTGATATCGCAAGAAAAGCTTTTCTTCCAACCGTTTTTGATAGAATCAAA-TT-TTGTCT
1 -TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-
* * * * *
410278 CTTAAATAAGACAAACAT-GA--GTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCAT
63 CTCAAATAAGACAAACATGGATTCTAGT-A-A-TAGTCTTCATTCTTTTGT-GATTAGGCACCAT
* * *
410340 -AA-G---TCATCTCATAAGGATACACGATATTGA
124 AAACGTATTCTTCTCATTAGGATACATGATATTGA
* * * * * * * * * *
410370 CGGTTTGGTTTTGTAAGAAA-GC-TTCCTTCCTACCAATTTTGGTAAAGTCTATGTTCGTGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * * ** * ** *
410433 AACTGTGCCAAACATGGATTCTAATAA-AGATCTTCAATCAAGTTGTGATTACGCAGTATAAACT
66 AAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAACG
* * *
410497 TATTCTCCTCCA-TAGGATAAATGATATGGA
129 TATTCTTCT-CATTAGGATACATGATATTGA
* ** * * * * *** ** ** *
410527 TGATTTTCTTTTGCATGGAAA-TCTTTTCTT-TGGCTTATTTTCCTTAAAATCAAAGTTCATTCC
1 TGGTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGCC
* * * * * * * * * * * *
410590 TTAAATAAGGCAAGCATTGATTCTCA-TAACAATCTCCACTCTTTTCGGGATTGGGAACCAAAAA
64 TCAAATAAGACAAACATGGATTCT-AGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATAAA
** * ** * *
410654 CACATTCTTTTTTTTAGGATACACGACATTGA
127 CGTATTCTTCTCATTAGGATACATGATATTGA
* * ** * * * * * * *
410686 TGCTTTGATGCCGAAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATAAAAGTT--TGGCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCAT-GC-C
* * * *
410749 TTAAATAAGACAAACAT-GA--GTAGTCACACTAATCCTCATAT-TTATTG-GATTAGGCACCAT
64 TCAAATAAGACAAACATGGATTCTAGT-A-A-TAGTCTTCAT-TCTT-TTGTGATTAGGCACCAT
* * * *
410809 AAACATAGTCTTCTCA-TACGGATGCACGATATTGA
124 AAACGTATTCTTCTCATTA-GGATACATGATATTGA
* * * * ** * *
410844 TGGTTTGGTTCCGTATGAAAGGC-TTTCTTCCCACCAATTTCAG-AAAAGTCTAAGTTCGTGCCT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAA-TCAAAGTTCATGCCT
* * * ** * *
410907 CAATTATGACAAACATGGAATCTAGT-AGCGATCTTCATTCATTTTGTGATTAGGCACTATAAAT
65 CAAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAAC
* *
410971 GTATTCTTCTCATTAGGATAAATGATGTTGA
128 GTATTCTTCTCATTAGGATACATGATATTGA
** * * * * ** * ** * * *
411002 TGGTTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAATTTAATTCC
1 TGGTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGCC
* * * * * * * ** * * *
411065 TTAAAAAAGGCTAGCATTGATTCTCGTAACGGT-TTCCACTCTTTTCGTGATT-GAGAACCAAAA
64 TCAAATAAGACAAACATGGATTCTAGTAATAGTCTT-CATTCTTTT-GTGATTAG-GCACCATAA
** * * *
411128 ACACATTCTTTTCATTAGGATACGTGACATTGA
126 ACGTATTCTTCTCATTAGGATACATGATATTGA
*** * * * * * * **
411161 CCCTTTGATGTCGCAAGAAATGCATTTCCTCCAACCGATTTTGATTGAATCAAAGTT--TGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* * * *
411224 TTAAATAAGACAAAAAT-GA--GTAGTCACACTAATCCTT-ATTCTTTTTTGGATTAGGCACCAT
66 --AAATAAGACAAACATGGATTCTAGT-A-A-TAGT-CTTCATTCTTTTGT-GATTAGGCACCAT
* * * *
411285 AAACTTAGTCTTCTC-TTAAGGATACAAGATATTGG
124 AAACGTATTCTTCTCATT-AGGATACATGATATTGA
* * * * * * **
411320 TGGTTTGGCTTCGTAAGAAAGGC-TTACTTCCCA-TGAATTTTGGTAAAGTCTAAGTTCGGGCCT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCG-ATTTTGGTAAAATCAAAGTTCATGCCT
* ** * *
411383 CAATTGTGACAAACATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGCAGTC-TAAAC
65 CAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTC-TTTTGTGATTAGGCA-CCATAAAC
* * * *
411447 GTATTCTTCTCATTCGGATAAATGATGTTAA
128 GTATTCTTCTCATTAGGATACATGATATTGA
* * * ** * ** *
411478 TGGTATT-CTATT-GCATGGAAA-TC-TATTCTTTGC-CCTATTTTCCTAAAATGCAATGTTCA-
1 TGGT-TTGGT-TTCGCA-AGAAAGGCAT-TTCTTCCCACCGATTTTGGTAAAAT-CAAAGTTCAT
* ** * ** * * * * * * * * **
411537 ACCTTTTAATAAGGCAAGTATTGATTCTCGTAATAGTCTCCACTCTTCTCGAGAATAGGAATTGA
61 GCC-TCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTT-TTGTGATTAGGCA-CCA
** * * *
411602 -AAACACATTCTTTTCATTAGGGTACATGACATTGA
123 TAAACGTATTCTTCTCATTAGGATACATGATATTGA
* * * ** * ** * * * **
411637 TGCTTTGATGTCGCAAGAAAATCACTTCTTCTAACCGTTTTTGATAGAATCAGTGTT--TGTCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-C
* * * * * * *
411700 TTAAATAAGAGAAACAT-GA--GTAGTCACACCAATCCTCATTCTTTTTTGGATTAGGCACCATA
64 TCAAATAAGACAAACATGGATTCTAGT-A-A-TAGTCTTCATTCTTTTGT-GATTAGGCACCATA
* * * *
411762 AACTTAGTCTTCTCATAAGGATACACGATATTGA
125 AACGTATTCTTCTCATTAGGATACATGATATTGA
* * *
411796 TGGTTTGGTTTCGTAAGAAAGGC-TTTCTTCCCACCGATTTTGGTAAAATCTAAGTTCGTGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
** ** * *
411860 ATTTGTGACAAACATGGATTCTAGTAATAGTCTTCATTCATTTTGTGATTAGACACTATAAACGT
66 AAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTC-TTTTGTGATTAGGCACCATAAACGT
*
411925 ATTCTTCTCATTAGGATAAATGATATTGA
130 ATTCTTCTCATTAGGATACATGATATTGA
* ** * * * * ** * ** * * * *
411954 TGATTTTTTTTTGCATGGAAA-TCTTTTCTT-TGACCTATTTTCCTTGAAATCAAATTTAATTCC
1 TGGTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGCC
* * * * * * * * * * * * *
412017 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACGAAAAAC
64 TCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATAAAC
** * *
412082 ACATTCCTT-TCATTAAGATACATGACATTGA
128 GTATT-CTTCTCATTAGGATACATGATATTGA
* * * * * * * *
412113 TGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTT--TGTCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-C
* * * * * * * * *
412176 TTAAAAAAGGCAAACATGAGTAGTC-A-CACAAATTC-TCATTCTTTTTTGGATTAGGGACCATA
64 TCAAATAAGACAAACATG-G-ATTCTAGTA-ATAGTCTTCATTCTTTTGT-GATTAGGCACCATA
* * * * *
412238 AACTTAGTCTTCTCATAAGGATACACGATACTGA
125 AACGTATTCTTCTCATTAGGATACATGATATTGA
* * * * * *
412272 TGGTTTGGTTTCGTACGAAAGGC-TTTCCTCCCACCAATTTTGGTAAAGTCTAAGTTCATGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * *
412336 AATTGTGACAAACATGGATTCTAGTAGTGGTCTTCATTCATTTTGTGATTAGGCACTATAAACGT
66 AAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTC-TTTTGTGATTAGGCACCATAAACGT
*
412401 ATTCTTCTCATTAGGATAAATGATATTGA
130 ATTCTTCTCATTAGGATACATGATATTGA
* ** * * * * ** * ** *
412430 TGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAA-TTCATCCC
1 TGGTTTGGTTTCGCA-AGAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAAAGTTCATGCC
* * * * ** * * **** * * * *
412492 TTAAATAAGGCAAGCATTGATTCCCGTAACAGTCTTCACTCTTTCCAACATTGGGAACCAAAAAA
64 TCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTT-TGTGATTAGGCACCATAAAC
** * * *
412557 ACATTCCTT-TTATTAGGATATATGACATTGA
128 GTATT-CTTCTCATTAGGATACATGATATTGA
* * * ** * * * * * * * *
412588 CGCTTTGGTATCATAAAAAAAGCATTTCTTTCAACTGTTTTTGATAATATCAAAGTT--TGTCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-C
* * *
412651 TAAAATAAGAGC-AACAT--A--C---T-A-A-TCCTCATTCTTTTTTGGATTAGGCACCATAAA
64 TCAAATAAGA-CAAACATGGATTCTAGTAATAGTCTTCATTCTTTTGT-GATTAGGCACCATAAA
* * * * *
412705 CTTAGTCTTCTCATAAGGATGCACGATATTGA
127 CGTATTCTTCTCATTAGGATACATGATATTGA
** * * * * *
412737 TGGTTTGGTTTCATAAGAAAGGC-CTTCTTCCCACCAATTTTGGTAAAATCTAAGTTCGTGCCTT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * ***
412801 AATTGTGACAAACATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGGATTGTAAACGT
66 AAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTC-TTTTGTGATTAGGCACCATAAACGT
* *
412866 ATTCTTCTCAATAGGATAAATGATATTGA
130 ATTCTTCTCATTAGGATACATGATATTGA
* * ** * * * ** ** ** *
412895 TGGCATT-CTTTTACATGGAAA-TC-TATACTTTGC-CTTATTTTCCTAAAATCCAATGTTCA-G
1 TGG-TTTGGTTTCGCA-AGAAAGGCAT-TTCTTCCCACCGATTTTGGTAAAAT-CAAAGTTCATG
* * * * * * * * * * * * * *
412955 CCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAATCTCCACTCTTTTCGAGATTGGGAACCAAA
62 -CCTCAAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATA
* *
413020 AACATATTCCTT-TCATTAGGATACATGACATTGA
125 AACGTATT-CTTCTCATTAGGATACATGATATTGA
* * * * * * * * *
413054 CGCTTTAGTGTT-GCAAAAAAAGCATTTCTTTCAACC-ATTTTGATAGAATCAAAGTT--TGTCT
1 TGGTTTGGT-TTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-
* ** * * * *
413115 CTTAAATAAGACAAACAT-GA--AAAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCAT
63 CTCAAATAAGACAAACATGGATTCTAGT-A-A-TAGTCTTCATTCTTTTGT-GATTAGGCACCAT
* * * * * *
413177 AAACTTAGTCTTGTCATAAGCATACACGATATTGA
124 AAACGTATTCTTCTCATTAGGATACATGATATTGA
* * * * * * *
413212 CGGTTTGGTTTCGTAAGAAA-GC-TTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCTTGCCTC
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
* ** * * * ** * *
413275 AGATGTGCCAAACATGGATTCTACTAAT-GATCTTCATTCATGTTGTGATTAGGCAGTATACACT
66 AAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAACG
* * * *
413339 TATTCTCCTCCTTAGGATAAATGATATGGA
129 TATTCTTCTCATTAGGATACATGATATTGA
* ** * * * ** * ** * * *
413369 TGATTTTCTTTTGCAAGGAAA-TCTTTTCTTTGC-CCTATTTTCCATGACATCAATA-TTC-TTC
1 TGGTTTGGTTTCGCAA-GAAAGGCATTTCTTCCCACCGATTTT-GGTAAAATCAA-AGTTCATGC
* * * * * * ** * * *
413430 TCTTAAATAAGGCAAACATTGATTCTCA-TAACAGTCTTCCTTTTTTTCAAGATTGGGAACCAAA
63 -CTCAAATAAGACAAACATGGATTCT-AGTAATAGTCTTCATTCTTTT-GTGATTAGGCACCATA
** * * *
413494 AACACATTCCTT-TCATTAAGATATATGACATTGA
125 AACGTATT-CTTCTCATTAGGATACATGATATTGA
* * * * * * * * * ** *
413528 CGCTTTGGTCTCGCAAAAAAAGCATTTCTAT-CAATCGTTTTTGATAGTACCAAAGTT--TGTCT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTCT-TCCCACCGATTTTGGTAAAATCAAAGTTCATG-C-
* * * * * * * ** *
413590 CTTAAATAAGATAAACATGAAAAGTC-A-CAAAAATCCGCATTCTTTTTTGGATTAGGCACCATA
63 CTCAAATAAGACAAACATG--GATTCTAGTAATAGTCTTCATTCTTTTGT-GATTAGGCACCATA
* * * * *
413653 AACTTAGTCTTCTCATAAGCATACACGATATTGA
125 AACGTATTCTTCTCATTAGGATACATGATATTGA
* * ** * * * * *
413687 CGGTTTGGTTTCGTAAGAAA-GC-TTTCTTTCTGACCAATTTTGGTAAAGTCTATGTTCTTGCCT
1 TGGTTTGGTTTCGCAAGAAAGGCATTTC-TTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCT
** * * * * * *
413750 CAAATGTGCCAAACATGGATTCTACTAAT-GAACTTCATTCATTTTGTGGTTAGGCACTACAAAC
65 CAAATAAGACAAACATGGATTCTAGTAATAG-TCTTCATTC-TTTTGTGATTAGGCACCATAAAC
* *
413814 GTATTCTTCTCATTAGAATA-ATTGATATTCA
128 GTATTCTTCTCATTAGGATACA-TGATATTGA
413845 TGGT
1 TGGT
413849 ATTCCTTTGC
Statistics
Matches: 4902, Mismatches: 1779, Indels: 874
0.65 0.24 0.12
Matches are distributed among these distances:
147 1 0.00
148 39 0.01
149 59 0.01
150 4 0.00
151 2 0.00
152 55 0.01
153 14 0.00
154 33 0.01
155 52 0.01
156 119 0.02
157 371 0.08
158 1829 0.37
159 1931 0.39
160 345 0.07
161 43 0.01
162 5 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (158 bp):
TGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCACCGATTTTGGTAAAATCAAAGTTCATGCCTC
AAATAAGACAAACATGGATTCTAGTAATAGTCTTCATTCTTTTGTGATTAGGCACCATAAACGTA
TTCTTCTCATTAGGATACATGATATTGA
Found at i:419132 original size:158 final size:157
Alignment explanation
Indices: 417950--420072 Score: 584
Period size: 159 Copynumber: 13.4 Consensus size: 157
417940 TTCTTTTTTA
* * * * * **
417950 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTT-CATA
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCAT-
* * * * ** *
418013 AGAATGGCTTTCTTCTCC-CCAATTTTGGTAAAGTCTAAGTTTGTGCCTCAATTGTGACAAATAT
65 AGAA-AGCTTTCTTC-CCACCAACTTTGGTAAAATCAAAGTTCATGCCTCAATTGTGACAAACAT
* *
418077 GGATTCTAGTAATGGTATTCATTCATTTTGT
128 GGATTCTAGTAATAGTCTTCATT-ATTTTGT
* * * * *
418108 GATTAGGCACTGTAAACATATTCTTCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAT-
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCATA
* ** * * * ** * * * * * * * ** ** * *
418172 GAAATCTTTTCTTTGC-TCTATTTTCCTTCAAACCAAATTTAATTCCTTAAATAAGGTAAGCATT
66 GAAAGC-TTTCTTCCCACCAACTTT-GGTAAAATCAAAGTTCATGCCTCAATTGTGACAAACATG
* * * * *
418236 GATTCTTGTAACAGTCTCCACTTTTTTTGA
129 GATTCTAGTAATAGTCTTCA-TTATTTTGT
* * * * * * * * * ** * *
418266 GATT-GGGAATGA-AAAGCACATTCCTTTCACTAGGATACGCGACATTGAGGCTTTGATGTGGCA
1 GATTAGGCACT-ATAAA-CATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCA
* ** * * * * * *
418329 -AGAAAAGCATTTCTTCCAACCATGTTTGATAGAATCAAAGTTTAT-CTCTTAAATAG-GGCAAA
64 TAG-AAAGC-TTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATGC-C-TCAATTGTGACAAA
* * * * *
418391 CAT-GA--GTAGTCACACTAATCCTCATTCTTTTTT
125 CATGGATTCTAGT-A-A-TAGTCTTCATTATTTTGT
* * * * * * * * ** *
418424 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATATAGGATATTGATG-GTTTGGTTT-CGT
1 -GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCAT
** * * * * *
418487 ACGAAAGGCTTTCTTATCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAA
65 A-GAAA-GCTTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATGCCTCAATTGTGACAAACAT
* * *
418552 GGATTCCAGTAGTGGTCTTCATTCATTTTGT
128 GGATTCTAGTAATAGTCTTCATT-ATTTTGT
* * * * *
418583 GATTAGGCACTATAAACGTAATCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCATA
* * * ** * * * * * ** * *
418647 GAAAATCTTTTCTTTGCC-CC-ATTTTCCTTAAAATCAAA-TATAATTCTTTAAATAAGGCAAGC
66 G-AAAGC-TTTC-TTCCCACCAACTTT-GGTAAAATCAAAGT-TCATGCCTCAATTGTGACAAAC
* * ** * * * *
418709 ATTGATTCTCGTAACGGTCTCCACTCTTTTCGG
126 ATGGATTCTAGTAATAGTCTTCATTATTTT-GT
* * * ** * * * *** ** * *
418742 GATTAGGAACCA-AAAGCACATTTGTTTCATTAGGATACGCGACATTGACCCTTTGATCTCGCA-
1 GATTAGGCACTATAAA-CATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCAT
* * *** ** * * * ** *
418805 GGAAAAGCATTTCTTCCAACCGTTTTTCATAGAATCAAAGTT--TGTCTCTTAAGTAAGATAAAC
65 AG-AAAGC-TTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATG-C-CTCAATTGTGACAAAC
* * * * *
418868 AT-GA--GTAGTCACACTATTCCTCATTCTTTTTT
126 ATGGATTCTAGT-A-A-TAGTCTTCATTATTTTGT
* * * * * * **
418900 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTT-CAT
1 -GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCAT
* *
418963 AAGAAAGGCTTTCTTCCCACCAACTTTGGTAAAATCTAAGTTCGTGCCTCAATTGTGACAAACAT
65 -AGAAA-GCTTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATGCCTCAATTGTGACAAACAT
*
419028 GGATTCTAGTAATGGTCTTCATTAATTTTGT
128 GGATTCTAGTAATAGTCTTCATT-ATTTTGT
* * *
419059 GATTAGGCTCTATAAACATATTCCTCTCGTTAGGATTA-ATGATATTGATGATTTTCTTTTGCAT
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGA-TACACGATATTGATGATTTTCTTTTGCAT
**** ** * ** * * * * *
419123 AGAAAGCTTT-TATTTTTCGTATTTTCCTTAAAATCAAATTTAATTCCTTCAATAAG-G-CAAGC
65 AGAAAGCTTTCT-TCCCACCAACTTT-GGTAAAATCAAAGTTCATGCC-TCAAT-TGTGACAAAC
* * * * * *
419185 ATTGATTCTCGTAACAGTCTCCATTCTTTTAGA
126 ATGGATTCTAGTAATAGTCTTCATTATTTT-GT
* * * * * * * ** ** *
419218 GATTGGGAACAAAAAACAAATTCCTTTCATTAGGATACACGACATTGATTCTTTGATGTTGCA-A
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCATA
** ** * * * * ** *
419282 GAAAAGCATTTCTTCTAACCATTTTTGATAGAATCAAAGTTTAT-CTCTTAATTAAGATAAACAT
66 G-AAAGC-TTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATGC-CTCAATTGTGACAAACAT
* * * * *
419346 -GA--GTAGTCACACTATTCCTCATTCTTTTTT
128 GGATTCTAGT-A-A-TAGTCTTCATTATTTTGT
* * * * * * **
419376 GGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTT-CAT
1 -GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCAT
* *
419439 AAGAAAGGCTTTCTTCCCACCAACTTTGGTAAAATCTAAGTTCGTGCCTCAATTGTGACAAACAT
65 -AGAAA-GCTTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATGCCTCAATTGTGACAAACAT
*
419504 GGATTCTAGTAATGGTCTTCATTAATTTTGT
128 GGATTCTAGTAATAGTCTTCATT-ATTTTGT
* * *
419535 GATTAGGCTCTATAAACATATTCCTCTCGTTAGGATTA-ATGATATTGATGATTTTCTTTTGCAT
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGA-TACACGATATTGATGATTTTCTTTTGCAT
**** ** * ** * * * * *
419599 AGAAAGCTTT-TATTTTTCGTATTTTCCTTAAAATCAAATTTAATTCCTTCAATAAG-G-CAAGC
65 AGAAAGCTTTCT-TCCCACCAACTTT-GGTAAAATCAAAGTTCATGCC-TCAAT-TGTGACAAAC
* * * * * *
419661 ATTGATTCTCGTAACAGTCTCCATTCTTTTAGA
126 ATGGATTCTAGTAATAGTCTTCATTATTTT-GT
* * * * * * * ** ** *
419694 GATTGGGAACAAAAAACACATTCCTTTCATTAGGATACACGACATTGATTCTTTGATGTTGCA-A
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCATA
* ** ** * * * * **
419758 GAAAAGCATTTTTTCTAACCATTTTTGATAGAATCAAAGTTTAT-CTCTTAATTAAGACAAACAT
66 G-AAAGC-TTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATGC-CTCAATTGTGACAAACAT
* * * * *
419822 -GA--GTAGTCACACTAATCCTCATTCTTTTTT
128 GGATTCTAGT-A-A-TAGTCTTCATTATTTTGT
* * * * * * ** *
419852 GGATTAGGCACCATAAACTTAGTCCTTTCATAAGGATACACGATATTGATGGTTTGGTTTCGCA-
1 -GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCAT
* * *
419916 CGAAAGGCTTTCTTCCCACCAA-TATTGGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACAT
65 AGAAA-GCTTTCTTCCCACCAACT-TTGGTAAAATCAAAGTTCATGCCTCAATTGTGACAAACAT
* *
419980 GGATTCTAGTAGTGGTCTTCATTCATTTTGT
128 GGATTCTAGTAATAGTCTTCATT-ATTTTGT
* * * * *
420011 GATTAGGCATTATAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
1 GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGC
420073 GTGGAAATCT
Statistics
Matches: 1377, Mismatches: 479, Indels: 218
0.66 0.23 0.11
Matches are distributed among these distances:
156 12 0.01
157 33 0.02
158 597 0.43
159 643 0.47
160 73 0.05
161 19 0.01
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (157 bp):
GATTAGGCACTATAAACATATTCCTCTCATTAGGATACACGATATTGATGATTTTCTTTTGCATA
GAAAGCTTTCTTCCCACCAACTTTGGTAAAATCAAAGTTCATGCCTCAATTGTGACAAACATGGA
TTCTAGTAATAGTCTTCATTATTTTGT
Found at i:423950 original size:19 final size:19
Alignment explanation
Indices: 423906--423961 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
423896 CTACCAGTTT
**
423906 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
423926 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
423945 CATGTATCGATATAATG
1 CATGTATCGATACAATG
423962 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:423968 original size:32 final size:33
Alignment explanation
Indices: 423927--423989 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
423917 ACAATTGTCC
*
423927 ATGTATCGATACAATG-A-ACATGTATCGATATA
1 ATGTATCGATACAAGGCATA-ATGTATCGATATA
423959 ATGTATCGATACAAGGCATAATGTATCGATA
1 ATGTATCGATACAAGGCATAATGTATCGATA
423990 CATCTGGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAGGCATAATGTATCGATATA
Found at i:426473 original size:20 final size:20
Alignment explanation
Indices: 426448--426485 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
426438 GGGTTTTCCA
426448 GATGTATCGATACATTCTTT
1 GATGTATCGATACATTCTTT
426468 GATGTATCGATACATTCT
1 GATGTATCGATACATTCT
426486 GGAAAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
GATGTATCGATACATTCTTT
Found at i:430992 original size:79 final size:78
Alignment explanation
Indices: 430897--431116 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 78
430887 ACAACGAGGC
* *
430897 TGGAGTATCCCCGATTATGGAAAATCGATGTTCTGGAAATAAAATCGGGGTTGGAGTATCCCTTC
1 TGGAGTATCCCTGATTATGGAAAATCGATGTT-TGGAAATAAAATCGGGGTTGGAGTATCCCCTC
430962 GAAAATAACAAGGT
65 GAAAATAACAAGGT
* * * * *
430976 TGGAGTATCCCTGATTATAGAAAATTGATATTTTGAAAATAAAATCGGGGTTGAAGTATCCCCTC
1 TGGAGTATCCCTGATTATGGAAAATCGAT-GTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTC
*
431041 GAAAATAACAGGGT
65 GAAAATAACAAGGT
* * * **
431055 TGGAGTAT-CCTCGATTGTGAAAAATCGATGCTTTAGAAATAAGGT-GGGGTTGGAGTATCCCC
1 TGGAGTATCCCT-GATTATGGAAAATCGATG-TTTGGAAATAAAATCGGGGTTGGAGTATCCCC
431117 GATTGTGAGA
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 19 0.16
79 99 0.82
80 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
TGGAGTATCCCTGATTATGGAAAATCGATGTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCG
AAAATAACAAGGT
Found at i:431120 original size:50 final size:51
Alignment explanation
Indices: 431051--431180 Score: 190
Period size: 50 Copynumber: 2.6 Consensus size: 51
431041 GAAAATAACA
* *
431051 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGCTTTAGAAAT-AAGGTG
1 GGGTTGGAGTATCCTCGATTGTGAAAAATCAATACTTTAGAAATAAAGGTG
* * * * *
431101 GGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGTTG
1 GGGTTGGAGTATCCTCGATTGTGAAAAATCAATACTTTAGAAATAAAGGTG
431152 GGGTTGGAGTATCCTCGATTGTGAAAAAT
1 GGGTTGGAGTATCCTCGATTGTGAAAAAT
431181 TGGTGTTTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 38 0.54
51 32 0.46
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.31
Consensus pattern (51 bp):
GGGTTGGAGTATCCTCGATTGTGAAAAATCAATACTTTAGAAATAAAGGTG
Found at i:431171 original size:51 final size:51
Alignment explanation
Indices: 431051--431225 Score: 208
Period size: 51 Copynumber: 3.5 Consensus size: 51
431041 GAAAATAACA
* * * *
431051 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGCTTTAGAAAT-AAGGTG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAGTTG
* * *
431101 GGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGTTG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAGTTG
* * * * *
431152 GGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTGAAAATAAAATTG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAGTTG
** *
431203 AAGTTAGAGTATCCCCGATTGTG
1 GGGTTGGAGTATCCCCGATTGTG
431226 GAGAATTGGT
Statistics
Matches: 105, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 38 0.36
51 67 0.64
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAGTTG
Found at i:431233 original size:51 final size:51
Alignment explanation
Indices: 431107--431250 Score: 146
Period size: 51 Copynumber: 2.8 Consensus size: 51
431097 GGTGGGGTTG
*** * * * ** *
431107 GAGTATCCCCGATTGT-GAGAAATCAATATTTTGGAAATAAAGTTGGGGTTG
1 GAGTATCCCCGATTGTGGAG-AATTGGTGTTTTGAAAATAAAATTGAAGTTA
* * *
431158 GAGTATCCTCGATTGTGAAAAATTGGTGTTTTGAAAATAAAATTGAAGTTA
1 GAGTATCCCCGATTGTGGAGAATTGGTGTTTTGAAAATAAAATTGAAGTTA
**
431209 GAGTATCCCCGATTGTGGAGAATTGGTGTTTCAAAAATAAAA
1 GAGTATCCCCGATTGTGGAGAATTGGTGTTTTGAAAATAAAA
431251 CCAAGATAGA
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
51 74 0.99
52 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGGAGAATTGGTGTTTTGAAAATAAAATTGAAGTTA
Found at i:431384 original size:79 final size:78
Alignment explanation
Indices: 431263--431423 Score: 207
Period size: 79 Copynumber: 2.1 Consensus size: 78
431253 AAGATAGAGC
* * * * *
431263 ATCCCCTCGAAATGACGGGATTGGAGTATCCCCAATTGTGAAAAACTAGTATTTTAGGAATAAAA
1 ATCCCCTCGAAATAACGAGATTGGAGTATCCCCAATTATGAAAAACTAATATTTTAGAAATAAAA
431328 -TCGGGGTTGGAGT
66 CT-GGGGTTGGAGT
* * * * *
431341 ATCCCCTCGGAAATAACGAGATTGGAGTATCTCCGATTATGAAAAATTAATGTTTTATAAATAAA
1 ATCCCCTC-GAAATAACGAGATTGGAGTATCCCCAATTATGAAAAACTAATATTTTAGAAATAAA
431406 ACTGGGGTTGGAGT
65 ACTGGGGTTGGAGT
431420 ATCC
1 ATCC
431424 TCGAGATGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
78 8 0.11
79 62 0.87
80 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (78 bp):
ATCCCCTCGAAATAACGAGATTGGAGTATCCCCAATTATGAAAAACTAATATTTTAGAAATAAAA
CTGGGGTTGGAGT
Found at i:433802 original size:13 final size:13
Alignment explanation
Indices: 433784--433812 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
433774 ATACAATGAG
433784 CAATGTATCGATA
1 CAATGTATCGATA
433797 CAATGTATCGATA
1 CAATGTATCGATA
433810 CAA
1 CAA
433813 CAAGCAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:433841 original size:20 final size:19
Alignment explanation
Indices: 433796--433851 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
433786 ATGTATCGAT
433796 ACAATGTATCGATACAACA
1 ACAATGTATCGATACAACA
433815 AGCAATGTATCGATACAATGCA
1 A-CAATGTATCGATACAA--CA
*
433837 A-AATGAATCGATACA
1 ACAATGTATCGATACA
433852 TCTGGGTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 1 0.03
20 29 0.88
22 3 0.09
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.21
Consensus pattern (19 bp):
ACAATGTATCGATACAACA
Found at i:436809 original size:20 final size:20
Alignment explanation
Indices: 436784--436837 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
436774 GTTAGAAGTA
*
436784 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
* *
436804 ATGTATCAATATAATGTACC
1 ATGTATCGATACAATGTACC
*
436824 ATGTGTCGATACAA
1 ATGTATCGATACAA
436838 ACAGTGGTAG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:440257 original size:312 final size:310
Alignment explanation
Indices: 439863--440494 Score: 883
Period size: 312 Copynumber: 2.0 Consensus size: 310
439853 CTAGAATCTA
*
439863 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTAAGAAAAAAGCCTGTCTTACGAA
1 TGTCTCATTTGAGGCATAAACTTAGACTTTACAAAAATTAGTAAGAAAAAAGCCTGTCTTACGAA
* * * *
439928 ACCAAAATATCAATATCGCGTATGCTATTGA-GAAGACTATGTTTATGTTGCCAAATCCTAAAAA
66 ACCAAAACATCAATATCGCGTATCCTAAT-ATGAAGACTATGTTTATGGTGCCAAATCCTAAAAA
* * * **
439992 -AATGGGGATGAGTATGAGAATTCATGTTTGTCTTATTTTAGAGGTAAACTTTGATTCTAT-AAA
130 GAATGGGGATGAGTATGAGAATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATGAAA
* * * * * *
440055 AAATGGTGGTAAAAAAGCCTTTCTTGTAAGGCCAAACCATCAATGTCATGTATTTCAATAAAGAT
195 AAATGGTGATAAAAAACCCTTTCTTGCAAAGCCAAACCATCAATGTCATGCATCTCAATAAAGAT
* * *
440120 TTTTGGTGCCCAATCATGAAAAAAGAATGGAGACTATAACTAGAATCCATATATT
260 TTTTGGTGCCCAATCACG--AAAAGAATAGAGACAATAACTAGAAT-C-TATATT
* ** * *
440175 TGTCTCATTTGAGGCATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
1 TGTCTCATTTGAGGCATAAACTTAGACTTTACAAAAATTAGTAAGAAAAAAGCCTGTCTTACGAA
* * *
440240 ACCACAACATCAATATCGTGTATCCTAATATGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
66 ACCAAAACATCAATATCGCGTATCCTAATATGAAGACTATGTTTATGGTGCCAAATCCTAAAAAG
* *
440305 AATGGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATGAAAA
131 AATGGGGATGAGTATGAGAATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATGAAAA
* * *
440370 AATGGTTATAAAAAACCCTTTCTTGCAAAGCCAAACCGTCAATGTCATGCATCTCAATAAGGATT
196 AATGGTGATAAAAAACCCTTTCTTGCAAAGCCAAACCATCAATGTCATGCATCTCAATAAAGATT
* *
440435 TTTGGTGCCCAATCACGAAAAGAATAGAGACAATTACTAGAATCTGTATT
261 TTTGGTGCCCAATCACGAAAAGAATAGAGACAATAACTAGAATCTATATT
*
440485 TATCTCATTT
1 TGTCTCATTT
440495 AAAGGATGAA
Statistics
Matches: 282, Mismatches: 35, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
310 14 0.05
311 2 0.01
312 137 0.49
313 53 0.19
314 76 0.27
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (310 bp):
TGTCTCATTTGAGGCATAAACTTAGACTTTACAAAAATTAGTAAGAAAAAAGCCTGTCTTACGAA
ACCAAAACATCAATATCGCGTATCCTAATATGAAGACTATGTTTATGGTGCCAAATCCTAAAAAG
AATGGGGATGAGTATGAGAATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATGAAAA
AATGGTGATAAAAAACCCTTTCTTGCAAAGCCAAACCATCAATGTCATGCATCTCAATAAAGATT
TTTGGTGCCCAATCACGAAAAGAATAGAGACAATAACTAGAATCTATATT
Found at i:452270 original size:13 final size:12
Alignment explanation
Indices: 452251--452309 Score: 57
Period size: 13 Copynumber: 4.8 Consensus size: 12
452241 ACCTTCTCTT
*
452251 CAAAAAAAAGAG
1 CAAAAAAAAAAG
452263 CAAAAAAAAAAGG
1 CAAAAAAAAAA-G
*
452276 GAAAAAAAAAA-
1 CAAAAAAAAAAG
*
452287 CAAAAAAACAAAA
1 CAAAAAAA-AAAG
452300 CAAAGAAAAA
1 CAAA-AAAAA
452310 GAGAGAAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
11 7 0.17
12 13 0.32
13 16 0.40
14 4 0.10
ACGTcount: A:0.81, C:0.08, G:0.10, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAAG
Found at i:453376 original size:55 final size:55
Alignment explanation
Indices: 453291--454188 Score: 1343
Period size: 55 Copynumber: 16.3 Consensus size: 55
453281 TCCGCTTTTT
* *
453291 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCGCCTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
453346 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
*
453401 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCGCCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
453456 AGTCCCCAAAGAGCAGGACACATCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
453511 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
453566 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
453621 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
453676 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA-TTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
453730 TAGTCCTCAAAGAACAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 -AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
453786 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
453841 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
453896 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA-TTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
453950 TAGTCCTCAAAGAACAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 -AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
454006 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
454061 ATTCCCCAAAGAGCAGGACA-CTTTTCAAAGCCCACACAAGTGGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
* * * * *
454116 AGTCCTCAAACAGCAGGACGCCT-TTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
454171 ACTCCTCAATGAACAGGA
1 AGTCCTCAAAGAGCAGGA
454189 TACAATTTAT
Statistics
Matches: 783, Mismatches: 40, Indels: 40
0.91 0.05 0.05
Matches are distributed among these distances:
54 25 0.03
55 734 0.94
56 24 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:453628 original size:29 final size:29
Alignment explanation
Indices: 453596--453683 Score: 71
Period size: 29 Copynumber: 3.1 Consensus size: 29
453586 CCTCTTAAAG
453596 CCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCCACACAAGTTGGTGGCACCTTTCAGTC
** * *
453625 CCCA-A-AGAG-CAG-GACACCTCTTAAAG--
1 CCCACACA-AGTTGGTGGCACCT-TT-CAGTC
453651 CCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCCACACAAGTTGGTGGCACCTTTCAGTC
453680 CCCA
1 CCCA
453684 AAGAGCAGGA
Statistics
Matches: 42, Mismatches: 8, Indels: 18
0.62 0.12 0.26
Matches are distributed among these distances:
26 10 0.24
27 9 0.21
28 9 0.21
29 14 0.33
ACGTcount: A:0.26, C:0.35, G:0.19, T:0.19
Consensus pattern (29 bp):
CCCACACAAGTTGGTGGCACCTTTCAGTC
Found at i:453848 original size:29 final size:29
Alignment explanation
Indices: 453816--453903 Score: 71
Period size: 29 Copynumber: 3.1 Consensus size: 29
453806 CCTCTTAAAG
453816 CCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCCACACAAGTTGGTGGCACCTTTCAGTC
** * *
453845 CCCA-A-AGAG-CAG-GACACCTCTTAAAG--
1 CCCACACA-AGTTGGTGGCACCT-TT-CAGTC
453871 CCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCCACACAAGTTGGTGGCACCTTTCAGTC
453900 CCCA
1 CCCA
453904 AAGAGCAGGA
Statistics
Matches: 42, Mismatches: 8, Indels: 18
0.62 0.12 0.26
Matches are distributed among these distances:
26 10 0.24
27 9 0.21
28 9 0.21
29 14 0.33
ACGTcount: A:0.26, C:0.35, G:0.19, T:0.19
Consensus pattern (29 bp):
CCCACACAAGTTGGTGGCACCTTTCAGTC
Found at i:454116 original size:29 final size:29
Alignment explanation
Indices: 453969--454116 Score: 71
Period size: 29 Copynumber: 5.3 Consensus size: 29
453959 AAGAACAGGA
*
453969 CACCTTTCAAAGCCCACACAAGTTGGTGG
1 CACCTTTCAAAGCCCACACAAGTGGGTGG
* * * * * * *
453998 CA-TTTTC-CAGTCCTCA-AAGAGCAG-GA
1 CACCTTTCAAAGCCCACACAAGTG-GGTGG
*
454024 CACCTCTT-AAAGCCCACACAAGTTGGTGG
1 CACCT-TTCAAAGCCCACACAAGTGGGTGG
** * * *
454053 CACCTTTC-ATTCCC-CA-AAGAGCAG-GA
1 CACCTTTCAAAGCCCACACAAGTG-GGTGG
*
454079 CACTTTTCAAAGCCCACACAAGTGGGTGG
1 CACCTTTCAAAGCCCACACAAGTGGGTGG
454108 CACCTTTCA
1 CACCTTTCA
454117 GTCCTCAAAC
Statistics
Matches: 78, Mismatches: 29, Indels: 24
0.60 0.22 0.18
Matches are distributed among these distances:
26 17 0.22
27 15 0.19
28 22 0.28
29 24 0.31
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (29 bp):
CACCTTTCAAAGCCCACACAAGTGGGTGG
Found at i:457024 original size:51 final size:53
Alignment explanation
Indices: 456951--457085 Score: 154
Period size: 51 Copynumber: 2.6 Consensus size: 53
456941 GTTGAGTTGC
* *
456951 TCAA-TTCTCCACAATCGAGGATATTCCAACTCCGATTTTACTTT-C-AAAACA
1 TCAATTTCTTCACAATCGGGGATATTCCAACTCCGATTTTA-TTTCCAAAAACA
* * *
457002 TTAA-TT-TTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACA
1 TCAATTTCTTC-ACAATCGGGGATATTCCAACTCCGATTTTATTTCC-AAAAACA
*
457055 TCAATTTCTTCACAATCGGGGACATTCCAAC
1 TCAATTTCTTCACAATCGGGGATATTCCAAC
457086 CCCGTTAATC
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
50 5 0.07
51 33 0.48
53 9 0.13
54 19 0.28
55 3 0.04
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (53 bp):
TCAATTTCTTCACAATCGGGGATATTCCAACTCCGATTTTATTTCCAAAAACA
Found at i:457186 original size:51 final size:51
Alignment explanation
Indices: 457127--457299 Score: 204
Period size: 52 Copynumber: 3.4 Consensus size: 51
457117 TTATTTCCGA
* ***
457127 GGGGATACTCCAACCTCGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTTCATAATC
* * * * * *
457178 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTTC-ATAATC
*
457230 GGGGATACTCCAACAC-CGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAAC-CTCGATTTTATTTCC-AAAATACCAATTTTTCATAATC
*
457282 GAGGATACTCCAACCTCG
1 GGGGATACTCCAACCTCG
457300 TTATTTCATC
Statistics
Matches: 101, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
51 37 0.37
52 49 0.49
53 15 0.15
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTTCATAATC
Found at i:457315 original size:28 final size:28
Alignment explanation
Indices: 457279--457360 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
457269 ATTTTTCACA
* *
457279 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
457307 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
457335 --CGAGGGAACACTCCAACCCCGTTATT
1 ATCG-GGG-ATACTCCAACCCCGTTATT
457361 ATCTCCAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.04
27 3 0.06
28 42 0.89
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:457370 original size:211 final size:210
Alignment explanation
Indices: 456963--457370 Score: 570
Period size: 211 Copynumber: 1.9 Consensus size: 210
456953 AATTCTCCAC
* * **
456963 AATCGAGGATATTCCAACTCCGATTTTACTTTCAAAACATTAATTTTCTATAATCGGGGATACTC
1 AATCGAGGATACTCCAACCCCGATTTTACTTTCAAAACACCAATTTTCTATAATCGGGGATACTC
* * *
457028 CAACTCCGATTTTATTTCCAAAAAACATCAATTTCTTCACAATCGGGGACATTCCAACCCCGTTA
66 CAACACCGATTTTATTTCCAAAAAACA-CAATTTCTTCACAATCGAGGACACTCCAACCCCGTTA
* * * * *
457093 ATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGACTTTATTTCCAA
130 ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACTTTATCTCCAA
457158 AATATTGATTTTTCAT
195 AATATTGATTTTTCAT
* * * *
457174 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACT
1 AATCGAGGATACTCCAACCCCGATTTTACTTTCAAAACACCAATTTT-CTATAATCGGGGATACT
* *
457239 CCAACACCGATTTTATTTCCAAAAATAC-CAATTT-TTCACAATCGAGGATACTCCAACCTCGTT
65 CCAACACCGATTTTATTTCCAAAAA-ACACAATTTCTTCACAATCGAGGACACTCCAACCCCGTT
* *
457302 ATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCG-TTATTATCTC
129 A-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACT-TTATCTC
457366 CAAAA
192 CAAAA
457371 CATTAAATTT
Statistics
Matches: 173, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
210 27 0.16
211 104 0.60
212 40 0.23
213 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (210 bp):
AATCGAGGATACTCCAACCCCGATTTTACTTTCAAAACACCAATTTTCTATAATCGGGGATACTC
CAACACCGATTTTATTTCCAAAAAACACAATTTCTTCACAATCGAGGACACTCCAACCCCGTTAA
TCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACTTTATCTCCAAA
ATATTGATTTTTCAT
Found at i:460524 original size:24 final size:23
Alignment explanation
Indices: 460492--460536 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
460482 TTTTTTTCTA
*
460492 TTTTCTTCTATTTTTTCTCTTGC
1 TTTTCTTCTATCTTTTCTCTTGC
*
460515 TTTTCTTTCTCTCTTTTCTCTT
1 TTTTC-TTCTATCTTTTCTCTT
460537 TTTTTTCCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTCTTCTATCTTTTCTCTTGC
Found at i:461406 original size:164 final size:162
Alignment explanation
Indices: 461189--461754 Score: 532
Period size: 164 Copynumber: 3.4 Consensus size: 162
461179 AAAATGAATT
* ** * ** * * *
461189 AATTTTTTAAAACTAAATT-ATCATGAACCAAATGATGATGTTTGATGAATTTTAAAAATTGAAA
1 AATTTTTTAAAAATAAATTAAT-ATGAAATAAATAAAAATATTTGATAAATTTTAAAAATTAAAA
* * **
461253 ACCAAATAAAATTCCCTCGAAAAAAATTACAGAGTAAAAAACACCGTCTTTTGGAAAAAAAAAGA
65 ACCAAA-AAAA-TCCCTCGAAAAAATTTA-AGAGTAAAAAACACCGTATTTCAGAAAAAAAAAGA
* *
461318 ATTTCAAGGAAAAAATTCAAAAACT-CATGAAAATG
127 ATTTCAAGGAAAAAAATCAAAAACTGAATGAAAATG
* * * ** *
461353 AATTTTTCAAAAATGAATTAGTATGAAATAAATAATGATGTTTGATAAATTTTAAAAATTAAAAA
1 AATTTTTTAAAAATAAATTAATATGAAATAAATAAAAATATTTGATAAATTTTAAAAATTAAAAA
* * * * * *
461418 CTAAGAAAAACCCCCTCGAAAAAATTTATGAAGTGAAAAACACCGTATTTCAGAAAAAGAGA-AA
66 CCAA-AAAAA-TCCCTCGAAAAAATTTAAG-AGTAAAAAACACCGTATTTCAGAAAAAAAAAGAA
461482 TTTCAAGGAAAAAAATCAAAAA-TGAATGAAAATG
128 TTTCAAGGAAAAAAATCAAAAACTGAATGAAAATG
* * * *
461516 AATGAATTTTTGAGAACTTAATTAATATGAAATAAATAAAAATATTTGATAAATTTTAAAAAATA
1 AAT---TTTTT-AAAAATAAATTAATATGAAATAAATAAAAATATTTGATAAATTTTAAAAATTA
* * ** * *
461581 AAAACCCAAAAAAATCCCTTTGAAAAAATTTATAGAGTAAAAAATATTGTATTCCAAAAAAAAAA
62 AAAA-CCAAAAAAATCCC-TCGAAAAAATTTA-AGAGTAAAAAACACCGTATTTCAGAAAAAAAA
* *
461646 AGGAAATTTCAA-GTAAAAAAT-AAAACAATGAATGAAAATG
124 A-G-AATTTCAAGGAAAAAAATCAAAA-ACTGAATGAAAATG
* *
461686 AATAAATTTTTAAAAACTCAATTAATATAAAATAAATAAAAATATTTGATAAATTTTAAAAATTA
1 AAT---TTTTTAAAAA-TAAATTAATATGAAATAAATAAAAATATTTGATAAATTTTAAAAATTA
461751 AAAA
62 AAAA
461755 TTAAGAAAAA
Statistics
Matches: 335, Mismatches: 50, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
162 1 0.00
163 36 0.11
164 101 0.30
165 2 0.01
166 7 0.02
167 89 0.27
168 8 0.02
169 12 0.04
170 79 0.24
ACGTcount: A:0.55, C:0.08, G:0.10, T:0.28
Consensus pattern (162 bp):
AATTTTTTAAAAATAAATTAATATGAAATAAATAAAAATATTTGATAAATTTTAAAAATTAAAAA
CCAAAAAAATCCCTCGAAAAAATTTAAGAGTAAAAAACACCGTATTTCAGAAAAAAAAAGAATTT
CAAGGAAAAAAATCAAAAACTGAATGAAAATG
Found at i:461608 original size:331 final size:333
Alignment explanation
Indices: 461136--461764 Score: 740
Period size: 331 Copynumber: 1.9 Consensus size: 333
461126 AAACTCGGTT
* * * * *
461136 TTTCGGAAAAAGGAAATTTTCAAAAAAAAATCCAAAACTCATGAAAATGAATTAATTTTTTAAAA
1 TTTCAGAAAAAGGAAATTTTCAAAAAAAAATCCAAAAATAATGAAAATGAATGAATTTTTGAAAA
* * ** * * * *
461201 CTAAATTATCATGAACCAAATGATGATGTTTGATGAATTTTAAAAATTGAAAACCAAATAAAATT
66 CTAAATTATCATGAAACAAATAAAAATATTTGATAAATTTTAAAAAATAAAAACCAAATAAAATT
* ****
461266 CCCTCGAAAAAAATTACAGAGTAAAAAACACCGTCTTTTGGAAAAAAAAA-G-AATTTCAAGGAA
131 CCCTCGAAAAAAATTACAGAGTAAAAAACACCGTATTCCAAAAAAAAAAAGGAAATTTCAAGGAA
* * * * * **
461329 AAAATTCAAAA-ACT-CATGAAAATGAAT-TTTTCAAAAA-TGAATTAGTATGAAATAAATAATG
196 AAAA-T-AAAACAATGAATGAAAATGAATATTTTCAAAAACTCAATTAATATAAAATAAATAAAA
*
461390 ATGTTTGATAAATTTTAAAAATTAAAAACTAAGAAAAACCCCCTCGAAAAAATTTATGAAGTGAA
259 ATATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAACCCCCTCGAAAAAATTTATGAAGTGAA
461455 AAACACCGTA
324 AAACACCGTA
461465 TTTCAGAAAAAGAGAAA-TTTCAAGGAAAAAAAT-CAAAAATGAATGAAAATGAATGAATTTTTG
1 TTTCAGAAAAAG-GAAATTTTCAA--AAAAAAATCCAAAAAT-AATGAAAATGAATGAATTTTTG
* * *
461528 AGAACTTAATTAAT-ATGAAATAAATAAAAATATTTGATAAATTTTAAAAAATAAAAACCCAAA-
62 AAAACTAAATT-ATCATGAAACAAATAAAAATATTTGATAAATTTTAAAAAATAAAAA-CCAAAT
* * * * **
461591 AAAA-TCCCTTTGAAAAAATTTATAGAGTAAAAAATATTGTATTCCAAAAAAAAAAAGGAAATTT
125 AAAATTCCC-TCGAAAAAAATTACAGAGTAAAAAACACCGTATTCCAAAAAAAAAAAGGAAATTT
* *
461655 CAAGTAAAAAATAAAACAATGAATGAAAATGAATAAATTTTTAAAAACTCAATTAATATAAAATA
189 CAAGGAAAAAATAAAACAATGAATGAAAATGAAT--ATTTTCAAAAACTCAATTAATATAAAATA
*
461720 AATAAAAATATTTGATAAATTTTAAAAATTAAAAATTAAGAAAAA
252 AATAAAAATATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAA
461765 TCCTCCCAAA
Statistics
Matches: 247, Mismatches: 38, Indels: 22
0.80 0.12 0.07
Matches are distributed among these distances:
329 17 0.07
330 14 0.06
331 114 0.46
332 11 0.04
333 27 0.11
336 9 0.04
337 55 0.22
ACGTcount: A:0.55, C:0.08, G:0.10, T:0.27
Consensus pattern (333 bp):
TTTCAGAAAAAGGAAATTTTCAAAAAAAAATCCAAAAATAATGAAAATGAATGAATTTTTGAAAA
CTAAATTATCATGAAACAAATAAAAATATTTGATAAATTTTAAAAAATAAAAACCAAATAAAATT
CCCTCGAAAAAAATTACAGAGTAAAAAACACCGTATTCCAAAAAAAAAAAGGAAATTTCAAGGAA
AAAATAAAACAATGAATGAAAATGAATATTTTCAAAAACTCAATTAATATAAAATAAATAAAAAT
ATTTGATAAATTTTAAAAATTAAAAACTAAGAAAAACCCCCTCGAAAAAATTTATGAAGTGAAAA
ACACCGTA
Found at i:467027 original size:21 final size:21
Alignment explanation
Indices: 467003--467049 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
466993 TTTGATGCTG
467003 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
467023 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
467044 ATTTTG
1 ATTTTG
467050 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:467188 original size:13 final size:13
Alignment explanation
Indices: 467170--467208 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
467160 ATAATCACCC
467170 TGTATCGATACAA
1 TGTATCGATACAA
467183 TGTATCGATACAA
1 TGTATCGATACAA
467196 TGTATCGATACAA
1 TGTATCGATACAA
467209 AGAAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:467219 original size:20 final size:20
Alignment explanation
Indices: 467194--467272 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
467184 GTATCGATAC
467194 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
467214 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
467239 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
467259 CATGTATCGATACA
1 AATGTATCGATACA
467273 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:469307 original size:15 final size:15
Alignment explanation
Indices: 469287--469317 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
469277 ATTTCGTTTG
*
469287 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
469302 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
469317 G
1 G
469318 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:471150 original size:21 final size:21
Alignment explanation
Indices: 471121--471165 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
471111 AAGTTTTCAT
*
471121 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
471141 TTTTCATTAGCCAACTTCCTTA
1 TTTTC-TTAGCCAACTTCATTA
471163 TTT
1 TTT
471166 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.22, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:473393 original size:13 final size:13
Alignment explanation
Indices: 473375--473400 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
473365 AATTTTTTTG
473375 TGTATCGATACAT
1 TGTATCGATACAT
473388 TGTATCGATACAT
1 TGTATCGATACAT
473401 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:476655 original size:27 final size:28
Alignment explanation
Indices: 476624--476678 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
476614 CTGTTTGCTA
476624 TTGTTTTCTTCTTCTTC-TT-CTTTTTTT
1 TTGTTTTCTTCTTC-TCGTTGCTTTTTTT
*
476651 TTGTTTTCTTTTTCTCGTTGCTTTTTTT
1 TTGTTTTCTTCTTCTCGTTGCTTTTTTT
476679 CCTCTTTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 2 0.08
27 15 0.60
28 8 0.32
ACGTcount: A:0.00, C:0.16, G:0.07, T:0.76
Consensus pattern (28 bp):
TTGTTTTCTTCTTCTCGTTGCTTTTTTT
Found at i:480013 original size:13 final size:13
Alignment explanation
Indices: 479998--480058 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 13
479988 CGAAGATCAG
*
479998 TGTATCGATACAG
1 TGTATCGATACAA
480011 TGTATCGATACAA
1 TGTATCGATACAA
480024 TG-A--G-T--AA
1 TGTATCGATACAA
480031 TGTATCGATACAA
1 TGTATCGATACAA
480044 TGTATCGATACAA
1 TGTATCGATACAA
480057 TG
1 TG
480059 AGTAATGTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
7 4 0.10
8 1 0.02
9 1 0.02
10 2 0.05
11 1 0.02
12 1 0.02
13 31 0.76
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:480035 original size:33 final size:33
Alignment explanation
Indices: 479998--480075 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
479988 CGAAGATCAG
*
479998 TGTATCGATACAGTGTATCGATACAATGAGTAA
1 TGTATCGATACAATGTATCGATACAATGAGTAA
480031 TGTATCGATACAATGTATCGATACAATGAGTAA
1 TGTATCGATACAATGTATCGATACAATGAGTAA
480064 TGTATCGATACA
1 TGTATCGATACA
480076 TTTTCTTGGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (33 bp):
TGTATCGATACAATGTATCGATACAATGAGTAA
Found at i:480036 original size:20 final size:20
Alignment explanation
Indices: 480011--480075 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
480001 ATCGATACAG
480011 TGTATCGATACAATGAGTAA
1 TGTATCGATACAATGAGTAA
480031 TGTATCGATAC-------AA
1 TGTATCGATACAATGAGTAA
480044 TGTATCGATACAATGAGTAA
1 TGTATCGATACAATGAGTAA
480064 TGTATCGATACA
1 TGTATCGATACA
480076 TTTTCTTGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 13 0.34
20 25 0.66
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
TGTATCGATACAATGAGTAA
Found at i:480120 original size:19 final size:19
Alignment explanation
Indices: 480096--480161 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
480086 AGTAGCTTCA
480096 TATGTATCGATACAACACT
1 TATGTATCGATACAACACT
480115 TATGTATCGAT---ACA--
1 TATGTATCGATACAACACT
*
480129 T-TGTATCGATACAGCACT
1 TATGTATCGATACAACACT
480147 TATGTATCGATACAA
1 TATGTATCGATACAA
480162 ATCGTTGACA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
13 9 0.23
14 1 0.03
16 5 0.13
18 1 0.03
19 23 0.59
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (19 bp):
TATGTATCGATACAACACT
Found at i:480135 original size:13 final size:13
Alignment explanation
Indices: 480117--480141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
480107 ACAACACTTA
480117 TGTATCGATACAT
1 TGTATCGATACAT
480130 TGTATCGATACA
1 TGTATCGATACA
480142 GCACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:480139 original size:32 final size:32
Alignment explanation
Indices: 480098--480160 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
480088 TAGCTTCATA
480098 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
*
480130 TGTATCGATACAGCACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
480161 AATCGTTGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:481162 original size:42 final size:42
Alignment explanation
Indices: 480906--481342 Score: 187
Period size: 42 Copynumber: 10.4 Consensus size: 42
480896 GATAGTAGAT
* * * * *
480906 AAAGGATAAAAGAGTCTCCC-AGGTCTAAGCCGATGGGTAGACA
1 AAAGGGTAAAAAAGTCTCCCGA-GTCAAAGTCGATGGGCAGA-A
* * * * * * *
480949 AAA-GGTAAAGAAGTCTTCTGGGTCAAAGTTGAAGGGTAGACA
1 AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGA-A
* * * * * * *
480991 AAA-AGTAAAGAAGTCTCCCGAGTCAAAGCCAACGAGCAGAC
1 AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGAA
* ** * *
481032 AAAGGGTAAAGAAGTCTCCTAAGTCAAAGTCGACGGGAAGACA
1 AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGA-A
* * * * ****
481075 AAA-GGTAAAGAAGTCTCTCGTGTCAAAG-CTAACCAACA-AA
1 AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTC-GATGGGCAGAA
*
481115 CAAAGGGTAAAAAAGTCTCCCGAGTCAAAGTTGATGGGCAGAA
1 -AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGAA
* *
481158 AAAGGGTGAAGAAA-TCTCCCG-GTTAAAG-CTGATGGGCA-AA
1 AAAGGGT-AAAAAAGTCTCCCGAGTCAAAGTC-GATGGGCAGAA
* * * *
481198 CAAAGGGTAAAAAAAATCTCTCGAGTCAAAGTCAATGGGCAGAT
1 -AAAGGGT-AAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGAA
* * * * * *** * *
481242 AAA-GATAAAAATGTCTCTCGGGTCAAAGTCAACAAGTAAAA
1 AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGAA
* * * * **
481283 AAAGGATAAAGAAGTATCCCGAGTCTAAGTCGATGGATA-AA
1 AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGAA
*
481324 TAAAGGATAAAAAAGTCTC
1 -AAAGGGTAAAAAAGTCTC
481343 TCGGGTTTAT
Statistics
Matches: 298, Mismatches: 79, Indels: 35
0.72 0.19 0.08
Matches are distributed among these distances:
40 3 0.01
41 65 0.22
42 199 0.67
43 29 0.10
44 2 0.01
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.17
Consensus pattern (42 bp):
AAAGGGTAAAAAAGTCTCCCGAGTCAAAGTCGATGGGCAGAA
Found at i:481170 original size:84 final size:83
Alignment explanation
Indices: 480946--481318 Score: 288
Period size: 84 Copynumber: 4.5 Consensus size: 83
480936 CGATGGGTAG
* * * * * * * *
480946 ACAAAAGGTAAAGAAGTCTTCTGGGTCAAAGTTGAAGGGTAGACAAAAAGTAAAGAAGTCTCCCG
1 ACAAAGGGTAAAGAAGTCTCCCGAGTCAAAGTCGATGGGCAGACAAAAGGTAAAGAAGTCTCCCG
* * * *
481011 AGTCAAAGCCAACGAGCAG
66 -GTCAAAGCTAACCAACAA
** * * *
481030 ACAAAGGGTAAAGAAGTCTCCTAAGTCAAAGTCGACGGGAAGACAAAAGGTAAAGAAGTCTCTCG
1 ACAAAGGGTAAAGAAGTCTCCCGAGTCAAAGTCGATGGGCAGACAAAAGGTAAAGAAGTCTCCCG
481095 TGTCAAAGCTAACCAACAA
66 -GTCAAAGCTAACCAACAA
* * * *
481114 ACAAAGGGTAAAAAAGTCTCCCGAGTCAAAGTTGATGGGCAGA-AAAAGGGTGAAGAAATCTCCC
1 ACAAAGGGTAAAGAAGTCTCCCGAGTCAAAGTCGATGGGCAGACAAAA-GGTAAAGAAGTCTCCC
* * ****
481178 GGTTAAAGCTGATGGGCAA
65 GGTCAAAGCTAACCAACAA
* * * * * *
481197 ACAAAGGGTAAAAAAAATCTCTCGAGTCAAAGTCAATGGGCAGA-TAAAGATAAA-AATGTCTCT
1 ACAAAGGGT-AAAGAAGTCTCCCGAGTCAAAGTCGATGGGCAGACAAAAGGTAAAGAA-GTCTC-
* *
481260 CGGGTCAAAG-TCAA-CAAGTAA
63 CCGGTCAAAGCT-AACCAA-CAA
* * * *
481281 AAAAAGGATAAAGAAGTATCCCGAGTCTAAGTCGATGG
1 ACAAAGGGTAAAGAAGTCTCCCGAGTCAAAGTCGATGG
481319 ATAAATAAAG
Statistics
Matches: 231, Mismatches: 52, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
82 2 0.01
83 57 0.25
84 172 0.74
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.17
Consensus pattern (83 bp):
ACAAAGGGTAAAGAAGTCTCCCGAGTCAAAGTCGATGGGCAGACAAAAGGTAAAGAAGTCTCCCG
GTCAAAGCTAACCAACAA
Found at i:481926 original size:317 final size:318
Alignment explanation
Indices: 481325--481986 Score: 1173
Period size: 317 Copynumber: 2.1 Consensus size: 318
481315 ATGGATAAAT
* *
481325 AAAGGATAAAAAAGTCTCTCGGGTTTATAGCTGCCCTTCTTTGTTCGTTGCTGAGAATGAAGAAT
1 AAAGGATAAAAAACTCTCTCGGGTTTATAGCTGCCCTTCTTTGTTCGTTGCTGAGAATCAAGAAT
481390 AGGACAAAGACTAAATAGACACAATTTCATTCGGGTTATAAAATGAAAGTCGCAAAGTCTAAGAA
66 AGGACAAAGACTAAATAGACACAATTTCATTCGGGTTATAAAATGAAAGTCGCAAAGTCTAAGAA
* *
481455 AATGAAACAAAAATATAAAGCATAAAATATGCACATAAACAAAATAACAAAAATGTGATCGAAAT
131 AATGAAACAAAAATATAAAGCATAAAATATGCACATAAACAAAATAACAAAAATGAGATCAAAAT
*
481520 TGGAAAAGAAATTGACTAGGACCAGACAGTCGAGTCAACAAAAGACAAAAGTAGTTATCCAAGAC
196 TGGAAAAGAAATTGACTAGGAACAGACAGTCGAGTCAACAAAAGACAAAAGTAGTTATCCAAGAC
* *
481585 TAAGTCAACAGGTAAGCAAAAGAGAAAGGAGTTTCCCAGGTCTAAGCTGACAATAGAC
261 TAAGTCAACAGGTAAGCAAAAGAGAAAGGAGTTTCCCAGGTCTAAACCGACAATAGAC
* *
481643 AAAGGATAAAAAACTCTCTCGGGTTTATAGTTGCCCTTCTTTGTTCGTTGCTGAGAATCAGGAAT
1 AAAGGATAAAAAACTCTCTCGGGTTTATAGCTGCCCTTCTTTGTTCGTTGCTGAGAATCAAGAAT
481708 AGGACAAAGACTAAATAGACACAATTTCATTCGGGTTATAAAATGAAAGTCGCAAAGTCTAAGAA
66 AGGACAAAGACTAAATAGACACAATTTCATTCGGGTTATAAAATGAAAGTCGCAAAGTCTAAGAA
481773 AATGAAAC-AAAATATAAAGCATAAAATATGCACATAAACAAAATAACAAAAATGAGATCAAAAT
131 AATGAAACAAAAATATAAAGCATAAAATATGCACATAAACAAAATAACAAAAATGAGATCAAAAT
481837 TGGAAAAGAAATTGACTAGGAACAGACAGTCGAGTCAACAAAAGACAAAAGTAGTTATCCAAGAC
196 TGGAAAAGAAATTGACTAGGAACAGACAGTCGAGTCAACAAAAGACAAAAGTAGTTATCCAAGAC
* * * * *
481902 TAAGTCGACAGGTAAGCGAAAGAGAAAGGAGTTTCTCGGGTCTAAACCGATAATAGAC
261 TAAGTCAACAGGTAAGCAAAAGAGAAAGGAGTTTCCCAGGTCTAAACCGACAATAGAC
* *
481960 AAAGGATAAAAAACTTTCTCGAGTTTA
1 AAAGGATAAAAAACTCTCTCGGGTTTA
481987 CGCTGAAGGG
Statistics
Matches: 328, Mismatches: 16, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
317 194 0.59
318 134 0.41
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.22
Consensus pattern (318 bp):
AAAGGATAAAAAACTCTCTCGGGTTTATAGCTGCCCTTCTTTGTTCGTTGCTGAGAATCAAGAAT
AGGACAAAGACTAAATAGACACAATTTCATTCGGGTTATAAAATGAAAGTCGCAAAGTCTAAGAA
AATGAAACAAAAATATAAAGCATAAAATATGCACATAAACAAAATAACAAAAATGAGATCAAAAT
TGGAAAAGAAATTGACTAGGAACAGACAGTCGAGTCAACAAAAGACAAAAGTAGTTATCCAAGAC
TAAGTCAACAGGTAAGCAAAAGAGAAAGGAGTTTCCCAGGTCTAAACCGACAATAGAC
Found at i:482040 original size:42 final size:42
Alignment explanation
Indices: 481994--482522 Score: 245
Period size: 42 Copynumber: 12.6 Consensus size: 42
481984 TTACGCTGAA
* * ** *
481994 GGGTAGACAAAGGGTAAAGAAGTCTCTTGGGTCAAAGTTAAG
1 GGGTAGACAAAAGGTAAAGAAGTCTCTTGAGTCAAAGTCGAT
* *
482036 GGGTAGACAAAAGATAAA-AAGGC-CTTCTGAGTCAAAAG-CGAT
1 GGGTAGACAAAAGGTAAAGAAGTCTC-T-TGAGTC-AAAGTCGAT
* * *** *
482078 GGGCAGACAAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGAT
1 GGGTAGACAAAAGGTAAAGAAGTCTCTTGAGTCAAAGTCGAT
* * * * * *
482120 GGGCAGACAAAGGGTAAAGAAGCCTTTTGAGTCAAAG-CTAAC
1 GGGTAGACAAAAGGTAAAGAAGTCTCTTGAGTCAAAGTC-GAT
* * * *
482162 AGGTAGATAAAGGGTAAAGAAGTCTCTTGAGTCAAAGTCGAC
1 GGGTAGACAAAAGGTAAAGAAGTCTCTTGAGTCAAAGTCGAT
* * ** * *
482204 AGGTAGAC-AAAGGTGAAGAAGTCTCCCGGGTCAAAGTTGAT
1 GGGTAGACAAAAGGTAAAGAAGTCTCTTGAGTCAAAGTCGAT
* * * * * *
482245 GGGTAGACAAAAGGTAAAGAAATCTTTTGCATTAAAACT-GAC
1 GGGTAGACAAAAGGTAAAGAAGTCTCTTG-AGTCAAAGTCGAT
** * * * * *
482287 ACGCAGACAAAAGGTAAAAAAATCTCTCGAGTCAAAGTCAAT
1 GGGTAGACAAAAGGTAAAGAAGTCTCTTGAGTCAAAGTCGAT
* * * * * * *
482329 AGGCAGATAAAAAGTAAA-AATGGCT-TTCAAGTCAAAGTCAAT
1 GGGTAGACAAAAGGTAAAGAA-GTCTCTT-GAGTCAAAGTCGAT
* * * * * *
482371 GGGCAGAC-AAAGGATAAAGAAATTTCTCGAGTCTAAGCCGAT
1 GGGTAGACAAAAGG-TAAAGAAGTCTCTTGAGTCAAAGTCGAT
* * * * *
482413 GGGTAGA-TAAAGGATAAAAAAGTCTCTCGAGTCTAGGTCGAT
1 GGGTAGACAAAAGG-TAAAGAAGTCTCTTGAGTCAAAGTCGAT
* * * * * * *
482455 GGGGAAAC-AAAGGATAAAAAAGCCACCT-AGGTCTAAGTCGAT
1 GGGTAGACAAAAGG-TAAAGAAGTCTCTTGA-GTCAAAGTCGAT
* * *
482497 GGGCAGACAAAAGATAAAAAAGTCTC
1 GGGTAGACAAAAGGTAAAGAAGTCTC
482523 CCCGGTCTAA
Statistics
Matches: 373, Mismatches: 94, Indels: 40
0.74 0.19 0.08
Matches are distributed among these distances:
40 1 0.00
41 57 0.15
42 293 0.79
43 21 0.06
44 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.19
Consensus pattern (42 bp):
GGGTAGACAAAAGGTAAAGAAGTCTCTTGAGTCAAAGTCGAT
Found at i:482128 original size:126 final size:125
Alignment explanation
Indices: 481998--482391 Score: 301
Period size: 126 Copynumber: 3.1 Consensus size: 125
481988 GCTGAAGGGT
* * * **
481998 AGACAAAGGGTAAAGAAGTCTCTTGGGTCAAAGTTAAGGGGTAGACAAAAGATAAA-AAGGCCT-
1 AGACAAAGGGTAAAGAAGCCTCTTGAGTCAAAGCTAACAGGTAGACAAAAGATAAAGAA-GCCTC
**
482061 TCTGAGTCAAAAG-CGATGGGCAGACAAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGC
65 T-TGAGTC-AAAGTCGACAGGCAGAC-AAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGC
* * * * *
482124 AGACAAAGGGTAAAGAAGCCTTTTGAGTCAAAGCTAACAGGTAGATAAAGGGTAAAGAAGTCTCT
1 AGACAAAGGGTAAAGAAGCCTCTTGAGTCAAAGCTAACAGGTAGACAAAAGATAAAGAAGCCTCT
* * * ** ** *
482189 TGAGTCAAAGTCGACAGGTAGACAAAGGTGAAGAAGTCTCCCGGGTCAAAGTTGATGGGT
66 TGAGTCAAAGTCGACAGGCAGACAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGC
* ** * * * * * * * * **
482249 AGACAAAAGGTAAAGAAATCTTTTGCA-TTAAAACTGACACGCAGACAAAAGGTAAAAAAATCTC
1 AGACAAAGGGTAAAGAAGCCTCTTG-AGTCAAAGCTAACAGGTAGACAAAAGATAAAGAAGCCTC
* * * * * * * ** * *
482313 TCGAGTCAAAGTCAATAGGCAGATAAAAAGTAAAAATGGCTTTCAAGTCAAAGTCAATGGGC
65 TTGAGTCAAAGTCGACAGGCAGA-CAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGC
*
482375 AGACAAAGGATAAAGAA
1 AGACAAAGGGTAAAGAA
482392 ATTTCTCGAG
Statistics
Matches: 212, Mismatches: 51, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
125 103 0.49
126 106 0.50
127 3 0.01
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.18
Consensus pattern (125 bp):
AGACAAAGGGTAAAGAAGCCTCTTGAGTCAAAGCTAACAGGTAGACAAAAGATAAAGAAGCCTCT
TGAGTCAAAGTCGACAGGCAGACAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGC
Found at i:482303 original size:125 final size:126
Alignment explanation
Indices: 482082--482392 Score: 304
Period size: 125 Copynumber: 2.5 Consensus size: 126
482072 AGCGATGGGC
* *
482082 AGACAAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGCAGACAAAGGGTAAAGAAGCCTTT
1 AGACAAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGCAGACAAAAGGTAAAGAAACCTTT
* * * * * * * *
482147 TGAGTCAAAGCTAACAGGTAGATAAAGGGTAAAGAAGTCTCTTGAGTCAAAGTCGACAGGT
66 TGAGTCAAAACTAACACGCAGACAAAAGGTAAAAAAATCTCTCGAGTCAAAGTCGACAGGT
* * ** ** * *
482208 AGAC-AAAGGTGAAGAAGTCTCCCGGGTCAAAGTTGATGGGTAGACAAAAGGTAAAGAAATCTTT
1 AGACAAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGCAGACAAAAGGTAAAGAAACCTTT
* * * * *
482272 TGCA-TTAAAACTGACACGCAGACAAAAGGTAAAAAAATCTCTCGAGTCAAAGTCAATAGGC
66 TG-AGTCAAAACTAACACGCAGACAAAAGGTAAAAAAATCTCTCGAGTCAAAGTCGACAGGT
* * * * ** * *
482333 AGATAAAAAGTAAAAATGGCTTTCAAGTCAAAGTCAATGGGCAGAC-AAAGGATAAAGAAA
1 AGACAAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGCAGACAAAAGG-TAAAGAAA
482393 TTTCTCGAGT
Statistics
Matches: 146, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
125 104 0.71
126 42 0.29
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.18
Consensus pattern (126 bp):
AGACAAAAGGTAAAAAAGTCTCCCAAGTCAAAGCCGATGGGCAGACAAAAGGTAAAGAAACCTTT
TGAGTCAAAACTAACACGCAGACAAAAGGTAAAAAAATCTCTCGAGTCAAAGTCGACAGGT
Found at i:482875 original size:30 final size:30
Alignment explanation
Indices: 482841--483072 Score: 112
Period size: 30 Copynumber: 7.7 Consensus size: 30
482831 ATAAGTAAAT
*
482841 ATTTGACCGAATATAATCAAGAAGGGTGAG
1 ATTTGACCGAATACAATCAAGAAGGGTGAG
* * * * ** *
482871 ATTTGATCGAGTACAGTCAA-ATGAGGAAAA
1 ATTTGACCGAATACAATCAAGAAG-GGTGAG
* * * * * *
482901 ACTTGACCAAATACAGTCAAGCACGAGTGAA
1 ATTTGACCGAATACAATCAAG-AAGGGTGAG
* *
482932 ATTTGACCGAATACAATTAA-ATGAGGAT-AG
1 ATTTGACCGAATACAATCAAGA--AGGGTGAG
* *
482962 ACTTGACCGAATACAATCAAGAGGGGTGAG
1 ATTTGACCGAATACAATCAAGAAGGGTGAG
* * * * * **
482992 ATTTGATCGAGTATACTCAA-ATGAGGAAAG
1 ATTTGACCGAATACAATCAAGAAG-GGTGAG
* * * *
483022 ACTTGACTGAATACAATCAAGCAGGGGTGAA
1 ATTTGACCGAATACAATCAAG-AAGGGTGAG
*
483053 ATTTGATCGAATACAATCAA
1 ATTTGACCGAATACAATCAA
483073 ATAAGGATAG
Statistics
Matches: 143, Mismatches: 49, Indels: 19
0.68 0.23 0.09
Matches are distributed among these distances:
29 8 0.06
30 89 0.62
31 42 0.29
32 4 0.03
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (30 bp):
ATTTGACCGAATACAATCAAGAAGGGTGAG
Found at i:482907 original size:60 final size:60
Alignment explanation
Indices: 482843--483575 Score: 506
Period size: 60 Copynumber: 12.3 Consensus size: 60
482833 AAGTAAATAT
* * *
482843 TTGACCGAATATAATCAAGAAGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAAAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* * * * * * * * * *
482903 TTGACCAAATACAGTCAAGCACGAGTGAAATTTGACCGAATACAATTAAATGAGGATAGAC
1 TTGACCGAATACAATCAAG-AGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* *
482964 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTATACTCAAATGAGGAAAGAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* * * * * * *
483024 TTGACTGAATACAATCAAGCAGGGGTGAAATTTGATCGAATACAATCAAATAAGGATAGTC
1 TTGACCGAATACAATCAAG-AGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* * * * * * * *
483085 TTGATCGAATACAGTCAAAAGGAGTAAGATTTGATTGAGTATAGTCAAATGAGAAAAGAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* * * * * * * * * *
483145 TTGACCGAATATAGTCAGGAGGGGTAAGATTTGACCAAGTATAGCCAAATAAGGAAAAAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* * * * * * * **
483205 TTGACCAAATATAGTCAA-ACGAGGGTGAAATTTGATCGAATATAGTCAAATAAGGATAA-TT
1 TTGACCGAATACAATCAAGA-G-GGGTGAGATTTGATCGAGTACAGTCAAATGAGGA-AAGAC
* * * **
483266 TTGATCGAATACAATTAAGAGGGGTGAGATTTGATTGAAAACAGTCAAATGAGGAAAGAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* * * * * * * * * *
483326 TTAATCAAATATAGTCAAGCAGGGATAAAATTTGATC---T---GTCAAATAAAGAAAGAC
1 TTGACCGAATACAATCAAG-AGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
* * **
483381 TTTACCAAATACAATCAAGAGGGGAAAGATTTGA-CTGAGTACAGTCAAATGAGGAAAGAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATC-GAGTACAGTCAAATGAGGAAAGAC
* * * * * * * * * *
483441 TTGACCAAATATAGTTAAGCGAGGTTGAAATTTGA-C-CG-A-A-TAAAATGAGGAAAGTC
1 TTGACCGAATACAATCAAGAG-GGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
** * * * *
483497 TTGAATGAATACAATCAAAAGGGGTAAAGATTTGA-CAAAGTACAGTTAAATGAGGAAAGAC
1 TTGACCGAATACAATCAAGAGGGGT-GAGATTTGATC-GAGTACAGTCAAATGAGGAAAGAC
*
483558 TTGACCGAGTACAATCAA
1 TTGACCGAATACAATCAA
483576 ATGAGGAAAG
Statistics
Matches: 521, Mismatches: 130, Indels: 43
0.75 0.19 0.06
Matches are distributed among these distances:
53 1 0.00
54 12 0.02
55 33 0.06
56 35 0.07
57 2 0.00
58 2 0.00
59 5 0.01
60 236 0.45
61 192 0.37
62 3 0.01
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.23
Consensus pattern (60 bp):
TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAGAC
Found at i:482995 original size:121 final size:121
Alignment explanation
Indices: 482843--483278 Score: 441
Period size: 121 Copynumber: 3.6 Consensus size: 121
482833 AAGTAAATAT
* * *
482843 TTGACCGAATATAATCAAGAAGGGTGAGATTTGATCGAGTACAGTCAAATGAGGAAAAACTTGAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTATAGTCAAATGAGGAAAAACTTGAC
* * *
482908 CAAATACAGTCAAGCACGAGTGAAATTTGACCGAATACAATTAAATGAGGATAGAC
66 CGAATACAGTCAAGCACGAGTGAAATTTGACCGAATACAATCAAATAAGGATAGAC
* *
482964 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTATACTCAAATGAGGAAAGACTTGAC
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTATAGTCAAATGAGGAAAAACTTGAC
* * * * * *
483029 TGAATACAATCAAGCAGGGGTGAAATTTGATCGAATACAATCAAATAAGGATAGTC
66 CGAATACAGTCAAGCACGAGTGAAATTTGACCGAATACAATCAAATAAGGATAGAC
* * * * * *
483085 TTGATCGAATACAGTCAAAAGGAGTAAGATTTGATTGAGTATAGTCAAATGA-GAAAAGACTTGA
1 TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTATAGTCAAATGAGGAAAA-ACTTGA
* * * * * ** * *
483149 CCGAATATAGTC-AGGAGGGGT-AAGATTTGACC-AAGTATAGCCAAATAAGGAAAAAC
65 CCGAATACAGTCAAGCACGAGTGAA-ATTTGACCGAA-TACAATCAAATAAGGATAGAC
* * * * * * * **
483205 TTGACCAAATATAGTCAA-ACGAGGGTGAAATTTGATCGAATATAGTCAAATAAGGATAATTTTG
1 TTGACCGAATACAATCAAGA-G-GGGTGAGATTTGATCGAGTATAGTCAAATGAGGAAAAACTTG
*
483269 ATCGAATACA
64 ACCGAATACA
483279 ATTAAGAGGG
Statistics
Matches: 262, Mismatches: 47, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
119 5 0.02
120 50 0.19
121 203 0.77
122 4 0.02
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (121 bp):
TTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTATAGTCAAATGAGGAAAAACTTGAC
CGAATACAGTCAAGCACGAGTGAAATTTGACCGAATACAATCAAATAAGGATAGAC
Found at i:483119 original size:30 final size:30
Alignment explanation
Indices: 482841--483118 Score: 103
Period size: 30 Copynumber: 9.2 Consensus size: 30
482831 ATAAGTAAAT
* *
482841 ATTTGACCGAATATAATCAAGAAGG-GTGAG
1 ATTTGACCGAATACAATCAA-AAGGAGTAAG
* * * *
482871 ATTTGATCGAGTACAGTCAAATGAGGA--AAA
1 ATTTGACCGAATACAATCAAA--AGGAGTAAG
* * * * *
482901 ACTTGACCAAATACAGTCAAGCACGAGTGAA-
1 ATTTGACCGAATACAATCAA-AAGGAGT-AAG
*
482932 ATTTGACCGAATACAATTAAATGAGGA-T-AG
1 ATTTGACCGAATACAATCAAA--AGGAGTAAG
* * * *
482962 ACTTGACCGAATACAATCAAGAGGGGTGAG
1 ATTTGACCGAATACAATCAAAAGGAGTAAG
* * * *
482992 ATTTGATCGAGTATACTCAAATGAGGA--AAG
1 ATTTGACCGAATACAATCAAA--AGGAGTAAG
* * * *
483022 ACTTGACTGAATACAATCAAGCAGGGGTGAA-
1 ATTTGACCGAATACAATCAA-AAGGAGT-AAG
*
483053 ATTTGATCGAATACAATCAAATAAGGA-T-AG
1 ATTTGACCGAATACAATC-AA-AAGGAGTAAG
* *
483083 -TCTTGATCGAATACAGTCAAAAGGAGTAAG
1 AT-TTGACCGAATACAATCAAAAGGAGTAAG
483113 ATTTGA
1 ATTTGA
483119 TTGAGTATAG
Statistics
Matches: 179, Mismatches: 45, Indels: 48
0.66 0.17 0.18
Matches are distributed among these distances:
28 8 0.04
29 14 0.08
30 105 0.59
31 37 0.21
32 15 0.08
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (30 bp):
ATTTGACCGAATACAATCAAAAGGAGTAAG
Found at i:483169 original size:181 final size:181
Alignment explanation
Indices: 482828--483360 Score: 552
Period size: 181 Copynumber: 2.9 Consensus size: 181
482818 CAAATATGAT
* * * * * *
482828 CAAATAAGTAAATATTTGACCGAATATAATCAAG-AAGGGTGAGATTTGATCGAGTACAGTCAAA
1 CAAATAAGGAAAAACTTGACCGAATATAATCAAGCAGGGGTGAAATTTGATCGAATACAGTCAAA
* * * * * * * ** * *
482892 TGAGGAAAAACTTGACCAAATACAGTCAAGCACGAGTGAA-ATTTGACCGAATACAATTAAATGA
66 TAAGGATAATCTTGATCGAATACAGTCAA-AAGGAGT-AAGATTTGATTGAATACAGTCAAATGA
* * * * * *
482956 GGATAGACTTGACCGAATACAATCAAGAGGGGTGAGATTTGATCGAGTATA-C
129 GGAAAGACTTGACCGAATATAGTCAAGAGGGGTAAGATTTGACCAAGTATAGC
* * * * *
483008 TCAAATGAGGAAAGACTTGACTGAATACAATCAAGCAGGGGTGAAATTTGATCGAATACAATCAA
1 -CAAATAAGGAAAAACTTGACCGAATATAATCAAGCAGGGGTGAAATTTGATCGAATACAGTCAA
* * *
483073 ATAAGGATAGTCTTGATCGAATACAGTCAAAAGGAGTAAGATTTGATTGAGTATAGTCAAATGAG
65 ATAAGGATAATCTTGATCGAATACAGTCAAAAGGAGTAAGATTTGATTGAATACAGTCAAATGAG
* *
483138 AAAAGACTTGACCGAATATAGTCAGGAGGGGTAAGATTTGACCAAGTATAGC
130 GAAAGACTTGACCGAATATAGTCAAGAGGGGTAAGATTTGACCAAGTATAGC
* * * *
483190 CAAATAAGGAAAAACTTGACCAAATATAGTCAAAC-GAGGGTGAAATTTGATCGAATATAGTCAA
1 CAAATAAGGAAAAACTTGACCGAATATAATCAAGCAG-GGGTGAAATTTGATCGAATACAGTCAA
* * * * * * *
483254 ATAAGGATAATTTTGATCGAATACAATTAAGAGGGGTGAGATTTGATTGAAAACAGTCAAATGAG
65 ATAAGGATAATCTTGATCGAATACAGTCAAAAGGAGTAAGATTTGATTGAATACAGTCAAATGAG
* * * * *
483319 GAAAGACTTAATCAAATATAGTCAAGCAGGGATAAAATTTGA
130 GAAAGACTTGACCGAATATAGTCAAG-AGGGGTAAGATTTGA
483361 TCTGTCAAAT
Statistics
Matches: 289, Mismatches: 58, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
180 3 0.01
181 223 0.77
182 63 0.22
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (181 bp):
CAAATAAGGAAAAACTTGACCGAATATAATCAAGCAGGGGTGAAATTTGATCGAATACAGTCAAA
TAAGGATAATCTTGATCGAATACAGTCAAAAGGAGTAAGATTTGATTGAATACAGTCAAATGAGG
AAAGACTTGACCGAATATAGTCAAGAGGGGTAAGATTTGACCAAGTATAGC
Found at i:483271 original size:30 final size:30
Alignment explanation
Indices: 483051--483276 Score: 131
Period size: 30 Copynumber: 7.5 Consensus size: 30
483041 AGCAGGGGTG
* *
483051 AAATTTGATCGAATACAATCAAATAAGGAT
1 AAATTTGATCGAATATAGTCAAATAAGGAT
* *
483081 -AGTCTTGATCGAATACAGTC-AA-AAGGAGT
1 AAAT-TTGATCGAATATAGTCAAATAAGGA-T
* * * *
483110 AAGATTTGATTGAGTATAGTCAAATGA-GAA
1 AA-ATTTGATCGAATATAGTCAAATAAGGAT
* * ** * *
483140 AAGACTTGACCGAATATAGTC-AGGAGGGGT
1 AA-ATTTGATCGAATATAGTCAAATAAGGAT
* * *
483170 AAGATTTGA-CCAAGTATAGCCAAATAAGGAA
1 AA-ATTTGATCGAA-TATAGTCAAATAAGGAT
* * * ** *
483201 AAACTTGACCAAATATAGTCAAACGAGGGT
1 AAATTTGATCGAATATAGTCAAATAAGGAT
483231 GAAATTTGATCGAATATAGTCAAATAAGGAT
1 -AAATTTGATCGAATATAGTCAAATAAGGAT
*
483262 AATTTTGATCGAATA
1 AAATTTGATCGAATA
483277 CAATTAAGAG
Statistics
Matches: 145, Mismatches: 40, Indels: 22
0.70 0.19 0.11
Matches are distributed among these distances:
28 5 0.03
29 9 0.06
30 92 0.63
31 38 0.26
32 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (30 bp):
AAATTTGATCGAATATAGTCAAATAAGGAT
Found at i:483425 original size:115 final size:115
Alignment explanation
Indices: 483139--483559 Score: 308
Period size: 115 Copynumber: 3.6 Consensus size: 115
483129 TCAAATGAGA
* * * * * * ** * * * *
483139 AAAGACTTGACCGAATATAGTCAGGAGGGGTAAGATTTGACCAAGTATAGCCAAATAAGGAAAAA
1 AAAGACTTGAACAAATACAATCAAGAGGGGAAAGATTTGACTGAGTACAGTCAAATGAGGAAAGA
* * * * * *
483204 CTTGACCAAATATAGTCAAACGAGGGTGAAATTTGATCGAATATAGTCAAATAAGG
66 CTTAACCAAATATAGTCAAGCGAGGATAAAATTTGACCG---ATA---AAATAAAG
** * * * ** * **
483260 ATAA-TTTTGATCGAATACAATTAAGAGGGGTGAGATTTGATTGAAAACAGTCAAATGAGGAAAG
1 A-AAGACTTGAACAAATACAATCAAGAGGGGAAAGATTTGACTGAGTACAGTCAAATGAGGAAAG
* * *
483324 ACTTAATCAAATATAGTCAAGC-AGGGATAAAATTTGATCTG-TCAAATAAAG
65 ACTTAACCAAATATAGTCAAGCGA-GGATAAAATTTGA-CCGATAAAATAAAG
* *
483375 AAAGACTTTACCAAATACAATCAAGAGGGGAAAGATTTGACTGAGTACAGTCAAATGAGGAAAGA
1 AAAGACTTGAACAAATACAATCAAGAGGGGAAAGATTTGACTGAGTACAGTCAAATGAGGAAAGA
* * * * * *
483440 CTTGACCAAATATAGTTAAGCGAGGTTGAAATTTGACCGAATAAAATGAGG
66 CTTAACCAAATATAGTCAAGCGAGGATAAAATTTGACCG-ATAAAATAAAG
* ** * ** *
483491 AAAGTCTTGAATGAATACAATCAAAAGGGGTAAAGATTTGACAAAGTACAGTTAAATGAGGAAAG
1 AAAGACTTGAACAAATACAATCAAGAGGGG-AAAGATTTGACTGAGTACAGTCAAATGAGGAAAG
483556 ACTT
65 ACTT
483560 GACCGAGTAC
Statistics
Matches: 237, Mismatches: 55, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
114 4 0.02
115 87 0.37
116 32 0.14
117 35 0.15
118 1 0.00
120 1 0.00
121 74 0.31
122 3 0.01
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (115 bp):
AAAGACTTGAACAAATACAATCAAGAGGGGAAAGATTTGACTGAGTACAGTCAAATGAGGAAAGA
CTTAACCAAATATAGTCAAGCGAGGATAAAATTTGACCGATAAAATAAAG
Found at i:483437 original size:30 final size:30
Alignment explanation
Indices: 483403--483591 Score: 95
Period size: 30 Copynumber: 6.4 Consensus size: 30
483393 AATCAAGAGG
*
483403 GGAAAGATTTGACTGAGTACAGTCAAATGA
1 GGAAAGATTTGACCGAGTACAGTCAAATGA
* * * * * **
483433 GGAAAGACTTGACCAAATATAGTTAAGCGA
1 GGAAAGATTTGACCGAGTACAGTCAAATGA
* *
483463 GGTTGAA-ATTTGACC--G-A-A-TAAAATGA
1 GG--AAAGATTTGACCGAGTACAGTCAAATGA
** * * * *
483489 GGAAAG-TCTTGAATGAATACAATCAAAAGG
1 GGAAAGAT-TTGACCGAGTACAGTCAAATGA
** *
483519 GGTAAAGATTTGACAAAGTACAGTTAAATGA
1 GG-AAAGATTTGACCGAGTACAGTCAAATGA
* *
483550 GGAAAGACTTGACCGAGTACAATCAAATGA
1 GGAAAGATTTGACCGAGTACAGTCAAATGA
*
483580 GGAAAGACTTGA
1 GGAAAGATTTGA
483592 TCAATTACAA
Statistics
Matches: 114, Mismatches: 34, Indels: 22
0.67 0.20 0.13
Matches are distributed among these distances:
24 3 0.03
25 4 0.04
26 7 0.06
27 1 0.01
28 2 0.02
29 1 0.01
30 66 0.58
31 27 0.24
32 3 0.03
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (30 bp):
GGAAAGATTTGACCGAGTACAGTCAAATGA
Found at i:483601 original size:30 final size:30
Alignment explanation
Indices: 483483--483604 Score: 113
Period size: 30 Copynumber: 4.0 Consensus size: 30
483473 TGACCGAATA
* *
483483 AAATGAGGAAAGTCTTGAATGAA-TACAATC
1 AAATGAGGAAAGACTTG-ATCAAGTACAATC
* * * * *
483513 AAAAGGGGTAAAGATTTGA-CAAAGTACAGTT
1 AAATGAGG-AAAGACTTGATC-AAGTACAATC
* *
483544 AAATGAGGAAAGACTTGACCGAGTACAATC
1 AAATGAGGAAAGACTTGATCAAGTACAATC
*
483574 AAATGAGGAAAGACTTGATCAATTACAATC
1 AAATGAGGAAAGACTTGATCAAGTACAATC
483604 A
1 A
483605 TGCGAGGGTG
Statistics
Matches: 72, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
30 53 0.74
31 19 0.26
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (30 bp):
AAATGAGGAAAGACTTGATCAAGTACAATC
Found at i:483623 original size:61 final size:61
Alignment explanation
Indices: 483558--483726 Score: 157
Period size: 61 Copynumber: 2.8 Consensus size: 61
483548 GAGGAAAGAC
* *
483558 TTGACCGAGTACAATCAAATGAGGAAAGACTTGATCAATTACAATC-ATGCGAGGGT-GAAAT
1 TTGACCAAGTACAATCAAATGAGGAAAGACTTGATCAATTACAATCAAT-AG-GGGTAGAAAT
* * * * * * * *
483619 TTGACCAAATACAGTCAAATGAGGAAGGTCTTAACTGAA-TACAGTCAATAGGGGTAGAGAT
1 TTGACCAAGTACAATCAAATGAGGAAAGACTTGA-TCAATTACAATCAATAGGGGTAGAAAT
* * * *
483680 TTAACTAAGTACAATCAAATGAGGAAAGACTTGACCAA-TACAGTCAA
1 TTGACCAAGTACAATCAAATGAGGAAAGACTTGATCAATTACAATCAA
483727 GCAAGGATGG
Statistics
Matches: 86, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
60 15 0.17
61 66 0.77
62 5 0.06
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.22
Consensus pattern (61 bp):
TTGACCAAGTACAATCAAATGAGGAAAGACTTGATCAATTACAATCAATAGGGGTAGAAAT
Found at i:484535 original size:9 final size:9
Alignment explanation
Indices: 484521--484558 Score: 58
Period size: 9 Copynumber: 4.0 Consensus size: 9
484511 AGAAGAAACC
484521 AAAAAAAGA
1 AAAAAAAGA
484530 AAAAAAAGAA
1 AAAAAAAG-A
484540 AAAAAGAAGA
1 AAAAA-AAGA
484550 AAAAAAAGA
1 AAAAAAAGA
484559 GAATGGGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 12 0.44
10 12 0.44
11 3 0.11
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:484543 original size:11 final size:11
Alignment explanation
Indices: 484521--484561 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
484511 AGAAGAAACC
484521 AAAAAAAG--A
1 AAAAAAAGAAA
484530 AAAAAAAGAAA
1 AAAAAAAGAAA
*
484541 AAAAGAAGAAA
1 AAAAAAAGAAA
*
484552 AAAAAGAGAA
1 AAAAAAAGAA
484562 TGGGGCATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 8 0.30
11 19 0.70
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:484543 original size:17 final size:18
Alignment explanation
Indices: 484521--484554 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
484511 AGAAGAAACC
484521 AAAAAAAGAA-AAAAAAG
1 AAAAAAAGAAGAAAAAAG
484538 AAAAAAAGAAGAAAAAA
1 AAAAAAAGAAGAAAAAA
484555 AAGAGAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAAAAAGAAGAAAAAAG
Found at i:484549 original size:20 final size:19
Alignment explanation
Indices: 484521--484558 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
484511 AGAAGAAACC
484521 AAAAAAAGAAAAAAAAGAA
1 AAAAAAAGAAAAAAAAGAA
484540 AAAAAGAAGAAAAAAAAGA
1 AAAAA-AAGAAAAAAAAGA
484559 GAATGGGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAAAAAAAGAA
Found at i:485185 original size:43 final size:43
Alignment explanation
Indices: 485125--485396 Score: 245
Period size: 42 Copynumber: 6.4 Consensus size: 43
485115 GTCTCCTTCT
* *
485125 AGAC-TTCTTTATCTTTTGTCTATCCGTCAGCTTAGACCCAAG
1 AGACTTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACCCAGG
* * *
485167 AGACTTTCTTTATGTTTTGTCTGCCCGTCGGCTTAGACCC-GAG
1 AGACTTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACCCAG-G
* * * * * *
485210 AAATTTTCTTTATCTTTTATCTA-TCGTC-GCTGAAACCC-GG
1 AGACTTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACCCAGG
* * * * *
485250 AAGACTTTTTTTATCTTTTGTCTGCCCGTCGGCTCAGACCTAGG
1 -AGACTTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACCCAGG
* * * *
485294 AGAC-TTCTTTATCTATTATCTGCCCGTCAG-TTCAGACCTAGG
1 AGACTTTCTTTATCTTTTGTCTACCCGTCAGCTT-AGACCCAGG
* * *
485336 AGAC-TTCTTCATCTTTTGTCTACCCGTCAGCTCAGACCCTGG
1 AGACTTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACCCAGG
*
485378 AGACTTTCTATATCTTTTG
1 AGACTTTCTTTATCTTTTG
485397 AAGACACCTA
Statistics
Matches: 185, Mismatches: 36, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
40 1 0.01
41 28 0.15
42 80 0.43
43 74 0.40
44 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.39
Consensus pattern (43 bp):
AGACTTTCTTTATCTTTTGTCTACCCGTCAGCTTAGACCCAGG
Done.