Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1314
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28625
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Found at i:172 original size:16 final size:16
Alignment explanation
Indices: 151--185 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
141 GTACAAAACA
151 AAACAAAAAAATAAAT
1 AAACAAAAAAATAAAT
**
167 AAACAAATGAATAAAT
1 AAACAAAAAAATAAAT
183 AAA
1 AAA
186 TAATAAGCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (16 bp):
AAACAAAAAAATAAAT
Found at i:2496 original size:78 final size:76
Alignment explanation
Indices: 2232--2512 Score: 228
Period size: 78 Copynumber: 3.6 Consensus size: 76
2222 ATATAAAAAT
* * *
2232 GGGGTTGGAGCATCCCCGATGGTGAAAAATCGATGTTTTGAAAATAAATCCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGAT-TTTTG-AAATAAA-CTGGGGTTGGAGTATC
** * *
2297 CGTTTC--GAATAAT
63 C-CCTCAAAAATAAC
** * * * *
2310 GGGGTTGGAGTATCCCCGATTAT-GAAAATTGATTTTCAGAAATAAAATCGAGGTTGGAGTATCC
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATTTT-TGAAATAAACT-GGGGTTGGAGTATCC
2374 CCTCAAAAATAAC
64 CCTCAAAAATAAC
* * * * ** * *
2387 AGGGTAGGAGTATCCCCTATTGCAGATAATCGATTTTTGGAAATTAAACTGGGGTTGGAATATCC
1 GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATTTTT-GAAA-TAAACTGGGGTTGGAGTATCC
*
2452 CCTCAAAAACAAC
64 CCTCAAAAATAAC
*
2465 GGGGTTTGGAGTAT-CCCGATGGTGGAAAATCGGTATTTTAGAAATAAA
1 GGGG-TTGGAGTATCCCCGATGGTGGAAAATC-G-ATTTTTGAAATAAA
2513 AAACATGAAT
Statistics
Matches: 160, Mismatches: 33, Indels: 20
0.75 0.15 0.09
Matches are distributed among these distances:
75 2 0.01
76 24 0.15
77 32 0.20
78 79 0.49
79 18 0.11
80 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (76 bp):
GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATTTTTGAAATAAACTGGGGTTGGAGTATCCCC
TCAAAAATAAC
Found at i:4820 original size:51 final size:50
Alignment explanation
Indices: 4746--4857 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 50
4736 AAACATGCTA
*
4746 AATGT-TCGATACATTGAGAAATGTATCGATACATCTGGGTAAAACCCAG
1 AATGTATCGATACAATGAGAAATGTATCGATACATCTGGGTAAAACCCAG
4795 AATGTAATCGATACAATGA-ATAATGTATCGATACATCTGGGTAAAACCCAG
1 AATGT-ATCGATACAATGAGA-AATGTATCGATACATCTGGGTAAAACCCAG
4846 AATGTATCGATA
1 AATGTATCGATA
4858 TAAATTGGGA
Statistics
Matches: 59, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
49 5 0.08
50 8 0.14
51 46 0.78
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (50 bp):
AATGTATCGATACAATGAGAAATGTATCGATACATCTGGGTAAAACCCAG
Found at i:6476 original size:20 final size:20
Alignment explanation
Indices: 6448--6522 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
6438 TCATACCCTG
6448 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
6468 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
6488 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
6508 ATGTATCGATACATT
1 ATGTATCGATACATT
6523 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:6515 original size:40 final size:39
Alignment explanation
Indices: 6448--6525 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
6438 TCATACCCTG
* *
6448 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
6488 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
6526 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:7460 original size:23 final size:23
Alignment explanation
Indices: 7433--7484 Score: 97
Period size: 22 Copynumber: 2.3 Consensus size: 23
7423 AGCCTTTGAC
7433 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
7456 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
7478 CATGCAT
1 CATGCAT
7485 ATTTAACATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.60
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:10815 original size:4 final size:4
Alignment explanation
Indices: 10808--10834 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
10798 GATGTTCATT
10808 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
10835 TGCTATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:20600 original size:25 final size:24
Alignment explanation
Indices: 20560--20608 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
20550 TCCTTTACAC
20560 CCAAAAAAAAAAACAAAAAAAAAA
1 CCAAAAAAAAAAACAAAAAAAAAA
20584 CCAAAACAAAAAAACAAAAAAAAAA
1 CCAAAA-AAAAAAACAAAAAAAAAA
20609 GAAAAAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (24 bp):
CCAAAAAAAAAAACAAAAAAAAAA
Found at i:20614 original size:25 final size:24
Alignment explanation
Indices: 20562--20615 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
20552 CTTTACACCC
20562 AAAAAAAAAAACAAAAAAAAAACCA
1 AAAAAAAAAAACAAAAAAAAAA-CA
* *
20587 AAACAAAAAAACAAAAAAAAAAGA
1 AAAAAAAAAAACAAAAAAAAAACA
20611 AAAAA
1 AAAAA
20616 TAGCAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAAACAAAAAAAAAACA
Found at i:20625 original size:1 final size:1
Alignment explanation
Indices: 20562--20615 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
20552 CTTTACACCC
* ** * * *
20562 AAAAAAAAAAACAAAAAAAAAACCAAAACAAAAAAACAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
20616 TAGCAAAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:20625 original size:12 final size:12
Alignment explanation
Indices: 20561--20608 Score: 78
Period size: 12 Copynumber: 3.9 Consensus size: 12
20551 CCTTTACACC
20561 CAAAAAAAAAAA
1 CAAAAAAAAAAA
*
20573 CAAAAAAAAAAC
1 CAAAAAAAAAAA
20585 CAAAACAAAAAAA
1 CAAAA-AAAAAAA
20598 CAAAAAAAAAA
1 CAAAAAAAAAA
20609 GAAAAAATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
12 22 0.67
13 11 0.33
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:21884 original size:29 final size:29
Alignment explanation
Indices: 21842--22812 Score: 1445
Period size: 29 Copynumber: 33.9 Consensus size: 29
21832 AATGTTCATC
21842 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
**
21871 CCTTTCAAAGCCCACAAACCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
21900 CTTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
21929 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
21957 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
21986 CTTTTCAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22015 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22043 CCTTTCAAAGCCCACAACTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22071 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22100 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22129 CTTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
22158 CTTTTCAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
22187 CTTTTCAAAGCCCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22215 CCTTTCAAAGCCCACAAGTCAGTGGCACC
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22244 CCTTTCAAAGCCCACAACTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22272 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22301 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * *
22330 CTTTTTAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
22359 CTTTTCAAAGCCCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22387 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22416 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
22445 CTTTTCAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22474 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22502 CCTTTCAAAGCCCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22530 CCTTTCAAAGCCCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22558 CCTTTCAGAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
22586 CCTTTCGAGGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * * *
22614 CATTGCGAAGCCCACAATTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22643 -CTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22670 CCTTTTAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
22699 -CTTTCAAAGCCCACAAGTCAGTGGCA-T
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
22726 CCTTTCAAAGCCCACGAGTTAGTGGCA-T
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
22754 TCTTTCAAAGCCCACGCAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCA--CAAGTCAGTGGCACT
* *
22784 CCTTTTAAAGCCCATGCAAGTCAATGGCA
1 CCTTTCAAAGCCCA--CAAGTCAGTGGCA
22813 ACCCTTTTCA
Statistics
Matches: 873, Mismatches: 57, Indels: 23
0.92 0.06 0.02
Matches are distributed among these distances:
27 1 0.00
28 400 0.46
29 436 0.50
30 36 0.04
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (29 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCACT
Found at i:21990 original size:86 final size:86
Alignment explanation
Indices: 21844--22824 Score: 1460
Period size: 86 Copynumber: 11.4 Consensus size: 86
21834 TGTTCATCCC
** *
21844 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAACCAGTGGCACTCTTTTCAAA
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAA
21909 GCCCACAAGTCAGTGGCACTCT
65 GCCCACAAGTCAGTGGCACTCT
*
21931 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
*
21996 CCCACAAATCAGTGGCACTCT
66 CCCACAAGTCAGTGGCACTCT
*
22017 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAACTCAGTGGCAC-CCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
*
22081 CCCACAAGTCAGTGGCACTCC
66 CCCACAAGTCAGTGGCACTCT
* *
22102 TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAA
*
22167 GCCCACAAATCAGTGGCACTCT
65 GCCCACAAGTCAGTGGCACTCT
* *
22189 TTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
* *
22254 CCCACAACTCAGTGGCAC-CC
66 CCCACAAGTCAGTGGCACTCT
* *
22274 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTTAAA
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAA
*
22339 GCCCACAAATCAGTGGCACTCT
65 GCCCACAAGTCAGTGGCACTCT
*
22361 TTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
22426 CCCACAAGTCAGTGGCACTCT
66 CCCACAAGTCAGTGGCACTCT
* *
22447 TTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAA
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAA
* *
22511 GCCCACAAGTTAGTGGCAC-CC
65 GCCCACAAGTCAGTGGCACTCT
* * * *
22532 TTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAGAGCCCACAAGTCAGTGGCAC-CCTTTCGAGG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
*
22596 CCCACAAGTCAGTGGCAC-CA
66 CCCACAAGTCAGTGGCACTCT
* * * * *
22616 TTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTTAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
22680 CCCACAAGTCAGTGGCACTC-
66 CCCACAAGTCAGTGGCACTCT
* * * *
22700 TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTAGTGGCA-TTCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
*
22764 CCCACGCAAGTCAGTGGCACCCT
66 CCCA--CAAGTCAGTGGCACTCT
*
22787 TTT-AAAGCCCATGCAAGTCAATGGCAACCCTTTTCAAA
1 TTTCAAAGCCCA--CAAGTCAGTGGC-ACCC-TTTCAAA
22825 TCACCACTGT
Statistics
Matches: 818, Mismatches: 62, Indels: 25
0.90 0.07 0.03
Matches are distributed among these distances:
84 183 0.22
85 106 0.13
86 373 0.46
87 135 0.17
88 11 0.01
89 3 0.00
90 7 0.01
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (86 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAG
CCCACAAGTCAGTGGCACTCT
Found at i:23366 original size:20 final size:20
Alignment explanation
Indices: 23338--23412 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
23328 TCATACCCTG
23338 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
23358 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
23378 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
23398 ATGTATCGATACATT
1 ATGTATCGATACATT
23413 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:23405 original size:40 final size:39
Alignment explanation
Indices: 23338--23415 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
23328 TCATACCCTG
* *
23338 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
23378 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
23416 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:24350 original size:23 final size:23
Alignment explanation
Indices: 24323--24374 Score: 97
Period size: 22 Copynumber: 2.3 Consensus size: 23
24313 AGCCTTTGAC
24323 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
24346 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
24368 CATGCAT
1 CATGCAT
24375 ATTTAACATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.60
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Done.