Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1309
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46475
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.19
Found at i:2450 original size:805 final size:806
Alignment explanation
Indices: 912--3252 Score: 3862
Period size: 805 Copynumber: 2.9 Consensus size: 806
902 CACTCAGCCC
* **
912 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
* * * *
976 GCGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
* * *
1041 ACCTGCAGCATCTG-CCA--CCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGGCAGCAT
129 ACCTGCAGCCTCTGCCCACGCCACAACCGGGACTA-CCGACTCGAATTCGGGAACTTGGCAGCAT
* * ** * *
1102 CACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAG
193 CACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAA
* *
1167 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCA
258 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1232 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
323 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
1297 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
388 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
1362 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
453 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
1427 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
518 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
*
1492 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
583 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
* * * **
1557 CACGCGTGCCAACCGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGA
648 CACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGA
*
1622 AGGGTC-CCGTCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGCCTCGCGCGAC
713 AGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGCCTCGCGCGAC
1686 CTGGATTTTAATCGAGAGGGACACTGCCG
778 CTGGATTTTAATCGAGAGGGACACTGCCG
1715 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1780 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
1845 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
131 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
1910 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
1975 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
2040 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
326 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
2105 AGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGC
391 AGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGC
*
2170 AGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGCCAG
456 AGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAG
* *
2235 GCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGGAAC
521 GCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGGAAC
2300 TTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCACAC
586 TTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACAC
*
2364 GCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGG
651 GCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGAAGG
* *
2429 GTCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTG
716 GTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGCCTCGCGCGACCTG
2494 GATTTTAATCGAGAGGGACACTGCCG
781 GATTTTAATCGAGAGGGACACTGCCG
2520 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
2585 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
2650 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
131 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
*
2715 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAACCGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
* * ** * *
2780 TCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCACCG
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
* * * *
2844 CAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACCGAG
326 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
* * * * *
2909 AGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAACCG
391 AGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCG
* * * *
2974 GCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCATGGC
454 GCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCATGGC
3038 CAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
518 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
* * * * **
3102 AACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTGCCC
583 AACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTTACC
* ** * * ** *
3165 CACACACGCGTGCCATGCGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGG
644 CGCACACGCGTGCCAAACGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGG
*
3229 ACCGCGCAGGGTCTCCATCACCGC
706 ACCGCGAAGGGTCTCCATCACCGC
3253 GACAAGGTTT
Statistics
Matches: 1451, Mismatches: 70, Indels: 27
0.94 0.05 0.02
Matches are distributed among these distances:
802 30 0.02
803 104 0.07
804 170 0.12
805 936 0.65
806 131 0.09
807 3 0.00
808 27 0.02
810 50 0.03
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (806 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
AGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGC
AGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAG
GCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGGAAC
TTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACAC
GCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGAAGG
GTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGCCTCGCGCGACCTG
GATTTTAATCGAGAGGGACACTGCCG
Found at i:3105 original size:403 final size:402
Alignment explanation
Indices: 912--3252 Score: 3824
Period size: 402 Copynumber: 5.8 Consensus size: 402
902 CACTCAGCCC
* **
912 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
* * * *
976 GCGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
* * *
1041 ACCTGCAGCATCTG-CCA--CCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGGCAGCAT
129 ACCTGCAGCCTCTGCCCACGCCACAACCGGGACTA-CCGACTCGAATTCGGGAACTTGGCAGCAT
* * ** * *
1102 CACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAG
193 CACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAA
1167 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGG-CCTTCATC
258 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCC--CATC
1231 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAAT
321 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAAT
1296 CGAGAGGGACACTGCCG
386 CGAGAGGGACACTGCCG
1313 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1378 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
1443 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
131 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
*
1508 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAACCGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
* * ** * *
1573 TCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCCCGTCACCGC
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCCCATCACCGC
* *
1638 AGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGCCTCGCGCGACCTGGATTTTAATCGAGA
326 AGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAGA
1703 GGGACACTGCCG
391 GGGACACTGCCG
1715 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1780 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
1845 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
131 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
1910 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
1975 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTC-CCATCACCG
2040 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
325 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
2105 AGGGACACTGCCG
390 AGGGACACTGCCG
2118 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
*
2183 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
* * * *
2248 CTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCAC
131 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
2313 CGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
2377 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTC-CCATCACCG
2442 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
325 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
2507 AGGGACACTGCCG
390 AGGGACACTGCCG
2520 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
2585 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
2650 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
131 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
*
2715 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAACCGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
* * ** * *
2780 TCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCCCGTCACCGC
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCCCATCACCGC
* * * *
2845 AGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACCGAGA
326 AGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAGA
2910 GGGACACTCTGCCG
391 GGGACA--CTGCCG
* * * * * * *
2924 GGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAACCGGCGGGACGAGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
* *
2989 CGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCA
* * *
3052 CCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGGAACTTGGCAGAATCA
130 CCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCA
* * * * ** *
3117 GCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTGCCCCACACACGCGTGCCA
195 CCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTTACCCGCACACGCGTGCCA
** * * ** * *
3180 TGCGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTC
256 AACGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTC-C
3244 CATCACCGC
317 CATCACCGC
3253 GACAAGGTTT
Statistics
Matches: 1835, Mismatches: 86, Indels: 31
0.94 0.04 0.02
Matches are distributed among these distances:
400 30 0.02
401 104 0.06
402 873 0.48
403 631 0.34
404 126 0.07
405 26 0.01
407 36 0.02
408 9 0.00
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (402 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGA
TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCCCATCACCGC
AGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAGA
GGGACACTGCCG
Found at i:4414 original size:103 final size:101
Alignment explanation
Indices: 4262--4450 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
4252 CGGCCCGGGG
*
4262 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
4327 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
4363 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
4428 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
4451 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:4690 original size:64 final size:64
Alignment explanation
Indices: 4611--4732 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
4601 CGTTTGGTTG
*
4611 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
4675 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
4733 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:5240 original size:102 final size:102
Alignment explanation
Indices: 5071--5257 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
5061 GGCCAGGTGC
* *
5071 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
5136 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
5173 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
5236 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
5258 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:5328 original size:64 final size:62
Alignment explanation
Indices: 5168--5343 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
5158 GCTGCGGGCG
* ** *
5168 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
5230 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
5291 CC
62 -C
5293 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
5344 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:5421 original size:819 final size:811
Alignment explanation
Indices: 3600--5507 Score: 2339
Period size: 819 Copynumber: 2.3 Consensus size: 811
3590 GCGCGCGCAA
* * *** * *
3600 CGCCCGCCCTCGGGTGCGGACGGCCGCGGCACCCGCA-AAAGCCACGAGCATGGTGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCA--CGCACCCGGCCAGGAGCACGGTGCGCGCCCTT
* * * * ** *
3664 CCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCAATGGGTGCGCACCCTTGC
64 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TG-GGGGCACCGGGTGCGCACCGTTGC
* * *
3728 CGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGAT
127 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT
* * *
3793 GCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGAGGGGGGAGGGACGGATGC
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGC
*
3858 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTC
257 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTC
*
3923 GTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAT
322 CTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAA-
* *
3988 GGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
376 -GGGGAGCGGTGT----G--GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
* * * **
4053 GCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGATGGATTTCTTTGTTGT
434 G-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGT
* * * *
4118 CACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCGAG
498 CACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAG
* * * *
4183 ACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGTGCGCGGGGCCGAGGCTCG
563 ACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACA
* *
4248 CACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
628 CACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
* * * *
4313 GCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
* * * * *
4378 CCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACCTCGCGGAGCGACGGTGCGCGCCT
* * * * * *
4432 CGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGGGAGCACGGGGCGCGCCCTTCC
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
*
4497 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGGTGCGCACCGTTGTCG
66 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCT-G-GGGGCACCGGGTGCGCACCGTTGCCG
* *
4562 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGGAGGGACGGAT
129 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGG--AGAGGGGAGGGACGGAT
* *
4627 GCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAGAGAGGGGGGAGGGCCGGAT
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTT-G-GAGGGGGGAGGGACGGAT
* * *
4691 GGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
255 GCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
*
4755 TCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCGGCG-A-GTG-GCGG
320 TCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGG
* * *
4815 -GT-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAGGTT
385 TGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCTAGGTT
*
4877 GCTCAAGTATCACACCCCCTATAGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-
449 GCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA-AGT
* * * *
4939 GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACC
511 GACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACCC-CACCACC
* * *
5002 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCA
574 TCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGG-GGCCGAGGCACACACCCGG-C-
* *
5066 GGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGA
636 ----C-CGG-GCGCGCCCTGCCCGCCCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGA
* *
5130 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
*
5195 CCTGGGGTCGGGGGCGGGCGGGGCGCACGCCAT-GCGGAGC-ACGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACC-TCGCGGAGCGACGGTGCGCGCCT
*
5248 CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
1 CGCCCACCCT--CGGGTGC-GGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
* *
5313 TCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGGGGAGCACCGGGTGCGCACAGTTG
63 TCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TGGGG-GCACCGGGTGCGCACCGTTG
* * * *
5378 CCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGGA
126 CCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGA
* ** * * *
5443 TGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACGG
191 T-GCC-GGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGG
5507 A
253 A
5508 CGGCCTATGT
Statistics
Matches: 943, Mismatches: 99, Indels: 82
0.84 0.09 0.07
Matches are distributed among these distances:
807 10 0.01
808 159 0.17
809 39 0.04
810 7 0.01
814 1 0.00
815 4 0.00
816 41 0.04
817 139 0.15
818 27 0.03
819 174 0.18
820 7 0.01
821 1 0.00
822 16 0.02
823 23 0.02
830 3 0.00
831 29 0.03
832 120 0.13
833 2 0.00
834 121 0.13
835 20 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (811 bp):
CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTGGGGGCACCGGGTGCGCACCGTTGCCGGG
GTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCG
GGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGCTTGG
GGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCG
GCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGG
CACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCTAGGTTGCTCAAG
TATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTC
GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGG
CGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGC
CCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCAC
CCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGG
CGCACACCTCGCGGAGCGACGGTGCGCGCCT
Found at i:13885 original size:418 final size:404
Alignment explanation
Indices: 13089--13889 Score: 1081
Period size: 418 Copynumber: 1.9 Consensus size: 404
13079 CACTCAGCCC
* *
13089 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
13154 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
13219 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
13284 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
13349 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
13414 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
13479 GAGGGACACTGCCG
391 GAGGGACACTGCCG
**
13493 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
13557 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
13621 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
13684 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
13749 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
13814 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
*
13878 TGACCTGGATTT
372 CGACCTGGATTT
13890 CACACGAGGC
Statistics
Matches: 343, Mismatches: 35, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
403 55 0.16
404 101 0.29
405 3 0.01
412 1 0.00
414 1 0.00
415 3 0.01
416 2 0.01
417 45 0.13
418 131 0.38
419 1 0.00
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (404 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
GAGGGACACTGCCG
Found at i:15260 original size:358 final size:358
Alignment explanation
Indices: 14603--15319 Score: 1434
Period size: 358 Copynumber: 2.0 Consensus size: 358
14593 GCGTGCCAAA
14603 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
14668 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
14733 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
14798 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
14863 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
14928 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
14961 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
15026 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
15091 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
15156 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
15221 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
15286 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
15319 C
1 C
15320 CTTCCGGCAG
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 359 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.13
Consensus pattern (358 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
Found at i:15776 original size:402 final size:403
Alignment explanation
Indices: 14961--16240 Score: 2045
Period size: 401 Copynumber: 3.2 Consensus size: 403
14951 GCGAGCCTTG
14961 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
15026 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
15091 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
*
15156 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
15221 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
15286 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
15350 CACGCGTGCCAAA
391 CACGCGTGCCAAA
15363 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
15428 CCGCAGCTGGGCATCCGGTCACCG-AAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
15492 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
15557 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
* *
15622 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
*
15687 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
*
15752 CACGCGTGCCAAC
391 CACGCGTGCCAAA
* * ** * *
15765 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
* * * *
15829 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
* * * * *
15894 GAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
131 GAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAA
* * * *
15959 CCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCAT
194 CCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAT
16023 GGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
258 GGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
* * * * *
16087 GGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTG
323 GGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTT
* * **
16150 CCCCACACACGCGTGCCATG
384 ACCCGCACACGCGTGCCAAA
* * ** * *
16170 CGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCA
1 CGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCA
16234 TCACCGC
63 TCACCGC
16241 GACAAGGTTT
Statistics
Matches: 817, Mismatches: 48, Indels: 20
0.92 0.05 0.02
Matches are distributed among these distances:
401 301 0.37
402 226 0.28
403 95 0.12
404 124 0.15
405 26 0.03
407 36 0.04
408 9 0.01
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.12
Consensus pattern (403 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCA
CACGCGTGCCAAA
Found at i:25437 original size:103 final size:101
Alignment explanation
Indices: 25285--25473 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
25275 CGGCCCGGGG
*
25285 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
25350 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
25386 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
25451 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
25474 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:25713 original size:64 final size:64
Alignment explanation
Indices: 25634--25755 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
25624 CGTTTGGTTG
*
25634 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
25698 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
25756 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:26263 original size:102 final size:102
Alignment explanation
Indices: 26094--26280 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
26084 GGCCAGGTGC
* *
26094 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
26159 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
26196 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
26259 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
26281 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:26351 original size:64 final size:62
Alignment explanation
Indices: 26191--26366 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
26181 GCTGCGGGCG
* ** *
26191 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
26253 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
26314 CC
62 -C
26316 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
26367 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:26444 original size:819 final size:811
Alignment explanation
Indices: 24623--26530 Score: 2339
Period size: 819 Copynumber: 2.3 Consensus size: 811
24613 GCGCGCGCAA
* * *** * *
24623 CGCCCGCCCTCGGGTGCGGACGGCCGCGGCACCCGCA-AAAGCCACGAGCATGGTGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCA--CGCACCCGGCCAGGAGCACGGTGCGCGCCCTT
* * * * ** *
24687 CCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCAATGGGTGCGCACCCTTGC
64 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TG-GGGGCACCGGGTGCGCACCGTTGC
* * *
24751 CGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGAT
127 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT
* * *
24816 GCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGAGGGGGGAGGGACGGATGC
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGC
*
24881 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTC
257 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTC
*
24946 GTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAT
322 CTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAA-
* *
25011 GGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
376 -GGGGAGCGGTGT----G--GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
* * * **
25076 GCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGATGGATTTCTTTGTTGT
434 G-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGT
* * * *
25141 CACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCGAG
498 CACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAG
* * * *
25206 ACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGTGCGCGGGGCCGAGGCTCG
563 ACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACA
* *
25271 CACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
628 CACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGA
* * * *
25336 GCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
* * * * *
25401 CCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACCTCGCGGAGCGACGGTGCGCGCCT
* * * * * *
25455 CGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGGGAGCACGGGGCGCGCCCTTCC
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
*
25520 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGGTGCGCACCGTTGTCG
66 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCT-G-GGGGCACCGGGTGCGCACCGTTGCCG
* *
25585 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGGAGGGACGGAT
129 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGG--AGAGGGGAGGGACGGAT
* *
25650 GCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAGAGAGGGGGGAGGGCCGGAT
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTT-G-GAGGGGGGAGGGACGGAT
* * *
25714 GGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
255 GCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
*
25778 TCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCGGCG-A-GTG-GCGG
320 TCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGG
* * *
25838 -GT-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAGGTT
385 TGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCTAGGTT
*
25900 GCTCAAGTATCACACCCCCTATAGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-
449 GCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA-AGT
* * * *
25962 GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACC
511 GACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACCC-CACCACC
* * *
26025 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCA
574 TCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGG-GGCCGAGGCACACACCCGG-C-
* *
26089 GGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGA
636 ----C-CGG-GCGCGCCCTGCCCGCCCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGA
* *
26153 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
*
26218 CCTGGGGTCGGGGGCGGGCGGGGCGCACGCCAT-GCGGAGC-ACGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACC-TCGCGGAGCGACGGTGCGCGCCT
*
26271 CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
1 CGCCCACCCT--CGGGTGC-GGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
* *
26336 TCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGGGGAGCACCGGGTGCGCACAGTTG
63 TCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TGGGG-GCACCGGGTGCGCACCGTTG
* * * *
26401 CCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGGA
126 CCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGA
* ** * * *
26466 TGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACGG
191 T-GCC-GGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGG
26530 A
253 A
26531 CGGCCTATGT
Statistics
Matches: 943, Mismatches: 99, Indels: 82
0.84 0.09 0.07
Matches are distributed among these distances:
807 10 0.01
808 159 0.17
809 39 0.04
810 7 0.01
814 1 0.00
815 4 0.00
816 41 0.04
817 139 0.15
818 27 0.03
819 174 0.18
820 7 0.01
821 1 0.00
822 16 0.02
823 23 0.02
830 3 0.00
831 29 0.03
832 120 0.13
833 2 0.00
834 121 0.13
835 20 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (811 bp):
CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTGGGGGCACCGGGTGCGCACCGTTGCCGGG
GTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCG
GGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGCTTGG
GGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCG
GCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGG
CACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCTAGGTTGCTCAAG
TATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTC
GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGG
CGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGC
CCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCAC
CCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGG
CGCACACCTCGCGGAGCGACGGTGCGCGCCT
Found at i:41125 original size:62 final size:60
Alignment explanation
Indices: 40931--41133 Score: 182
Period size: 62 Copynumber: 3.2 Consensus size: 60
40921 CGGCAACTGT
*
40931 GCGCACCCGGTGCTCCCCACGGTGTGCGCCGCGACCGCCCCC-ACCCCAGGGGGCGGGAAGGGC
1 GCGCA-CC-GTGCTCCGCACGG-GTGCGCCGCGACCGCCCCCGACCCCAGGGGGCGGG-AGGGC
* *
40994 GCGCACCGTGCTCCTGGC-CGGGTGCGTGCCGCGGCCG-CCCCGCACCCCCCAGGGTGG-GCGA-
1 GCGCACCGTGCTCC--GCACGGGTGC--GCCGCGACCGCCCCCG-A--CCCCAGGG-GGCGGGAG
41055 GGC
58 GGC
* * *
41058 GCGCACCGTGCTCCGCATGGCGTGCGCCCCGCCCGCCCCCGACCCCAGGGGGCGGGATGGGC
1 GCGCACCGTGCTCCGCACGG-GTGCGCCGCGACCGCCCCCGACCCCAGGGGGCGGGA-GGGC
*
41120 GCGCACCGTTCTCC
1 GCGCACCGTGCTCC
41134 CGCCCGCAGC
Statistics
Matches: 117, Mismatches: 8, Indels: 31
0.75 0.05 0.20
Matches are distributed among these distances:
59 2 0.02
60 11 0.09
61 11 0.09
62 36 0.31
63 22 0.19
64 22 0.19
65 1 0.01
66 10 0.09
67 2 0.02
ACGTcount: A:0.08, C:0.45, G:0.38, T:0.09
Consensus pattern (60 bp):
GCGCACCGTGCTCCGCACGGGTGCGCCGCGACCGCCCCCGACCCCAGGGGGCGGGAGGGC
Found at i:41222 original size:102 final size:102
Alignment explanation
Indices: 41044--41230 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
41034 CGCACCCCCC
* *
41044 AGGGTGGGCGAGGCGCGCACCGTGCTCCGCATGGCGTGCGCCCCGCCCGCCCCCGACCCCAGGGG
1 AGGGTGGGCGAGGCGCGCACCGTGCTCCGCATGGCGTGCGCCCCGACCGCCCCCGACACCAGGGG
41109 GCGGGATGGGCGCGCACCGTTCTCCCGCCCGCAGCCG
66 GCGGGATGGGCGCGCACCGTTCTCCCGCCCGCAGCCG
*
41146 AGGGTGGGCGAGGCGCGCACCGGTGCTCCGCATGGTGTGCGCCCCGACCGCCCCC-ACACCAGGG
1 AGGGTGGGCGAGGCGCGCACC-GTGCTCCGCATGGCGTGCGCCCCGACCGCCCCCGACACCAGGG
41210 GGCGGGCA-GGGCGCGCACCGT
65 GGCGGG-ATGGGCGCGCACCGT
41231 GCACCTGGCC
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 48 0.60
103 32 0.40
ACGTcount: A:0.10, C:0.41, G:0.41, T:0.09
Consensus pattern (102 bp):
AGGGTGGGCGAGGCGCGCACCGTGCTCCGCATGGCGTGCGCCCCGACCGCCCCCGACACCAGGGG
GCGGGATGGGCGCGCACCGTTCTCCCGCCCGCAGCCG
Found at i:41670 original size:64 final size:64
Alignment explanation
Indices: 41569--41690 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
41559 CACCGATAGC
*
41569 ACATGCGGAGGCCCAAGCGTGGGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCCTCTCTA
1 ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCCTCTCTA
* * * *
41633 ACATGCGGAGGGCCAAGCGTGCGCAACGAGTCCCTCCCCAGCATCCGTCCCTCCCCCC
1 ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCC
41691 CAACCAAACG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.18, C:0.46, G:0.23, T:0.13
Consensus pattern (64 bp):
ACATGCGGAGGCCCAAGCGTGCGCAACGAGTCCCTCCCAACCATCCGGCCCTCCCCCCTCTCTA
Found at i:41938 original size:63 final size:62
Alignment explanation
Indices: 41750--41944 Score: 200
Period size: 63 Copynumber: 3.1 Consensus size: 62
41740 CGACAACGGT
* *
41750 GCGCACCCGGTGCCCCGCGAGGTGTGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAGGGC
1 GCGCA-CCGGCGCCCCGCGAGGTGCGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAGGGC
* * * * * * * * * *
41813 GCGCCCCGTGCTCCCGCCCG-GGTCCGTGCCGCGGCCGCCCGCA--CCAGAGGGCGGG-CGAGGC
1 GCGCACCG-GCGCCC-CGCGAGGTGCGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAG-GGC
*
41874 GCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCCACCCCAGGGGGCGGGAAGGGC
1 GCGCACCGGCGCCCCGCGAGGTGCGCGCCCCGACCG-CCCCCACCCCAGGGGGCGGGAAGGGC
41937 GCGCACCG
1 GCGCACCG
41945 TGCTCCTGGC
Statistics
Matches: 101, Mismatches: 23, Indels: 16
0.72 0.16 0.11
Matches are distributed among these distances:
59 3 0.03
60 18 0.18
61 26 0.26
62 3 0.03
63 47 0.47
64 4 0.04
ACGTcount: A:0.10, C:0.46, G:0.41, T:0.04
Consensus pattern (62 bp):
GCGCACCGGCGCCCCGCGAGGTGCGCGCCCCGACCGCCCCCACCCCAGGGGGCGGGAAGGGC
Found at i:41972 original size:103 final size:101
Alignment explanation
Indices: 41851--42039 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
41841 CCGCGGCCGC
41851 CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCC
1 CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCG-CCCCC
*
41916 ACCCCAGGGGGCGGGAAGGGCGCGCACCGTGCTCCTGG
65 ACCAC-GGGGGCGGGAAGGGCGCGCACCGTGCTCCTGG
* * * * * *
41954 CCGCACCCGAGGGTGGGCGAGGCGCGCACCGGCGCTCCGCGTGGTGTGCGCCCCGGCCGCCCCCA
1 CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCA
42019 CCACGGGGGCGGGAAGGGCGC
66 CCACGGGGGCGGGAAGGGCGC
42040 CCCCGGGCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 9 0.11
103 53 0.67
ACGTcount: A:0.11, C:0.42, G:0.43, T:0.05
Consensus pattern (101 bp):
CCGCACCAGAGGGCGGGCGAGGCGCGCACCGGCGCCCCGCGAGGTGGGCGCCCCGACCGCCCCCA
CCACGGGGGCGGGAAGGGCGCGCACCGTGCTCCTGG
Found at i:43900 original size:403 final size:404
Alignment explanation
Indices: 43047--43927 Score: 1290
Period size: 403 Copynumber: 2.2 Consensus size: 404
43037 AAACCTTGTC
* * ** * **
43047 GCGGTGATGGAGACCCTGCGCGGTCCAGGTGATCCGTGGCAAGGTCCCCGGTCGCCGTATGCTGC
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGG-CCCCGGTCGCTGCGTGC-G-
* * * *
43112 CGATCGCATGGCACGCGTGTGTGGGGCACAAGGGGCGTGGTCGTGCCGTAGGGTTAAGCTTCCAC
63 CGATCGCATGGCACGCGTGTGTCGGGCACAAGGGGCGTGGTCGTGCCGGAAGGTCAAGCTTCCAC
* *
43177 CTGCGCTGATTCTGCCAAGTTCCCGAATTCGAGTTGGTAGTCCCGGTTGTGGCGTGGGCAGAAGC
128 CTGCGCTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTGTGGCGTGGGCAGAAGC
*
43242 TGCAGGTGGGGCTTGGCCTGGCCATGCCCCGTGAGCAGGGGCAGTCTCGCGGCCCTTGCTTCGGC
193 TGCAGGTGGGGCTTGGCCTGGCCATGCCCCGTGAGCAGGGGCAGTCTCGCGGCCCTTGCATCGGC
* * * * *
43307 AACGGTGGGCTCGTCCCGCCGGTTGTCTGTCGGGGATTGTGCTCGATGCGCCTGGCATTGATCGC
258 AACGGTGGGCACGTCCCGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGATCGC
* * *
43372 GCCCCGGCAGAGTGTCCCTCTCGGTTAAGATCCAGGTCGCGCGTGCCTTGCGATCGTGGTTTTCG
323 GCCCCGGCA-AGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCG
*
43437 GTGGCCGGATGCCCAGCT
387 GTGACCGGATGCCCAGCT
* * * *
43455 GCGGTGACGG-GACCCTTCGCGGTCCAAGTGATCCGTGGTGAGGCCGTCGGTCTCTGCGTGCGCG
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCC-CCGGTCGCTGCGTGCGCG
** * *
43519 ATCGTTTGGCACGCGTGTG-CGGGTA-ACGGGGCGTGGTCGTGCCGGAAGG-CAAGGC-TCGCAC
65 ATCGCATGGCACGCGTGTGTCGGGCACAAGGGGCGTGGTCGTGCCGGAAGGTCAA-GCTTC-CAC
* *
43580 CTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTGTGGCGTGGGCAGAGGC
128 CTGCGCTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTGTGGCGTGGGCAGAAGC
*
43645 TGCAGGTGAGGGCTTGGCCTGGCCATGCCCC-TCGAGCAGGGGCAGTCTCGTGGCCCTTGCATCG
193 TGCAGGTG-GGGCTTGGCCTGGCCATGCCCCGT-GAGCAGGGGCAGTCTCGCGGCCCTTGCATCG
* *
43709 GCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGTTC
256 GCAACGGTGGGCACGTCCCGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGATC
43774 GCGCCCCGGC-AGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTC
321 GCGCCCCGGCAAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTC
43838 GGTGACCGGATGCCCAGCT
386 GGTGACCGGATGCCCAGCT
*
43857 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCG
1 GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGG-CCCCGGTCGCTGCGTGCGCG
43922 ATCGCA
65 ATCGCA
43928 AGGCTCGCAC
Statistics
Matches: 424, Mismatches: 42, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
402 82 0.19
403 147 0.35
404 125 0.29
405 19 0.04
406 3 0.01
407 39 0.09
408 9 0.02
ACGTcount: A:0.12, C:0.29, G:0.37, T:0.22
Consensus pattern (404 bp):
GCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCCCCGGTCGCTGCGTGCGCGA
TCGCATGGCACGCGTGTGTCGGGCACAAGGGGCGTGGTCGTGCCGGAAGGTCAAGCTTCCACCTG
CGCTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTGTGGCGTGGGCAGAAGCTGC
AGGTGGGGCTTGGCCTGGCCATGCCCCGTGAGCAGGGGCAGTCTCGCGGCCCTTGCATCGGCAAC
GGTGGGCACGTCCCGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGATCGCGCC
CCGGCAAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTTCGGTGA
CCGGATGCCCAGCT
Found at i:44224 original size:358 final size:358
Alignment explanation
Indices: 43567--44283 Score: 1389
Period size: 358 Copynumber: 2.0 Consensus size: 358
43557 GTGCCGGAAG
*
43567 GCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTGTGG
1 GCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGG
*
43632 CGTGGGCAGAGGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTG
66 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTG
43697 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
131 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
43762 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
196 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
43827 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
261 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
43892 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
326 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
* *
43925 GCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGG
1 GCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGG
*
43990 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGGGCAGGGGCAGTCTCGTG
66 CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTG
44055 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
131 GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
44120 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
196 CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
44185 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
261 TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
44250 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
326 GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
44283 G
1 G
44284 TTTGGCACGC
Statistics
Matches: 354, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
358 354 1.00
ACGTcount: A:0.13, C:0.30, G:0.35, T:0.21
Consensus pattern (358 bp):
GCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGG
CGTGGGCAGAAGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCGTG
GCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGC
CTGGCATGGTTCGCGCCCCGGCAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGA
TCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCC
GTGGTGAGGCCCCCGGTCGCTACGTGCGCGATC
Found at i:44476 original size:761 final size:764
Alignment explanation
Indices: 43174--44581 Score: 2328
Period size: 761 Copynumber: 1.8 Consensus size: 764
43164 GTTAAGCTTC
*
43174 CACCTGCGCTGATTCTGCCAAGTTCCCGAATTCGAGTTGGTAGTCCCGGTTGTGGCGTGGGCAGA
1 CACCTGCGCTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGA
*
43239 AGCTGCAGGTGGGGCTTGGCCTGGCCATGCCCCGTGAGCAGGGGCAGTCTCGCGGCCCTTGCTTC
66 AGCTGCAGGTGGGGCTTGGCCTGGCCATGCCCCGTGAGCAGGGGCAGTCTCGCGGCCCTTGCATC
* * * * *
43304 GGCAACGGTGGGCTCGTCCCGCCGGTTGTCTGTCGGGGATTGTGCTCGATGCGCCTGGCATTGAT
131 GGCAACGGTGGGCACGTCCCGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGAT
* * *
43369 CGCGCCCCGGCAGAGTGTCCCTCTCGGTTAAGATCCAGGTCGCGCGTGCCTTGCGATCGTGGTTT
196 CGCGCCCCGGCA-AGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTT
* *
43434 TCGGTGGCCGGATGCCCAGCTGCGGTGACGGGACCCTTCGCGGTCCAAGTGATCCGTGGTGAGGC
260 TCGGTGACCGGATGCCCAGCTGCGGTGACGGGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGC
** * *
43499 CGTCGGTCTCTGCGTGCGCGATCGTTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGG
325 CCCCGGTCGCTACGTGCGCGATCGTTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGG
*
43564 AAGGCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTCGGTAGTCCCGGTTG
390 AAGGCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTG
*
43629 TGGCGTGGGCAGAGGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTC
455 TGGCGTGGGCAGAGGCTGCAGGTGAGGGCGTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTC
*
43694 GTGGCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATG
520 GCGGCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATG
* * *
43759 -C-G-CCTGGCATGGTTCGCGCCCCGGC-AGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGC
585 TCTGTCCTCGCACGGGTCGCGCCCCGGCAAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGC
43820 CTTGCGATCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAA
650 CTTGCGATCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAA
43885 GTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCGATCGCAAGGCTCG
715 GTGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCGATCGCAAGGCTCG
* *
43935 CACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGTCCCGGTTGTGGCGTGGGCAGA
1 CACCTGCGCTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGA
* *
44000 AGCTGCAGGTGAGGGCTTGGCCTGGCCATGCCCC-TCGGGCAGGGGCAGTCTCGTGGCCCTTGCA
66 AGCTGCAGGTG-GGGCTTGGCCTGGCCATGCCCCGT-GAGCAGGGGCAGTCTCGCGGCCCTTGCA
*
44064 TCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGG
129 TCGGCAACGGTGGGCACGTCCCGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGG
*
44129 TTCGCGCCCCGGC-AGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTT
194 ATCGCGCCCCGGCAAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTT
*
44193 TTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAGTGATCCGTGGTGAG
259 TTCGGTGACCGGATGCCCAGCTGCGGTGACGG-GACCCTACGCGGTCCAAGTGATCCGTGGTGAG
*
44258 GCCCCCGGTCGCTACGTGCGCGATCGTTTGGCACGCGTGTGTGGGTAACGGGGCGTGGTCGTGCC
323 GCCCCCGGTCGCTACGTGCGCGATCGTTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCC
* *
44323 GGAAGGCAAGGCTCGCACCTGCGGTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTTGT-CCGGT
388 GGAAGGCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGT
*
44387 TGTGGCGCT-GGCAGATGCTGCAGGTGAGGGCGTGGCCTGGCCATTGCCCCTCGAGCAGGGGCAG
453 TGTGGCG-TGGGCAGAGGCTGCAGGTGAGGGCGTGGCCTGGCCA-TGCCCCTCGAGCAGGGGCAG
* * *
44451 TCTCGCGGCCCTTGCATCGGCAACGGTGGGCTCGTCTTGCCGGTTGCCTGTCGGGGATTGTGCTC
516 TCTCGCGGCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTC
* *
44516 GATGTTCCTGTTCCTCGCACGGGTCGCGCCCCGGCAGAGTGTCCCTCTCGATTGAAATCCAGGTC
581 CATG-T-CTG-TCCTCGCACGGGTCGCGCCCCGGCA-AGTGTCCCTCTCGATTAAAATCCAGGTC
44581 G
642 G
44582 TGCCCAGCTG
Statistics
Matches: 596, Mismatches: 38, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
760 122 0.20
761 306 0.51
762 118 0.20
764 1 0.00
765 1 0.00
767 20 0.03
769 28 0.05
ACGTcount: A:0.12, C:0.29, G:0.36, T:0.22
Consensus pattern (764 bp):
CACCTGCGCTGATTCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGTGGCGTGGGCAGA
AGCTGCAGGTGGGGCTTGGCCTGGCCATGCCCCGTGAGCAGGGGCAGTCTCGCGGCCCTTGCATC
GGCAACGGTGGGCACGTCCCGCCGGTTGCCTGTCGGGGATTGCGCTCCATGCGCCTGGCATGGAT
CGCGCCCCGGCAAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCCTTGCGATCGTGGTTTT
CGGTGACCGGATGCCCAGCTGCGGTGACGGGACCCTACGCGGTCCAAGTGATCCGTGGTGAGGCC
CCCGGTCGCTACGTGCGCGATCGTTTGGCACGCGTGTGCGGGTAACGGGGCGTGGTCGTGCCGGA
AGGCAAGGCTCGCACCTGCGGTGATGCTGCCAAGTTCCCGAATTCGAGTAGGTAGTCCCGGTTGT
GGCGTGGGCAGAGGCTGCAGGTGAGGGCGTGGCCTGGCCATGCCCCTCGAGCAGGGGCAGTCTCG
CGGCCCTTGCATCGGCAACGGTGGGCACGTCCTGCCGGTTGCCTGTCGGGGATTGCGCTCCATGT
CTGTCCTCGCACGGGTCGCGCCCCGGCAAGTGTCCCTCTCGATTAAAATCCAGGTCGCGCGAGCC
TTGCGATCGTGGTTTTCGGTGACCGGATGCCCAGCTGCGGTGATGGAGACCCTACGCGGTCCAAG
TGATCCGTGGTGAGGCCCCCGGTCGCTACGTGCGCGATCGCAAGGCTCG
Done.