Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1307
Parameters: 2 7 7 80 10 50 1000
Length:  60358

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82--127
23
2.0
23
83
4
58
60
2
0
36
1.09
436--466
2
15.5
2
100
0
62
51
0
0
48
1.00
512--540
2
14.5
2
100
0
58
51
0
0
48
1.00
1002--1087
30
3.0
29
91
3
129
45
2
11
40
1.53
1315--1428
10
11.8
9
72
23
74
60
1
1
35
1.17
1300--1407
40
2.7
38
82
15
121
60
3
3
32
1.32
1388--1487
8
11.9
8
68
21
62
56
1
2
41
1.18
1391--1471
17
4.4
17
72
23
65
54
0
1
44
1.08
1383--1471
32
2.7
32
79
15
101
55
0
1
43
1.07
1382--1471
19
4.8
18
72
25
62
55
0
1
43
1.07
1388--1470
26
2.9
26
80
18
94
54
0
1
44
1.08
1432--1486
26
2.1
26
82
0
65
56
1
3
38
1.28
2293--2329
15
2.4
16
95
4
67
45
5
5
43
1.49
3211--3253
21
2.1
20
87
12
61
60
0
0
39
0.97
3231--3335
35
2.9
36
72
6
106
56
0
0
42
1.06
6533--6581
17
3.1
16
85
5
55
46
2
4
46
1.33
7111--7264
10
16.1
10
65
18
51
39
1
0
58
1.11
7147--7232
20
4.0
20
71
25
61
47
0
0
52
1.00
7134--7265
8
16.2
8
68
21
62
40
0
0
59
1.03
7114--7264
19
8.4
18
73
22
88
39
1
0
58
1.11
7243--7293
26
2.0
26
88
7
77
25
3
1
68
1.17
7219--7297
21
3.6
21
72
18
63
27
2
1
68
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8073--8134
31
2.0
31
96
0
115
29
22
8
40
1.82
8609--8646
6
6.2
6
87
6
58
34
0
13
52
1.40
8607--8645
19
2.0
20
95
5
71
35
0
12
51
1.40
9317--9362
15
2.9
16
81
12
60
41
0
0
58
0.98
9876--9924
11
4.5
11
78
17
57
63
0
0
36
0.95
9875--9931
22
2.5
24
82
11
82
61
0
0
38
0.96
9874--9979
33
3.2
33
82
6
119
54
0
0
45
0.99
9887--10001
18
6.1
18
68
21
58
54
0
0
45
0.99
9901--10001
40
2.7
39
76
19
92
53
0
0
46
1.00
10634--10674
21
2.0
21
90
9
66
58
2
0
39
1.11
10634--10687
21
2.7
20
83
11
65
53
1
0
44
1.11
10873--10906
11
2.9
12
86
8
52
70
0
0
29
0.87
12087--12123
11
3.4
11
84
0
56
37
0
0
62
0.96
12059--12617
298
1.9
299
91
1
924
36
8
6
48
1.61
12661--12698
16
2.3
17
81
4
51
52
0
0
47
1.00
13694--13740
23
2.1
22
88
7
69
55
8
0
36
1.31
14371--14418
20
2.3
22
89
7
73
56
2
10
31
1.45
18411--18501
44
2.1
44
97
0
173
38
18
25
17
1.92
24738--24792
17
3.3
17
82
2
67
56
5
3
34
1.40
24797--24827
15
2.1
15
93
0
53
51
0
3
45
1.17
24960--25012
25
2.2
24
82
3
61
60
3
0
35
1.15
25071--25104
17
1.9
18
88
5
52
61
2
2
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25282--25476
2
106.5
2
68
20
106
51
3
2
42
1.30
25373--25476
27
3.9
26
73
19
74
52
1
2
42
1.27
25528--25570
9
4.9
9
83
13
54
67
0
0
32
0.91
25528--25570
17
2.4
18
92
3
70
67
0
0
32
0.91
25537--25570
8
4.0
8
85
14
50
70
0
0
29
0.87
25637--25676
2
20.0
2
84
0
53
50
0
5
45
1.23
25656--25728
11
6.7
11
75
13
55
34
0
4
61
1.15
25795--25840
21
2.2
21
88
7
67
67
0
4
28
1.10
26344--26509
2
91.0
2
66
21
62
50
4
2
42
1.34
26343--26504
12
13.8
12
69
14
72
50
4
2
43
1.35
26422--26512
5
18.0
5
74
18
82
58
4
0
37
1.18
26407--26502
28
3.3
28
76
15
90
54
4
1
40
1.27
26434--26510
30
2.6
30
85
4
111
58
5
0
36
1.21
27036--27384
121
2.9
117
83
10
390
42
2
2
52
1.27
27084--27424
121
2.9
114
79
11
255
41
2
2
53
1.28
27206--27432
117
1.9
114
79
8
242
42
2
1
53
1.25
27939--28334
91
4.3
92
86
4
507
41
7
17
33
1.78
27923--28334
183
2.2
184
84
6
523
41
7
16
33
1.78
29190--29339
74
2.0
74
98
0
291
34
16
13
36
1.87
31799--31837
12
3.4
11
82
10
51
46
0
5
48
1.24
32502--32536
2
17.5
2
93
0
61
51
0
0
48
1.00
32961--33011
22
2.2
24
86
6
70
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32969--33026
27
2.1
29
84
12
77
32
0
1
65
1.03
33303--33333
16
1.9
16
93
0
53
51
0
6
41
1.27
33412--33451
20
2.0
20
85
4
55
55
2
10
32
1.47
35558--35585
2
14.0
2
100
0
56
50
0
50
0
1.00
35529--35566
19
2.0
19
85
10
51
50
5
34
10
1.59
36630--36660
2
15.5
2
100
0
62
51
0
0
48
1.00
37795--37844
14
3.5
14
75
5
55
52
2
0
46
1.12
39825--39863
19
2.1
19
85
9
53
71
2
2
23
1.10
39825--39862
18
2.1
19
90
5
60
71
2
2
23
1.12
40103--40127
2
12.5
2
100
0
50
48
0
0
52
1.00
40443--40540
49
2.0
48
88
9
146
52
6
7
34
1.54
40599--40624
13
2.0
13
100
0
52
23
0
0
76
0.78
41706--41746
21
1.9
22
95
5
75
19
26
26
26
1.99
42153--42192
6
6.7
6
97
0
62
60
0
0
40
0.97
44413--44443
2
15.5
2
100
0
62
51
0
48
0
1.00
45344--45394
8
6.1
8
74
17
50
52
0
1
45
1.12
46434--46518
16
5.3
16
69
10
57
43
24
11
20
1.85
47284--47327
22
1.9
24
86
9
65
43
18
6
31
1.76
47380--47428
16
3.0
16
79
8
55
44
22
12
20
1.84
52574--52603
10
3.0
10
95
0
51
73
10
16
0
1.09
55910--55964
23
2.4
25
82
14
73
61
0
3
34
1.13
56038--56142
30
3.5
30
75
14
85
40
4
3
51
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57641--57684
16
2.8
16
86
6
54
65
2
0
31
1.05
57978--58041
17
3.8
17
75
17
62
39
3
1
56
1.25

Tables:   1

The End!