Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1312
Parameters: 2 7 7 80 10 50 1000
Length:  28247

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15863--15915
16
3.0
19
79
17
53
39
0
0
60
0.97
16368--16408
15
2.6
16
80
11
57
63
0
0
36
0.95
16373--16422
16
3.2
15
80
8
55
62
0
0
38
0.96
16513--16566
20
2.7
21
80
13
69
27
3
3
64
1.27
16833--16863
2
15.5
2
100
0
62
0
48
0
51
1.00
16863--16898
2
18.0
2
94
0
63
47
0
2
50
1.15
17203--17364
30
5.4
30
87
0
207
9
31
38
20
1.85
17218--17559
60
5.4
60
83
10
333
10
33
36
19
1.86
17227--17560
15
22.3
15
69
3
215
10
34
35
19
1.86
17347--17606
30
8.7
30
87
1
285
11
32
35
21
1.89
17254--17470
105
2.1
105
90
0
335
9
35
35
19
1.84
17365--17606
90
2.7
90
88
1
342
12
31
35
20
1.90
17361--17567
60
3.5
60
93
0
351
12
33
35
18
1.88
17361--17606
60
4.1
60
91
1
350
12
31
34
21
1.90
17648--17713
30
2.2
30
89
5
98
9
30
34
25
1.87
18434--18476
21
2.0
22
82
13
54
41
4
2
51
1.35
19750--19903
80
1.9
79
89
2
238
44
3
12
38
1.59
19865--19923
27
2.2
27
93
0
100
35
1
18
44
1.60
21475--21500
13
2.0
13
100
0
52
30
15
15
38
1.88
24477--24543
37
1.9
35
88
11
102
29
25
11
32
1.92
25002--25027
13
2.0
13
100
0
52
30
15
15
38
1.88
27313--27359
23
2.0
24
84
12
62
61
19
4
14
1.49

Tables:   1

The End!