genome.fa.s1302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1302
Parameters: 2 7 7 80 10 50 1000
Length:  52338

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40--1370	31	43.8	32	83	9	1383	18	18	32	30	1.95
40--1371	32	43.9	30	82	11	1193	18	18	32	30	1.95
1353--2458	27	41.0	27	94	3	1946	26	14	35	22	1.93
2421--2505	44	1.9	44	97	0	161	36	11	28	23	1.90
2468--2534	30	2.3	28	78	12	80	34	13	28	23	1.93
2476--2533	30	1.9	31	89	3	91	32	15	27	24	1.95
3850--3897	22	2.2	22	84	0	60	6	12	10	70	1.32
9906--9942	2	18.5	2	94	0	65	51	2	0	45	1.15
10319--10359	11	3.5	11	81	12	55	2	19	0	78	0.87
10319--10373	24	2.3	22	77	17	56	9	20	0	70	1.13
10749--10779	1	31.0	1	100	0	62	0	0	0	100	0.00
11640--11933	32	9.2	32	89	8	442	15	19	33	31	1.93
11640--12213	63	9.3	64	81	13	599	17	19	32	30	1.95
11640--12213	95	6.2	95	79	14	593	17	19	32	30	1.95
11961--12159	30	6.5	30	77	16	103	20	20	30	28	1.97
11946--12203	32	8.3	32	79	13	242	19	18	31	29	1.96
12002--12213	65	3.4	64	82	12	246	18	18	32	30	1.95
12240--12487	28	9.1	27	79	9	274	26	17	32	23	1.97
12240--12487	27	9.2	26	78	12	250	26	17	32	23	1.97
12240--12487	78	3.1	79	77	11	268	26	17	32	23	1.97
12465--12553	45	2.0	44	85	10	121	35	11	26	25	1.90
12521--12578	30	1.9	31	89	3	91	32	15	27	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13596--13620	1	25.0	1	100	0	50	0	0	0	100	0.00
20378--20418	11	3.5	11	81	12	55	2	19	0	78	0.87
20378--20432	24	2.3	22	77	17	56	9	20	0	70	1.13
20773--20817	22	2.0	22	82	4	54	17	17	15	48	1.81
32892--33064	71	2.4	71	75	9	172	23	21	13	41	1.89
33008--33116	56	1.9	56	87	7	159	26	26	11	35	1.90
33064--33312	74	3.4	74	78	10	253	24	24	14	36	1.93
33209--33342	69	2.0	69	79	7	150	27	25	15	31	1.96
42644--42683	2	20.0	2	100	0	80	50	0	0	50	1.00
46814--46845	16	2.0	16	100	0	64	18	12	0	68	1.20

Tables:   1

The End!