Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1313
Parameters: 2 7 7 80 10 50 1000
Length:  20857

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1827--1936
55
1.9
58
92
5
190
46
22
7
23
1.77
2922--2977
29
2.0
28
85
3
76
51
3
0
44
1.18
3490--3566
2
39.0
2
86
2
111
55
0
0
44
0.99
3980--4049
32
2.3
30
82
5
77
44
2
0
52
1.15
4462--4500
18
2.1
19
85
4
53
20
0
10
69
1.17
7535--7570
4
9.0
4
93
0
63
50
2
0
47
1.15
8254--8288
3
11.7
3
100
0
70
31
0
0
68
0.90
8545--8612
25
2.7
26
82
8
79
60
2
0
36
1.12
8789--8825
12
2.7
14
80
20
51
64
0
0
35
0.94
9386--9426
18
2.2
19
91
4
66
26
0
0
73
0.84
9386--9426
12
3.3
13
80
10
50
26
0
0
73
0.84
9686--9726
20
2.0
20
85
9
55
43
4
0
51
1.23
9812--9844
12
2.8
12
90
4
50
30
3
0
66
1.06
9759--9853
17
5.8
17
71
15
74
34
1
0
64
1.01
11811--11901
31
3.0
31
85
4
105
41
1
10
46
1.46
11833--11901
31
2.3
31
92
2
113
46
1
7
44
1.40
12548--12590
17
2.5
17
76
0
50
46
4
0
48
1.22
13514--13553
8
5.0
8
82
11
55
70
0
0
30
0.88
14484--14542
4
15.0
4
75
16
52
27
0
3
69
1.04
18486--18518
15
2.1
16
94
5
59
39
0
0
60
0.97
18524--18560
16
2.1
19
85
14
53
37
2
0
59
1.12
20542--20582
14
3.1
14
77
22
52
31
4
12
51
1.60

Tables:   1

The End!