Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1300
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21764
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Found at i:4587 original size:21 final size:22
Alignment explanation
Indices: 4554--4597 Score: 56
Period size: 20 Copynumber: 2.0 Consensus size: 22
4544 AATTAATTTT
4554 TATTCAAATTTAAT-TA-AAAA
1 TATTCAAATTTAATATATAAAA
*
4574 TATTTAAATATTAATATATAAAA
1 TATTCAAAT-TTAATATATAAAA
4597 T
1 T
4598 TAATATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 5 0.25
22 2 0.10
23 5 0.25
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTCAAATTTAATATATAAAA
Found at i:4825 original size:64 final size:66
Alignment explanation
Indices: 4724--4897 Score: 275
Period size: 64 Copynumber: 2.7 Consensus size: 66
4714 AGGGTATTCT
* * *
4724 CATGAACCTCCTAGTTATAGCTATGTTGCAGCGTCACTTGCATTGT-C-AAAACTTTGCATATCG
1 CATGAACCTCTTAGTTATAGCTATGTTGCAGTGTCACTTGCATTGTACTAAAACTTAGCATATCG
4787 A
66 A
4788 CATGAACCTCTTAGTTATAGCTATGTTGCAGTGTCACTTGCA--GTACTAAAACTTAGCATATCG
1 CATGAACCTCTTAGTTATAGCTATGTTGCAGTGTCACTTGCATTGTACTAAAACTTAGCATATCG
4851 A
66 A
* *
4852 CATGAACCTCTTAGTTATGGCTATGTTGCAATGTCACTTGCATTGT
1 CATGAACCTCTTAGTTATAGCTATGTTGCAGTGTCACTTGCATTGT
4898 TAGAAGTTAA
Statistics
Matches: 101, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
62 2 0.02
63 1 0.01
64 96 0.95
66 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (66 bp):
CATGAACCTCTTAGTTATAGCTATGTTGCAGTGTCACTTGCATTGTACTAAAACTTAGCATATCG
A
Found at i:7349 original size:2 final size:2
Alignment explanation
Indices: 7342--7375 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7332 TTCGAAATAC
7342 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7376 GTAACAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8641 original size:16 final size:16
Alignment explanation
Indices: 8620--8665 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
8610 AGTTTTGATC
8620 ATTTTAGGTTCGAGTT
1 ATTTTAGGTTCGAGTT
*
8636 ATTTTA-GTTCGATTT
1 ATTTTAGGTTCGAGTT
*
8651 ATTTTAGGTTAGAGT
1 ATTTTAGGTTCGAGT
8666 AATTCAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 14 0.54
16 12 0.46
ACGTcount: A:0.22, C:0.04, G:0.22, T:0.52
Consensus pattern (16 bp):
ATTTTAGGTTCGAGTT
Found at i:15203 original size:16 final size:15
Alignment explanation
Indices: 15184--15213 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
15174 TAAATAAAAT
15184 TTTAAAATAATATTAA
1 TTTAAAATAA-ATTAA
15200 TTTAAAATAAATTA
1 TTTAAAATAAATTA
15214 TTGGAATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTAAAATAAATTAA
Found at i:15444 original size:19 final size:19
Alignment explanation
Indices: 15420--15465 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
15410 ATATTTTTAA
*
15420 ATTAATAAAAGATTATATC
1 ATTAATAAAAGATAATATC
*
15439 ATTAATAAAAGATAATATT
1 ATTAATAAAAGATAATATC
15458 ATT-ATAAA
1 ATTAATAAA
15466 TATAATTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (19 bp):
ATTAATAAAAGATAATATC
Found at i:15611 original size:37 final size:38
Alignment explanation
Indices: 15570--15654 Score: 104
Period size: 37 Copynumber: 2.3 Consensus size: 38
15560 AAATATTTAA
* *
15570 TTTAAACTTTAATTTA-TATTAT-ATTATCTAATTATTT
1 TTTAAA-TTTAATTAAGAATTATAATTATCTAATTATTT
*
15607 TTTAAATTTAATTAAGAATTATAATTGTCTAATTA-TT
1 TTTAAATTTAATTAAGAATTATAATTATCTAATTATTT
*
15644 TTAAAATTTAA
1 TTTAAATTTAA
15655 ATTATAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
36 8 0.19
37 23 0.55
38 11 0.26
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (38 bp):
TTTAAATTTAATTAAGAATTATAATTATCTAATTATTT
Found at i:15615 original size:31 final size:32
Alignment explanation
Indices: 15580--15674 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 32
15570 TTTAAACTTT
*
15580 AATTTATATTAT-ATTATCTAATTATTTTTTA
1 AATTTATATTATAATTATCTAATTATTTTTAA
*
15611 AATTTAATTAAGAATTATAATTGTCTAATTA-TTTTAA
1 AATTT-A-T----ATTATAATTATCTAATTATTTTTAA
* *
15648 AATTTAAATTATAATAATCTAATTATT
1 AATTTATATTATAATTATCTAATTATT
15675 AAGGGTTGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
31 21 0.41
32 2 0.04
33 1 0.02
36 1 0.02
37 15 0.29
38 11 0.22
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (32 bp):
AATTTATATTATAATTATCTAATTATTTTTAA
Found at i:15707 original size:31 final size:31
Alignment explanation
Indices: 15672--15763 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
15662 TAATCTAATT
*
15672 ATTAAGGGTTGTAATTGTCTAATTATTTTAA
1 ATTAAGGGTTGTAATCGTCTAATTATTTTAA
* *
15703 ATTAAGGGCTGTAATCATCTAATTA-TTT-A
1 ATTAAGGGTTGTAATCGTCTAATTATTTTAA
* * *
15732 AGTAAGAGTTGTAATCGTATAATTATTTTAA
1 ATTAAGGGTTGTAATCGTCTAATTATTTTAA
15763 A
1 A
15764 AATTTTAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
29 21 0.41
30 6 0.12
31 24 0.47
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.43
Consensus pattern (31 bp):
ATTAAGGGTTGTAATCGTCTAATTATTTTAA
Found at i:15723 original size:55 final size:57
Alignment explanation
Indices: 15628--15763 Score: 145
Period size: 55 Copynumber: 2.4 Consensus size: 57
15618 TTAAGAATTA
*
15628 TAATTGTCTAATTATTTTAAAATTTAAATTATAATAATCTAATTA-TTAAG-G-GTTG
1 TAATTGTCTAATTATTTT-AAATTTAAACTATAATAATCTAATTATTTAAGAGAGTTG
* * *
15683 TAATTGTCTAATTATTTTAAA-TTAAGGGCTGTAATCATCTAATTATTTAAGTAAGAGTTG
1 TAATTGTCTAATTATTTTAAATTTAA--ACTATAATAATCTAATTATTTAAG--AGAGTTG
* *
15743 TAATCGTATAATTATTTTAAA
1 TAATTGTCTAATTATTTTAAA
15764 AATTTTAATT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
53 4 0.06
54 3 0.04
55 32 0.47
56 5 0.07
59 1 0.01
60 23 0.34
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (57 bp):
TAATTGTCTAATTATTTTAAATTTAAACTATAATAATCTAATTATTTAAGAGAGTTG
Found at i:15747 original size:29 final size:30
Alignment explanation
Indices: 15674--15759 Score: 102
Period size: 29 Copynumber: 2.9 Consensus size: 30
15664 ATCTAATTAT
* *
15674 TAAGGGTTGTAATTGTCTAATTATTTTAAAT
1 TAAGGGTTGTAATCGTCTAATTA-TTTAAAG
* *
15705 TAAGGGCTGTAATCATCTAATTATTT-AAG
1 TAAGGGTTGTAATCGTCTAATTATTTAAAG
* *
15734 TAAGAGTTGTAATCGTATAATTATTT
1 TAAGGGTTGTAATCGTCTAATTATTT
15760 TAAAAATTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 24 0.51
30 3 0.06
31 20 0.43
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (30 bp):
TAAGGGTTGTAATCGTCTAATTATTTAAAG
Found at i:16093 original size:19 final size:18
Alignment explanation
Indices: 16069--16109 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
16059 ATTATATTTA
*
16069 TAATAATATTATCTTTCAT
1 TAATAATATAAT-TTTCAT
*
16088 TAATAATATAATTTTTAT
1 TAATAATATAATTTTCAT
16106 TAAT
1 TAAT
16110 TTAAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATAATATAATTTTCAT
Found at i:16170 original size:39 final size:40
Alignment explanation
Indices: 16127--16203 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 40
16117 TATACCAAAA
*
16127 TAATAATATA-ATTAGAAAATATTAACATAATAATAAATT
1 TAATAATATATATTAAAAAATATTAACATAATAATAAATT
* *
16166 TAATAATATATTTTTAAAAAATATTAACATTATAATAA
1 TAATAATATA-TATTAAAAAATATTAACATAATAATAA
16204 TAACAATAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 10 0.30
41 23 0.70
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (40 bp):
TAATAATATATATTAAAAAATATTAACATAATAATAAATT
Found at i:16384 original size:13 final size:13
Alignment explanation
Indices: 16343--16386 Score: 61
Period size: 13 Copynumber: 3.2 Consensus size: 13
16333 TAATTAATAC
16343 TTTAATAATTTAT
1 TTTAATAATTTAT
16356 TTTAAATTAATATTAT
1 TTT-AA-TAAT-TTAT
16372 TTTAATAATTTAT
1 TTTAATAATTTAT
16385 TT
1 TT
16387 AAAAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 9 0.32
14 6 0.21
15 6 0.21
16 7 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTAATAATTTAT
Found at i:16404 original size:29 final size:29
Alignment explanation
Indices: 16329--16412 Score: 105
Period size: 29 Copynumber: 2.8 Consensus size: 29
16319 ATTGAAAGTC
*
16329 AAAATAATTAATACTTTAATAATTTATTTT
1 AAAATAA-TAATACTTTAATAATTTATTTA
* * *
16359 AAATTAATATTATTTTAATAATTTATTTA
1 AAAATAATAATACTTTAATAATTTATTTA
*
16388 AAAATAAAAATACTTTAATGAATTT
1 AAAATAATAATACTTTAAT-AATTT
16413 GTCGGATTTA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
29 34 0.76
30 11 0.24
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (29 bp):
AAAATAATAATACTTTAATAATTTATTTA
Found at i:16879 original size:1 final size:1
Alignment explanation
Indices: 16845--16871 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
16835 AATATAACTC
16845 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
16872 CTGTTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:17680 original size:23 final size:22
Alignment explanation
Indices: 17653--17708 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
17643 AGAGATTTGA
*
17653 ATTTAAATTTATTATATATAATT
1 ATTTAAATTAATTATATA-AATT
* *
17676 TTTTAAAATAATTATATAAATT
1 ATTTAAATTAATTATATAAATT
*
17698 AATTAAATTAA
1 ATTTAAATTAA
17709 ATTACGAACT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTAAATTAATTATATAAATT
Found at i:18499 original size:18 final size:16
Alignment explanation
Indices: 18450--18502 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 16
18440 AAATATTTTA
18450 AAATTTATATATAATAT
1 AAATTTATATA-AATAT
18467 AAA-TTAT-TAATATAT
1 AAATTTATATAA-ATAT
18482 CATAATTTATATAAATAT
1 -A-AATTTATATAAATAT
18500 AAA
1 AAA
18503 ATATTTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
14 1 0.03
15 6 0.19
16 7 0.23
17 6 0.19
18 8 0.26
19 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATTTATATAAATAT
Found at i:19384 original size:14 final size:14
Alignment explanation
Indices: 19365--19411 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
19355 TTTCACTGTT
19365 TATTA-TATATTAAA
1 TATTATTATATT-AA
19379 TATTATTTTATATTAA
1 TATTA--TTATATTAA
*
19395 TATTATTATATTTA
1 TATTATTATATTAA
19409 TAT
1 TAT
19412 AACTAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
14 16 0.55
16 7 0.24
17 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTATTATATTAA
Found at i:19391 original size:19 final size:21
Alignment explanation
Indices: 19367--19412 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 21
19357 TCACTGTTTA
19367 TTATATATTAA-A-TATT-AT
1 TTATATATTAATATTATTAAT
19385 TT-TATATTAATATTATTATAT
1 TTATATATTAATATTATTA-AT
19406 TTATATA
1 TTATATA
19413 ACTAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 8 0.35
18 3 0.13
19 4 0.17
21 4 0.17
22 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATATATTAATATTATTAAT
Found at i:19433 original size:25 final size:24
Alignment explanation
Indices: 19405--19455 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
19395 TATTATTATA
19405 TTTATATAACTAATTTAAATAA-AAT
1 TTTATATAACT-A-TTAAATAATAAT
* *
19430 TTTATTTTACTATTAAATAATAAT
1 TTTATATAACTATTAAATAATAAT
19454 TT
1 TT
19456 GGATCAAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 8 0.35
24 6 0.26
25 9 0.39
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTATATAACTATTAAATAATAAT
Found at i:19734 original size:42 final size:42
Alignment explanation
Indices: 19687--19769 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
19677 AGTATAGGCC
*
19687 TAACCTAACATAAATTCATATTTAAAGAATTTACCAACTCTT
1 TAACCTAACATAAATTCACATTTAAAGAATTTACCAACTCTT
* *
19729 TAACCTATCATAAATTTACATTTAAAGAATTTACCAACTCT
1 TAACCTAACATAAATTCACATTTAAAGAATTTACCAACTCT
19770 GTCTTTTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.36
Consensus pattern (42 bp):
TAACCTAACATAAATTCACATTTAAAGAATTTACCAACTCTT
Found at i:19935 original size:22 final size:22
Alignment explanation
Indices: 19910--19957 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
19900 TATTATTTAA
*
19910 TAATAAAAAAATTATTTAAAT-T
1 TAATAAAAAAATT-TATAAATAT
* *
19932 TAATTATAAAATTTATAAATAT
1 TAATAAAAAAATTTATAAATAT
19954 TAAT
1 TAAT
19958 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATAAAAAAATTTATAAATAT
Found at i:19947 original size:23 final size:21
Alignment explanation
Indices: 19916--19965 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
19906 TTAATAATAA
19916 AAAAATTATTTAAAT-TTAATTAT
1 AAAAATTA--TAAATATTAATT-T
*
19939 AAAATTTATAAATATTAATTT
1 AAAAATTATAAATATTAATTT
19960 AAAAAT
1 AAAAAT
19966 AATATTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 11 0.46
22 6 0.25
23 7 0.29
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAAATTATAAATATTAATTT
Found at i:19958 original size:22 final size:21
Alignment explanation
Indices: 19917--19963 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
19907 TAATAATAAA
*
19917 AAAATTATTTAAATTTAATTAT
1 AAAATTATATAAATTTAATT-T
19939 AAAATT-TATAAATATTAATTT
1 AAAATTATATAAAT-TTAATTT
19960 AAAA
1 AAAA
19964 ATAATATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAATTATATAAATTTAATTT
Found at i:19964 original size:22 final size:21
Alignment explanation
Indices: 19916--19970 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
19906 TTAATAATAA
*
19916 AAAAATTATTTAAATTTAATT
1 AAAAATTATATAAATTTAATT
19937 ATAAAATT-TATAAATATTAATTT
1 A-AAAATTATATAAAT-TTAA-TT
*
19960 AAAAATAATAT
1 AAAAATTATAT
19971 TTGTATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 7 0.25
22 15 0.54
23 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAAATTATATAAATTTAATT
Found at i:20911 original size:2 final size:2
Alignment explanation
Indices: 20904--20943 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
20894 TGGTAAGTAC
20904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20944 TTAACTTGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21600 original size:19 final size:19
Alignment explanation
Indices: 21558--21600 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
21548 AATAAAATCC
*
21558 TAAATGTATCATGTCAATCT
1 TAAATGTATCA-GTCAACCT
21578 TAAATGTATCA-TCATACCT
1 TAAATGTATCAGTCA-ACCT
21597 TAAA
1 TAAA
21601 ATTATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 7 0.33
20 11 0.52
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (19 bp):
TAAATGTATCAGTCAACCT
Done.