Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1311
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43312
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Found at i:6495 original size:947 final size:946
Alignment explanation
Indices: 4332--9688 Score: 6618
Period size: 947 Copynumber: 5.7 Consensus size: 946
4322 AGGAATCAAA
* * * *
4332 GTTTGTCCCATTTGAGGTACGAACTTAAACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
1 GTTTGTCTCATTTGAAGCACGAACTTAGACTTTA-AAAAATATGGTGGGAAAAAAGCCTTTCTTG
* * ** ** * *
4396 TGAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGCCGAA-TCTAG
65 CGAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTCTAATTC-AG
*
4460 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
129 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *** * *
4525 CAAAAATGGTGGAA-AAAAGTTTTTCTAATGACCCCAAAGCATCAATTTCATGTATCCTAATGAA
194 CAGAAACGGTGGAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATATATCCTAATGAA
* * * * * * *
4589 GGGAATGTGTTTTGGCTCCGATTCTTGTAAAGAATGGAGTTTGATGCAAGAATCGATGCTTGTCT
259 GGGAATGTGTTTTGGCTCC-AATCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCT
*
4654 TATTTAAGGGATGAACTTTGATTTAAAGG-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGCA
323 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
4718 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAG
388 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAG
* * * * *
4783 AAGATCATTACTAGAATCCATGTTTGTTGCTTTTGCTTTTGATGCATGAACTTAGGCTTTGCATA
453 AAGATCATTACTAGAATCCATGTTTG-T-C---T-CTTTTGAGGCACGAACTTAGACTTTACAAA
* * * * * * ** *
4848 AAATGGTGGGAAAAAAACCTTTTTTGTGAAACGAAAGCATCGATATAACGTATTGTAAAGAGAAG
512 AAATGGTGGGAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAA
4913 ACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
577 ACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * *
4978 CTTAGGAGACATG-CTTTGATTCTAACAAAAATGGTGGAAGGAAAAGTTTTTCTTGCG-ACACCA
642 TTTA-GAGA-AAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAAC-CCA
*
5041 ATGCATCAATTTCATGTAACCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGGAAAGAACT
704 AAGCATCAATTTCATGTAACCTAATGAAGGGAATGTGTTTTGGC-TCACAATCTTGGAAAGAACT
* * *
5106 GATACCGTTACGAGAATCGATGCTTGTTTTCTTTAAGGGATGAACTTTGATTTAAAGGAAAATAG
768 GACACTGTTACGAGAATCGATGCTTGTTTTATTTAA-GGATGAACTTTGATTTAAAGGAAAATAG
* * *
5171 GGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGT
832 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
5236 GTTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATCCAT
897 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
5286 GTTTCTCTTATTT-AAGGCACGAACTTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTTTTG
1 GTTTGTCTCATTTGAA-GCACGAACTTAGACTTTAAAAAATATGGTGGGAAAAAAGCCTTTCTTG
* * * * *
5350 CGAAATGAAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTA-TCTT
65 CGAAACG-AAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTCTAATTC-A
* * * *
5414 GAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTTTA
128 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* *
5479 TCAGAAACGGTGGAAGAAAATGTTTTTCTTGCGACCCCAAAGCATCAATTTCATATA---T-ATA
193 TCAGAAACGGTGGAAGAAAA-GTTTTTCTTGCGACACCAAAGCATCAATTTCATATATCCTAATG
* * * *
5540 AAGGGAATGTGTTTTGGCTTTACAATCTTGAAAAGAACT-GAGGCAGTTATGAGAATTGATGCTT
257 AAGGGAATGTGTTTTGGC--TCCAATCTTGAAAAGAA-TGGAGGTAGTTACGAGAATCGATGCTT
* * *
5604 GTCTTATTTAGGGGATGAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGCAA
319 GTCTTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * * * * *
5668 AAGAAAATCATCAATTTCATTTATGCTAAT-AGGGGGAATG-CTTCATAGTGCCTAATCACAAAA
383 AAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAACCACAAAA
* * * * ** * * * *
5731 TGAATGAAGATTATTACCAGAATCTAAATTTGTCTCATATGAGGCACGTACTGAAGACTTTACAA
447 TGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACT-TAGACTTTACAA
* * * *
5796 AAAATGGTTGGAAAAAAGCCTTTCTTATGAAATGAAAGTATCAATATGATGTATCCTAAAGAGAA
511 AAAATGGTGGGAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAA
* * *
5861 AACTATGTTTATGGTGCCTTATCCTGAAAAGACTAGGGATTAGTATGAGT-TTCATGTTTGTCTT
576 AACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * *
5925 ATTTGAGAGAAAGAGTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGAACCCAA
641 ATTT-AGAGAAAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAA
* * * * *
5990 AGAATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTC-CGATTCTCGTAAAGAA-TG
705 AGCATCAATTTCATGTAACCTAATGAAGGGAATGTGTTTTGGCTCAC-AATCTTGGAAAGAACT-
* * * * *
6053 GAGATTGTTACGAGAAAT-GATGCTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATA
768 GACACTGTTACGAG-AATCGATGCTTGTTTTATTTAAGG-ATGAACTTTGATTTAAAGGAAAATA
* * *
6117 GGGCAAAGAAAAGATTCCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATG
831 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * * *
6182 TGTTTATCGTGCCTAA-C-CTAAATTGAAAGAAGATCGTTACTAAAATTCAT
896 TGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
6232 GTTTGTCTCTTTTGAAGCAGGAACTTAGATTTTACAAAAA-ATGGTGGG-AGAAAGCCTTTCTTG
1 GTTTGTCTCATTTGAAGCACGAACTTAGACTTTA-AAAAATATGGTGGGAAAAAAGCCTTTCTTG
* * * * * * *
6295 GGAAATGAGAGCACCAATATGGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATTCAGA
65 CGAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTCTAATTCAGA
* * *
6360 AAATAATGGGGATTAGTATGAGTATCCATGTTTGTCTTA-TTAAGAGACAAACTTTGATTCTAAC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* ** *
6424 AGAAACGGTGGAAGGAAAATTTTTTCTTGCGACACCAAAGCATCAATTTTGTATATCCTAATGAT
195 AGAAACGGTGGAA-GAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATATATCCTAATGAA
* * * * * * * *
6489 GGGAATGTGTTTTGTCTCCAAT-TCTCATAAAGAATGGAGATTGTTATGAGAAACGATGCTTTTG
259 GGGAATGTGTTTTGGCTCCAATCT-TGA-AAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTC
* * ** * *
6553 TTATTTAAAGGTTGAACTTTGATTTAAAGGAAAATTA-GGCGGAGAAAAGGTTTCCAAGCAAAAG
322 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * *
6617 AAATTCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGAAAT-AA
386 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAA
* * * *
6680 ATGAAGATCGTTACTAGAATCCATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTATAAAAAA
451 A-GAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAAA
* * *
6745 TGGTGGGAAAAAAGCCTTTCTTACGAAATGAAAGCATCAATATGATGTATCCA-AATGAGAAGAA
515 TGGTGGGAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTAT-CATAAAGAGAA-AA
* * ** * *
6809 -AATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTGTTCATGTTAGTCTTAT
578 CTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* *
6873 TTAAGAGAAA-ACTTTGATTCTATTAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAG
643 TT-AGAGAAAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAAAG
* * ** * * * * *
6937 CATTAATTTCCTGTAACCTAATGAAAAGATTGTGTTTTGGCTC-CGATTCTCGTG--AGGAGTGG
707 CATCAATTTCATGTAACCTAATGAAGGGAATGTGTTTTGGCTCAC-AATCTTG-GAAAGAACT-G
* * * * * *
6999 AGATTGTTACGAGAATTGATGCTTGTTTTATTTAGGGAATTAACTTTGATTTAAAGGAAAAAAGG
769 ACACTGTTACGAGAATCGATGCTTGTTTTATTTAAGG-ATGAACTTTGATTTAAAGGAAAATAGG
* * * * * *
7064 TCAAAGAAAAGATTTCCGTGCAAAACAAAATCATCAATATCAATAATCCTAATGAGGAGAATGCG
833 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
7129 TTTATAGTGCC-AAGTGACAAAATGAATGAAGATCATTACTAGAATCCAC
898 TTTATAGTGCCTAA-TCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
7178 GTTTGTCTCATTTGAGGCACGAACTTAGACCTTAAAAAATTTGGTGGGAAAAATGCCTTTCTTGC
1 GTTTGTCTCATTTGAAGCACGAACTTAGACTTTAAAAAATATGGTGGGAAAAAAGCCTTTCTTGC
* * * * * * *
7243 TAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTCATGTTGTGTTATCCTGAA
66 GAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTCTAATTCAGAA
* *
7308 AAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTATCA
131 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
7373 -AAAAGTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATGAA
196 GAAACG-GTGGAA-GAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATATATCCTAATGAA
* * * * * * * *
7437 GGAAATGTGTTTTGGCTCCAATTCTTGTAAAGAATAGAGATTGTTACGAGAAACAATGCTTATCT
259 GGGAATGTGTTTTGGCTCCAA-TCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCT
* * *
7502 TATTTAGGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAATGAA
323 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
*
7567 AATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAACCACAAAATGAAAG
388 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAG
**
7632 AAGATCATTACTAGAATCCATGTTTGTCAT-TTTTGAAACACGAACTTAGACTTTACAAAAAATG
453 AAGATCATTACTAGAATCCATGTTTGTC-TCTTTTGAGGCACGAACTTAGACTTTACAAAAAATG
* *** *
7696 GTAGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCATAAAGAGAAGACTAT
517 GTGGGAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTAT
7761 GTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
582 GTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT-A
* * *** *
7826 GAGACAA-ACTTTGATTCTATCAAAAACGGTGGAA-AAAAAGTTTTTCTAATGACCCCAAAGCAT
646 GAGA-AAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGCAT
* * * *
7889 AAATTTCATGTAACCTAAAGAAGGAAATGTGTTTTGGGTTCACAATCTTGGAAAGAACTGACACA
710 CAATTTCATGTAACCTAATGAAGGGAATGTGTTTT-GGCTCACAATCTTGGAAAGAACTGACAC-
* * *
7954 T-TTACGAGAATCGGTGTTTGTCTTATTTAAGAGATGAACTTTGATTTAAAGGAAAATAGGGCAA
773 TGTTACGAGAATCGATGCTTGTTTTATTTAAG-GATGAACTTTGATTTAAAGGAAAATAGGGCAA
*
8018 AGAAAAGATTTCCATGCAAAAGAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
837 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
** * *
8083 TAGTGCCTAATCACAAAATGAATGAAGATTGTTACTAGAATCAAC
902 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
8128 GTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAAA-ATGGTGGGAAAAAAGCTTTTCTTG
1 GTTTGTCTCATTTGAAGCACGAACTTAGACTTTA-AAAAATATGGTGGGAAAAAAGCCTTTCTTG
* * ** ** * *
8192 TGAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGTCGAATCCAGA
65 CGAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTCTAATTCAGA
* * *
8257 AAAG-ATGGGGATTAGCATGAATATTCATGTTTGTCTTATTTAAGAGATAAACTTT-ATTCTATC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *** *
8320 AAAAACGGTGGAA-AAAAGTTTTTCTAATGAC-CACAAAGCATCAATTTCATGTATCCTAATGAA
195 AGAAACGGTGGAAGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATTTCATATATCCTAATGAA
* * * * * * *
8383 GGGAATGTGTTTTAGCTCCAATTCTTGTAAATAATGGAGTTTGATACAAGAATCGATGCTTGTCT
259 GGGAATGTGTTTTGGCTCCAA-TCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCT
8448 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
323 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
*
8513 AATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAG
388 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAG
* *
8578 AAGATCATTACTAGAATCCATGTTTGT-TGCTTTTGATGCACGAACTTAGACTTTACATAAAATG
453 AAGATCATTACTAGAATCCATGTTTGTCT-CTTTTGAGGCACGAACTTAGACTTTACAAAAAATG
* * * ** ** *
8642 GTGGGGAAAAAAGCTTTTCTTGTGAAACGAAAGCATCAATATAACATATTGTAAAGAGAAGACTA
517 GT-GGGAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTA
* *
8707 TGTTTATGGTGCCTTATCCTAAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTA
581 TGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* ** *
8772 GGAGATAGGTTTTGATTCTAACAAAAATGGTGGAAGGAAAAG-TTTTCTTGCG-ACACCAAAGCA
646 -GAGAAAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAAC-CCAAAGCA
* *
8835 TCAATTTAATGTAACCTAATGAAGGGAATGTGTATTGGCTTCACAATCTTGGAAAGAACTGACAC
709 TCAATTTCATGTAACCTAATGAAGGGAATGTGTTTTGGC-TCACAATCTTGGAAAGAACTGACAC
* * *
8900 AGTTACAAGAATCGATGCTTGTTTTCTTTAAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAA
773 TGTTACGAGAATCGATGCTTGTTTTATTT-AAGGATGAACTTTGATTTAAAGGAAAATAGGGCAA
* *
8965 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTA
837 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
*
9030 TAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATCCAT
902 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
9075 GTTTTTCTCATTT-AAGGCACGAGCTTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTG
1 GTTTGTCTCATTTGAA-GCACGAACTTAGACTTTAAAAAATATGGTGGGAAAAAAGCCTTTCTTG
* * * * * *
9139 CGAAACGAAAAGCAACAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTATGCTG
65 CGAAACG-AAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTCTAATTCAG
9204 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
129 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
9269 TAGAAACGGTGGAAGGAAATGTTTTTCTTGCGACACCAAAGCATCAATTTCATATA---T-ATAA
194 CAGAAACGGTGGAA-GAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATATATCCTAATGA
* * *
9330 AGGGAATGTGTTTTGGCTTTACAATCTTGAAAAGAACT-GAGGTAGTTACGAGAATTGATGGTTG
258 AGGGAATGTGTTTTGGC--TCCAATCTTGAAAAGAA-TGGAGGTAGTTACGAGAATCGATGCTTG
* * * * *
9394 TCTTATTTAGGGGATAAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGAAAA
320 TCTTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
9458 AGAAAATCATCAATTTCATTTATGCTAATGAGGGGAATGT-TTCATAGTGCCTAATCACAAAATG
384 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATG
* * * ** * * *
9522 AATGAAGATTATTACTAGAATCCAGGTTTGTCTGATATGAGGCATGGACTTAAGACTTTACAAAA
449 AAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTT-AGACTTTACAAAA
** *
9587 AATGGTTAG-AAAAAGCCTTTCTTATGAAACGAAAGTATCAATATGATGTATCATAAAGAGAAAA
513 AATGGTGGGAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAA
* *
9651 CTATGTTTATGGTGCCTTATCCTGAAAAGACTGGGGAT
578 CTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGAT
9689 GAAAAAAAGA
Statistics
Matches: 3796, Mismatches: 515, Indels: 191
0.84 0.11 0.04
Matches are distributed among these distances:
943 67 0.02
944 97 0.03
945 369 0.10
946 599 0.16
947 785 0.21
948 499 0.13
949 592 0.16
950 330 0.09
951 14 0.00
952 34 0.01
953 28 0.01
954 156 0.04
955 190 0.05
956 4 0.00
957 32 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (946 bp):
GTTTGTCTCATTTGAAGCACGAACTTAGACTTTAAAAAATATGGTGGGAAAAAAGCCTTTCTTGC
GAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTCTAATTCAGAA
AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
GAAACGGTGGAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATATATCCTAATGAAGG
GAATGTGTTTTGGCTCCAATCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCTTAT
TTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAG
ATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGG
GAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTATGTTT
ATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAGAA
AGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGCATCAATTT
CATGTAACCTAATGAAGGGAATGTGTTTTGGCTCACAATCTTGGAAAGAACTGACACTGTTACGA
GAATCGATGCTTGTTTTATTTAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCAT
Found at i:7571 original size:475 final size:474
Alignment explanation
Indices: 4332--9688 Score: 6520
Period size: 475 Copynumber: 11.3 Consensus size: 474
4322 AGGAATCAAA
* * *
4332 GTTTGTCCCATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG-
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* ** **
4396 TGAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGCCGAAT-CTAG
66 TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-G
*
4460 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
130 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
*** *
4525 CAAAAATGGTGGAA--AAAAGTTTTTCTAATGACCCCAAAGCATCAATTTCATGTATCCTAATGA
195 CAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGA
* * * * *
4588 AGGGAATGTGTTTTGGCTCCGATTCTTGTAAAGAATGGAGTTTGATGCAAGAATCGATGCTTGTC
259 AGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAAT-GAGATTGTTACGAGAATCGATGCTTGTC
*
4653 TTATTTAAGGGATGAACTTTGATTTAAAGG-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGC
323 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
4717 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAA
388 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
4782 GAAGATCATTACTAGAATCCAT
453 GAAGATCATTACTAGAATCCAT
* * * * * * *
4804 GTTTGTTGCTTTTGCTTTTGATGCATGAACTTAGGCTTTGCATAAAATGGTGGGAAAAAAACCTT
1 GTTTG-T-C---T-CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTT
* * * * ** *
4869 TTTTG-TGAAACGAAAGCATCGATATAACGTATTGTAAAGAGAAGACTATGTTTATGGTGCCTTA
60 TCTTGCTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTA
* * * **
4933 TCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGACATGCTTTGAT
125 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
4998 TCTAACAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAATGCATCAATTTCATGTAACCT
190 TCTATCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCT
* * **
5063 AATGAAGGGAATGTGTTTTGGCTTCACAA-TCTTGGAAAGAACTGATACCGTTACGAGAATCGAT
254 AATGAAGGGAATGTGTTTTGGC-TC-CAATTCTTGTAAAGAA-TGAGATTGTTACGAGAATCGAT
* * * *
5127 GCTTGTTTTCTTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCACG
316 GCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
*
5192 CAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
381 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
*
5257 AATGAATGATGATCATTACTAGAATCCAT
446 AATGAATGAAGATCATTACTAGAATCCAT
* * * * *
5286 GTTTCTCTTATTTAAGGCACGAACTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTTTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * * ** *
5350 C-GAAATGAAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTATCTT
65 CTGAAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT
* * * *
5414 GAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTTTA
129 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
5479 TCAGAAACGGTGGAA-GAAAATGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TAT-AT-AT
194 TCA-AAAAGGTGGAAGGAAAA-GTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAT
* * * *** * *
5539 AAAGGGAATGTGTTTTGGCTTTACAA-TCTTGAAAAGAACTGAGGCAGTTATGAGAATTGATGCT
257 GAAGGGAATGTGTTTTGGC--TCCAATTCTTGTAAAGAA-TGAGATTGTTACGAGAATCGATGCT
* * *
5603 TGTCTTATTTAGGGGATGAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGCA
319 TGTCTTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * * *
5667 AAAGAAAATCATCAATTTCATTTATGCTAAT-AGGGGGAATG-CTTCATAGTGCCTAATCACAAA
383 AAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * *
5730 ATGAATGAAGATTATTACCAGAATCTAA
447 ATGAATGAAGATCATTACTAGAATCCAT
* * * * *
5758 ATTTGTCTCATATGAGGCACGTACTGAAGACTTTACAAAAAATGGTTGGAAAAAAGCCTTTCTT-
1 GTTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * *
5822 ATGAAATGAAAGTATCAATATGATGTATCCTAAAGAGAAAACTATGTTTATGGTGCCTTATCCTG
65 CTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
* * * *
5887 AAAAGACTAGGGATTAGTATGAGT-TTCATGTTTGTCTTATTTGAGAGA-AAGAGTTTGATTCTA
130 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA-ACTTTGATTCTA
* *
5950 TCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGA-ACCCAAAGAATCAATTTCATGTATCCTAAT
194 TCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACA-CCAAAGCATCAATTTCATGTATCCTAAT
* *
6014 GAAGGGAATGTGTTTTGGCTCCGATTCTCGTAAAGAATGGAGATTGTTACGAGAAAT-GATGCTT
257 GAAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAAT-GAGATTGTTACGAG-AATCGATGCTT
* * * * *
6078 ATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATACAAA
320 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * *
6143 AGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATCGTGCCTAA-C-CTAAATT
385 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAAT
* * * *
6206 GAAAGAAGATCGTTACTAAAATTCAT
449 GAATGAAGATCATTACTAGAATCCAT
* * * * *
6232 GTTTGTCTCTTTTGAAGCAGGAACTTAGATTTTACAAAAAATGGTGGG-AGAAAGCCTTTCTTG-
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* * * * * * * * *
6295 GGAAATGAGAGCACCAATATGGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATTCAGA
66 TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
* * *
6360 AAATAATGGGGATTAGTATGAGTATCCATGTTTGTCTTA-TTAAGAGACAAACTTTGATTCTAAC
131 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * ** * *
6424 AGAAACGGTGGAAGGAAAATTTTTTCTTGCGACACCAAAGCATCAATTTTGTATATCCTAATGAT
196 A-AAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAA
* ** * * * *
6489 GGGAATGTGTTTTGTCTCCAATTCTCATAAAGAATGGAGATTGTTATGAGAAACGATGCTTTTGT
260 GGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAAT-GAGATTGTTACGAGAATCGATGCTTGTCT
* * ** * *
6554 TATTTAAAGGTTGAACTTTGATTTAAAGGAAAATTA-GGCGGAGAAAAGGTTTCCAAGCAAAAGA
324 TATTTAAGGGATGAACTTTGATTTAAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * *
6618 AATTCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGAAATAAAT
388 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
*
6682 GAAGATCGTTACTAGAATCCAT
453 GAAGATCATTACTAGAATCCAT
* * * * *
6704 GTTTATCTCTTTTGAGGCATGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTAC
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* * * *
6769 -GAAATGAAAGCATCAATATGATGTATCC-AAATGAGAAGAAAATGTTTATGGTGCCTAATCCGG
66 TGAAACGAAAGCATCAATATGATGTATCCTAAA-GAGAAGACAATGTTTATGGTGCCTTATCCTG
* *
6832 AAAAGAATGGGGATTAGTATGAGTGTTCATGTTAGTCTTATTTAAGAGA-AAACTTTGATTCTAT
130 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
6896 TAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATTAATTTCCTGTAACCTAATGA
195 CAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGA
** * * * * * * * *
6961 AAAGATTGTGTTTTGGCTCCGATTCTCGTGAGGAGTGGAGATTGTTACGAGAATTGATGCTTGTT
259 AGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAAT-GAGATTGTTACGAGAATCGATGCTTGTC
* * * * *
7026 TTATTT-AGGGAATTAACTTTGATTTAAAGGAAAAAAGGTCAAAGAAAAGATTTCCGTGCAAAAC
323 TTATTTAAGGG-ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
7090 AAAATCATCAATATCAATAATCCTAATGAGGAGAATGCGTTTATAGTGCC-AAGTGACAAAATGA
387 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA-TCACAAAATGA
*
7154 ATGAAGATCATTACTAGAATCCAC
451 ATGAAGATCATTACTAGAATCCAT
* * *
7178 GTTTGTCTCATTTGAGGCACGAACTTAGACCTTA-AAAAATTTGGTGGGAAAAATGCCTTTCTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * * **
7242 CT-AAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTCATGTTGTGTTATCCTG
65 CTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
* *
7306 AAAAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTAT
130 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
7371 CAAAAAGTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATGA
195 CAAAAAG-GTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGA
* * * *
7436 AGGAAATGTGTTTTGGCTCCAATTCTTGTAAAGAATAGAGATTGTTACGAGAAACAATGCTTATC
259 AGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAAT-GAGATTGTTACGAGAATCGATGCTTGTC
* * *
7501 TTATTTAGGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAATGA
323 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
7566 AAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAACCACAAAATGAAA
388 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
7631 GAAGATCATTACTAGAATCCAT
453 GAAGATCATTACTAGAATCCAT
* ** *
7653 GTTTGTCAT-TTTTGAAACACGAACTTAGACTTTACAAAAAATGGTAGGAAAAAAGCCTTTCTTG
1 GTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * *
7717 C-AAAACGAAAGCATCAATATGATGTATCATAAAGAGAAGACTATGTTTATGGTGCCTTATCCTA
65 CTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
7781 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
130 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *** * * * *
7846 CAAAAACGGTGGAA-AAAAAGTTTTTCTAATGACCCCAAAGCATAAATTTCATGTAACCTAAAGA
195 CAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGA
* * * * * * *
7910 AGGAAATGTGTTTTGGGTTCACAA-TCTTGGAAAGAACTGACACAT-TTACGAGAATCGGTGTTT
259 AGGGAATGTGTTTT-GGCTC-CAATTCTTGTAAAGAA-TGAGA-TTGTTACGAGAATCGATGCTT
*
7973 GTCTTATTTAAGAGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
320 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
*
8038 AGAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
385 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
** * *
8103 AATGAAGATTGTTACTAGAATCAAC
450 AATGAAGATCATTACTAGAATCCAT
* * *
8128 GTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCTTTTCTTG-
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* ** * ** *
8192 TGAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGTCGAATCCAGA
66 TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
* * *
8257 AAAG-ATGGGGATTAGCATGAATATTCATGTTTGTCTTATTTAAGAGATAAACTTT-ATTCTATC
131 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
***
8320 AAAAACGGTGGAA--AAAAGTTTTTCTAATGAC-CACAAAGCATCAATTTCATGTATCCTAATGA
196 AAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATTTCATGTATCCTAATGA
* * * * *
8382 AGGGAATGTGTTTTAGCTCCAATTCTTGTAAATAATGGAGTTTGATACAAGAATCGATGCTTGTC
259 AGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAAT-GAGATTGTTACGAGAATCGATGCTTGTC
8447 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
323 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
8512 AAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAA
388 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
8577 GAAGATCATTACTAGAATCCAT
453 GAAGATCATTACTAGAATCCAT
* * * *
8599 GTTTGT-TGCTTTTGATGCACGAACTTAGACTTTACATAAAATGGTGGGGAAAAAAGCTTTTCTT
1 GTTTGTCT-CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGT-GGGAAAAAAGCCTTTCTT
* ** ** *
8663 G-TGAAACGAAAGCATCAATATAACATATTGTAAAGAGAAGACTATGTTTATGGTGCCTTATCCT
64 GCTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT
* * * * * ***
8727 AAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGATAGGTTTTGATTCTA
129 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
8792 ACAAAAATGGTGGAAGGAAAAG-TTTTCTTGCGACACCAAAGCATCAATTTAATGTAACCTAATG
194 TCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATG
* * * ** *
8856 AAGGGAATGTGTATTGGCTTCACAA-TCTTGGAAAGAACTGACACAGTTACAAGAATCGATGCTT
258 AAGGGAATGTGTTTTGGC-TC-CAATTCTTGTAAAGAA-TGAGATTGTTACGAGAATCGATGCTT
* * * *
8920 GTTTTCTTTAAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
320 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
*
8985 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATG
385 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
*
9050 AATGATGATCATTACTAGAATCCAT
450 AATGAAGATCATTACTAGAATCCAT
* * * *
9075 GTTTTTCTCATTTAAGGCACGAGCTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * ** *
9139 C-GAAACGAAAAGCAACAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTATGCT
65 CTGAAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT
9203 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
129 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * *
9268 TTAGAAACGGTGGAAGGAAATGTTTTTCTTGCGACACCAAAGCATCAATTTCA--TAT-AT-ATA
194 TCA-AAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATG
* * * * * *
9329 AAGGGAATGTGTTTTGGCTTTACAA-TCTTGAAAAGAACTGAGGTAGTTACGAGAATTGATGGTT
258 AAGGGAATGTGTTTTGGC--TCCAATTCTTGTAAAGAA-TGAGATTGTTACGAGAATCGATGCTT
* * * * *
9393 GTCTTATTTAGGGGATAAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGAAA
320 GTCTTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * * *
9457 AAGAAAATCATCAATTTCATTTATGCTAATGAGGGGAATGT-TTCATAGTGCCTAATCACAAAAT
384 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* *
9521 GAATGAAGATTATTACTAGAATCCAG
449 GAATGAAGATCATTACTAGAATCCAT
* * * * **
9547 GTTTGTCTGATATGAGGCATGGACTTAAGACTTTACAAAAAATGGTTAG-AAAAAGCCTTTCTT-
1 GTTTGTCTCATTTGAGGCACGAACTT-AGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * *
9610 ATGAAACGAAAGTATCAATATGATGTATCATAAAGAGAAAACTATGTTTATGGTGCCTTATCCTG
65 CTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
*
9675 AAAAGACTGGGGAT
130 AAAAGAATGGGGAT
9689 GAAAAAAAGA
Statistics
Matches: 4192, Mismatches: 594, Indels: 199
0.84 0.12 0.04
Matches are distributed among these distances:
470 11 0.00
471 350 0.08
472 741 0.18
473 763 0.18
474 490 0.12
475 843 0.20
476 398 0.09
477 178 0.04
478 171 0.04
479 2 0.00
480 61 0.01
481 63 0.02
482 121 0.03
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (474 bp):
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
AAAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAG
GGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGAGATTGTTACGAGAATCGATGCTTGTCTTA
TTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCAT
Found at i:7864 original size:158 final size:154
Alignment explanation
Indices: 4362--9264 Score: 463
Period size: 158 Copynumber: 31.0 Consensus size: 154
4352 GAACTTAAAC
* ** * *
4362 TTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGTGAAACGAAAGCATCAATGTGATGTATCCTA
1 TTTAC-AAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTA
** * * *
4427 TTGAGAAGACAATGTTTATGGTGCCGAAT-CTAGAAAAGAATGGGGATTAGTATGAGTATTCATG
64 AAGAGAAGACTATGTTTATGGTGCC-TATCCTA-AAAAGAATGGAGATTAGTATGAGTATTCATG
*
4491 TTTGTCTTATTTAAAAGACAAACTTTGA
127 TTTGTCTTATTTAAGAGACAAACTTTGA
** ** * *
4519 TTCTATCAAAAATGGTGG-AAAAAAGTTTTTCTAATG--ACCCCAAAGCATCAATTTCATGTATC
1 TT-TA-CAAAAA-GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATC
* * * * * * ** *
4581 CTAATGA-AGGGAATGTGTTT-TGGCT-CCGATTCTTGTAAAGAATGGAG-TTTG-ATGCAAG-A
61 CTAAAGAGA-AGACTATGTTTATGG-TGCCTA-TCCTAAAAAGAATGGAGATTAGTATG--AGTA
* * * **
4640 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
121 TTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
4675 TTTAAAGGAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAA-GCAAATCATCAATATCATTTAT
1 TTTACA--AAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTAT
* * * * * * * * * * *
4737 CCTAATGAGGAGAATGTGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGAAT
60 CCTAAAGAGAAGACTATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGTAT
* * ** * *
4800 CCATGTTTGTTGCTTTTGCTTTTGATG-CATGAACTTAGGC
122 TCATGTTTG-T-CTTAT--TTAAGA-GACA--AACTT-TGA
* * ** * * * **
4840 TTTGCATAAAATGGTGGGAAAAAAA-CCTTTTTTGTGAAACGAAAGCATCGATATAACGTATTGT
1 TTTACA-AAAA-GGT-GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
*
4904 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
63 AAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATG
* * **
4969 TTTGTCTTACTTAGGAGACATGCTTTGA
127 TTTGTCTTATTTAAGAGACAAACTTTGA
* ** * * * * * *
4997 TTCTAACAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAATGCATCAATTTCATGTAACC
1 TT-T-ACAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * * ** * ** * *
5062 TAATGA-AGGGAATGTGTTT-TGGCTTCACAATCTTGGAAAGAACT-GATA-CCGTTACGAG-AA
62 TAAAGAGA-AGACTATGTTTATGG-TGC-CTATCCTAAAAAGAA-TGGAGATTAG-TATGAGTAT
* * * * **
5122 TCGATGCTTGTTTTCTTTAAGGGATGAACTTTGA
122 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** ** * * *
5156 TTTAAAGGAAAATAGG-GCAAAGAAAAGATTTTCACGCAAAA-GAAAATCATCAATATTATTTAT
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTAT
* * * * * * * * *
5219 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAAT-GATGATCATTACT-AGAA
60 CCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGA-GATTAGTA-TGAGTA
* * * *
5281 TCCATGTTTCTCTTATTTAAG-GCACGAACTTAGA
121 TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * * * *
5315 CTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTTTTGCGAAATGAAAAGCACCAATA-CGATGTAT
1 -TTTACAAAAA---GGTGGAAAAAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATC-ATGTAT
* * * *
5378 CCTAAAGAGAAGACAATGTTTATGTTGTG-TTATCTTGAAAAGAAT-GAGGATTAGTATGAGTAT
60 CCTAAAGAGAAGACTATGTTTATG--GTGCCTATCCTAAAAAGAATGGA-GATTAGTATGAGTAT
* *
5441 TCATGTTTGTCTTAATTAAAAGACAAACTTTGA
122 TCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** * ** * * * *
5474 TTTTATCAGAAACGGTGGAAGAAAATGTTTTTCTTGCGACCCCAAAGCATCAATTTCATATAT-A
1 -TTTA-CA-AAAAGGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * ** * * * ** *
5538 TAAAG-G--GAATGTGTTT-TGGCTTTACAATCTTGAAAAGAACT-GAG-GCAGTTATGAGAATT
62 TAAAGAGAAGACTATGTTTATGG--TGCCTATCCTAAAAAGAA-TGGAGATTAG-TATGAGTATT
* * * * **
5597 GATGCTTGTCTTATTTAGGGGATGAACTTTGAA
123 CATGTTTGTCTTATTTAAGAGACAAACTTTG-A
* * * * * * * *
5630 TTTAGGGAAAATAGG-GCAAAGAAATG-ATTTCCATGCAAAA-GAAAATCATCAATTTCATTTAT
1 TTTA--CAAAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTAT
* ** * * * * * **
5692 GCTAATAG-GGGGA--ATGCTTCATAGTGCCTAATCAC-AAAATGAATGAAGATTATTACCAG-A
60 CCTAA-AGAGAAGACTATG-TTTATGGTGCCT-ATC-CTAAAAAGAATGGAGATTAGTATGAGTA
* ** * * * ** **
5752 ATCTAAATTTGTCTCATATGAG-GCACGTACTGAAGA
121 TTC-ATGTTTGTCTTATTTAAGAG-ACAAACT-TTGA
*** * * *
5788 CTTTACAAAAAATGGTTGG-AAAAAAGCCTTTCTTATGAAATGAAAGTATCAATATGATGTATCC
1 -TTTAC-AAAAA-GG-TGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * *
5852 TAAAGAGAAAACTATGTTTATGGTGCCTTATCCTGAAAAGACTAGG-GATTAGTATGAGT-TTCA
62 TAAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAAT-GGAGATTAGTATGAGTATTCA
* *
5915 TGTTTGTCTTATTTGAGAGA-AAGAGTTTGA
125 TGTTTGTCTTATTTAAGAGACAA-ACTTTGA
* * ** * * * * *
5945 TTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGAATCAATTTCATGTATCC
1 TT-TA-CAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * ** * * *
6010 TAATGA-AGGGAATGTGTTT-TGGCT-CCGATTCTCGTAAAGAATGGAGATT-GTTACGAGAAAT
62 TAAAGAGA-AGACTATGTTTATGG-TGCCTATCCT-AAAAAGAATGGAGATTAG-TATGAGTATT
* * * ** *
6071 GATGCTTATCTTATTTAAG-GTATGAACATTGA
123 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * * * * * * *
6103 TTTAAAGGAAAATAGG-GCAAAGAAAAG-ATTCCCATACAAAA-GAAAATCATCAATATCATTTA
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTT-TCTTGCAAAACG-AAAGCATCAATATCATGTA
* ** * * * * ** * * * **
6165 TCCTAATGAGGTGAATGTGTTTATCGTGCCTAACCTAAATTGAAAGAAGA-TCGTTACT-AAAAT
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCTATCCTAAAAAGAATGGAGATTAG-TA-TGAGTAT
* *
6228 TCATGTTTGTCTCT-TTTGAAGCAG--GAACTTAGA
122 TCATGTTTGTCT-TATTT-AAG-AGACAAACTTTGA
* * ** * * * **
6261 TTTTACAAAAAATGGTGG-GAGAAAGCCTTTCTTGGGAAATGAGAGCACCAATATGGTGTATCCT
1 -TTTAC-AAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
* * * *
6325 AAAGAGAAGACTATGTTTATGGTGCCTAATTC-AGAAAATAATGGGGATTAGTATGAGTATCCAT
63 AAAGAGAAGACTATGTTTATGGTGCCT-ATCCTA-AAAAGAATGGAGATTAGTATGAGTATTCAT
6389 GTTTGTCTTA-TTAAGAGACAAACTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
* * *** * * * * ** *
6417 TTCTAACAGAAACGGTGGAAGGAAAATTTTTTCTTGCGACACCAAAGCATCAATTTTGTATATCC
1 TT-T-ACA-AAAAGGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * * * **
6482 TAATGATG-GGAATGTGTTT-T-GTCTCCAATTCTCATAAAGAATGGAGATT-GTTATGAG-AAA
62 TAAAGA-GAAGACTATGTTTATGGT-GCCTATCCT-AAAAAGAATGGAGATTAG-TATGAGTATT
* ***
6542 CGATGCTTT-TGTTATTTAA-AGGTTGAACTTTGA
123 C-ATG-TTTGTCTTATTTAAGA-GACAAACTTTGA
* * * * ** * *
6575 TTTAAAGGAAAATTAGGCGG-AGAAAAG-GTTTCCAAGCAAAA-GAAATTCATCAATATCATTTA
1 TTT--A-CAAAA--AGGTGGAAAAAAAGCCTTT-CTTGCAAAACGAAA-GCATCAATATCATGTA
* * * * * ** * * * * *
6637 TCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGAAATA-AATGAAGA-TCGTTACT-AGA
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGAGATTAG-TA-TGAGT
* * * *
6698 ATCCATGTTTATCTCT-TTT--GAGGCATGAACTTAGA
120 ATTCATGTTTGTCT-TATTTAAGAGACA--AACTTTGA
* * * * * *
6733 CTTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTACGAAATGAAAGCATCAATATGATGTATCC-
1 -TTTA-CAAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
** ** * *
6797 AAATGAGAAGAAAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTGTTCAT
63 AAA-GAGAAGACTATGTTTATGGTGCCT-ATCCTAAAAAGAATGGAGATTAGTATGAGTATTCAT
*
6862 GTTAGTCTTATTTAAGAGA-AAACTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** * ** * * * * *
6890 TTCTATTAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATTAATTTCCTGTAACC
1 TT-TA-CAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * *** * * * * *
6955 TAATGAAAAGATTGTGTTT-TGGCT-CCGATTCTCGTGAGGAGTGGAGATT-GTTACGAGAATTG
62 TAAAGAGAAGACTATGTTTATGG-TGCCTATCCT-AAAAAGAATGGAGATTAG-TATGAGTATTC
* * *
7017 ATGCTTGTTTTATTT-AGGGA-ATTAACTTTGA
124 ATGTTTGTCTTATTTAAGAGACA--AACTTTGA
* * * * * * *
7048 TTTAAAGGAAAAAAGGT-CAAAGAAAAG-ATTTCCGTGCAAAACAAAATCATCAATATCAAT-AA
1 TTT--A--CAAAAAGGTGGAAA-AAAAGCCTTT-CTTGCAAAACGAAAGCATCAATATC-ATGTA
* * * ** * * * * * * * *
7110 TCCTAATGAGGAGAATGCGTTTATAGTGCCAAGTGAC-AAAATGAATGAAGATCATTACT-AGAA
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCTA-T-CCTAAAAAGAATGGAGATTAGTA-TGAGTA
* * * * * *
7173 TCCACGTTTGTCTCATTTGAG-GCACGAACTTAGA
121 TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * * * *
7207 CCTTA-AAAAATTTGGTGGGAAAAATGCCTTTCTTGCTAAACGAAAGCACCAATA-CGATGTATC
1 -TTTACAAAAA---GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATC-ATGTATC
* * * * * *
7270 CTAAAGAGAAGACAATGTTCATGTTGTG-TTATCCTGAAAAGAATGGGGATTAGTATGAGTTTTC
61 CTAAAGAGAAGACTATGTTTATG--GTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATTC
*
7334 ATGTTTGTCTTATTTATGAGACAAACTTTGA
124 ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* ** * * * * *
7365 TTCTATCAAAAAGTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCC
1 TT-TA-CAAAAAG-GTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * ** * * *
7430 TAATGAAGGAA-A-TGTGTTT-TGGCT-CCAATTCTTGTAAAGAATAGAGATT-GTTACGAG-AA
62 TAAAG-A-GAAGACTATGTTTATGG-TGCCTA-TCCTAAAAAGAATGGAGATTAG-TATGAGTAT
* * * * * **
7489 ACAATGCTTATCTTATTTAGGGGATGAACTTTGA
122 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** * * * *
7523 TTTAAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGC-AAATGAAAATCATCAATATCATTTAT
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTAT
* * * ** * * * * * * *
7586 CCTAATGAGGAGAATGCGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGAAT
60 CCTAAAGAGAAGACTATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGTAT
* * * *
7649 CCATGTTTGTCATT-TTTGAA-ACACGAACTTAGA
122 TCATGTTTGTC-TTATTT-AAGAGACAAACTTTGA
* *
7682 CTTTACAAAAAATGGTAGG-AAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCA
1 -TTTAC-AAAAA-GGT-GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
*
7746 TAAAGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAT
62 TAAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAATGGAGATTAGTATGAGTATTCAT
7811 GTTTGTCTTATTTAAGAGACAAACTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
** ** * * * *
7840 TTCTATCAAAAACGGTGGAAAAAAAGTTTTTCTAATG--ACCCCAAAGCATAAATTTCATGTAAC
1 TT-TA-CAAAAA-GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATC
* * * * ** * * *
7903 CTAAAGAAGGAA-A-TGTGTTT-TGGGTTCACAATCTTGGAAAGAACTGACACATT--TACGAG-
61 CTAAAG-A-GAAGACTATGTTTAT-GGTGC-CTATCCTAAAAAGAA-TG-GAGATTAGTATGAGT
* * **
7962 AATCGGTGTTTGTCTTATTTAAGAGATGAACTTTGA
120 ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * ** *
7998 TTTAAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAA-GAAAATTATCAATATCATTTA
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTA
* * * * * * *
8060 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATT-GTTACT-AG-
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGAGATTAG-TA-TGAGT
* * * * * **
8121 AATCAACGTTTGTCTCATTTGAG-GTACGAACTTAAA
120 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * ** * *
8157 CTTTACAAAAAATGGTGGGAAAAAAGCTTTTCTTGTGAAACGAAAGCATCAATGTGATGTATCCT
1 -TTTAC-AAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
** * ** * * *
8222 ATTGAGAAGACAATGTTTATGGTGTCGAATCC-AGAAAAG-ATGGGGATTAGCATGAATATTCAT
63 AAAGAGAAGACTATGTTTATGGTG-CCTATCCTA-AAAAGAATGGAGATTAGTATGAGTATTCAT
*
8285 GTTTGTCTTATTTAAGAGATAAACTTT-A
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
** ** *
8313 TTCTATCAAAAACGGTGG-AAAAAAGTTTTTCTAATG-ACCAC-AAAGCATCAATTTCATGTATC
1 TT-TA-CAAAAA-GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATC
* * * * * * * ** * * ** *
8375 CTAATGA-AGGGAATGTGTTT-TAGCT-CCAATTCTTGTAAATAATGGAG-TTTGATACAAG-AA
61 CTAAAGAGA-AGACTATGTTTAT-GGTGCCTA-TCCTAAAAAGAATGGAGATTAG-TATGAGTAT
* * **
8435 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
122 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
8469 TTTAAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAA-GAAAATCATCAATATCATTTA
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTA
* * * * * * * * * *
8531 TCCTAATA-AGGAGAATGTGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGA
59 TCCTAA-AGAGAAGACTATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGT
* * * * * *
8593 ATCCATGTTTGTTGCTT-TTGATG-CACGAACTTAGA
120 ATTCATGTTTG-T-CTTATTTAAGAGACAAACTTTGA
* * ** * ** **
8628 CTTTACATAAAATGGTGGGGAAAAAAGCTTTTCTTGTGAAACGAAAGCATCAATATAACATATTG
1 -TTTACA-AAAA-GGT-GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* *
8693 TAAAGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAAAATGGGGATTAGTATGAGTATTCAT
62 TAAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAATGGAGATTAGTATGAGTATTCAT
* * * ***
8758 GTTTGTCTTACTTAGGAGATAGGTTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * * * *
8787 TTCTAACAAAAATGGTGGAAGGAAAAG-TTTTCTTGCGACACCAAAGCATCAATTTAATGTAACC
1 TT-T-ACAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * ** * * **
8851 TAATGA-AGGGA--ATGTGTATTGGCTTCACAATCTTGGAAAGAACT-GACA-CAGTTACAAG-A
62 TAAAGAGA-AGACTATGTTTA-TGG-TGC-CTATCCTAAAAAGAA-TGGAGATTAG-TATGAGTA
* * * * **
8910 ATCGATGCTTGTTTTCTTTAA-AGGATGAACTTTGA
121 TTC-ATGTTTGTCTTATTTAAGA-GACAAACTTTGA
* * ** * * *
8945 TTTAAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAA-GAAAATCATCAATATCATTTAT
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTAT
* * * ** * * * * *
9008 CCTAATGAGGAGAATGCGTTTATAGTGCCTAATCAC-AAAATGAAT-GATGATCATTACT-AGAA
60 CCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGA-GATTAGTA-TGAGTA
* * * * * *
9070 TCCATGTTTTTCTCATTTAAG-GCACGAGCTTAGA
121 TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * *
9104 CTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAAGCAACAATA-CGATGTAT
1 -TTTACAAAAA---GGTGGAAAAAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATC-ATGTAT
* * * * *
9167 CCTAAAGAGAAGACAATGTTTATGTTGTG-TTATGCTGAAAAGAATGGGGATTAGTATGAGTATT
60 CCTAAAGAGAAGACTATGTTTATG--GTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATT
9231 CATGTTTGTCTTATTTAAGAGACAAACTTTGA
123 CATGTTTGTCTTATTTAAGAGACAAACTTTGA
9263 TT
1 TT
9265 CTATTAGAAA
Statistics
Matches: 3318, Mismatches: 1013, Indels: 829
0.64 0.20 0.16
Matches are distributed among these distances:
152 1 0.00
153 3 0.00
154 28 0.01
155 199 0.06
156 212 0.06
157 460 0.14
158 1238 0.37
159 893 0.27
160 149 0.04
161 22 0.01
162 9 0.00
163 4 0.00
164 74 0.02
165 21 0.01
166 5 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (154 bp):
TTTACAAAAAGGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAA
GAGAAGACTATGTTTATGGTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGA
Found at i:13022 original size:22 final size:22
Alignment explanation
Indices: 12974--13035 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
12964 ACCAATTTTC
*
12974 AAGGGGGAGAAAA--GTTT-TT
1 AAGGGGGAGAAAATCTTTTATT
*
12993 AAGAGGGAGAAAATCTTTTATT
1 AAGGGGGAGAAAATCTTTTATT
*
13015 AAGGGGGAAAAAATCTCTTTA
1 AAGGGGGAGAAAATCT-TTTA
13036 ACCGATTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 12 0.34
21 3 0.09
22 16 0.46
23 4 0.11
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.27
Consensus pattern (22 bp):
AAGGGGGAGAAAATCTTTTATT
Found at i:13028 original size:72 final size:72
Alignment explanation
Indices: 12944--13235 Score: 427
Period size: 72 Copynumber: 4.1 Consensus size: 72
12934 ATTTATATCT
*
12944 AGGGGGAGAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
13009 TTTATTA
66 TTTATTA
* * *
13016 AGGGGGAAAAAATCTCTTTAACCGATTTTCAAGGGGGAGAAATATTGTTTTGAA-A---A-TAAA
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAA-A--GTTTTTAAGAGGGAGAAAA
*
13076 T-TTATATCT-
63 TCTTTTAT-TA
*
13085 AGGGGGAGAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
13150 TTTATTA
66 TTTATTA
*
13157 AGGGGGAAAAAATCTCTTTAACCGATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
*
13222 TTTATCA
66 TTTATTA
13229 AGGGGGA
1 AGGGGGA
13236 GAAATTTTTA
Statistics
Matches: 196, Mismatches: 13, Indels: 22
0.85 0.06 0.10
Matches are distributed among these distances:
66 7 0.04
67 1 0.01
68 1 0.01
69 45 0.23
70 6 0.03
71 6 0.03
72 121 0.62
73 1 0.01
74 1 0.01
75 7 0.04
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (72 bp):
AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
TTTATTA
Found at i:13159 original size:141 final size:141
Alignment explanation
Indices: 12905--13198 Score: 588
Period size: 141 Copynumber: 2.1 Consensus size: 141
12895 CTATAACAAA
12905 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
1 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
12970 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
66 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
13035 AACCGATTTTC
131 AACCGATTTTC
13046 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
1 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
13111 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
66 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
13176 AACCGATTTTC
131 AACCGATTTTC
13187 AAGGGGGAGAAA
1 AAGGGGGAGAAA
13199 AGTTTTTAAG
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 153 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (141 bp):
AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
AACCGATTTTC
Found at i:13163 original size:22 final size:22
Alignment explanation
Indices: 13115--13176 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
13105 ACCAATTTTC
*
13115 AAGGGGGAGAAAA--GTTT-TT
1 AAGGGGGAGAAAATCTTTTATT
*
13134 AAGAGGGAGAAAATCTTTTATT
1 AAGGGGGAGAAAATCTTTTATT
*
13156 AAGGGGGAAAAAATCTCTTTA
1 AAGGGGGAGAAAATCT-TTTA
13177 ACCGATTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 12 0.34
21 3 0.09
22 16 0.46
23 4 0.11
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.27
Consensus pattern (22 bp):
AAGGGGGAGAAAATCTTTTATT
Found at i:13224 original size:20 final size:21
Alignment explanation
Indices: 13191--13260 Score: 83
Period size: 20 Copynumber: 3.4 Consensus size: 21
13181 ATTTTCAAGG
*
13191 GGGAGAAAAGTTTT-T-AAGA
1 GGGAGAAAATTTTTATAAAGA
* *
13210 GGGAGAAAATCTTTTATCAAGG
1 GGGAGAAAAT-TTTTATAAAGA
13232 GGGAG-AAATTTTTATAAAGA
1 GGGAGAAAATTTTTATAAAGA
13252 GGGAGAAAA
1 GGGAGAAAA
13261 ATGAAAACTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
19 9 0.21
20 18 0.42
21 8 0.19
22 8 0.19
ACGTcount: A:0.43, C:0.03, G:0.30, T:0.24
Consensus pattern (21 bp):
GGGAGAAAATTTTTATAAAGA
Found at i:13798 original size:13 final size:13
Alignment explanation
Indices: 13780--13806 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13770 ACATTATGCT
13780 TTGTATCGATACA
1 TTGTATCGATACA
13793 TTGTATCGATACA
1 TTGTATCGATACA
13806 T
1 T
13807 GGTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:13815 original size:19 final size:19
Alignment explanation
Indices: 13790--13846 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
13780 TTGTATCGAT
13790 ACATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
* * *
13809 TCATTGTATCGATAAATAG
1 ACATTGTATCGATACATGG
13828 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
13847 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:16939 original size:165 final size:162
Alignment explanation
Indices: 16729--17102 Score: 414
Period size: 165 Copynumber: 2.3 Consensus size: 162
16719 TTAGATGATT
*
16729 TTTTAAAAATTTTAAACCT-AGAAAAATCCTCCCAAAAACATTTATAAGATAGAAAACTCGGTTT
1 TTTTAAAAATTTTAAA-CTAAGAAAAATCC-CCCGAAAACATTTATAAGATAGAAAACT--GTTT
16793 -TCCAAAAAGAGGAAAATTTTAAAGAAAAAATGAAAAACTAATGAAAATAAATA-AAATTTTCAA
62 ATCCAAAAAGAGGAAAA-TTTAAAGAAAAAATGAAAAACTAATG-AAATAAA-AGAAATTTTCAA
* * *
16856 A-CTGATTTAATCTAAATTAAATGATGATATTTGATGAA
124 ATCTGAATTAATATAAATTAAATGATAATATTTGATGAA
* * * * * *
16894 TTTTAAAAATTATAAACTAAGAAAAAGCGCCCCGAAAATATTTATAGGGTAGAAAACTTTTTAAT
1 TTTTAAAAATTTTAAACTAAGAAAAATC-CCCCGAAAACATTTATAAGATAGAAAACTGTTT-AT
* * * * * * *
16959 TCAAAAATAGGAAAATTTCAAGGAAAAATGAAAAATTCATGAAATAAAAGGAATTTTTCAAATCT
64 CCAAAAAGAGGAAAATTTAAAGAAAAAATGAAAAACTAATGAAATAAAA-GAAATTTTCAAATCT
* * *
17024 GAATTAATATTAGTTGAATGATAATATTTGATGAA
128 GAATTAATATAAATTAAATGATAATATTTGATGAA
* * *
17059 TTTTAAAATTTTTAAACAAAGAAAAATCTCTCCGAAAACATTTA
1 TTTTAAAAATTTTAAACTAAGAAAAATC-CCCCGAAAACATTTA
17103 CGAAAAAGAA
Statistics
Matches: 175, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
162 1 0.01
163 10 0.06
164 34 0.19
165 129 0.74
166 1 0.01
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (162 bp):
TTTTAAAAATTTTAAACTAAGAAAAATCCCCCGAAAACATTTATAAGATAGAAAACTGTTTATCC
AAAAAGAGGAAAATTTAAAGAAAAAATGAAAAACTAATGAAATAAAAGAAATTTTCAAATCTGAA
TTAATATAAATTAAATGATAATATTTGATGAA
Found at i:17115 original size:165 final size:164
Alignment explanation
Indices: 16795--17234 Score: 438
Period size: 165 Copynumber: 2.7 Consensus size: 164
16785 CTCGGTTTTC
* * *
16795 CAAAAAGAGGAAAATTTTAAAGAAAAAATGAAAAACTAATGAAAATAAATA--AAATTTTCAAAC
1 CAAAAATAGGAAAA-TTTCAAGAAAAAATGAAAAACTCATG-AAATAAA-AGGAAATTTTCAAAC
* * * *
16858 TGATTTAATCTAAATTAAATGATGATATTTGATGAATTTTAAAAATTATAAACTAAGAAAAAGCG
63 TGATTTAATATTAATTAAATGATGATATTTGATGAATTTTAAAATTTATAAACAAAGAAAAAGCG
* * *** **
16923 CCCCGAAAATATTTATAGGGTAGAAAACTTTTTAATT
128 CCCCGAAAACATTTAGAGAAAAGAAAACTTCATAATT
* * *
16960 CAAAAATAGGAAAATTTCAAGGAAAAATGAAAAATTCATGAAATAAAAGGAATTTTTCAAATCTG
1 CAAAAATAGGAAAATTTCAAGAAAAAATGAAAAACTCATGAAATAAAAGGAAATTTTCAAA-CTG
* * * * * * * *
17025 AATTAATATTAGTTGAATGATAATATTTGATGAATTTTAAAATTTTTAAACAAAGAAAAATCTCT
65 ATTTAATATTAATTAAATGATGATATTTGATGAATTTTAAAATTTATAAACAAAGAAAAAGCGCC
*
17090 CCGAAAACATTTACGA-AAAAGAAAACTTCATATTT
130 CCGAAAACATTTA-GAGAAAAGAAAACTTCATAATT
*** * * * * * *
17125 TGGAAGTAAGAGGAATTCCAA-AAAAAATCAATAACTCATGAAATAAAAGGAAATTTTCAAAACT
1 CAAAAATAGGA-AAATTTCAAGAAAAAATGAAAAACTCATGAAATAAAAGGAAATTTTC-AAACT
* * *
17189 GATTTCATGATTAATTAAATGATGATATTTAAAGAATTTTAAAATT
64 GATTTAAT-ATTAATTAAATGATGATATTTGATGAATTTTAAAATT
17235 AAAAACTTGA
Statistics
Matches: 223, Mismatches: 45, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
162 1 0.00
163 7 0.03
164 32 0.14
165 140 0.63
166 43 0.19
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (164 bp):
CAAAAATAGGAAAATTTCAAGAAAAAATGAAAAACTCATGAAATAAAAGGAAATTTTCAAACTGA
TTTAATATTAATTAAATGATGATATTTGATGAATTTTAAAATTTATAAACAAAGAAAAAGCGCCC
CGAAAACATTTAGAGAAAAGAAAACTTCATAATT
Found at i:21721 original size:19 final size:17
Alignment explanation
Indices: 21697--21750 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 17
21687 CCATCATGGT
21697 TGTATCGATACAAATAG
1 TGTATCGATACAAATAG
*
21714 AATGTATCAATACACAAGCTAG
1 --TGTATCGATACA-AA--TAG
21736 TGTATCGATACAAAT
1 TGTATCGATACAAAT
21751 CCATCAGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 1 0.03
19 13 0.43
20 13 0.43
22 3 0.10
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (17 bp):
TGTATCGATACAAATAG
Found at i:21894 original size:20 final size:21
Alignment explanation
Indices: 21852--21896 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
21842 CAAGCTACTA
21852 TATCAATACAAGCCTTAAAAG
1 TATCAATACAAGCCTTAAAAG
* *
21873 TATCAATACATG-CTTCAAAG
1 TATCAATACAAGCCTTAAAAG
21893 TATC
1 TATC
21897 GATAGAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (21 bp):
TATCAATACAAGCCTTAAAAG
Found at i:26398 original size:51 final size:51
Alignment explanation
Indices: 26330--26494 Score: 215
Period size: 51 Copynumber: 3.2 Consensus size: 51
26320 ATAACAGGGC
* * * * * ***
26330 TGGAGTATCTCCAATTGTGGAAAATCGATGCTTTAGAAATAAGGCCGGGGT
1 TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
* *
26381 TGGAGTATCCCCGATTGT-GAGAAATTGGTGTTTTGGAAATAAAATCGGAGT
1 TGGAGTATCCCCGATTGTGGA-AAATTGGTGTTTTAGAAATAAAATCGGGGT
*
26432 TGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGGGT
1 TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
26483 TGGAGTATCCCC
1 TGGAGTATCCCC
26495 TCGAAAATAA
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
50 2 0.02
51 95 0.96
52 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (51 bp):
TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
Found at i:26513 original size:28 final size:29
Alignment explanation
Indices: 26477--26550 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
26467 GAAATAAAAT
26477 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCCTCGAGAAATAA
* *
26505 CGGGATTGGAGTAT--CCTCGATGACATAA
1 CGGGGTTGGAGTATCCCCTCGA-GAAATAA
*
26533 CGGGGTTGGAGTACCCCC
1 CGGGGTTGGAGTATCCCC
26551 GATTATGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 6 0.16
28 30 0.79
30 2 0.05
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCTCGAGAAATAA
Found at i:26573 original size:107 final size:107
Alignment explanation
Indices: 26430--26670 Score: 306
Period size: 107 Copynumber: 2.3 Consensus size: 107
26420 TAAAATCGGA
* *** * *
26430 GTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCC
* * * * *
26495 TCGAAAATAAC-GGGATTGGAGTATCCTCGATGACATAACGGG
66 TCGAAAATAACAAGG-TTAGAGTATCCCCGATGAAATAACGAG
* * * *
26537 GTTGGAGTACCCCCGATTATGAAAAATCAATATTTTAGATATAAAGCCGGGGTTAGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCC
*
26602 TCGGAAATAACAAGGTTAGAGTATCCCCGATGAAATAACGAG
66 TCGAAAATAACAAGGTTAGAGTATCCCCGATGAAATAACGAG
26644 GTTGGAGTATCCCC-AGTTGTGAAAAAT
1 GTTGGAGTATCCCCGA-TTGTGAAAAAT
26671 TTAGAAATTT
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 1 0.01
107 111 0.97
108 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (107 bp):
GTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCC
TCGAAAATAACAAGGTTAGAGTATCCCCGATGAAATAACGAG
Found at i:26627 original size:28 final size:28
Alignment explanation
Indices: 26587--26657 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
26577 ATAAAGCCGG
**
26587 GGTTAGAGTATCCCCTCGGAAATAACAA
1 GGTTAGAGTATCCCCGAGGAAATAACAA
* *
26615 GGTTAGAGTATCCCCGATGAAATAACGA
1 GGTTAGAGTATCCCCGAGGAAATAACAA
*
26643 GGTTGGAGTATCCCC
1 GGTTAGAGTATCCCC
26658 AGTTGTGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (28 bp):
GGTTAGAGTATCCCCGAGGAAATAACAA
Found at i:27774 original size:20 final size:20
Alignment explanation
Indices: 27749--27796 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
27739 AAATCTGATT
27749 TTGGCACACAAATAAGCATC
1 TTGGCACACAAATAAGCATC
* *
27769 TTGGCACATAAATAAGCATG
1 TTGGCACACAAATAAGCATC
27789 TTGGCACA
1 TTGGCACA
27797 AACAACATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (20 bp):
TTGGCACACAAATAAGCATC
Found at i:28999 original size:20 final size:20
Alignment explanation
Indices: 28974--29028 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
28964 AAAATGCCTG
*
28974 AATATATCGATACATTGTAA
1 AATATATCGATACATTGCAA
*
28994 AATATATCGATACAATGCAA
1 AATATATCGATACATTGCAA
* *
29014 AATGTATTGATACAT
1 AATATATCGATACAT
29029 CTGGGTAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (20 bp):
AATATATCGATACATTGCAA
Found at i:29068 original size:12 final size:13
Alignment explanation
Indices: 29043--29071 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
29033 GTAAACCCAG
29043 AATGTATCGATAC
1 AATGTATCGATAC
29056 AATGTAT-GATAC
1 AATGTATCGATAC
29068 AATG
1 AATG
29072 GACAATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:29091 original size:20 final size:20
Alignment explanation
Indices: 29054--29109 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
29044 ATGTATCGAT
*
29054 ACAATGTAT-GATACAATGG
1 ACAATGTATCGATACAATGA
*
29073 ACAATGTATCGATATAATGA
1 ACAATGTATCGATACAATGA
29093 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
29110 ATTGTGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 9 0.27
20 24 0.73
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:29317 original size:13 final size:13
Alignment explanation
Indices: 29299--29325 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
29289 GTCCTTTTTT
29299 GCATCCCGAACAC
1 GCATCCCGAACAC
29312 GCATCCCGAACAC
1 GCATCCCGAACAC
29325 G
1 G
29326 TCCCCATACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.44, G:0.19, T:0.07
Consensus pattern (13 bp):
GCATCCCGAACAC
Found at i:29792 original size:53 final size:53
Alignment explanation
Indices: 29734--29840 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
29724 TTAATTTAAG
* *
29734 AAAGACAATGGAGAAAGAAATCGCCATATTCTACCAACAAGTTTCCTTTCCCT
1 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
29787 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
1 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
29840 A
1 A
29841 TTTAGTATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.23
Consensus pattern (53 bp):
AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
Found at i:29954 original size:23 final size:23
Alignment explanation
Indices: 29927--29972 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
29917 TTCAGCAAAA
29927 AAAAAAGAGAGAAAAGA-GAGAAAG
1 AAAAAAGA-A-AAAAGAGGAGAAAG
*
29951 AAAAAAGAAAAAATAGGAGAAA
1 AAAAAAGAAAAAAGAGGAGAAA
29973 ATATAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 7 0.35
24 8 0.40
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (23 bp):
AAAAAAGAAAAAAGAGGAGAAAG
Found at i:29991 original size:31 final size:32
Alignment explanation
Indices: 29925--29998 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
29915 AGTTCAGCAA
*
29925 AAAAAAAAGAGAGAAAAGAGAGAAAGAAAAAAG
1 AAAAAATAG-GAGAAAAGAGAGAAAGAAAAAAG
* * *
29958 AAAAAATAGGAGAAAATATAGAAA-AAAATAG
1 AAAAAATAGGAGAAAAGAGAGAAAGAAAAAAG
*
29989 AAAAACTAGG
1 AAAAAATAGG
29999 CTAGTTTTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 15 0.42
32 13 0.36
33 8 0.22
ACGTcount: A:0.72, C:0.01, G:0.20, T:0.07
Consensus pattern (32 bp):
AAAAAATAGGAGAAAAGAGAGAAAGAAAAAAG
Found at i:30438 original size:31 final size:31
Alignment explanation
Indices: 30403--30464 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
30393 GTCGAAACTT
30403 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
1 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
30434 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
1 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
30465 CTGGTTGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (31 bp):
GTTGAATCATTGTCTTGCTTGCTTAAACAGG
Found at i:34794 original size:13 final size:13
Alignment explanation
Indices: 34776--34802 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34766 ACATTATGCT
34776 TTGTATCGATACA
1 TTGTATCGATACA
34789 TTGTATCGATACA
1 TTGTATCGATACA
34802 T
1 T
34803 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:34799 original size:33 final size:32
Alignment explanation
Indices: 34757--34821 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
34747 CACACCAAGA
* * *
34757 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATGAT-CATTGTATCAATACAT
34790 TGTATCGATACATGATCATTGTATCAATACAT
1 TGTATCGATACATGATCATTGTATCAATACAT
34822 GGACCATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATCAATACAT
Found at i:34831 original size:20 final size:20
Alignment explanation
Indices: 34786--34862 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
34776 TTGTATCGAT
34786 ACATTGTATCGATACAT-GA
1 ACATTGTATCGATACATGGA
* *
34805 TCATTGTATCAATACATGGA
1 ACATTGTATCGATACATGGA
*
34825 CCATTGTATCGATACATGGA
1 ACATTGTATCGATACATGGA
*
34845 AAATTGTATCGATACATG
1 ACATTGTATCGATACATG
34863 AAACTAGCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 15 0.29
20 36 0.71
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (20 bp):
ACATTGTATCGATACATGGA
Found at i:34928 original size:13 final size:13
Alignment explanation
Indices: 34907--34937 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
34897 TGATACATGG
*
34907 TACAATGTATCGA
1 TACATTGTATCGA
34920 TACATTGTATCGA
1 TACATTGTATCGA
34933 TACAT
1 TACAT
34938 GATGAAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:34952 original size:33 final size:33
Alignment explanation
Indices: 34891--34959 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
34881 TACCCACTCT
* * * *
34891 TTGTATTGATACATGGTACAATGTATCGATACA
1 TTGTATCGATACATGATACAATGAATCGATAAA
34924 TTGTATCGATACATGATGA-AATGAATCGATAAA
1 TTGTATCGATACATGAT-ACAATGAATCGATAAA
34957 TTG
1 TTG
34960 CTTGTAATGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (33 bp):
TTGTATCGATACATGATACAATGAATCGATAAA
Found at i:41835 original size:941 final size:940
Alignment explanation
Indices: 39846--43312 Score: 3738
Period size: 941 Copynumber: 3.7 Consensus size: 940
39836 AGGAATCAAA
* * * * * *
39846 GTTTGTCCCATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGT
1 GTTTGTCTCTTTTGAAGCACGAACTTAGACTTTA-AAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* ** **
39911 GAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGCCG-AATCTAGA
65 GAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTG-CGTAATCTAG-
39975 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
128 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
* * * *
40040 CAAAAATGGTGGAA--AAAAGTTTTTCTAAT-GACCCCAAAGCATCAATTTCATGTATCCTAATG
193 CAGAAACGGTGGAAGGAAAAGTTTTTCT--TCGACACCAAAGCATCAATTTCATATATCCTAA-G
* * *
40102 AAGGGAATGTGTTTTGGCTCCGATTCTTGTAAAGAAT-G-GAGT-TTGATGCAAGAATCGATGCT
255 AAGGGAATGTGTTTTGGCTCC-AATCTTGAAAAGAATAGAGAGTGTT-ATG--AGAAACGATGCT
40164 TGTCTTATTTAAGGGATGAACTTTGATTTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
316 TGTCTTATTTAAGGGATGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
*
40229 AAGCCAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAA
380 AAG-CAAATCATCAATATCATTTATCCTAATGAGGAGAATGTCTTTATAGTGCCTAACCACAAAA
* * *
40294 TGAAAGAAGATCATTACTAGAATCCATGTTTGTTGCTTTTGCTTTTGATGCATGAACTTAGGCTT
444 TGAAAGAAGATCATTACTAGAATCCATGTTTG-T-C--TT-CTTTTGAGGCACGAACTTAGACTT
* * * * * ** * * * **
40359 TGCATAAAATGGTGGGAAAAAAAACCTTTTTTTGTGAAACGAAAGCATCGATATAACGTATTGTA
504 TACAAAAAATGGTTGG-AAAAAAGCC-TTTCTTACGAAACGAAAGCATCAATATGATGTATCCTA
* *
40424 AAGAGAAGACTATGTTTATGGTGCCTTATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGT
567 AAGAGAAAACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATG-
* * *
40488 TTGTCTTACTTAGGAGACATG-CTTTGATTCTAAC-AAAATGGTGGAAGGAAAAGTTTTTCTTGC
631 TTGTCTTATTTA-GAGA-AAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGC
* * * *
40551 GACACCAATGCATCAATTTCATGTAACCTAATGAAGGGAATGTGTTTTGGCTTCAC-AATCTTGG
694 GACACCAAAGCATCAATTTCATGTAACCTAATGAAGGG-ATGTGTTTTGGC-TC-CGATTCTCGT
* ** * * * *
40615 AAAGAACT-GATACCGTTACGAGAATC-GATGCTTGTTTTCTTAAGGGATGAACTTTGATTTAAA
756 AAAGAA-TGGAGATTGTTACGAGAAACTGATGCTTCTTAT-TTAA-GAATGAAC-TTGATTTAAA
* * *
40678 GGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATTATTTATCCTAATGA
817 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
*
40743 GGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATG-ATGATCATTACTAGAATCCAT
882 GGAGAATGTGTTTATAGTGCCTAA-C-CTAAAATGAATGAATGATCATTACTAGAATCCAC
* *
40802 G-TT-TCTCTTATTTAAGGCACGAACTTAGACTTTAAAAAATTGGTGGGAAAAAAGCCTTT-TTG
1 GTTTGTCTCTT-TTGAA-GCACGAACTTAGACTTTAAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * * *
40864 CGAAATGAAAGCACCAATACGATGTATCCTAAAGAGAGGACAATGTTTATGTTGTGTTATCTTGA
64 CGAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCGTAATCTAGA
* * *
40929 AAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTTTATC
129 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATC
*
40994 AGAAACGGTGGAA-GAAAATGTTTTTCTTGCGAC-CCAAAGACATCAATTTCATATAT-ATAA-A
194 AGAAACGGTGGAAGGAAAA-GTTTTTCTT-CGACACCAAAG-CATCAATTTCATATATCCTAAGA
* * * * **
41055 GGGGAATGTGTTTTGGTTTTACAATCTTGAAAAGAACT-GAG-GCGTTATGAGAATTGATGCTTG
256 AGGGAATGTGTTTTGG--CTCCAATCTTGAAAAGAA-TAGAGAGTGTTATGAGAAACGATGCTTG
* * *
41118 TCTTATTTAGGGGATGAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGCAAA
318 TCTTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
41182 G-AAATCATCAATTTCATTTATGCTAAT-AGGGGGAATG-CTTCATAGTGCCTAATCACAAAATG
382 GCAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTCTTTATAGTGCCTAACCACAAAATG
* * * * ** * * * *
41244 AATGAAGATTATTACCAGAATCTA-AATTGTC-TCATATGAGGCACGTACTGAAGACTTTACAAA
446 AAAGAAGATCATTACTAGAATCCATGTTTGTCTTCTTTTGAGGCACGAACT-TAGACTTTACAAA
* * *
41307 AAATGGTTGGAAAAAAGCCTTTCTTATGAAATGAAAGTATCAATATGATTGTATCCTAAAGAGAA
510 AAATGGTTGGAAAAAAGCCTTTCTTACGAAACGAAAGCATCAATATGA-TGTATCCTAAAGAGAA
* *
41372 AACTATGTTTATGGTGCCTTATCCTGAAAAGACTAGGGATTAGTATGAGT-TTCATGTTGTCTTT
574 AACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTGTCTTA
* * *
41436 TTTGAGAGAAAGAGTTTGATTTCTATCAAAAACGATGGAAGG-AAAGTTTTTCTTGCGA-ACCAA
639 TTT-AGAGAAAGACTTTGA-TTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAA
* *
41499 AGAATCAATTTCATGTATCCTAATGAAGGGATGTG-TTTGGCTCCGATTCTCGTAAAGAATGGAG
702 AGCATCAATTTCATGTAACCTAATGAAGGGATGTGTTTTGGCTCCGATTCTCGTAAAGAATGGAG
*
41563 ATTGTTACGAGAAACTGATGCTATCTTATTTAAGTATGAACATTGATTT-AAGGAAAATAGGGCA
767 ATTGTTACGAGAAACTGATGCT-TCTTATTTAAGAATGAAC-TTGATTTAAAGGAAAATAGGGCA
* * *
41627 AAGAAAAGATTCCCATACAAAAGAAAATCATCAAT-TCATTTATCCTAATGAGGTG-ATGTGTTT
830 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * * * * *
41690 ATCGTGGCCTAACCTAAATTGAAAGAATGATCGTTACTAAAATTCAG
895 ATAGT-GCCTAACCTAAAATGAATGAATGATCATTACTAGAATCCAC
* * *
41737 GTTTGTCTCTTTTGAAGCAGGAACTTAGATTTTTACAAAAAATGGTGGGAGAAAAGCCTTTCTTG
1 GTTTGTCTCTTTTGAAGCACGAACTTAGA-CTTTA-AAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * * * *
41802 GGAAATGAGAGCACACCCAATATGGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAAT-T
64 CGAAACGAAAG--CA-CCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCGTAATCT
* * * * *
41866 CAGAAAATAATGGGGATTAGTATGAGTATCCATGTTGGTCGTATTTAAGAGAC-AACTTTGATTC
126 -AGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
* **
41930 TAACCAGAAAC-GTGGAAGGAAAA-TTTTTCTTCGACACC-AAGCATCAATTTTGTATATCCTAA
190 T-ATCAGAAACGGTGGAAGGAAAAGTTTTTCTTCGACACCAAAGCATCAATTTCATATATCCTAA
* * * * *
41992 TGATGGGAATGTG-TTTGTCTCCAAT-TCTCATAAAGAAATGGAGATTGTTATGAGAAACGATGC
254 -GAAGGGAATGTGTTTTGGCTCCAATCT-TGA-AAAG-AATAGAGAGTGTTATGAGAAACGATGC
* * * * ** * *
42055 TTTTGTTATTTAAAGGTTGAACTTTGATTTAAAGGAAAATTA-GGCGGAGAAAAGGTTTCCAAGC
315 TTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGC
* * * * *
42119 AAAAG-AAATTCATCAATATCA-TTATCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGA
379 -AAAGCAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTCTTTATAGTGCCTAACCACAA
* * *
42181 AAT-AAATGAAGATCGTTACTAGAATCCATGTTTATC-TCTTTTGAGGCATGAACTTAGACTTTA
442 AATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTTCTTTTGAGGCACGAACTTAGACTTTA
* * *
42244 TAAAAAATGG-TGGGAAAAAGCCTTTCTTACGAAATGAAAGCATC-ATATGATGTATCC-AAATG
506 CAAAAAATGGTTGGAAAAAAGCCTTTCTTACGAAACGAAAGCATCAATATGATGTATCCTAAA-G
* * * * *
42306 AGAAGAA-AATGTTTATGGTGCCTAATCCGGAAAAGAA-GGGGATTAGTATGAGTGTTCATGTTA
570 AGAA-AACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTT-
*
42369 GTCTTATTTAAGAGAAA-ACTTTGATTCTATTAAAAATTGGTGGAAGGAAAAGTTTTTCTTGCGA
633 GTCTTATTT-AGAGAAAGACTTTGATTCTATCAAAAA-TGGTGGAAGGAAAAGTTTTTCTTGCGA
* * * ** * *
42433 CCCCAAAGCATTAATTTCCTGTAACCTAATGAAAAGATTGTGTTTTGGGCTCCGATTCTCGTGAG
696 CACCAAAGCATCAATTTCATGTAACCTAATGAAGGGA-TGTGTTTT-GGCTCCGATTCTCGTAAA
* * * * *
42498 GAGTGGAGATTGTTACGAG-AATTGATGCTTGTTTTATTTAGGGGAATTAACTTGATTTTAAAGG
759 GAATGGAGATTGTTACGAGAAACTGATGC-T-TCTTATTTA--AGAATGAACTTGA-TTTAAAGG
* * * * * *
42562 AAAAAAGGTCAAAG-AAAGATTTCCGTGCAAAACAAAATCATCAAGTATCAATAATCCTAATGAG
819 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA-TATCATTTATCCTAATGAG
* *
42626 GAGAATGCGTTTATAGTGCC-AA-GTGGACAAATGAATGAA-GATCATTACTAGAATCCAC
883 GAGAATGTGTTTATAGTGCCTAACCT--A-AAATGAATGAATGATCATTACTAGAATCCAC
* * * * *
42684 GTTTGTCTCATTTGAGGCACGAACTTAGACCTTAAAAAATTTGGTGGGAAAAATGCCTTTCTTGC
1 GTTTGTCTCTTTTGAAGCACGAACTTAGACTTTAAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGC
* * * * *
42749 TAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTCATGTTGTGTTATCT-GAA
65 GAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCGTAATCTAGAA
* **
42813 AAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTATCA
130 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCA
* * * *
42878 -AAAAGTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATGAA
195 GAAACG-GTGGAAGGAAAAGTTTTTCTT-CGACACCAAAGCATCAATTTCATATATCCTAA-GAA
* * * * * *
42942 GGAAATGTGTTTTGGCTCCAATTCTTGTAAAGAATAGAGATTGTTACGAGAAACAATGCTTATCT
257 GGGAATGTGTTTTGGCTCCAA-TCTTGAAAAGAATAGAGAGTGTTATGAGAAACGATGCTTGTCT
* * *
43007 TATTTAGGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAATGAA
321 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-GCA
43072 AATCATCAATATCATTTATCCTAATGAGGAGAATG-CGTTTATAGTGCCTAACCACAAAATGAAA
385 AATCATCAATATCATTTATCCTAATGAGGAGAATGTC-TTTATAGTGCCTAACCACAAAATGAAA
* **
43136 GAAGATCATTACTAGAATCCATGTTTGTCAT-TTTTGAAACACGAACTTAGACTTTACAAAAAAT
449 GAAGATCATTACTAGAATCCATGTTTGTCTTCTTTTGAGGCACGAACTTAGACTTTACAAAAAAT
* * * * *
43200 GGTAGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGA--TATCATAAAGAGAAGACTA
514 GGTTGGAAAAAAGCCTTTCTTACGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAAACTA
* * * *
43263 GGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTATTATGAGTATTCA
579 TGTTTATGGTGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATTCA
Statistics
Matches: 2111, Mismatches: 298, Indels: 211
0.81 0.11 0.08
Matches are distributed among these distances:
933 1 0.00
934 21 0.01
935 54 0.03
936 59 0.03
937 120 0.06
938 103 0.05
939 73 0.03
940 225 0.11
941 260 0.12
942 148 0.07
943 106 0.05
944 15 0.01
945 53 0.03
946 171 0.08
947 109 0.05
948 169 0.08
949 87 0.04
950 6 0.00
951 35 0.02
952 54 0.03
953 89 0.04
954 78 0.04
955 58 0.03
956 17 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (940 bp):
GTTTGTCTCTTTTGAAGCACGAACTTAGACTTTAAAAAAATGGTGGGAAAAAAGCCTTTCTTGCG
AAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCGTAATCTAGAAA
AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAG
AAACGGTGGAAGGAAAAGTTTTTCTTCGACACCAAAGCATCAATTTCATATATCCTAAGAAGGGA
ATGTGTTTTGGCTCCAATCTTGAAAAGAATAGAGAGTGTTATGAGAAACGATGCTTGTCTTATTT
AAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAGCAAATCAT
CAATATCATTTATCCTAATGAGGAGAATGTCTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
ATTACTAGAATCCATGTTTGTCTTCTTTTGAGGCACGAACTTAGACTTTACAAAAAATGGTTGGA
AAAAAGCCTTTCTTACGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAAACTATGTTTAT
GGTGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTGTCTTATTTAGAGAAAGA
CTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCAT
GTAACCTAATGAAGGGATGTGTTTTGGCTCCGATTCTCGTAAAGAATGGAGATTGTTACGAGAAA
CTGATGCTTCTTATTTAAGAATGAACTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCTAA
AATGAATGAATGATCATTACTAGAATCCAC
Found at i:43134 original size:474 final size:474
Alignment explanation
Indices: 39846--43312 Score: 3793
Period size: 474 Copynumber: 7.3 Consensus size: 474
39836 AGGAATCAAA
* * *
39846 GTTTGTCCCATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG-
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* ** **
39910 TGAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGCCGAAT-CTAG
66 T-AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-G
*
39974 AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTA
129 -AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
*** *
40039 TCAAAAATGGTGGAA--AAAAGTTTTTCTAATGACCCCAAAGCATCAATTTCATGTATCCTAATG
193 TCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATG
* * * * *
40102 AAGGGAATGTGTTTTGGCTCCGATTCTTGTAAAGAATGGAGTTTGATGCAAGAATCGATGCTTGT
257 AAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGT
40167 CTTATTTAAGGGATGAACTTTGATTTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAA
322 CTTATTTAAGGGATGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
*
40231 GCCAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATG
386 G-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATG
*
40296 AAAGAAGATCATTACTAGAATCCAT
450 AATGAAGATCATTACTAGAATCCAT
* * * * * * *
40321 GTTTGTTGCTTTTGCTTTTGATGCATGAACTTAGGCTTTGCATAAAATGGTGGGAAAAAAAACCT
1 GTTTG-T-C---T-CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGG-AAAAAAGCC-
* * * * ** *
40386 TTTTTTG-TGAAACGAAAGCATCGATATAACGTATTGTAAAGAGAAGACTATGTTTATGGTGCCT
58 TTTCTTGCT-AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCT
* * **
40450 TATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGACATGCTTTG
122 TATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
40514 ATTCTAACAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAATGCATCAATTTCATGTAACC
187 ATTCTATCAAAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCC
* * **
40579 TAATGAAGGGAATGTGTTTTGGCTTCACAA-TCTTGGAAAGAACT-GATACCGTTACGAGAATCG
252 TAATGAAGGGAATGTGTTTTGGC-TC-CAATTCTTGTAAAGAA-TGGAGATTGTTACGAGAATCG
*
40642 ATGCTTGT-TT-TCTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTC
314 ATGCTTGTCTTAT-TTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
40705 ACGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
378 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCA
*
40770 CAAAATGAATGATGATCATTACTAGAATCCAT
443 CAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
40802 GTTTCTCTTATTTAAGGCACGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTT-TTGC
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* * * * * * ** *
40865 GAAATGAAAGCACCAATACGATGTATCCTAAAGAGAGGACAATGTTTATGTTGTGTTATCTTGAA
66 TAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAA
* * * *
40930 AAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTTTATCA
131 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * *
40995 GAAACGGTGGAA-GAAAATGTTTTTCTTGCGAC-CCAAAGACATCAATTTCATATAT-ATAA--A
196 -AAAAGGTGGAAGGAAAA-GTTTTTCTTGCGACACCAAAG-CATCAATTTCATGTATCCTAATGA
* * * * ** * *
41055 GGGGAATGTGTTTTGGTTTTACAA-TCTTGAAAAGAACT-GAG-GCGTTATGAGAATTGATGCTT
258 AGGGAATGTGTTTTGG--CTCCAATTCTTGTAAAGAA-TGGAGATTGTTACGAGAATCGATGCTT
* * *
41117 GTCTTATTTAGGGGATGAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGC-A
320 GTCTTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * * * * *
41180 AAG-AAATCATCAATTTCATTTATGCTAAT-AGGGGGAATG-CTTCATAGTGCCTAATCACAAAA
384 AAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAACCACAAAA
* * *
41242 TGAATGAAGATTATTACCAGAATCTA-
448 TGAATGAAGATCATTACTAGAATCCAT
** * * * *
41268 AATTGTCTCATATGAGGCACGTACTGAAGACTTTACAAAAAATGGTTGGAAAAAAGCCTTTCTT-
1 GTTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * *
41332 ATGAAATGAAAGTATCAATATGATTGTATCCTAAAGAGAAAACTATGTTTATGGTGCCTTATCCT
65 CT-AAACGAAAGCATCAATATGA-TGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT
* * * * *
41397 GAAAAGACTAGGGATTAGTATGAGT-TTCATG-TTGTCTTTTTTGAGAGA-AAGAGTTTGATTTC
128 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA-ACTTTGA-TTC
* *
41459 TATCAAAAACGATGGAAGG-AAAGTTTTTCTTGCGA-ACCAAAGAATCAATTTCATGTATCCTAA
191 TATCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAA
* * *
41522 TGAAGGG-ATGTG-TTTGGCTCCGATTCTCGTAAAGAATGGAGATTGTTACGAGAAACTGATGC-
255 TGAAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATC-GATGCT
* * * * *
41584 TATCTTATTTAA-GTATGAACATTGATTT-AAGGAAAATAGGGCAAAGAAAAGATTCCCATACAA
319 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * * *
41647 AAGAAAATCATCAAT-TCATTTATCCTAATGAGGTG-ATGTGTTTATCGTGGCCTAACC-TAAAT
384 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT-GCCTAACCACAAAA
* * * * *
41709 TGAAAGAATGATCGTTACTAAAATTCAG
448 TGAATGAA-GATCATTACTAGAATCCAT
* * * * *
41737 GTTTGTCTCTTTTGAAGCAGGAACTTAGATTTTTACAAAAAATGGTGGGAGAAAAGCCTTTCTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
** * * * * * * *
41802 GGAAATGAGAGCACACCCAATATGGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATTC
65 CTAAACGAAAG--CA-TCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCC
* * * * *
41867 AGAAAATAATGGGGATTAGTATGAGTATCCATGTTGGTCGTATTTAAGAGAC-AACTTTGATTCT
127 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * ** *
41931 AACCAGAAACGTGGAAGGAAAA-TTTTTCTT-CGACACC-AAGCATCAATTTTGTATATCCTAAT
192 -ATCAAAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAT
* * ** * *
41993 GATGGGAATGTG-TTTGTCTCCAATTCTCATAAAGAAATGGAGATTGTTATGAGAAACGATGCTT
256 GAAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAG-AATGGAGATTGTTACGAGAATCGATGCTT
* * * * ** * *
42057 TTGTTATTTAAAGGTTGAACTTTGATTTAAAGGAAAATTA-GGCGGAGAAAAGGTTTCCAAGCAA
320 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAA
* * * * *
42121 AAGAAATTCATCAATATCA-TTATCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGAAAT
384 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAAT
* *
42184 AAATGAAGATCGTTACTAGAATCCAT
449 GAATGAAGATCATTACTAGAATCCAT
* * * * *
42210 GTTTATCTCTTTTGAGGCATGAACTTAGACTTTATAAAAAATGGTGGG-AAAAAGCCTTTCTTAC
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* * * * *
42274 GAAATGAAAGCATC-ATATGATGTATCC-AAATGAGAAGAAAATGTTTATGGTGCCTAATCCGGA
66 TAAACGAAAGCATCAATATGATGTATCCTAAA-GAGAAGACAATGTTTATGGTGCCTTATCCTGA
* * *
42337 AAAGAA-GGGGATTAGTATGAGTGTTCATGTTAGTCTTATTTAAGAGA-AAACTTTGATTCTATT
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * *
42400 AAAAATTGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATTAATTTCCTGTAACCTAATGA
195 AAAAA--GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGA
** * * * * * * *
42465 AAAGATTGTGTTTTGGGCTCCGATTCTCGTGAGGAGTGGAGATTGTTACGAGAATTGATGCTTGT
258 AGGGAATGTGTTTT-GGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGT
* * * * * *
42530 TTTATTTAGGGGAATTAAC-TTGATTTTAAAGGAAAAAAGGTCAAAG-AAAGATTTCCGTGCAAA
322 CTTATTTAAGGG-ATGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * **
42593 ACAAAATCATCAAGTATCAATAATCCTAATGAGGAGAATGCGTTTATAGTGCC-AAGTGGAC-AA
385 AGAAAATCATCAA-TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA--CCACAAA
*
42656 ATGAATGAAGATCATTACTAGAATCCAC
447 ATGAATGAAGATCATTACTAGAATCCAT
* * *
42684 GTTTGTCTCATTTGAGGCACGAACTTAGACCTTA-AAAAATTTGGTGGGAAAAATGCCTTTCTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * * **
42748 CTAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTCATGTTGTGTTAT-CTGA
65 CTAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
* *
42812 AAAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTATC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * *
42877 AAAAAGTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATGAA
195 AAAAAG-GTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAA
* * * * *
42942 GGAAATGTGTTTTGGCTCCAATTCTTGTAAAGAATAGAGATTGTTACGAGAAACAATGCTTATCT
259 GGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * *
43007 TATTTAGGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAATGAA
324 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* *
43072 AATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAACCACAAAATGAAAG
389 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAATG
43137 AAGATCATTACTAGAATCCAT
454 AAGATCATTACTAGAATCCAT
* ** *
43158 GTTTGTCAT-TTTTGAAACACGAACTTAGACTTTACAAAAAATGGTAGGAAAAAAGCCTTTCTTG
1 GTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * *
43222 CAAAACGAAAGCATCAATATGA--TATCATAAAGAGAAGACTAGGTTTATGGTGCCTTATCCTAA
65 CTAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
*
43285 AAAGAATGGGGATTATTATGAGTATTCA
130 AAAGAATGGGGATTAGTATGAGTATTCA
Statistics
Matches: 2497, Mismatches: 393, Indels: 206
0.81 0.13 0.07
Matches are distributed among these distances:
465 5 0.00
466 110 0.04
467 184 0.07
468 164 0.07
469 140 0.06
470 199 0.08
471 257 0.10
472 218 0.09
473 185 0.07
474 297 0.12
475 166 0.07
476 135 0.05
477 24 0.01
479 1 0.00
480 8 0.00
481 219 0.09
482 92 0.04
483 88 0.04
484 5 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (474 bp):
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
TAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAA
AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGG
GAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTA
TTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAATGAA
GATCATTACTAGAATCCAT
Done.