Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2744999
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.26
Warning! 506982 characters in sequence are not A, C, G, or T
File 4 of 15
Found at i:634982 original size:29 final size:29
Alignment explanation
Indices: 634942--635238 Score: 325
Period size: 28 Copynumber: 10.6 Consensus size: 29
634932 CACCAACTTG
634942 TGTGGGCTTTTGAAAGGTTGCCACT-ACCT
1 TGTGGGCTTTTGAAAGGTTGCCACTGA-CT
634971 TGTGGGCTTTTGAAAGGTTGCCACT-ACCT
1 TGTGGGCTTTTGAAAGGTTGCCACTGA-CT
** *
635000 TGTCAGC-TTTG-AAGGTTACCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
*
635027 TGTGGGC-TTTG-AAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* *
635054 TGTGGGC-TTTGAGAATG-TGCCACTAACT
1 TGTGGGCTTTTGA-AAGGTTGCCACTGACT
*
635082 TATGGG-TTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
** *
635109 TGTGGGCTTTAAAAAGG-TGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
635137 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* * *
635165 TATGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* *
635194 TGTGGGCTTTTG-AAGATTGCCAATGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
*
635222 TGTGTGC-TTTGAAAGGT
1 TGTGGGCTTTTGAAAGGT
635239 AAGGAATGTC
Statistics
Matches: 230, Mismatches: 28, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.01
27 70 0.30
28 91 0.40
29 66 0.29
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.34
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGTTGCCACTGACT
Found at i:636407 original size:17 final size:19
Alignment explanation
Indices: 636373--636407 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
636363 GTGTACTTTT
636373 TGACAAACAAGTGATTAAG
1 TGACAAACAAGTGATTAAG
636392 TGACAAA-AAG-GATTAA
1 TGACAAACAAGTGATTAA
636408 TTTTGAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.51, C:0.09, G:0.20, T:0.20
Consensus pattern (19 bp):
TGACAAACAAGTGATTAAG
Found at i:636688 original size:23 final size:23
Alignment explanation
Indices: 636662--636711 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
636652 TTCGGACCCT
*
636662 TTTTGTTGTCTGTTTTTGTATTG
1 TTTTGTTGTATGTTTTTGTATTG
* * * *
636685 TTTTTTTTTATTTTTTTGTTTTG
1 TTTTGTTGTATGTTTTTGTATTG
636708 TTTT
1 TTTT
636712 TTTTTGTTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.04, C:0.02, G:0.14, T:0.80
Consensus pattern (23 bp):
TTTTGTTGTATGTTTTTGTATTG
Found at i:636689 original size:1 final size:1
Alignment explanation
Indices: 636685--636738 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
636675 TTTTGTATTG
* * * * * *
636685 TTTTTTTTTATTTTTTTGTTTTGTTTTTTTTTGTTTGTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
636739 ACAGAGGATG
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (1 bp):
T
Found at i:636690 original size:13 final size:12
Alignment explanation
Indices: 636674--636737 Score: 53
Period size: 13 Copynumber: 5.4 Consensus size: 12
636664 TTGTTGTCTG
636674 TTTTTGTATTGTT
1 TTTTTGTATT-TT
*
636687 TTTTTTTATTTT
1 TTTTTGTATTTT
* *
636699 TTTGTTTTGTTTT
1 TTT-TTGTATTTT
*
636712 TTTTTG--TTTG
1 TTTTTGTATTTT
636722 TTTTTGT-TTTT
1 TTTTTGTATTTT
636733 TTTTT
1 TTTTT
636738 TACAGAGGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
10 9 0.20
11 8 0.18
12 7 0.16
13 20 0.45
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.86
Consensus pattern (12 bp):
TTTTTGTATTTT
Found at i:636691 original size:14 final size:14
Alignment explanation
Indices: 636674--636735 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
636664 TTGTTGTCTG
636674 TTTTTGTATTGTTT
1 TTTTTGTATTGTTT
*
636688 TTTTT-TATTTTTT
1 TTTTTGTATTGTTT
*
636701 TGTTTTGT-TTTTTT
1 T-TTTTGTATTGTTT
*
636715 TTGTTTGTTTTTGTTT
1 TT-TTTG-TATTGTTT
636731 TTTTT
1 TTTTT
636736 TTTACAGAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
13 9 0.22
14 20 0.49
15 5 0.12
16 7 0.17
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.85
Consensus pattern (14 bp):
TTTTTGTATTGTTT
Found at i:636711 original size:20 final size:20
Alignment explanation
Indices: 636674--636738 Score: 78
Period size: 20 Copynumber: 3.1 Consensus size: 20
636664 TTGTTGTCTG
*
636674 TTTTTGTATTGTTTTTTTTTATT
1 TTTTTGT-TT-TTGTTTTTT-TT
636697 TTTTTG-TTTTGTTTTTTTT
1 TTTTTGTTTTTGTTTTTTTT
*
636716 TGTTTGTTTTTGTTTTTTTT
1 TTTTTGTTTTTGTTTTTTTT
636736 TTT
1 TTT
636739 ACAGAGGATG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
19 7 0.18
20 23 0.61
21 2 0.05
23 6 0.16
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.86
Consensus pattern (20 bp):
TTTTTGTTTTTGTTTTTTTT
Found at i:636712 original size:23 final size:25
Alignment explanation
Indices: 636672--636738 Score: 95
Period size: 23 Copynumber: 2.8 Consensus size: 25
636662 TTTTGTTGTC
*
636672 TGTTTTTGTATTGTTTTTTTTT-AT
1 TGTTTTTGTTTTGTTTTTTTTTGAT
*
636696 T-TTTTTGTTTTGTTTTTTTTTGTT
1 TGTTTTTGTTTTGTTTTTTTTTGAT
636720 TGTTTTTGTTTT-TTTTTTT
1 TGTTTTTGTTTTGTTTTTTT
636739 ACAGAGGATG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.49
24 10 0.26
25 10 0.26
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.85
Consensus pattern (25 bp):
TGTTTTTGTTTTGTTTTTTTTTGAT
Found at i:636735 original size:10 final size:10
Alignment explanation
Indices: 636674--636736 Score: 67
Period size: 10 Copynumber: 6.5 Consensus size: 10
636664 TTGTTGTCTG
*
636674 TTTTTGTATT
1 TTTTTGTTTT
*
636684 GTTTT-TTTT
1 TTTTTGTTTT
*
636693 TATTT-TTTT
1 TTTTTGTTTT
*
636702 GTTTTGTTTT
1 TTTTTGTTTT
*
636712 TTTTTGTTTG
1 TTTTTGTTTT
636722 TTTTTGTTTT
1 TTTTTGTTTT
636732 TTTTT
1 TTTTT
636737 TTACAGAGGA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
9 13 0.30
10 30 0.70
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.86
Consensus pattern (10 bp):
TTTTTGTTTT
Found at i:650501 original size:13 final size:13
Alignment explanation
Indices: 650483--650510 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
650473 ATACAAAGAT
650483 CAATGTATCGATA
1 CAATGTATCGATA
650496 CAATGTATCGATA
1 CAATGTATCGATA
650509 CA
1 CA
650511 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:650506 original size:33 final size:33
Alignment explanation
Indices: 650464--650530 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
650454 AAAATTCCCA
650464 AATGTATCGATACAAAG-ATCAATGTATCGATAC
1 AATGTATCGATACAAAGAAT-AATGTATCGATAC
**
650497 AATGTATCGATACATTGAATAATGTATCGATAC
1 AATGTATCGATACAAAGAATAATGTATCGATAC
650530 A
1 A
650531 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 29 0.94
34 2 0.06
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (33 bp):
AATGTATCGATACAAAGAATAATGTATCGATAC
Found at i:652573 original size:21 final size:20
Alignment explanation
Indices: 652547--652664 Score: 84
Period size: 21 Copynumber: 5.8 Consensus size: 20
652537 ATACAAGTGA
*
652547 AAATGTATCGACACATTATAT
1 AAATGTATCGATACATTAT-T
*
652568 AAATGTATCGATGCA--ATT
1 AAATGTATCGATACATTATT
652586 CAAATGTATCGATACATTATGT
1 -AAATGTATCGATACATTAT-T
* *
652608 AAATATATTGATACA--ATT
1 AAATGTATCGATACATTATT
* *
652626 CAGAATGTATCAATACATCCA-T
1 -A-AATGTATCGATACAT-TATT
*
652648 AAATATATCGATACATT
1 AAATGTATCGATACATT
652665 GAGTTCAACA
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
18 2 0.03
19 19 0.25
20 24 0.31
21 29 0.38
22 2 0.03
23 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (20 bp):
AAATGTATCGATACATTATT
Found at i:652603 original size:40 final size:40
Alignment explanation
Indices: 652547--652662 Score: 144
Period size: 40 Copynumber: 2.9 Consensus size: 40
652537 ATACAAGTGA
* * *
652547 AAATGTATCGACACATTATATAAATGTATCGATGCAATTC
1 AAATGTATCGATACATTATATAAATATATCGATACAATTC
* *
652587 AAATGTATCGATACATTATGTAAATATATTGATACAATTC
1 AAATGTATCGATACATTATATAAATATATCGATACAATTC
* **
652627 AGAATGTATCAATACA-TCCATAAATATATCGATACA
1 A-AATGTATCGATACATTATATAAATATATCGATACA
652663 TTGAGTTCAA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 52 0.80
41 13 0.20
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (40 bp):
AAATGTATCGATACATTATATAAATATATCGATACAATTC
Found at i:654723 original size:5 final size:5
Alignment explanation
Indices: 654713--654756 Score: 52
Period size: 5 Copynumber: 8.0 Consensus size: 5
654703 TTTAATTGAA
654713 ATTTT ATTTT AATTTT AGGTTTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT -ATTTT A---TTTT ATTTT ATTTT ATTTT ATTTT
654757 TAAACTAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 25 0.71
6 5 0.14
8 5 0.14
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:656927 original size:153 final size:153
Alignment explanation
Indices: 656639--657027 Score: 467
Period size: 153 Copynumber: 2.5 Consensus size: 153
656629 TCATCTTTAC
** * * * * *
656639 TTATCATTTTCGTGTCCTTTAAGGTTACCAAGATACTTTCACATTGAAGGTATATCTTAGGGGCA
1 TTATCATTTTCAAGTCCTTTAAGGTTACTAGGATACTTTCACGTTGAAGGTATACCTTAAGGGCA
* * *
656704 TTTTAGTAATTTTAT-TTAGAACTGAGTCCTAGGTAGTCATTAGGATGCTTTTATGCTAAAAGTG
66 TTTTAGTAATTTT-TCTTAAAACTGAGTCCTAGGTAGTCAGTAGGATGCTTTTATGCCAAAAGTG
*
656768 TACATTTCGGATAGGTTTATCGTTT
130 TACATTTAGGATAGGTTTATC-TTT
* * ** *
656793 TT-TCATTTTCAAGTCCTTTAAGATCACTAGGATACTTTCACGTCAAAGGTATACCTTATGGGCA
1 TTATCATTTTCAAGTCCTTTAAGGTTACTAGGATACTTTCACGTTGAAGGTATACCTTAAGGGCA
* * * **
656857 TTTTAGTAGTTTTTCTTAAAACTGAGTCTTAGGTAGTCAGTCGGATGCTTTTATGCCAATGGTGT
66 TTTTAGTAATTTTTCTTAAAACTGAGTCCTAGGTAGTCAGTAGGATGCTTTTATGCCAAAAGTGT
*
656922 GCATTTAGGATAGGTTTATCTTT
131 ACATTTAGGATAGGTTTATCTTT
* * * * *
656945 TTATAATCTTTTCACGTCCCTGAAGGTTACTAGGATACTTTCATGTTGAAGGTATACCTTAAGGG
1 TTATCA--TTTTCAAGTCCTTTAAGGTTACTAGGATACTTTCACGTTGAAGGTATACCTTAAGGG
* *
657010 TATTTTGGTAATTTTTCT
64 CATTTTAGTAATTTTTCT
657028 AGAACCAAAT
Statistics
Matches: 197, Mismatches: 34, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
152 6 0.03
153 126 0.64
154 2 0.01
155 63 0.32
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (153 bp):
TTATCATTTTCAAGTCCTTTAAGGTTACTAGGATACTTTCACGTTGAAGGTATACCTTAAGGGCA
TTTTAGTAATTTTTCTTAAAACTGAGTCCTAGGTAGTCAGTAGGATGCTTTTATGCCAAAAGTGT
ACATTTAGGATAGGTTTATCTTT
Found at i:661128 original size:52 final size:53
Alignment explanation
Indices: 661071--661170 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 53
661061 AATTATTCAA
* *
661071 AATCGGGGATACTCCAACCCCGCTTTTATTTTC-AAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
* * *
661123 AATCGGGGATACTTCAACTCCGATTTTATTTCCAAAAACACTAATTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
661171 TCACAATTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 29 0.69
53 13 0.31
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (53 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
Found at i:661246 original size:28 final size:27
Alignment explanation
Indices: 661183--661246 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
661173 ACAATTAGGA
**
661183 ATACTCCAACCCCGTTAATCATCGGGG
1 ATACTCCAACCCCGTTAATCAGAGGGG
* *
661210 ATACTCCAACCCCGTTATTTCCGAGGGG
1 ATACTCCAACCCCGTTA-ATCAGAGGGG
661238 ATACTCCAA
1 ATACTCCAA
661247 TCTCGCCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 17 0.53
28 15 0.47
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (27 bp):
ATACTCCAACCCCGTTAATCAGAGGGG
Found at i:661309 original size:51 final size:51
Alignment explanation
Indices: 661254--661352 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
661244 CAATCTCGCC
* *
661254 TTTATTTCTAAAAT-ATTAATTTCTCATAATCGGGGATACTCCAACCCCAGT
1 TTTATTT-TAAAATCATTAATTTCTCACAATCAGGGATACTCCAACCCCAGT
* * *
661305 TTTATTTTCAAATCATTGATTTTTCACAATCAGGGATACTCCAACCCC
1 TTTATTTTAAAATCATTAATTTCTCACAATCAGGGATACTCCAACCCC
661353 GTTATTTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 5 0.12
51 37 0.88
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.37
Consensus pattern (51 bp):
TTTATTTTAAAATCATTAATTTCTCACAATCAGGGATACTCCAACCCCAGT
Found at i:671034 original size:20 final size:20
Alignment explanation
Indices: 671009--671061 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
670999 AATTTAAGCA
*
671009 ATGTATTGATACATTCACCT
1 ATGTATCGATACATTCACCT
671029 ATGTATCGATACATTCACCT
1 ATGTATCGATACATTCACCT
671049 ATGTATCGATACA
1 ATGTATCGATACA
671062 ATTTCTTTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTCACCT
Found at i:673592 original size:52 final size:52
Alignment explanation
Indices: 673514--673694 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
673504 CGAAATATGA
*
673514 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
673566 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
* *
673618 AAATTTGCCTGCATGTATCTATACATTTTATAGTGTATCGATACATCTGAGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
673670 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
673695 AAGATTAGTG
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 125 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
Found at i:673721 original size:13 final size:13
Alignment explanation
Indices: 673703--673727 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
673693 CAAAGATTAG
673703 TGTATCGATACAA
1 TGTATCGATACAA
673716 TGTATCGATACA
1 TGTATCGATACA
673728 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:673794 original size:19 final size:18
Alignment explanation
Indices: 673770--673867 Score: 63
Period size: 19 Copynumber: 5.8 Consensus size: 18
673760 TAGCTTACAT
673770 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
*
673789 TGTATCAATAC--A--T-
1 TGTATCGATACAAACTTA
673802 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
673821 CGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
673834 TGTATCGATACAACACGTTA
1 TGTATCGATACAA-AC-TTA
*
673854 TGTATAGATACAAA
1 TGTATCGATACAAA
673868 TCGTTGAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 26
0.66 0.05 0.28
Matches are distributed among these distances:
13 20 0.33
14 2 0.03
16 4 0.07
18 1 0.02
19 22 0.36
20 12 0.20
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:673806 original size:32 final size:32
Alignment explanation
Indices: 673765--673858 Score: 152
Period size: 32 Copynumber: 2.9 Consensus size: 32
673755 GGCAGTAGCT
*
673765 TACATTGTATCGATACAAAACTTATGTATCAA
1 TACATTGTATCGATACAACACTTATGTATCAA
* *
673797 TACATTGTATCGATACAACACTTACGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCAA
673829 TACATTGTATCGATACAACACGTTATGTAT
1 TACATTGTATCGATACAACAC-TTATGTAT
673859 AGATACAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 50 0.88
33 7 0.12
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCAA
Found at i:673840 original size:13 final size:13
Alignment explanation
Indices: 673789--673845 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
673779 ACAAAACTTA
*
673789 TGTATCAATACAT
1 TGTATCGATACAT
673802 TGTATCGATACAACACT
1 TGTATCGAT---ACA-T
673819 TACGTATCGATACAT
1 T--GTATCGATACAT
673834 TGTATCGATACA
1 TGTATCGATACA
673846 ACACGTTATG
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 19 0.51
15 2 0.05
16 6 0.16
17 2 0.05
19 8 0.22
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:674636 original size:52 final size:49
Alignment explanation
Indices: 674598--675609 Score: 581
Period size: 49 Copynumber: 21.3 Consensus size: 49
674588 GGTCAGCGTC
*
674598 ATTAGACTTAAAGAAGAGAAGAATGCCAATGTGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGAAGA-AAG--TGCCAATGTGCTGATTCAAGGCCAGCGAT
*
674650 ATTAAACTTAAAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * * *
674699 ATTGGACTTAAA-AATGACAAAG-GCACCAATATGCTGATTCATGGCCAACAAT
1 ATTAAACTTAAAGAA-G--AAAGTG--CCAATGTGCTGATTCAAGGCCAGCGAT
** * *
674751 ATTGGACTT--A-AAG---GTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
674794 ATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGA-AGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * * *
674843 ATTGGACTT--A-AAG---GTGACAATGTGCTGATTCAAGGCTAGCTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * *
674886 ATTGGACTTAAAGATA-AAGGTGCCAATATGCTTATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGA-AGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
674935 ATTGGACTT--A-AAG---GTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
674978 ATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGA-AGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * *
675027 ATTGGACTTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGA--AGAAAG-TGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * *
675079 ATTGGACTT--A-AAG---GTGCCAATGTGCTGATTCAAGGCCAACTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
675122 ATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGA-AGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
675171 ATTGGACTT--A-AAG---GTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * * *
675214 ATTGGATTTAAAGCTA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAG-AAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
675263 ATTGGACTT--A-AAG---GTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
675306 ATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGA-AGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * *
675355 ATTGGACTTAAAGATGATAAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTAAACTTAAAGA--AGAAAG-TGCCAATGTGCTGATTCAAGGCCAGCGAT
** * *
675407 ATTGGACTT--A-AAG---GTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * * *
675450 ATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAACGAAT
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCG-AT
** * *
675500 ATTGGACTT-----A-AAAGTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
** * * *
675543 ATTGGATTTAAAGAA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
1 ATTAAACTTAAAGAAGAAA-GTGCCAATGTGCTGATTCAAGGCCAGCGAT
**
675592 ATTGGACTTAGAAGAAGA
1 ATTAAACTTA-AAGAAGA
675610 TGCCACCAAC
Statistics
Matches: 800, Mismatches: 87, Indels: 147
0.77 0.08 0.14
Matches are distributed among these distances:
43 247 0.31
44 30 0.04
45 12 0.01
46 10 0.01
47 12 0.01
48 5 0.01
49 326 0.41
50 23 0.03
51 14 0.02
52 121 0.15
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (49 bp):
ATTAAACTTAAAGAAGAAAGTGCCAATGTGCTGATTCAAGGCCAGCGAT
Found at i:674853 original size:92 final size:92
Alignment explanation
Indices: 674621--675601 Score: 1062
Period size: 92 Copynumber: 10.4 Consensus size: 92
674611 AAGAGAAGAA
* **
674621 TGCCAATGTGCTGATTCAAGGCCAGCGATATTAAACTTAAAGATGAAAGTGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G---GTGCCAATGTGCTGATT
* *
674686 CAAGGCCAGCGATATTGGACTTAAAAATGACAAAGG
60 CAAGGCCAGCGACATTGGACTT--AAA-GATAAAGG
** * * *
674722 CACCAATATGCTGATTCATGGCCAACAATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
*
674787 CAGCTACATTGGACTTAAAGATAAAGG
66 CAGCGACATTGGACTTAAAGATAAAGG
*
674814 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGACAATGTGCTGATTCAAGGC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
* *
674879 TAGCTACATTGGACTTAAAGATAAAGG
66 CAGCGACATTGGACTTAAAGATAAAGG
*
674906 TGCCAATATGCTTATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
*
674971 CAGCTACATTGGACTTAAAGATAAAGG
66 CAGCGACATTGGACTTAAAGATAAAGG
* *
674998 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGACGCCAATATGCTG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-----G-TGCCAATGTGCTG
*
675063 ATTCAAGGCCAGCGATATTGGAC-T-----TAAAGG
57 ATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGG
* * * * *
675093 TGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATT
*
675158 CAAGGCCAGCGATATTGGAC-T-----TAAAGG
60 CAAGGCCAGCGACATTGGACTTAAAGATAAAGG
* * * * *
675185 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGCTAAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGA-CT-----TAAAGGTGCCAATGTGCTGATT
*
675250 CAAGGCCAGCGATATTGGAC-T-----TAAAGG
60 CAAGGCCAGCGACATTGGACTTAAAGATAAAGG
* * * *
675277 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATT
* *
675342 CAAGGCCAGCGATATTGGACTTAAAGATGATAAAGA
60 CAAGGCCAGCGACATTGGACTT-AA-A-GATAAAGG
*
675378 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
* *
675443 CAGCTACATTGGACTTAAAGATGAAGG
66 CAGCGACATTGGACTTAAAGATAAAGG
* *
675470 TGCCAATATGCTGATTCAAGGCCAACGAATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCG-ATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGG
* * *
675535 CCAGCTACATTGGATTTAAAGAAAAAGG
65 CCAGCGACATTGGACTTAAAGATAAAGG
*
675563 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
675602 GAAGAAGATG
Statistics
Matches: 799, Mismatches: 54, Indels: 63
0.87 0.06 0.07
Matches are distributed among these distances:
92 473 0.59
93 94 0.12
94 3 0.00
95 117 0.15
96 1 0.00
98 2 0.00
99 2 0.00
100 7 0.01
101 100 0.13
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (92 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGC
CAGCGACATTGGACTTAAAGATAAAGG
Found at i:675057 original size:236 final size:233
Alignment explanation
Indices: 674621--675606 Score: 1204
Period size: 236 Copynumber: 4.2 Consensus size: 233
674611 AAGAGAAGAA
* ** *
674621 TGCCAATGTGCTGATTCAAGGCCAGCGATATTAAACTTAAAGATGAAA-GTGCCAATGTGCTGAT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-AAAGGTGCCAATATGCTGAT
* * * *
674685 TCAAGGCCAGCGATATTGGACTTAAAAATGACAAAG-GCACCAATATGCTGATTCATGGCCAACA
65 TCAAGGCCAGCGATATTGGACTT--AAA-G-----GTG--CCAATGTGCTGATTCAAGGCCAGCT
* * * *
674749 ATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
120 ACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA
674808 T-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
185 TGAAA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
* * * *
674857 TGACAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTTATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
674922 CAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
66 CAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
674987 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGACG
131 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG--AAAG-TG
675052 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
193 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
* *
675093 TGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
*
675158 CAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTT
66 CAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
675223 AAAGCTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G---GTGCCA
131 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGCCA
* * *
675282 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
196 ATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGG
* * **
675326 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATAAAGACGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-GATAAAGGTGCCAATATGCTG
675391 ATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
63 ATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
* *
675456 CTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAACGAATATTGGACTT----A--AAAGT
128 CTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCG-ATATTGGACTTAAAGATGAAAGT
* * * *
675515 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGAAAAAGG
192 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT------AAAGG
* * *
675563 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAGAAGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA-AAGA
675607 AGATGCCACC
Statistics
Matches: 679, Mismatches: 39, Indels: 65
0.87 0.05 0.08
Matches are distributed among these distances:
227 61 0.09
228 4 0.01
229 1 0.00
231 1 0.00
233 89 0.13
234 6 0.01
235 10 0.01
236 417 0.61
237 90 0.13
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (233 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGCCA
ATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
Found at i:675218 original size:328 final size:328
Alignment explanation
Indices: 674621--675601 Score: 1730
Period size: 328 Copynumber: 3.0 Consensus size: 328
674611 AAGAGAAGAA
* * ** *
674621 TGCCAATGTGCTGATTCAAGGCCAGCGATATTAAACTTAAAGATGAAA-GTGCCAATGTGCTGAT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAGGTGCCAATATGCTGAT
* * * * * *
674685 TCAAGGCCAGCGATATTGGACTTAAAAATGACAAAGGCACCAATATGCTGATTCATGGCCAACAA
65 TCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGA
674750 TATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
130 TATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* *
674815 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGACAATGTGCTGATTCAAGGCT
195 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCC
* *
674880 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGGACTTA
260 AGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
674945 AAGG
325 AAGG
674949 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
675014 CAAGGCCAGCGATATTGGACTTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
66 CAAGGCCAGCGATATTGGACTTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
*
675079 ATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTG
131 ATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTG
675144 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
196 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
*
675209 GCTACATTGGATTTAAAGCTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA
261 GCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA
675274 AGG
326 AGG
675277 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
*
675342 CAAGGCCAGCGATATTGGACTTAAAGATGATAAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
66 CAAGGCCAGCGATATTGGACTTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
*
675407 ATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTG
131 ATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTG
* *
675472 CCAATATGCTGATTCAAGGCCAACGAATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCC
196 CCAATATGCTGATTCAAGGCCAGCG-ATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCC
* *
675537 AGCTACATTGGATTTAAAGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
260 AGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
675602 GAAGAAGATG
Statistics
Matches: 626, Mismatches: 25, Indels: 3
0.96 0.04 0.00
Matches are distributed among these distances:
327 3 0.00
328 523 0.84
329 100 0.16
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (328 bp):
TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGACTTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGAT
ATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTG
CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
GCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA
AGG
Found at i:675665 original size:29 final size:30
Alignment explanation
Indices: 675623--676018 Score: 384
Period size: 29 Copynumber: 13.6 Consensus size: 30
675613 CACCAACTTG
**
675623 TGTGGGCTTTTGAAAAGGTTG-CACCAACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
*
675652 TGTGTGCTTTTG--AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* * * *
675680 TGTGGGCTTTTGAAGA-GATACCACTGAGT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* * * *
675709 TATGGGCTTTGGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* *
675739 TGTGGGCTTTGGAAAA-GATGCCACTGACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* *
675768 TGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* *
675798 TGTGGGCTTTTGAAAA-GATACCACTGACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* * *
675827 TATGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* *
675857 TGTGGGC-TTTGAAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* * * *
675886 TGTGGGCTTTAGAAAA-GATGCCATTAACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
** * * *
675915 TGTGGGCTTCGGAAAAGGGTGCCATTAACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* *
675945 TGTGGGCTTTGGAAAA-GATGCCACTGACT
1 TGTGGGCTTTTGAAAAGGTTGCCACTGACT
* *
675974 TGTGGGCTTTGGAAAA--TATGCCATTGACT
1 TGTGGGCTTTTGAAAAGGT-TGCCACTGACT
676003 TGTGGGC-TTTGAAAAG
1 TGTGGGCTTTTGAAAAG
676019 AAAAAGGTGC
Statistics
Matches: 314, Mismatches: 43, Indels: 20
0.83 0.11 0.05
Matches are distributed among these distances:
27 7 0.02
28 24 0.08
29 180 0.57
30 103 0.33
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (30 bp):
TGTGGGCTTTTGAAAAGGTTGCCACTGACT
Found at i:675740 original size:59 final size:59
Alignment explanation
Indices: 675664--676018 Score: 482
Period size: 59 Copynumber: 6.1 Consensus size: 59
675654 TGTGCTTTTG
* * * * * *
675664 AAGGTTGCCACTGACTTGTGGGCTTTTGAAGAGATACCACTGAGTTATGGGCTTTGGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGGAA
*
675723 AAGGGTGCCACTAACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGGAA
* * *
675782 AAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACTTATGGGCTTTGGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGGAA
* *
675841 AAGGGTGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTTAGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGGAA
* * * * * * *
675900 AA-GATGCCATTAACTTGTGGGCTTCGGAAAAGGGTGCCATTAACTTGTGGGCTTTGGAA
1 AAGGGTGCCACTGACTTGTGGGCTTTGGAAAA-GATGCCACTGACTTGTGGGCTTTGGAA
* * *
675959 AA-GATGCCACTGACTTGTGGGCTTTGGAAAATATGCCATTGACTTGTGGGCTTT-GAA
1 AAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGGAA
676016 AAG
1 AAG
676019 AAAAAGGTGC
Statistics
Matches: 263, Mismatches: 31, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
57 5 0.02
58 44 0.17
59 214 0.81
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (59 bp):
AAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGGAA
Found at i:675776 original size:88 final size:87
Alignment explanation
Indices: 675623--676019 Score: 467
Period size: 88 Copynumber: 4.5 Consensus size: 87
675613 CACCAACTTG
* * * * * * *
675623 TGTGGGCTTTTGAAAAGGTTG-CACCAACTTGTGTGCTTTTG-AAGGTTGCCACTGACTTGTGGG
1 TGTGGGCTTTGGAAAA-GATGCCACTAACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGG
* * * *
675686 CTTTTGAAGAGATACCACTGAGT
65 CTTTGGAAAAGATGCCACTGACT
* *
675709 TATGGGCTTTGGAAAAGGGTGCCACTAACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGG
1 TGTGGGCTTTGGAAAA-GATGCCACTAACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGG
*
675774 CTTTGGAAAAGGGTGCCACTGACT
65 CTTTGGAAAA-GATGCCACTGACT
* * * * *
675798 TGTGGGCTTTTGAAAAGATACCACTGACTTATGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGG
1 TGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGGAAAA-GATGCCACTGACTTGTGGG
*
675863 CTTTGAAAAAGATGCCACTGACT
65 CTTTGGAAAAGATGCCACTGACT
* * * * * *
675886 TGTGGGCTTTAGAAAAGATGCCATTAACTTGTGGGCTTCGGAAAAGGGTGCCATTAACTTGTGGG
1 TGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGGAAAA-GATGCCACTGACTTGTGGG
675951 CTTTGGAAAAGATGCCACTGACT
65 CTTTGGAAAAGATGCCACTGACT
* * *
675974 TGTGGGCTTTGGAAAATATGCCATTGACTTGTGGGCTTT-GAAAAGA
1 TGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGGAAAAGA
676020 AAAAGGTGCC
Statistics
Matches: 271, Mismatches: 36, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
86 19 0.07
87 22 0.08
88 179 0.66
89 51 0.19
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (87 bp):
TGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTGGGC
TTTGGAAAAGATGCCACTGACT
Found at i:676903 original size:23 final size:23
Alignment explanation
Indices: 676873--676917 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
676863 TGATAGGAAT
676873 CTGATCTGATTTACTTTTCTAGC
1 CTGATCTGATTTACTTTTCTAGC
676896 CTGATCTGATTTACTTTTCTAG
1 CTGATCTGATTTACTTTTCTAG
676918 TCAACTTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.49
Consensus pattern (23 bp):
CTGATCTGATTTACTTTTCTAGC
Found at i:677534 original size:1 final size:1
Alignment explanation
Indices: 677530--677618 Score: 70
Period size: 1 Copynumber: 89.0 Consensus size: 1
677520 TTTTGTTGTG
* * * * ** * *
677530 TTTTTTTCTTTGTTTTTTTTTTTTTTTTGTTTTTTGTTTTTTGATTTTTTTTGTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * *
677595 TTTTGGTTTATTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTT
677619 GTGGAGGATG
Statistics
Matches: 67, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.02, C:0.01, G:0.10, T:0.87
Consensus pattern (1 bp):
T
Found at i:677543 original size:17 final size:14
Alignment explanation
Indices: 677528--677620 Score: 82
Period size: 15 Copynumber: 6.2 Consensus size: 14
677518 CTTTTTGTTG
677528 TGTTTTTTTCTTTGTT
1 TGTTTTTTT-TTT-TT
677544 T-TTTTTTTTTTTT
1 TGTTTTTTTTTTTT
*
677557 TGTTTTTTGTTTTT
1 TGTTTTTTTTTTTT
677571 TGATTTTTTTTGTTTT
1 TG-TTTTTTTT-TTTT
677587 T-TTGTTTTTTTTGGTT
1 TGTT-TTTTTTTT--TT
*
677603 TATTTGTTTTTTTTT
1 TGTTT-TTTTTTTTT
677618 TGT
1 TGT
677621 GGAGGATGCC
Statistics
Matches: 66, Mismatches: 3, Indels: 17
0.77 0.03 0.20
Matches are distributed among these distances:
13 3 0.05
14 20 0.30
15 24 0.36
16 10 0.15
17 9 0.14
ACGTcount: A:0.02, C:0.01, G:0.12, T:0.85
Consensus pattern (14 bp):
TGTTTTTTTTTTTT
Found at i:677553 original size:18 final size:17
Alignment explanation
Indices: 677519--677618 Score: 98
Period size: 17 Copynumber: 5.9 Consensus size: 17
677509 TTCCGGACCC
* *
677519 TTTTTGTTGTGTTTTTT
1 TTTTTGTTTTTTTTTTT
*
677536 TCTTTGTTTTTTTTTTT
1 TTTTTGTTTTTTTTTTT
*
677553 TTTTTG---TTTTTTGT
1 TTTTTGTTTTTTTTTTT
*
677567 TTTTTGATTTTTTTTGTT
1 TTTTTG-TTTTTTTTTTT
*
677585 TTTTTGTTTTTTTTGGTT
1 TTTTTGTTTTTTTT-TTT
*
677603 TATTTGTTTTTTTTTT
1 TTTTTGTTTTTTTTTT
677619 GTGGAGGATG
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
14 13 0.19
17 28 0.41
18 28 0.41
ACGTcount: A:0.02, C:0.01, G:0.12, T:0.85
Consensus pattern (17 bp):
TTTTTGTTTTTTTTTTT
Found at i:677578 original size:31 final size:30
Alignment explanation
Indices: 677519--677618 Score: 112
Period size: 31 Copynumber: 3.2 Consensus size: 30
677509 TTCCGGACCC
* *
677519 TTTTTGTTGTGTTTTTTTCTTTGTTTTTTTT
1 TTTTTTTTGT-TTTTTTTCTTTGATTTTTTT
*
677550 TTTTTTTTGTTTTTTGTTTTTTGATTTTTTT
1 TTTTTTTTGTTTTTT-TTCTTTGATTTTTTT
* *
677581 TGTTTTTTTGTTTTTTTTGGTTT-ATTTGTTT
1 T-TTTTTTTGTTTTTTTT-CTTTGATTTTTTT
677612 TTTTTTT
1 TTTTTTT
677619 GTGGAGGATG
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
30 11 0.18
31 33 0.54
32 17 0.28
ACGTcount: A:0.02, C:0.01, G:0.12, T:0.85
Consensus pattern (30 bp):
TTTTTTTTGTTTTTTTTCTTTGATTTTTTT
Found at i:681082 original size:52 final size:52
Alignment explanation
Indices: 681004--681152 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 52
680994 CGAAATATGA
* * * *
681004 AAATTTGCTTGCATGTTTCAATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTAAATAGTGTATCGATACATCTGGGC
** *
681056 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTAAATAGTGTATCGATACATCTGGGC
* *
681108 AAACTTGCCTGCATGTATCGATACA-AAAATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTAAAT-AGTGTATCGATACA
681153 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTAAATAGTGTATCGATACATCTGGGC
Found at i:681200 original size:26 final size:24
Alignment explanation
Indices: 681152--681214 Score: 87
Period size: 26 Copynumber: 2.7 Consensus size: 24
681142 GTATCGATAC
681152 AATGTATCGATAC---TTTTGAGT
1 AATGTATCGATACATTTTTTGAGT
681173 AATGTATCGATACATTTTTTGGCAGT
1 AATGTATCGATACATTTTTT-G-AGT
681199 AATGTATCGATACATT
1 AATGTATCGATACATT
681215 GTATCGATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
21 13 0.35
24 4 0.11
25 1 0.03
26 19 0.51
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (24 bp):
AATGTATCGATACATTTTTTGAGT
Found at i:681219 original size:13 final size:13
Alignment explanation
Indices: 681201--681225 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
681191 TTGGCAGTAA
681201 TGTATCGATACAT
1 TGTATCGATACAT
681214 TGTATCGATACA
1 TGTATCGATACA
681226 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:682171 original size:55 final size:52
Alignment explanation
Indices: 682088--682575 Score: 338
Period size: 49 Copynumber: 9.9 Consensus size: 52
682078 GAAAAGTGAT
* * * * * *
682088 AAAA-ATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAG
1 AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-G
* * * *
682140 AAAAAAGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG
1 --AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
* *
682194 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G
1 AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
** * *
682242 ----G-TGCCAATGTGCTGATTCAAGGCCAGTTACATTGGACTTAAAGAT-G
1 AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
* * *
682288 AAGAATG-TGCCAATATGCTGATTCAAGGCCAGTTACATTGGACTTAAAGAT-G
1 AA-AA-GATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
* * *
682340 AAGAATG-TGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A--G
1 AA-AA-GATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
** * *
682389 ----G-TGCCAATGTGCTGATTCAATGCCAGCTACATTGGACTTAAAGAT-G
1 AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
* ** * * *
682435 --AAGGTGCCAATGTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT--
1 AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
* * *
682483 -AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGAT--
1 AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
* * * *
682532 -AAAGGTGCCAATATGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTA
682576 GAAGGGTTGC
Statistics
Matches: 377, Mismatches: 40, Indels: 39
0.83 0.09 0.09
Matches are distributed among these distances:
43 69 0.18
44 5 0.01
45 2 0.01
46 2 0.01
48 2 0.01
49 126 0.33
50 2 0.01
51 4 0.01
52 124 0.33
54 5 0.01
55 36 0.10
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAAGATGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGG
Found at i:682318 original size:95 final size:95
Alignment explanation
Indices: 682155--682575 Score: 430
Period size: 95 Copynumber: 4.3 Consensus size: 95
682145 AGATGTCAAC
*
682155 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT--AAAAGGTGCCAATATGCTGATTCAAG
*
682220 GCCAGCTATATTGGACTT-A-AAGGTGCCAAT
64 GCCAGCTACATTGGACTTAAGAAGGTGCCAAT
* *
682250 GTGCTGATTCAAGGCCAGTTACATTGGACTTAAAGATGAAGAATGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AA-AAGGTGCCAATATGCTGATTCAAG
* *
682315 GCCAGTTACATTGGACTTAAAGATGAAGAATGTGTCAAT
64 GCCAGCTACATTGGACTT--A-A-GAAG---GTGCCAAT
* * * * *
682354 ATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T-AAAGGTGCCAATGTGCTGATTCAATGC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAAGGTGCCAATATGCTGATTCAAGGC
682412 CAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
66 CAGCTACATTGGACTT--A-A-GAAGGTGCCAAT
* * *
682446 GTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAGGTGCCAATATGCTAATTCAAGGC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAAGGTGCCAATATGCTGATTCAAGGC
*
682510 CAGCTATATTGGACTTAAAGATAAAGGTGCCAAT
66 CAGCTACATTGGACTT-AAG---AAGGTGCCAAT
* * * *
682544 ATGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTA
682576 GAAGGGTTGC
Statistics
Matches: 278, Mismatches: 29, Indels: 35
0.81 0.08 0.10
Matches are distributed among these distances:
92 31 0.11
93 1 0.00
94 3 0.01
95 123 0.44
96 2 0.01
97 2 0.01
98 79 0.28
99 1 0.00
101 3 0.01
103 1 0.00
104 32 0.12
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (95 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAAGGTGCCAATATGCTGATTCAAGGC
CAGCTACATTGGACTTAAGAAGGTGCCAAT
Found at i:682363 original size:147 final size:143
Alignment explanation
Indices: 682156--682575 Score: 592
Period size: 147 Copynumber: 2.9 Consensus size: 143
682146 GATGTCAACG
*
682156 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAAAGGTGCCAATATGCTGATTCAAGG
*
682221 CCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGTTACATTGGACTTAAAGA
65 CCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
682286 TGAAGAATGTGCCAATA
130 TGAAG---GTGCCAATA
* * *
682303 TGCTGATTCAAGGCCAGTTACATTGGACTTAAAGATGAAGAATGTGTCAATATGCTGATTCAAGG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA-AAGGTGCCAATATGCTGATTCAAGG
* *
682368 CCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAATGCCAGCTACATTGGACTTAAAGA
65 CCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
*
682433 TGAAGGTGCCAATG
130 TGAAGGTGCCAATA
* * *
682447 TGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT--AAAGGTGCCAATATGCTAATTCAAGGC
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTCAAGGC
* * * *
682510 CAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAGGCCAGCTATATTGGGCTT
66 CAGCTATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
682575 A
125 A
682576 GAAGGGTTGC
Statistics
Matches: 246, Mismatches: 20, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
141 36 0.15
142 2 0.01
144 41 0.17
146 3 0.01
147 164 0.67
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (143 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTCAAGGC
CAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
GAAGGTGCCAATA
Found at i:682442 original size:49 final size:49
Alignment explanation
Indices: 682156--682575 Score: 495
Period size: 49 Copynumber: 8.6 Consensus size: 49
682146 GATGTCAACG
*
682156 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
* *
682208 TGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
682251 TGCTGATTCAAGGCCAGTTACATTGGACTTAAAGATGAAGAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAG---GTGCCAATA
* *
682303 TGCTGATTCAAGGCCAGTTACATTGGACTTAAAGATGAAGAATGTGTCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAG---GTGCCAATA
* * *
682355 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
682398 TGCTGATTCAATGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
682447 TGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
682496 TGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
682545 TGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
682576 GAAGGGTTGC
Statistics
Matches: 326, Mismatches: 27, Indels: 33
0.84 0.07 0.09
Matches are distributed among these distances:
43 73 0.22
46 3 0.01
47 2 0.01
48 2 0.01
49 132 0.40
52 114 0.35
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
Found at i:682619 original size:33 final size:35
Alignment explanation
Indices: 682575--682644 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
682565 TATTGGGCTT
682575 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
682609 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
682643 AG
1 AG
682645 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:682699 original size:35 final size:35
Alignment explanation
Indices: 682642--683231 Score: 483
Period size: 34 Copynumber: 17.9 Consensus size: 35
682632 GGGCTTTAGG
* *
682642 AAGGGAGAAAGA-TGCCACGGAGTTGTGGACTTAA
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
682676 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAA
682712 AA--GAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AA
682746 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AA
682783 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AA
*
682820 AAGGGAAAAAGAGTGCCACGGAGTTGTGGACTT-A
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
* *
682854 AAGATGAAAAA-AGTACCACGGAGTTGTGGGCTTAA
1 AAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
*
682889 AA--G-----G-GTGCCACGGAGTTGTGGGCTTAG
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
*
682916 AA-GGAAAAAGAGTGCCA-GAAAGTTGTGGGCTT--
1 AAGGGAAAAAGAGTGCCACG-GAGTTGTGGGCTTAA
*
682948 ----TAAAAAGAGTGCCACGGAGTTGTGGGCTT-A
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
* *
682978 AAGATGAAAAA-AGTGCCACGGAGTTGTGGGCTTTA
1 AAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
* * *
683013 AAGATGAAAAA-AGTACCACAGAGTTGTGGGCTTAA
1 AAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
* *
683048 AA--G-----G-GTGCCACAGAGTTGTGGGCTTAG
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
* *
683075 AA-GGAAAAAGAGTGCCACAGAGTTATGGGCTT--
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
* *
683107 ----TAAAAAGAGTG-CACGGAGTTATGGGCTT-A
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
* *
683136 AAGATGAAAAA-AGTGTCACGGAGTTGTGGGCTT--
1 AAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
*
683169 ----TAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AA
*
683202 AA--GAAGAAG-GTGCCACGGAGTTGTGGGCTT
1 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
683232 TGAAAAAGAT
Statistics
Matches: 483, Mismatches: 26, Indels: 95
0.80 0.04 0.16
Matches are distributed among these distances:
27 46 0.10
28 23 0.05
29 54 0.11
30 3 0.01
32 2 0.00
33 32 0.07
34 145 0.30
35 71 0.15
36 14 0.03
37 93 0.19
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (35 bp):
AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAA
Found at i:682972 original size:63 final size:62
Alignment explanation
Indices: 682825--683014 Score: 271
Period size: 63 Copynumber: 3.0 Consensus size: 62
682815 TTGAAAAGGG
* *
682825 AAAAAGAGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTACCACGGAGTTGTGGGC-TT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGA-GAAAAAAGTGCCACGGAGTTGTGGGCTTT
* *
682887 -AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAG-GAAAAAGAGTGCCA-GAAAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTA-AAGAGAAAAA-AGTGCCACG-GAGTTGTGGGCTTT
682949 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGA-GAAAAAAGTGCCACGGAGTTGTGGGCTTT
683012 AAA
1 AAA
683015 GATGAAAAAA
Statistics
Matches: 114, Mismatches: 6, Indels: 15
0.84 0.04 0.11
Matches are distributed among these distances:
60 7 0.06
61 42 0.37
62 8 0.07
63 50 0.44
64 7 0.06
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (62 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
Found at i:683079 original size:159 final size:159
Alignment explanation
Indices: 682649--683172 Score: 662
Period size: 159 Copynumber: 3.2 Consensus size: 159
682639 AGGAAGGGAG
* * *
682649 AAAGATGCCACGGAGTTGTGGACTTAAAAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAG-TGCCACGGAGTTGTGGACTTTAAAGATGAAAAA-AGTACCACGGAGTTGTGGGC-TTAAA
* *
682713 AGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACG-GAGTTGTGGGC
63 AG-----GGTGCCACGGAGTTGTGGGC-TT-AGAA-GGAAAAAGAGTGCCA-GAGAGTTGTGGGC
*
682777 TTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAA-AGGGAAA
119 TTT--------AAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAGA-TGAAA
682828 AAGAGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTACCACGGAGTTGTGGGCTTAAAAG
1 AA-AGTGCCACGGAGTTGTGGACTTTAAAGATGAAAAAAGTACCACGGAGTTGTGGGCTTAAAAG
*
682892 GGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCAGAAAGTTGTGGGCTTTAAAAAGAG
65 GGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCAGAGAGTTGTGGGCTTTAAAAAGAG
682957 TGCCACGGAGTTGTGGGCTTAAAGATGAAA
130 TGCCACGGAGTTGTGGGCTTAAAGATGAAA
* *
682987 AAAGTGCCACGGAGTTGTGGGCTTTAAAGATGAAAAAAGTACCACAGAGTTGTGGGCTTAAAAGG
1 AAAGTGCCACGGAGTTGTGGACTTTAAAGATGAAAAAAGTACCACGGAGTTGTGGGCTTAAAAGG
* * *
683052 GTGCCACAGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTATGGGCTTTAAAAAGAGT
66 GTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCAGAGAGTTGTGGGCTTTAAAAAGAGT
*
683117 G-CACGGAGTTATGGGCTTAAAGATGAAA
131 GCCACGGAGTTGTGGGCTTAAAGATGAAA
* *
683145 AAAGTGTCACGGAGTTGTGGGCTTTAAA
1 AAAGTGCCACGGAGTTGTGGACTTTAAA
683173 AAGAGTGCCA
Statistics
Matches: 325, Mismatches: 15, Indels: 31
0.88 0.04 0.08
Matches are distributed among these distances:
158 72 0.22
159 112 0.34
160 3 0.01
161 26 0.08
168 1 0.00
169 28 0.09
170 3 0.01
171 2 0.01
172 19 0.06
177 7 0.02
178 24 0.07
179 26 0.08
180 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.21
Consensus pattern (159 bp):
AAAGTGCCACGGAGTTGTGGACTTTAAAGATGAAAAAAGTACCACGGAGTTGTGGGCTTAAAAGG
GTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCAGAGAGTTGTGGGCTTTAAAAAGAGT
GCCACGGAGTTGTGGGCTTAAAGATGAAA
Found at i:683189 original size:63 final size:62
Alignment explanation
Indices: 682984--683260 Score: 325
Period size: 62 Copynumber: 4.5 Consensus size: 62
682974 CTTAAAGATG
*
682984 AAAAA-AGTGCCACGGAGTTGTGGGCTTTAAAGATGAAAAAAGTACCACAGAGTTGTGGGC-TT
1 AAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAGA-GAAAAAAGTGCCACAGAGTTGTGGGCTTT
* * *
683046 -AAAAGGGTGCCACAGAGTTGTGGGCTTAGAAG-GAAAAAGAGTGCCACAGAGTTATGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTA-AAGAGAAAAA-AGTGCCACAGAGTTGTGGGCTTT
* * *
683108 AAAAAGAGTG-CACGGAGTTATGGGCTTAAAGATGAAAAAAGTGTCACGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGA-GAAAAAAGTGCCACAGAGTTGTGGGCTTT
* * *
683170 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAA-AGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAGAGAAAAAAGTGCCACAGAGTTGTGGGCTTT
* *
683233 GAAAAAGA-TGCCACTGACTTGTGGGCTT
1 -AAAAAGAGTGCCACGGAGTTGTGGGCTT
683261 TTGAAGGGTA
Statistics
Matches: 188, Mismatches: 16, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
60 6 0.03
61 28 0.15
62 71 0.38
63 70 0.37
64 10 0.05
65 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.23
Consensus pattern (62 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAAGTGCCACAGAGTTGTGGGCTTT
Found at i:683214 original size:159 final size:154
Alignment explanation
Indices: 682681--683231 Score: 595
Period size: 159 Copynumber: 3.4 Consensus size: 154
682671 CTTAAAAGGG
* * *
682681 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAA
1 AAAAAGAGTACCACGGAGTTGTGGGC-TTAAAAG-----GGTGCCACGGAGTTGTGGGC-TT-AG
*
682746 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTG
58 AA-GGAAAAAGAGTGCCACAGAGTTGTGGGCTTT--------AAAAAGAGTGCCACGGAGTTGTG
* * *
682811 GGCTTTGAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAA
114 GGC-TT-AAAGA-TGAAAAA-AGTGCCACGGAGTTGTGGGCTT-TA
*
682856 GATGAAAAAAGTACCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGA
1 -A--AAAAGAGTACCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGA
* *
682921 AAAAGAGTGCCAGAAAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGATGAA
63 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGATGAA
682986 AAAAGTGCCACGGAGTTGTGGGCTTTAAA
128 AAAAGTGCCACGGAGTTGTGGGCTTT--A
* * *
683015 GATGAAAAAAGTACCACAGAGTTGTGGGCTTAAAAGGGTGCCACAGAGTTGTGGGCTTAGAAGGA
1 -A--AAAAGAGTACCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGA
* *
683080 AAAAGAGTGCCACAGAGTTATGGGCTTTAAAAAGAGTG-CACGGAGTTATGGGCTTAAAGATGAA
63 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGATGAA
*
683144 AAAAGTGTCACGGAGTTGTGGGCTTT-
128 AAAAGTGCCACGGAGTTGTGGGCTTTA
*
683170 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTT
1 AAAAAGAGTACCACGGAGTTGTGGGC-TT---AA-AAG--GGTGCCACGGAGTTGTGGGCTT
683232 TGAAAAAGAT
Statistics
Matches: 342, Mismatches: 21, Indels: 41
0.85 0.05 0.10
Matches are distributed among these distances:
152 22 0.06
153 2 0.01
154 1 0.00
156 2 0.01
157 3 0.01
158 71 0.21
159 129 0.38
160 3 0.01
161 26 0.08
169 28 0.08
170 3 0.01
171 2 0.01
172 19 0.06
176 1 0.00
177 7 0.02
178 23 0.07
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (154 bp):
AAAAAGAGTACCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGAAAA
AGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGATGAAAAA
AGTGCCACGGAGTTGTGGGCTTTA
Found at i:683261 original size:63 final size:62
Alignment explanation
Indices: 682887--683261 Score: 324
Period size: 63 Copynumber: 5.9 Consensus size: 62
682877 TTGTGGGCTT
* * *
682887 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCA-GAAAGTTGTGGGCTTT--
1 AAAAAGGTGCCACGGAGTTGTGGGCTT-----TAAAAAGAGTGCCACG-GAGTTGTGGGCTTTAA
682949 AA-
60 AAG
*
682951 AAAGA-GTGCCACGGAGTTGTGGGCTTAAAGATGAAAAA-AGTGCCACGGAGTTGTGGGCTTTAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTT-----T-AAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
683014 AGATG
60 A-A-G
* * * * * *
683019 AAAAAAGTACCACAGAGTTGTGGGC-TT-AAAAGGGTGCCACAGAGTTGTGGGC-TTAGAAGG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAG
* * *
683079 AAAAAGAGTGCCACAGAGTTATGGGCTTTAAAAAGAGTG-CACGGAGTTATGGGC-TTAAAGATG
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
* *
683142 AAAAAAGTGTCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
* * *
683205 AAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAAGA-TGCCACTGACTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAAGAGTGCCACGGAGTTGTGGGCTTT
683262 TGAAGGGTAA
Statistics
Matches: 262, Mismatches: 30, Indels: 39
0.79 0.09 0.12
Matches are distributed among these distances:
60 6 0.02
61 26 0.10
62 67 0.26
63 117 0.45
64 19 0.07
65 4 0.02
66 1 0.00
68 5 0.02
69 17 0.06
ACGTcount: A:0.32, C:0.12, G:0.33, T:0.22
Consensus pattern (62 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
Found at i:684734 original size:6 final size:6
Alignment explanation
Indices: 684709--684807 Score: 89
Period size: 6 Copynumber: 16.3 Consensus size: 6
684699 CGCTTTTTTG
* * *
684709 TTGTTG TTGTTG TTGTTT TT-TGTT TT-TTT TTGTTCT TTTTTT TTGTTTT
1 TTGTTT TTGTTT TTGTTT TTGT-TT TTGTTT TTGTT-T TTGTTT TTG-TTT
*
684758 TTGTTT TTGTTT TT-TTT TTGTTT TTGTTTT TTTTGTT TTGTTT TT-TTT
1 TTGTTT TTGTTT TTGTTT TTGTTT TTG-TTT TTGT-TT TTGTTT TTGTTT
684806 TT
1 TT
684808 TTTGTGGAGG
Statistics
Matches: 81, Mismatches: 5, Indels: 15
0.80 0.05 0.15
Matches are distributed among these distances:
5 15 0.19
6 45 0.56
7 21 0.26
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (6 bp):
TTGTTT
Found at i:684735 original size:1 final size:1
Alignment explanation
Indices: 684724--684810 Score: 84
Period size: 1 Copynumber: 87.0 Consensus size: 1
684714 GTTGTTGTTG
* * * * * * * *
684724 TTTTTTGTTTTTTTTTGTTCTTTTTTTTTGTTTTTTGTTTTTGTTTTTTTTTTGTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
684789 TTTGTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTT
684811 GTGGAGGACG
Statistics
Matches: 66, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 66 1.00
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (1 bp):
T
Found at i:684741 original size:23 final size:22
Alignment explanation
Indices: 684702--684812 Score: 109
Period size: 22 Copynumber: 4.9 Consensus size: 22
684692 ATCCGGACGC
* * *
684702 TTTTTTGTTGTTGTTGTTGTTG
1 TTTTTTGTTTTTTTTTTTGTTG
* *
684724 TTTTTTGTTTTTTTTTGTTCTTT
1 TTTTTTGTTTTTTTTT-TTGTTG
*
684747 TTTTTTGTTTTTTGTTTTTGTTTT
1 TTTTTTGTTTTTT-TTTTTG-TTG
684771 TTTTTTGTTTTTGTTTTTT-TTG
1 TTTTTTGTTTTT-TTTTTTGTTG
684793 TTTTGTT-TTTTTTTTTTTGT
1 TTTT-TTGTTTTTTTTTTTGT
684813 GGAGGACGCC
Statistics
Matches: 76, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
21 6 0.08
22 25 0.33
23 21 0.28
24 23 0.30
25 1 0.01
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (22 bp):
TTTTTTGTTTTTTTTTTTGTTG
Found at i:684750 original size:14 final size:13
Alignment explanation
Indices: 684731--684810 Score: 101
Period size: 13 Copynumber: 6.2 Consensus size: 13
684721 TTGTTTTTTG
*
684731 TTTTTTTTTGTTC
1 TTTTTTTTTGTTT
684744 TTTTTTTTTGTTT
1 TTTTTTTTTGTTT
*
684757 TTTGTTTTTGTTT
1 TTTTTTTTTGTTT
684770 TTTTTTTGTT-TTT
1 TTTTTTT-TTGTTT
*
684783 GTTTTTTTTGTTT
1 TTTTTTTTTGTTT
684796 TGTTTTTTTT-TTT
1 T-TTTTTTTTGTTT
684809 TT
1 TT
684811 GTGGAGGACG
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
12 3 0.05
13 46 0.78
14 10 0.17
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTGTTT
Found at i:684751 original size:17 final size:16
Alignment explanation
Indices: 684721--684808 Score: 97
Period size: 17 Copynumber: 5.1 Consensus size: 16
684711 GTTGTTGTTG
684721 TTGTTTTTTGTTTTTTT
1 TTGTTTTTT-TTTTTTT
684738 TTGTTCTTTTTTTTTGTTTT
1 TTG---TTTTTTTTT-TTTT
684758 TTGTTTTTGTTTTTTTT
1 TTGTTTTT-TTTTTTTT
*
684775 TTG-TTTTTGTTTTTT
1 TTGTTTTTTTTTTTTT
684790 TTGTTTTGTTTTTTTTT
1 TTGTTTT-TTTTTTTTT
684807 TT
1 TT
684809 TTGTGGAGGA
Statistics
Matches: 62, Mismatches: 2, Indels: 14
0.79 0.03 0.18
Matches are distributed among these distances:
15 10 0.16
16 7 0.11
17 25 0.40
18 4 0.06
19 3 0.05
20 13 0.21
ACGTcount: A:0.00, C:0.01, G:0.11, T:0.88
Consensus pattern (16 bp):
TTGTTTTTTTTTTTTT
Found at i:684802 original size:30 final size:30
Alignment explanation
Indices: 684703--684810 Score: 112
Period size: 30 Copynumber: 3.5 Consensus size: 30
684693 TCCGGACGCT
* *
684703 TTTTTGTTGTTGTTGTTGTTGTTTTTTGTTTTT
1 TTTTT-TT-TTGTTTTTGTT-TTTTTTGTTTTG
* *
684736 TTTTGTTCTTTTTTTTTGTTTTTTGT-TTTTG
1 TTTT-TT-TTTGTTTTTGTTTTTTTTGTTTTG
684767 TTTTTTTTTTGTTTTTGTTTTTTTTGTTTTG
1 -TTTTTTTTTGTTTTTGTTTTTTTTGTTTTG
684798 TTTTTTTTT-TTTT
1 TTTTTTTTTGTTTT
684811 GTGGAGGACG
Statistics
Matches: 65, Mismatches: 6, Indels: 12
0.78 0.07 0.14
Matches are distributed among these distances:
29 4 0.06
30 25 0.38
31 11 0.17
32 9 0.14
33 14 0.22
34 2 0.03
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (30 bp):
TTTTTTTTTGTTTTTGTTTTTTTTGTTTTG
Found at i:694478 original size:10 final size:10
Alignment explanation
Indices: 694463--694489 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
694453 ATGTATCAAG
694463 CAAAAACAAA
1 CAAAAACAAA
694473 CAAAAACAAA
1 CAAAAACAAA
694483 CAAAAAC
1 CAAAAAC
694490 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:698694 original size:52 final size:51
Alignment explanation
Indices: 698616--698764 Score: 199
Period size: 52 Copynumber: 2.9 Consensus size: 51
698606 CGAAATATGA
*
698616 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCCGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCCGGAC
* * *
698668 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGAC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCCGGAC
* * **
698720 AAACTTGCCTTCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
698765 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 81 0.95
53 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCCGGAC
Found at i:698859 original size:33 final size:33
Alignment explanation
Indices: 698822--698884 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
698812 GCTTAAATTG
698822 TATCGATACAAAAAAATATGTATCGATACATTA
1 TATCGATACAAAAAAATATGTATCGATACATTA
* ***
698855 TATCGATACAACATTTTATGTATCGATACA
1 TATCGATACAAAAAAATATGTATCGATACA
698885 AATCGTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (33 bp):
TATCGATACAAAAAAATATGTATCGATACATTA
Found at i:712941 original size:52 final size:52
Alignment explanation
Indices: 712689--712921 Score: 394
Period size: 52 Copynumber: 4.5 Consensus size: 52
712679 CGAAATATGA
*
712689 AAATTTGCCTGCATGTATCGATACATTTCATAGTATATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
712741 AAATTTGCCTGCATGTATCGATACATTTCATAGTATATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
712793 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
712845 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATTGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
712897 AAATTTGCCTGCATGTATGGATACA
1 AAATTTGCCTGCATGTATCGATACA
712922 AAGATCAGTG
Statistics
Matches: 174, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 174 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:712948 original size:13 final size:13
Alignment explanation
Indices: 712930--712954 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
712920 CAAAGATCAG
712930 TGTATCGATACAA
1 TGTATCGATACAA
712943 TGTATCGATACA
1 TGTATCGATACA
712955 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:713032 original size:32 final size:32
Alignment explanation
Indices: 712992--713091 Score: 173
Period size: 32 Copynumber: 3.1 Consensus size: 32
712982 GGCAGTAGCT
* * *
712992 TACATTGTATCGATCCAAAACTAATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
713024 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
713056 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
713088 TACA
1 TACA
713092 ACACTTTATG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 65 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:713034 original size:13 final size:13
Alignment explanation
Indices: 713016--713072 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
713006 CCAAAACTAA
713016 TGTATCGATACAT
1 TGTATCGATACAT
713029 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
713047 ATGTATCGATACAT
1 -TGTATCGATACAT
713061 TGTATCGATACA
1 TGTATCGATACA
713073 ACACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:713053 original size:19 final size:19
Alignment explanation
Indices: 713029--713112 Score: 117
Period size: 19 Copynumber: 4.7 Consensus size: 19
713019 ATCGATACAT
713029 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
713048 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
713061 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
713080 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
713100 TGTATCGATACAA
1 TGTATCGATACAA
713113 ATCGTTGAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 13
0.82 0.00 0.18
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
16 6 0.10
18 1 0.02
19 25 0.43
20 16 0.28
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:715515 original size:8 final size:8
Alignment explanation
Indices: 715482--715513 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
715472 ATAAAAAAAT
715482 ATTTATTA
1 ATTTATTA
715490 ATTTATTA
1 ATTTATTA
715498 ATTTATTA
1 ATTTATTA
*
715506 TTTTATTA
1 ATTTATTA
715514 TTATTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
ATTTATTA
Found at i:716382 original size:17 final size:17
Alignment explanation
Indices: 716357--716424 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
716347 CTTGCAAAGG
*
716357 TTTTCCTTTATTTTTCT
1 TTTTTCTTTATTTTTCT
*
716374 TTTTTCTTTCTTTTTCT
1 TTTTTCTTTATTTTTCT
*
716391 TTCTTT-TTTCTTCTTT-T
1 TT-TTTCTTTATT-TTTCT
716408 TTTTTCTCTCTATTTTT
1 TTTTTCT-T-TATTTTT
716425 TTCCTATCAG
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
16 3 0.07
17 27 0.63
18 10 0.23
19 3 0.07
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCTTTATTTTTCT
Found at i:716395 original size:14 final size:14
Alignment explanation
Indices: 716362--716427 Score: 50
Period size: 14 Copynumber: 4.8 Consensus size: 14
716352 AAAGGTTTTC
*
716362 CTTTATTTTTCTTT
1 CTTTCTTTTTCTTT
716376 -TTTCTTTCTT-TTT
1 CTTTCTTT-TTCTTT
716389 CTTTCTTTTT-TCTT
1 CTTTCTTTTTCT-TT
* *
716403 CTTTTTTTTTCTCT
1 CTTTCTTTTTCTTT
716417 CTATT-TTTTTC
1 CT-TTCTTTTTC
716428 CTATCAGCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
13 12 0.27
14 29 0.66
15 3 0.07
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (14 bp):
CTTTCTTTTTCTTT
Found at i:716411 original size:24 final size:24
Alignment explanation
Indices: 716373--716427 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
716363 TTTATTTTTC
*
716373 TTTTTTCTTTCTTTTTCTTTCT-T
1 TTTTTTCTTTCTTTTTCTCTCTAT
*
716396 TTTTCTTCTTTTTTTTTCTCTCTAT
1 TTTT-TTCTTTCTTTTTCTCTCTAT
716421 TTTTTTC
1 TTTTTTC
716428 CTATCAGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 4 0.14
24 19 0.68
25 5 0.18
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTTTCTTTCTTTTTCTCTCTAT
Found at i:716414 original size:10 final size:10
Alignment explanation
Indices: 716357--716414 Score: 71
Period size: 10 Copynumber: 5.7 Consensus size: 10
716347 CTTGCAAAGG
* *
716357 TTTTCCTTTA
1 TTTTTCTTTT
716367 TTTTTCTTTT
1 TTTTTCTTTT
716377 TTCTTTCTTTT
1 TT-TTTCTTTT
*
716388 TCTTTCTTTT
1 TTTTTCTTTT
*
716398 TTCTTCTTTT
1 TTTTTCTTTT
716408 TTTTTCT
1 TTTTTCT
716415 CTCTATTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
10 32 0.78
11 9 0.22
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:717303 original size:163 final size:166
Alignment explanation
Indices: 717094--717465 Score: 484
Period size: 163 Copynumber: 2.3 Consensus size: 166
717084 AAAAACTTTC
* * * * * *
717094 AAAACTGATTTATTATGAATTAAATGATGATACTTGATGAATTTTAAAAGTCAACAACCAAGAAA
1 AAAAATGATTTATTATGAATTAAATAATAATATTTAATGAATTTTAAAAGTCAAAAACCAAGAAA
* *
717159 AATCCCCCCGAAAATATTTATGAAGT-GAAAAACTCCGTATTTCGAAAACAAAAAAATTTC-A-A
66 AATCCCCCCGAAAATATTTAGGAAGTAG-AAAACTCCGTATTTCAAAAACAAAAAAATTTCAAGA
*
717221 AAAAAATGAAAAA-TGAATGAAAATGAATGAATTTTTG
130 AAAAAATGAAAAACT-AATGAAAATGAATGAATTTCTG
* * * * *
717258 AAAAA-GATTTAATATGAACTAAATAATAATATTTAATTAATTTTAAAAGTTAAAAACTAAGAAA
1 AAAAATGATTTATTATGAATTAAATAATAATATTTAATGAATTTTAAAAGTCAAAAACCAAGAAA
* * *
717322 AATCCTCCCGAAAATATTTAGGGAGTAGAAAACTCCGTATTTCAAAAACAGAAAAATTTCAAGAA
66 AATCCCCCCGAAAATATTTAGGAAGTAGAAAACTCCGTATTTCAAAAACAAAAAAATTTCAAGAA
* * *
717387 AAAAATGAAAAACTCATGAAGATGAGTGAATTTCTG
131 AAAAATGAAAAACTAATGAAAATGAATGAATTTCTG
* * *
717423 AAAAATAATTTATTATGAATTTAATAATAATATTTGATGAATT
1 AAAAATGATTTATTATGAATTAAATAATAATATTTAATGAATT
717466 ACAAAAATTT
Statistics
Matches: 177, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
163 102 0.58
164 6 0.03
165 37 0.21
166 32 0.18
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (166 bp):
AAAAATGATTTATTATGAATTAAATAATAATATTTAATGAATTTTAAAAGTCAAAAACCAAGAAA
AATCCCCCCGAAAATATTTAGGAAGTAGAAAACTCCGTATTTCAAAAACAAAAAAATTTCAAGAA
AAAAATGAAAAACTAATGAAAATGAATGAATTTCTG
Found at i:720395 original size:13 final size:13
Alignment explanation
Indices: 720377--720402 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
720367 TACAGCAAGT
720377 ATGTATCGATACA
1 ATGTATCGATACA
720390 ATGTATCGATACA
1 ATGTATCGATACA
720403 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:722648 original size:21 final size:21
Alignment explanation
Indices: 722615--722659 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
722605 TTGCAAGTTG
*
722615 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
722637 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
722657 AAA
1 AAA
722660 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:726524 original size:20 final size:20
Alignment explanation
Indices: 726498--726575 Score: 75
Period size: 20 Copynumber: 3.6 Consensus size: 20
726488 AATGTCCAAA
726498 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATGTTTCT
* *
726518 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACA--T-G--TTTCT
*
726543 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATGTTTCT
*
726563 TTGTATCGATACA
1 ATGTATCGATACA
726576 GGGTGATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 28 0.60
22 1 0.02
23 2 0.04
25 16 0.34
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATGTTTCT
Found at i:729120 original size:13 final size:13
Alignment explanation
Indices: 729102--729127 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
729092 TACAGCAAGT
729102 ATGTATCGATACA
1 ATGTATCGATACA
729115 ATGTATCGATACA
1 ATGTATCGATACA
729128 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:732016 original size:52 final size:51
Alignment explanation
Indices: 731938--732086 Score: 217
Period size: 52 Copynumber: 2.9 Consensus size: 51
731928 TGAAATATGA
731938 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* * * *
731990 AAATTTTCCTGCATGTATCGATACATTTTATAATGTATTGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
732042 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
732087 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 81 0.95
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:732093 original size:13 final size:13
Alignment explanation
Indices: 732075--732099 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
732065 CAAAGATCAG
732075 TGTATCGATACAA
1 TGTATCGATACAA
732088 TGTATCGATACA
1 TGTATCGATACA
732100 TTTTTTGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:732156 original size:33 final size:33
Alignment explanation
Indices: 732119--732185 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
732109 AGTAGCTTGA
732119 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
732152 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
732185 A
1 A
732186 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:732159 original size:13 final size:13
Alignment explanation
Indices: 732141--732165 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
732131 CAAAAAAATA
732141 TGTATCGATACAT
1 TGTATCGATACAT
732154 TGTATCGATACA
1 TGTATCGATACA
732166 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:733066 original size:55 final size:52
Alignment explanation
Indices: 732966--733250 Score: 251
Period size: 49 Copynumber: 5.7 Consensus size: 52
732956 GAAAAGTGAT
* * * * * * **
732966 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT-AG-A
* *
733020 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGA
* *
733073 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGA
* *
733116 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGA
* * * *
733166 -AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG---G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGA
* *
733213 CAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTG
733251 GGCTTAAAAG
Statistics
Matches: 200, Mismatches: 22, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
43 39 0.19
44 1 0.00
46 1 0.00
47 1 0.00
48 35 0.17
49 43 0.22
51 1 0.00
52 32 0.16
53 6 0.03
54 6 0.03
55 35 0.17
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGA
Found at i:733134 original size:43 final size:44
Alignment explanation
Indices: 733072--733261 Score: 256
Period size: 43 Copynumber: 4.1 Consensus size: 44
733062 TTAAAGATAG
733072 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
733116 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
733159 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
733208 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 -AA---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
733256 AAAAGG
1 AAAAGG
733262 AGACGCCACC
Statistics
Matches: 129, Mismatches: 7, Indels: 20
0.83 0.04 0.13
Matches are distributed among these distances:
43 41 0.32
44 6 0.05
45 1 0.01
46 1 0.01
47 2 0.02
48 37 0.29
49 36 0.28
50 2 0.02
51 1 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (44 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:733258 original size:97 final size:98
Alignment explanation
Indices: 732966--733258 Score: 355
Period size: 95 Copynumber: 2.9 Consensus size: 98
732956 GAAAAGTGAT
* * * * *
732966 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-G---AAGG-TGCCA
*
733031 ATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAG
58 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAG
* *
733072 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A--AAGGTGCCAATGTGCT
1 -AAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGAAGGTGCCAATGTGCT
733133 GATTCAAGGCCAGCTACATTGGACTTAAAGAT-G
65 GATTCAAGGCCAGCTACATTGGACTTAAAGATAG
*
733166 -AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGCAAGGTGCCAATATGCT
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG-AAGGTGCCAATGTGCT
* *
733230 GATTCAAGGCCAGCTATATTGGGCTTAAA
65 GATTCAAGGCCAGCTACATTGGACTTAAA
733259 AGGAGACGCC
Statistics
Matches: 168, Mismatches: 13, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
92 40 0.24
94 2 0.01
95 42 0.25
96 4 0.02
97 42 0.25
103 1 0.01
107 37 0.22
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (98 bp):
AAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGAAGGTGCCAATGTGCTG
ATTCAAGGCCAGCTACATTGGACTTAAAGATAG
Found at i:733386 original size:30 final size:29
Alignment explanation
Indices: 733278--733401 Score: 130
Period size: 28 Copynumber: 4.3 Consensus size: 29
733268 CACCAACTTG
* *
733278 TGTGGGCTTTTGAGAGGTTTG-CA-TCAACT
1 TGTGGGCTTTTGAAAGG-TTGCCACT-GACT
* *
733307 TGTGTGCTTTTG-AAGGTTGCTACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
733335 TGTGGGCTTTT-AAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* * *
733363 TATGGGCTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTGACT
733393 TGTGGGCTT
1 TGTGGGCTT
733402 AAAAAGAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
27 3 0.04
28 42 0.52
29 12 0.15
30 23 0.29
ACGTcount: A:0.18, C:0.15, G:0.30, T:0.37
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGTTGCCACTGACT
Found at i:733485 original size:29 final size:30
Alignment explanation
Indices: 733442--733618 Score: 121
Period size: 29 Copynumber: 6.0 Consensus size: 30
733432 GTTTACAAAA
* * *
733442 GAAAAGGAGTGCCACGGAGTTGTGGACTTTG
1 GAAAAGGA-TGCCACCGACTTGTGGGCTTTG
*
733473 GAAAA-GATGCCACCGACTTGTGGGCTTCG
1 GAAAAGGATGCCACCGACTTGTGGGCTTTG
* * * *
733502 AAAAAGGGTGCCACTGATTTGTGGGCTTT-
1 GAAAAGGATGCCACCGACTTGTGGGCTTTG
* *
733531 G--AAGGTTGCCACTGACTTGTGGGCTTTTG
1 GAAAAGGATGCCACCGACTTGTGGGC-TTTG
* ** * *
733560 AAAAAAAAATGCCACTGACTTGTGGGC-TTC
1 -GAAAAGGATGCCACCGACTTGTGGGCTTTG
** * *
733590 GAAAAATATGCCACTGACTTGTGGACTTT
1 GAAAAGGATGCCACCGACTTGTGGGCTTT
733619 TGAAGGGTGA
Statistics
Matches: 119, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
27 21 0.18
28 3 0.03
29 45 0.38
30 25 0.21
31 5 0.04
32 20 0.17
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (30 bp):
GAAAAGGATGCCACCGACTTGTGGGCTTTG
Found at i:733543 original size:27 final size:27
Alignment explanation
Indices: 733480--733557 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
733470 TTGGAAAAGA
* *
733480 TGCCACCGACTTGTGGGCTTCGAAAAAGGG
1 TGCCACTGACTTGTGGGCTTTG---AAGGG
* *
733510 TGCCACTGATTTGTGGGCTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTGAAGGG
733537 TGCCACTGACTTGTGGGCTTT
1 TGCCACTGACTTGTGGGCTTT
733558 TGAAAAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 24 0.56
30 19 0.44
ACGTcount: A:0.17, C:0.21, G:0.32, T:0.31
Consensus pattern (27 bp):
TGCCACTGACTTGTGGGCTTTGAAGGG
Found at i:733565 original size:59 final size:60
Alignment explanation
Indices: 733443--733622 Score: 186
Period size: 59 Copynumber: 3.0 Consensus size: 60
733433 TTTACAAAAG
* * * * * *
733443 AAAAGGAGTGCCACGGAGTTGTGGACTTTGGAAAAGATGCCACCGACTTGTGGGC-TTCG-A
1 AAAAGG-GTGCCACTGACTTGTGGGCTTT-GAAAAGTTGCCACTGACTTGTGGGCTTTTGAA
* *
733503 AAAAGGGTGCCACTGATTTGTGGGCTTTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAA
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTGACTTGTGGGCTTTTGAA
*** * * *
733562 AAAAAAATGCCACTGACTTGTGGGCTTCGAAAAATATGCCACTGACTTGTGGACTTTTGAA
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGT-TGCCACTGACTTGTGGGCTTTTGAA
733623 GGGTGAGGAA
Statistics
Matches: 101, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
57 20 0.20
58 4 0.04
59 44 0.44
60 9 0.09
61 24 0.24
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (60 bp):
AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTGACTTGTGGGCTTTTGAA
Found at i:733574 original size:32 final size:32
Alignment explanation
Indices: 733537--733622 Score: 124
Period size: 29 Copynumber: 2.8 Consensus size: 32
733527 CTTTGAAGGT
733537 TGCCACTGACTTGTGGGCTTTTGAAAAAAAAA
1 TGCCACTGACTTGTGGGCTTTTGAAAAAAAAA
* *
733569 TGCCACTGACTTGTGGGC-TTCG--AAAAATA
1 TGCCACTGACTTGTGGGCTTTTGAAAAAAAAA
*
733598 TGCCACTGACTTGTGGACTTTTGAA
1 TGCCACTGACTTGTGGGCTTTTGAA
733623 GGGTGAGGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 23 0.49
30 3 0.06
31 3 0.06
32 18 0.38
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (32 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAAAAAA
Found at i:735004 original size:1 final size:1
Alignment explanation
Indices: 734998--735046 Score: 53
Period size: 1 Copynumber: 49.0 Consensus size: 1
734988 TCCGGACCCC
* * * * *
734998 TTTTTTTTGTTTTTGTTTTTTTGTTTTTTTTTGTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
735047 GTGGAGGACG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (1 bp):
T
Found at i:735018 original size:15 final size:14
Alignment explanation
Indices: 734998--735046 Score: 80
Period size: 14 Copynumber: 3.4 Consensus size: 14
734988 TCCGGACCCC
734998 TTTTTTTTGTTTTT
1 TTTTTTTTGTTTTT
*
735012 GTTTTTTTGTTTTT
1 TTTTTTTTGTTTTT
735026 TTTTGTTTTGTTTTT
1 TTTT-TTTTGTTTTT
735041 TTTTTT
1 TTTTTT
735047 GTGGAGGACG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 18 0.56
15 14 0.44
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (14 bp):
TTTTTTTTGTTTTT
Found at i:735030 original size:24 final size:22
Alignment explanation
Indices: 734998--735046 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 22
734988 TCCGGACCCC
734998 TTTTTTTTGTTTTTGTTTTTTTGT
1 TTTTTTTTG-TTTTGTTTTTTT-T
735022 TTTTTTTTGTTTTGTTTTTTTT
1 TTTTTTTTGTTTTGTTTTTTTT
735044 TTT
1 TTT
735047 GTGGAGGACG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 4 0.16
23 12 0.48
24 9 0.36
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (22 bp):
TTTTTTTTGTTTTGTTTTTTTT
Found at i:749003 original size:51 final size:52
Alignment explanation
Indices: 748883--749010 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
748873 CGAAATATGA
*
748883 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
* * **
748935 AAATTTTCCTGCATGTATCGATATATTTTATAATGTATCGATA-ATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
748986 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
749011 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
51 31 0.45
52 38 0.55
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
Found at i:749023 original size:51 final size:51
Alignment explanation
Indices: 748883--749030 Score: 208
Period size: 51 Copynumber: 2.9 Consensus size: 51
748873 CGAAATATGA
748883 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* * * *
748935 AAATTTTCCTGCATGTATCGATATATTTTATAATGTATCGATA-ATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
748986 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
749031 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
50 2 0.02
51 42 0.51
52 37 0.45
53 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:749037 original size:13 final size:13
Alignment explanation
Indices: 749019--749043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
749009 CAAAGATCAG
749019 TGTATCGATACAA
1 TGTATCGATACAA
749032 TGTATCGATACA
1 TGTATCGATACA
749044 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:750029 original size:55 final size:52
Alignment explanation
Indices: 749937--750213 Score: 235
Period size: 49 Copynumber: 5.6 Consensus size: 52
749927 ATAAAGATGG
* * * * * ** *
749937 CAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGT
1 CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT-AG-AAAAGG-TGC
*
749992 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGAAAAGGTGC
* *
750044 CAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---AAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGAAAAGGTGC
* * *
750087 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGAAAAGGTGC
* * * * *
750136 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG---G-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGAAAAGGTGC
*
750184 CAATATGCTGATTCAAGGCCAGCTATATTG
1 CAATATGCTGATTCAAGGCCAGCTACATTG
750214 GGCTTAAAAG
Statistics
Matches: 192, Mismatches: 22, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
43 39 0.20
44 1 0.01
46 1 0.01
47 1 0.01
48 34 0.18
49 42 0.22
51 1 0.01
52 32 0.17
53 6 0.03
54 2 0.01
55 33 0.17
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (52 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAGAAAAGGTGC
Found at i:750097 original size:43 final size:44
Alignment explanation
Indices: 750035--750224 Score: 247
Period size: 43 Copynumber: 4.1 Consensus size: 44
750025 TTAAAGATAG
750035 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
750079 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
750122 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT
1 AAA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
750171 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 -AA---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
750219 AAAAGG
1 AAAAGG
750225 AGACGCCACC
Statistics
Matches: 127, Mismatches: 9, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
43 41 0.32
44 6 0.05
45 1 0.01
46 1 0.01
47 2 0.02
48 36 0.28
49 35 0.28
50 2 0.02
51 1 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (44 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:750220 original size:97 final size:98
Alignment explanation
Indices: 749929--750221 Score: 346
Period size: 95 Copynumber: 2.9 Consensus size: 98
749919 GAAAAGTGAT
* * * * *
749929 AAAGATGGCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCA
1 AAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT-AA-A-G-G---AAGG-TGCCA
*
749994 ATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATAG
58 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAG
* * *
750035 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A--AAGGTGCCAATGTGCT
1 -AAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGAAGGTGCCAATGTGCT
750096 GATTCAAGGCCAGCTACATTGGACTTAAAGAT-G
65 GATTCAAGGCCAGCTACATTGGACTTAAAGATAG
*
750129 -AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGCAAGGTGCCAATATGCT
1 AAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGG-AAGGTGCCAATGTGCT
* *
750193 GATTCAAGGCCAGCTATATTGGGCTTAAA
65 GATTCAAGGCCAGCTACATTGGACTTAAA
750222 AGGAGACGCC
Statistics
Matches: 166, Mismatches: 15, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
92 39 0.23
94 2 0.01
95 42 0.25
96 4 0.02
97 42 0.25
103 1 0.01
107 36 0.22
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (98 bp):
AAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGAAGGTGCCAATGTGCTG
ATTCAAGGCCAGCTACATTGGACTTAAAGATAG
Found at i:750298 original size:28 final size:28
Alignment explanation
Indices: 750241--750364 Score: 126
Period size: 28 Copynumber: 4.3 Consensus size: 28
750231 CACCAACTTG
*
750241 TGTGGGCTTTTGAGAGGTTTG-CA-TCAACT
1 TGTGGGCTTTTGA-AGG-TTGCCACT-GACT
* *
750270 TGTGTGCTTTTGAAGGTTGCTACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
*
750298 TGTGGGCTTTTAAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
750326 TGTGGGATTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
750356 TGTGGGCTT
1 TGTGGGCTT
750365 AAAAAGAAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
27 3 0.04
28 42 0.52
29 13 0.16
30 22 0.28
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.37
Consensus pattern (28 bp):
TGTGGGCTTTTGAAGGTTGCCACTGACT
Found at i:750448 original size:29 final size:29
Alignment explanation
Indices: 750405--750581 Score: 169
Period size: 29 Copynumber: 6.0 Consensus size: 29
750395 GTTTACAAAA
* * * *
750405 GAAAAGGAGTGCCACGGAGTTGTGGACTTT
1 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
* * *
750435 GGAAAAGATGCCACCGACTTGTGGGCTTC
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
750464 GAAAAAGGGTGCCACTGATTTGTGGGCTTT
1 GAAAAA-GATGCCACTGACTTGTGGGCTTT
* *
750494 G--AAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAAGATGCCACTGACTTGTGGGC-TTT
*
750522 GAAAAAAAAATGCCACTGACTTGTGGGCTTT
1 G--AAAAAGATGCCACTGACTTGTGGGCTTT
* *
750553 GAAAAATATGCCACTGACTTGTGGACTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
750582 TGAAGGGTGA
Statistics
Matches: 122, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
27 18 0.15
28 6 0.05
29 48 0.39
30 26 0.21
31 4 0.03
32 20 0.16
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTT
Found at i:750528 original size:59 final size:60
Alignment explanation
Indices: 750406--750585 Score: 195
Period size: 59 Copynumber: 3.0 Consensus size: 60
750396 TTTACAAAAG
* * * * * *
750406 AAAAGGAGTGCCACGGAGTTGTGGACTTTGGAAAAGATGCCACCGACTTGTGGGC-TTCG-A
1 AAAAGG-GTGCCACTGACTTGTGGGCTTT-GAAAAGTTGCCACTGACTTGTGGGCTTTTGAA
* *
750466 AAAAGGGTGCCACTGATTTGTGGGCTTTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAA
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTGACTTGTGGGCTTTTGAA
*** * *
750525 AAAAAAATGCCACTGACTTGTGGGCTTTGAAAAATATGCCACTGACTTGTGGACTTTTGAA
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGT-TGCCACTGACTTGTGGGCTTTTGAA
750586 GGGTGAGGAA
Statistics
Matches: 102, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
57 20 0.20
58 4 0.04
59 45 0.44
60 9 0.09
61 24 0.24
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (60 bp):
AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTGACTTGTGGGCTTTTGAA
Found at i:754543 original size:20 final size:20
Alignment explanation
Indices: 754518--754556 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
754508 AAAATCCAAC
754518 TATTTTTCATTT-TTTTCTTG
1 TATTTTTC-TTTCTTTTCTTG
754538 TATTTTTCTTTCTTTTCTT
1 TATTTTTCTTTCTTTTCTT
754557 TCTTTTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.08, C:0.13, G:0.03, T:0.77
Consensus pattern (20 bp):
TATTTTTCTTTCTTTTCTTG
Found at i:755123 original size:155 final size:161
Alignment explanation
Indices: 754951--755466 Score: 463
Period size: 166 Copynumber: 3.2 Consensus size: 161
754941 GTTTAATGAC
* * *
754951 AATA-TTATATGAATTTTAAAAATTTTAAATCAAGAAAAATCCCCTCTAAAATATTTACGGAGTA
1 AATATTTA-ATGAATTTTAAAAATTTAAAAACAAGAAAAATCCCC-CAAAAATATTTACGGAGTA
*
755015 GAAAACTCAGT-TTTCAAAAATAAGG-AGATTTCGAAG-AAAAA-ATG-AAA-AATG-AATGAAT
64 GAAAACTCAGTATTTCAAAAA-AAGGAAAATTTC-AAGAAAAAATATGAAAAGAATGAAATGAAT
755073 -TTTTGAAAAA-TAATTTAATATGAAATAAATAAT
127 ATTTTGAAAAACTAATTTAATATGAAATAAATAAT
*
755106 AATATTTAATGAATTTTAAAAA-TTAAAAACCAAGAAAAATCCCCCCAAAAA-ATTTACGAAGT-
1 AATATTTAATGAATTTTAAAAATTTAAAAA-CAAGAAAAAT-CCCCCAAAAATATTTACGGAGTA
* *
755168 GAAAAACTCCGTATTTCAAAAACAGGAAAATTTCAAGAAAAAATATGAAAAATGAATGAAAATGA
64 G-AAAACTCAGTATTTCAAAAAAAGGAAAATTTCAAGAAAAAATATG-AAAA-GAATG-AAATGA
* * *
755233 ATGAATTTTTAAAAACTGATTTAATATGAATTAAATAAT
125 AT--ATTTTGAAAAACTAATTTAATATGAAATAAATAAT
* *
755272 AATATTTAATGAATTTTAAAAA-TTAAAAACTAAAAAAAATGCCCCCAAAAATATTTACTGAGTA
1 AATATTTAATGAATTTTAAAAATTTAAAAAC-AAGAAAAAT-CCCCCAAAAATATTTACGGAGTA
* * * * * * ** *
755336 GAAAACTCTA-TATTTTAGAAATA-GAGAATTTTAGGGAAAAAAATCAAAAAAAAACTCATGAAG
64 GAAAACTC-AGTATTTCAAAAAAAGGAAAATTTCA-AG-AAAAAAT-ATGAAAAGA---ATGAA-
* * *
755399 ATGAGTGAATTTTTG-AAAACTAATTTAATATGAATTAAATATT
121 ATGAAT--A-TTTTGAAAAACTAATTTAATATGAAATAAATAAT
*
755442 AATATTTGATGAATTTTAAAAATTT
1 AATATTTAATGAATTTTAAAAATTT
755467 TAAACCTATG
Statistics
Matches: 301, Mismatches: 29, Indels: 46
0.80 0.08 0.12
Matches are distributed among these distances:
153 1 0.00
154 30 0.10
155 53 0.18
156 10 0.03
158 3 0.01
160 4 0.01
162 7 0.02
165 10 0.03
166 76 0.25
167 28 0.09
168 12 0.04
169 3 0.01
170 58 0.19
171 6 0.02
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (161 bp):
AATATTTAATGAATTTTAAAAATTTAAAAACAAGAAAAATCCCCCAAAAATATTTACGGAGTAGA
AAACTCAGTATTTCAAAAAAAGGAAAATTTCAAGAAAAAATATGAAAAGAATGAAATGAATATTT
TGAAAAACTAATTTAATATGAAATAAATAAT
Found at i:755461 original size:170 final size:166
Alignment explanation
Indices: 755055--755497 Score: 516
Period size: 166 Copynumber: 2.6 Consensus size: 166
755045 TCGAAGAAAA
* *
755055 AATGAAAAATGAATGAATTTTTGAAAAATAATTTAATATGAAATAAATAATAATATTTAATGAAT
1 AATG-AAAATGAATGAATTTTTGAAAACTAATTTAATATGAATTAAATAATAATATTTAATGAAT
* *
755120 TTTAAAAATTAAAAACCAAGAAAAATCCCCCCAAAAAATTTACGAAGTGAAAAACTCCGTATTTC
65 TTTAAAAATTAAAAACCAAAAAAAATCCCCCCAAAAAATTTACGAAGTGAAAAACTCCATATTTC
**
755185 AAAAACAGGAAAATTTCAAGAAAAAATATGAAAAATG
130 AAAAACAGGAAAATTTCAAGAAAAAATAAAAAAAATG
* *
755222 AATGAAAATGAATGAATTTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTAATGAATT
1 AATGAAAATGAATGAATTTTTGAAAACTAATTTAATATGAATTAAATAATAATATTTAATGAATT
* * *
755287 TTAAAAATTAAAAACTAAAAAAAATGCCCCCAAAAATATTTACTG-AGT-AGAAAACTCTATATT
66 TTAAAAATTAAAAACCAAAAAAAATCCCCCCAAAAA-ATTTAC-GAAGTGA-AAAACTCCATATT
* * * * * *
755350 TTAGAAATA-GAGAATTTTAGGGAAAAAAATCAAAAAAAAACT-
128 TCAAAAACAGGAAAATTTCA-AG-AAAAAAT--AAAAAAAA-TG
* * * * *
755392 CATGAAGATGAGTGAATTTTTGAAAACTAATTTAATATGAATTAAATATTAATATTTGATGAATT
1 AATGAAAATGAATGAATTTTTGAAAACTAATTTAATATGAATTAAATAATAATATTTAATGAATT
** * ** * *
755457 TTAAAAATTTTAAACCTATGAAAATCCTCCCGAAAAATTTA
66 TTAAAAATTAAAAACCAAAAAAAATCCCCCCAAAAAATTTA
755498 TAAAGTAGGA
Statistics
Matches: 235, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
166 99 0.42
167 31 0.13
168 8 0.03
169 5 0.02
170 91 0.39
171 1 0.00
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (166 bp):
AATGAAAATGAATGAATTTTTGAAAACTAATTTAATATGAATTAAATAATAATATTTAATGAATT
TTAAAAATTAAAAACCAAAAAAAATCCCCCCAAAAAATTTACGAAGTGAAAAACTCCATATTTCA
AAAACAGGAAAATTTCAAGAAAAAATAAAAAAAATG
Found at i:760282 original size:15 final size:15
Alignment explanation
Indices: 760253--760281 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
760243 ATTTTTAAAA
760253 ATTTTATTTAATTTT
1 ATTTTATTTAATTTT
760268 ATTTTA-TTAATTTT
1 ATTTTATTTAATTTT
760282 TCCAACTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
ATTTTATTTAATTTT
Found at i:761501 original size:13 final size:13
Alignment explanation
Indices: 761483--761508 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
761473 TACAGCAAGT
761483 ATGTATCGATACA
1 ATGTATCGATACA
761496 ATGTATCGATACA
1 ATGTATCGATACA
761509 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:763762 original size:21 final size:21
Alignment explanation
Indices: 763729--763773 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
763719 TTGCAAGTTG
*
763729 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
763751 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
763771 AAA
1 AAA
763774 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:765597 original size:15 final size:15
Alignment explanation
Indices: 765577--765607 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
765567 TAAAAATGTC
*
765577 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
765592 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
765607 C
1 C
765608 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:767710 original size:13 final size:13
Alignment explanation
Indices: 767692--767727 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
767682 ACATTTTTCT
*
767692 TTGTATTGATACA
1 TTGTATCGATACA
767705 TTGTATCGATACA
1 TTGTATCGATACA
767718 TTGTATCGAT
1 TTGTATCGAT
767728 GCAGGGTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:770292 original size:13 final size:13
Alignment explanation
Indices: 770274--770299 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
770264 TACAGCAAGT
770274 ATGTATCGATACA
1 ATGTATCGATACA
770287 ATGTATCGATACA
1 ATGTATCGATACA
770300 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:773739 original size:20 final size:20
Alignment explanation
Indices: 773714--773754 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
773704 GTTTGGAAAG
773714 GATTTGGAAAGATATGGTCA
1 GATTTGGAAAGATATGGTCA
*
773734 GATTTGGAAGGATATGGTCA
1 GATTTGGAAAGATATGGTCA
773754 G
1 G
773755 TGTTGTGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.34, T:0.29
Consensus pattern (20 bp):
GATTTGGAAAGATATGGTCA
Found at i:774113 original size:101 final size:101
Alignment explanation
Indices: 773980--774714 Score: 322
Period size: 87 Copynumber: 7.8 Consensus size: 101
773970 TTGAAGACAA
** * * * ** *
773980 ATGCCAATGTGCTGAGGCAAGGCCAGCAACATTGGGCTT-AGGAATGTTAAAGATGCTAATACGC
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG-ATGACAAAGATGCCAATACGC
** *
774044 TGATTCAAGGCCAACGATATTGGACTTAAGGATGAAG
65 TGATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
* * * * * *
774081 GTGCCAATGTACTGATTCAAGGCCAACGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
*
774146 GATTCAAGGCCAGCGATACCGGACTTAAAGATGAAG
66 GATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
* * * *
774182 ATGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGCCAATATGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
** * ** ** **
774243 GATTCAAGGCCAGGGACATTGGTTTTAAAGACAAAG
66 GATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
*** * * * **
774279 GCACCAATATGTTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-----G-TGCCAATGTGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
* * ** * *
774335 GATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAG
66 GATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
* * * * * *
774370 GTGCCAATATGCTGATTTAAGGCCAGCGATATTGGGCTT----ATG-C-CA-ATG----T--GCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
* * * * *
774422 GATTCAAGGCCAGCGACACTGGTCTTAAAGA-CAAG
66 GATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
* * * * * *
774457 GTGCCAATATGCTGATTTAAGGCCAGCGATATTGGGCTT----ATG-C-CA-ATG----T--GCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
* ** * *
774509 GATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAG
66 GATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
* * * * *** *
774544 GTGCCAATATGTTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAAGGCACCAATATGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
* **
774606 GATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G
66 GATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
* * **
774637 -TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGCCAATATACT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
*
774697 GATTCAAGGCCAGCGATA
66 GATTCAAGGCCAACGATA
774715 TTGGGCTTAT
Statistics
Matches: 551, Mismatches: 66, Indels: 44
0.83 0.10 0.07
Matches are distributed among these distances:
87 157 0.28
88 1 0.00
89 4 0.01
90 2 0.00
91 68 0.12
92 82 0.15
93 4 0.01
95 2 0.00
96 2 0.00
97 107 0.19
98 3 0.01
99 1 0.00
100 2 0.00
101 114 0.21
102 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (101 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGATGCCAATACGCT
GATTCAAGGCCAACGATACCGGACTTAAAGATGAAG
Found at i:774254 original size:48 final size:48
Alignment explanation
Indices: 773936--775152 Score: 982
Period size: 48 Copynumber: 25.8 Consensus size: 48
773926 TGAAGAATGA
* * * * *
773936 CAATGTGCTGATTCATGGCCAGCGACATTTAGAT-TTGAAGACAA-ATGC
1 CAATATGCTGATTCAAGGCCAGCGACA-TT-GGTCTTAAAGACAAGGTGC
* ** * * *
773984 CAATGTGCTGAGGCAAGGCCAGCAACATTGGGCTTAGGAATGTTA-AAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTA--AA-G--ACAAGGTGC
* * * * * * *
774036 TAATACGCTGATTCAAGGCCAACGATATTGGACTTAAGGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGC
* * * *
774085 CAATGTACTGATTCAAGGCCAACGACATTGGACTTAAAGATGACGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGC
* ** * * *
774137 CAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGC
774186 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * **
774234 CAATATGCTGATTCAAGGCCAGGGACATTGGTTTTAAAGACAAAGGCAC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAC-AAGGTGC
* * *
774283 CAATATGTTGATTCAAGGCCAGCGATATTGGACTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
*
774326 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * *
774374 CAATATGCTGATTTAAGGCCAGCGATATTGGGCTT-------A--TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* *
774413 CAATGTGCTGATTCAAGGCCAGCGACACTGGTCTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * *
774461 CAATATGCTGATTTAAGGCCAGCGATATTGGGCTT-------A--TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* *
774500 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* **
774548 CAATATGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCAC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAC-AAGGTGC
* *
774597 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
*
774640 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * *
774688 CAATATACTGATTCAAGGCCAGCGATATTGGGCTT-------A--TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * * *
774727 CAATGTGCTGATTCAAGGCCAGCAATATTGGACTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* *
774770 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTCAAGATGACAAAG-GC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAGGTGC
* * **
774820 ACTAATATGCTGATTCAAGGCCAGCGATATTAGG-CTTAGGCCAATGTGCTAATTCTAGGC
1 -C-AATATGCTGATTCAAGGCCAGCGACATT-GGTCTTA----AA-G-AC-AA-GGT--GC
* * *
774880 CAATATGCTAATTCAAGGCCAACGACATTGGTCTTAAAGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * *
774928 CAATATGCTGATTCAAGGCCAGCAATATTGGACTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * **
774971 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGATAAAGGCAC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GA-CAAGGTGC
* * *
775023 CAATATACTGATTCAAGGCCAGCGATATTGGGCTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
*
775066 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
* * *
775114 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAG
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
775153 GAAGACGCCA
Statistics
Matches: 950, Mismatches: 135, Indels: 168
0.76 0.11 0.13
Matches are distributed among these distances:
39 100 0.11
41 4 0.00
43 182 0.19
44 1 0.00
45 3 0.00
46 3 0.00
47 8 0.01
48 292 0.31
49 155 0.16
50 10 0.01
51 11 0.01
52 135 0.14
53 3 0.00
54 5 0.01
55 2 0.00
56 2 0.00
57 2 0.00
58 29 0.03
59 1 0.00
60 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (48 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
Found at i:774439 original size:87 final size:88
Alignment explanation
Indices: 774231--774881 Score: 618
Period size: 87 Copynumber: 7.3 Consensus size: 88
774221 AAAGACAAGG
* * * ** *
774231 TGCCAATATGCTGATTCAAGGCCAGGGACATTGGTTTTAAAGACAAAGGCACCAATATGTTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAC-AAGGTGCCAATATGCTGATT
*
774296 CAAGGCCAGCGATATTGGACTTAAA
65 CAAGGCCAGCGATATTGGGCTT-AA
774321 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
1 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
*
774386 TTAAGGCCAGCGATATTGGGCTT-A
64 TCAAGGCCAGCGATATTGGGCTTAA
* *
774410 TGCCAATGTGCTGATTCAAGGCCAGCGACACTGGTCTTAAAGACAAGGTGCCAATATGCTGATTT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
774475 AAGGCCAGCGATATTGGGCTT-A
66 AAGGCCAGCGATATTGGGCTTAA
* *
774497 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
* *
774562 AAGGCCAGCGACATTGGTCTTAAAGACAAA
66 AAGGCCAGCGATATTGGGCTT-------AA
* * * * *
774592 GGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAGGTGCCAATGTGCTGAT
1 TG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
* *
774652 TCAAGGCCAGCGACATTGGTCTTAAAGACAA
64 TCAAGGCCAGCGATATTGGGCTT------AA
* * * * *
774683 GGTGCCAATATACTGATTCAAGGCCAGCGATATTGGGCTT-------A--TGCCAATGTGCTGAT
1 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
* *
774739 TCAAGGCCAGCAATATTGGACTTAAA
64 TCAAGGCCAGCGATATTGGGCTT-AA
*
774765 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTCAAGATGACAAAG-GCACTAATATG
1 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAGGTGC-C-AATATG
*
774829 CTGATTCAAGGCCAGCGATATTAGGCTT-A
59 CTGATTCAAGGCCAGCGATATTGGGCTTAA
* * *
774858 GGCCAATGTGCTAATTCTAGGCCA
1 TGCCAATGTGCTGATTCAAGGCCA
774882 ATATGCTAAT
Statistics
Matches: 489, Mismatches: 44, Indels: 53
0.83 0.08 0.09
Matches are distributed among these distances:
82 38 0.08
87 201 0.41
89 2 0.00
91 96 0.20
92 82 0.17
93 5 0.01
94 1 0.00
95 32 0.07
97 32 0.07
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (88 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGGCTTAA
Found at i:774765 original size:314 final size:315
Alignment explanation
Indices: 774082--775150 Score: 1371
Period size: 314 Copynumber: 3.3 Consensus size: 315
774072 AGGATGAAGG
* *
774082 TGCCAATGTACTGATTCAAGGCCAACGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-GAC-AAGGTGCCAATATGCTG
**
774147 ATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGAC
62 ATTCAAGGCCAGCGATATTGGAC-T-----T--A-ATGCCAATATGCTGATTCAAGGCCAGCGAC
* *
774212 ATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGGGACATTGGTTTTAAAGACAA
118 ATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAA
*
774277 AGGCACCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
183 AGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
* *
774342 GGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGGC
248 GGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGGC
774407 TTA
313 TTA
* * *
774410 TGCCAATGTGCTGATTCAAGGCCAGCGACACTGGTCTTAAAGACAAGGTGCCAATATGCTGATTT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTC
* * *
774475 AAGGCCAGCGATATTGGGCTT-ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAG
66 AAGGCCAGCGATATTGGACTTAATGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
*
774539 ACAAGGTGCCAATATGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCACCAATATG
131 ACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCACCAATATG
774604 CTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
196 CTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
774669 GGTCTTAAAGACAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGGCTTA
261 GGTCTTAAAGACAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGGCTTA
* * *
774724 TGCCAATGTGCTGATTCAAGGCCAGCAATATTGGACTT----A-AAGGTGCCAATGTGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTC
* * *
774784 AAGGCCAGCGACATTGGTCTTCAAGATGACAAAGGCACTAATATGCTGATTCAAGGCCAGCGATA
66 AAGGCCAGCGATATTGGACTT--A-AT-------GC-C-AATATGCTGATTCAAGGCCAGCGACA
* ** * *
774849 TTAGG-CTTAGGCCAATGTGCTAATTCTAGGCCAATATGCTAATTCAAGGCCAACGACATTGGTC
119 TT-GGTCTTA----AA-G-AC-AA-GGT--GCCAATATGCTGATTCAAGGCCAGCGACATTGGTC
** *
774913 TTAAAGA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGGTGCCAATGT
173 TTAAAGACAAAGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
* **
774977 GCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGATAAAGGCACCAATATACTGATTCAAGGC
238 GCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GA-CAAGGTGCCAATATACTGATTCAAGGC
775042 CAGCGATATTGGGCTTAAA
299 CAGCGATATTGGGCTT--A
*
775061 GGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
1 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGAT
*
775126 TCAAGGCCAGCGATATTAGACTTAA
64 TCAAGGCCAGCGATATTGGACTTAA
775151 AGGAAGACGC
Statistics
Matches: 658, Mismatches: 46, Indels: 61
0.86 0.06 0.08
Matches are distributed among these distances:
309 38 0.06
310 1 0.00
313 2 0.00
314 254 0.39
318 1 0.00
320 2 0.00
321 1 0.00
322 29 0.04
323 3 0.00
324 36 0.05
325 3 0.00
326 3 0.00
327 3 0.00
328 35 0.05
329 2 0.00
330 1 0.00
331 83 0.13
332 41 0.06
333 1 0.00
334 2 0.00
335 40 0.06
337 1 0.00
339 35 0.05
341 1 0.00
342 1 0.00
343 1 0.00
344 38 0.06
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (315 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAATGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
ACAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCACCAATATG
CTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
GGTCTTAAAGACAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGGCTTA
Found at i:774880 original size:19 final size:19
Alignment explanation
Indices: 774856--774901 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
774846 ATATTAGGCT
*
774856 TAGGCCAATGTGCTAATTC
1 TAGGCCAATATGCTAATTC
774875 TAGGCCAATATGCTAATTC
1 TAGGCCAATATGCTAATTC
*
774894 AAGGCCAA
1 TAGGCCAA
774902 CGACATTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (19 bp):
TAGGCCAATATGCTAATTC
Found at i:774973 original size:110 final size:110
Alignment explanation
Indices: 774768--774991 Score: 287
Period size: 110 Copynumber: 2.0 Consensus size: 110
774758 ACTTAAAGGT
* * * *
774768 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTCAAGATGACAAAGGCACTAATATGCTGA
1 GCCAATATGCTAATTCAAGGCCAACGACATTGGTCTTCAAGATGACAAAGGCACCAATATGCTGA
* *
774833 TTCAAGGCCAGCGATATTAGGCTTAGGCCAATGTGCTAATTCTAG
66 TTCAAGGCCAGCAATATTAGGCTTAGGCCAATGTGCTAATTCAAG
**
774878 GCCAATATGCTAATTCAAGGCCAACGACATTGGTCTT-AA-A-GA-AAAGGTGCCAATATGCTGA
1 GCCAATATGCTAATTCAAGGCCAACGACATTGGTCTTCAAGATGACAAAGGCACCAATATGCTGA
*
774939 TTCAAGGCCAGCAATATT-GGACTTAAAGGTGCCAATGTGCTGATTCAAG
66 TTCAAGGCCAGCAATATTAGG-CTT--A-G-GCCAATGTGCTAATTCAAG
774988 GCCA
1 GCCA
774992 GCGACATTGG
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
105 2 0.02
106 36 0.36
107 2 0.02
108 2 0.02
109 3 0.03
110 55 0.55
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (110 bp):
GCCAATATGCTAATTCAAGGCCAACGACATTGGTCTTCAAGATGACAAAGGCACCAATATGCTGA
TTCAAGGCCAGCAATATTAGGCTTAGGCCAATGTGCTAATTCAAG
Found at i:774981 original size:43 final size:43
Alignment explanation
Indices: 774878--775153 Score: 255
Period size: 43 Copynumber: 6.0 Consensus size: 43
774868 CTAATTCTAG
* * * *
774878 GCCAATATGCTAATTCAAGGCCAACGACATTGGTCTTAAAGAAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-----AAAGGT
*
774926 GCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGT
* * *
774969 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--G-T
* *
775015 AAAGGCACCAATATACTGATTCAAGGCCAGCGATATTGGGCTTAAAGGT
1 ----G--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGT
* * *
775064 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAGGT
*
775112 GCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGG
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
775154 AAGACGCCAC
Statistics
Matches: 193, Mismatches: 21, Indels: 33
0.78 0.09 0.13
Matches are distributed among these distances:
43 79 0.41
44 1 0.01
45 2 0.01
46 1 0.01
47 1 0.01
48 70 0.36
49 1 0.01
50 2 0.01
52 36 0.19
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (43 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGT
Found at i:775053 original size:95 final size:91
Alignment explanation
Indices: 774878--775153 Score: 426
Period size: 95 Copynumber: 3.0 Consensus size: 91
774868 CTAATTCTAG
* * *
774878 GCCAATATGCTAATTCAAGGCCAACGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTCA
*
774943 AGGCCAGCAATATTGGACTTAAAGGT
66 AGGCCAGCGATATTGGACTTAAAGGT
** *
774969 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGATAAAGGCACCAATATACTGA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GA-AAAGGTGCCAATATGCTGA
*
775034 TTCAAGGCCAGCGATATTGGGCTTAAAGGT
62 TTCAAGGCCAGCGATATTGGACTTAAAGGT
*
775064 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTCA
*
775129 AGGCCAGCGATATTAGACTTAAAGG
66 AGGCCAGCGATATTGGACTTAAAGG
775154 AAGACGCCAC
Statistics
Matches: 167, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
91 76 0.46
92 4 0.02
93 2 0.01
94 4 0.02
95 81 0.49
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (91 bp):
GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGGT
Found at i:775300 original size:34 final size:32
Alignment explanation
Indices: 775180--775406 Score: 198
Period size: 33 Copynumber: 7.0 Consensus size: 32
775170 GTGGGCTTTT
* * *
775180 GAAAAGGGTGCCACTGACTTGTGGGCTTAAAAG
1 GAAAA-GGTGCCACGGAGTTGTGGACTTAAAAG
* *
775213 GAGAAAGATGCCACGGAGTTGTGAACTTAAAAGG
1 GA-AAAGGTGCCACGGAGTTGTGGACTTAAAA-G
*
775247 GAAAAGGTGCCACGAAGTTGTGGACTTAAAAG
1 GAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
775279 GAACAAGGATGCCACGGAG-T-TGGACTTAAAA-
1 GAA-AAGG-TGCCACGGAGTTGTGGACTTAAAAG
*
775310 G----GGTGCCACGGAGTTATGGACTTAAAAAG
1 GAAAAGGTGCCACGGAGTTGTGGACTT-AAAAG
* ** * *
775339 AAAAAGAGTAACACAGAGTTGTGGATTTTAAAAAG
1 GAAAAG-GTGCCACGGAGTTGTGGA-CTT-AAAAG
* *
775374 AAAAAAGTGCCACGGAGTTGTGGACTTAAAAG
1 GAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
775406 G
1 G
775407 GTGCCACAGA
Statistics
Matches: 159, Mismatches: 21, Indels: 29
0.76 0.10 0.14
Matches are distributed among these distances:
25 10 0.06
26 3 0.02
27 7 0.04
28 4 0.03
31 1 0.01
32 20 0.13
33 57 0.36
34 44 0.28
35 13 0.08
ACGTcount: A:0.38, C:0.12, G:0.30, T:0.19
Consensus pattern (32 bp):
GAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
Found at i:775317 original size:25 final size:27
Alignment explanation
Indices: 775283--775336 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 27
775273 TAAAAGGAAC
775283 AAGGATGCCACGGAG-T-TGGACTTAA
1 AAGGATGCCACGGAGTTATGGACTTAA
*
775308 AAGGGTGCCACGGAGTTATGGACTTAA
1 AAGGATGCCACGGAGTTATGGACTTAA
775335 AA
1 AA
775337 AGAAAAAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 14 0.54
26 1 0.04
27 11 0.42
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.20
Consensus pattern (27 bp):
AAGGATGCCACGGAGTTATGGACTTAA
Found at i:775358 original size:59 final size:58
Alignment explanation
Indices: 775248--775359 Score: 136
Period size: 59 Copynumber: 1.9 Consensus size: 58
775238 CTTAAAAGGG
* * * ** *
775248 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAGGATGCCACGGAGTTGGACTT
1 AAAAGGTGCCACGAAGTTATGGACTTAAAAAGAAAAAGGATAACACAGAGTTGGACTT
*
775306 AAAAGGGTGCCACGGAGTTATGGACTTAAAAAGAAAAA-GAGTAACACAGAGTTG
1 AAAA-GGTGCCACGAAGTTATGGACTTAAAAAGAAAAAGGA-TAACACAGAGTTG
775360 TGGATTTTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
58 6 0.13
59 39 0.87
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.18
Consensus pattern (58 bp):
AAAAGGTGCCACGAAGTTATGGACTTAAAAAGAAAAAGGATAACACAGAGTTGGACTT
Found at i:775375 original size:35 final size:34
Alignment explanation
Indices: 775331--775397 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
775321 AGTTATGGAC
775331 TTAAAAAGAAAAAGAGTAACACAGAGTTGTGGATT
1 TTAAAAAGAAAAA-AGTAACACAGAGTTGTGGATT
** *
775366 TTAAAAAGAAAAAAGTGCCACGGAGTTGTGGA
1 TTAAAAAGAAAAAAGTAACACAGAGTTGTGGA
775398 CTTAAAAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.07, G:0.25, T:0.21
Consensus pattern (34 bp):
TTAAAAAGAAAAAAGTAACACAGAGTTGTGGATT
Done.