genome.fa.s1316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1316
Parameters: 2 7 7 80 10 50 1000
Length:  42017

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2194--2241	20	2.4	20	85	0	69	60	0	0	39	0.97
2209--2272	17	3.8	17	72	12	51	56	3	1	39	1.25
2208--2272	35	1.9	33	84	12	87	56	3	1	38	1.24
3037--3111	5	15.0	5	73	20	52	42	1	1	54	1.17
5331--5355	10	2.5	10	100	0	50	20	32	20	28	1.97
5378--5403	13	2.0	13	100	0	52	38	15	15	30	1.88
5355--5424	34	2.1	33	91	2	113	31	12	18	37	1.89
10188--10308	52	2.3	52	94	0	215	28	17	18	35	1.93
10188--10328	52	2.7	52	83	4	194	29	16	19	34	1.93
10317--10341	13	1.9	13	100	0	50	36	16	16	32	1.90
10328--10407	21	3.8	21	100	0	160	33	10	17	38	1.83
10447--10471	13	1.9	13	100	0	50	32	16	16	36	1.90
10425--10491	33	2.0	33	88	0	98	40	13	11	34	1.81
11213--11339	67	1.9	68	83	1	166	38	13	24	23	1.91
11342--11576	49	5.1	44	81	10	267	31	17	24	25	1.97
11352--11583	43	5.0	45	82	10	283	30	18	24	26	1.98
11343--11571	92	2.5	92	95	0	404	31	18	23	26	1.97
11571--11642	33	2.2	33	92	0	117	23	15	36	25	1.94
11625--11980	34	10.3	35	80	10	376	34	11	32	21	1.89
11625--11980	71	5.1	71	82	9	366	34	11	32	21	1.89
11960--12072	31	3.7	31	86	3	140	25	17	30	26	1.98
11992--12072	31	2.6	31	94	0	144	25	18	28	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13026--13060	11	3.2	11	83	0	52	0	0	14	85	0.59
20279--20399	52	2.3	52	94	0	215	28	17	18	35	1.93
20279--20419	52	2.7	52	83	4	194	29	16	19	34	1.93
20408--20432	13	1.9	13	100	0	50	36	16	16	32	1.90
20496--20520	13	1.9	13	100	0	50	32	16	16	36	1.90
20474--20540	33	2.0	33	88	0	98	40	13	11	34	1.81
21186--21228	20	2.1	20	82	4	50	6	30	44	18	1.76
21870--21900	8	3.8	8	95	4	53	61	25	0	12	1.32
27828--27896	33	2.1	33	86	5	95	34	13	18	33	1.90
30474--30509	2	18.0	2	100	0	72	50	0	0	50	1.00
30821--30846	1	26.0	1	100	0	52	0	0	100	0	0.00
32310--32357	15	3.1	15	82	8	53	62	0	0	37	0.95
32312--32356	23	2.0	23	81	0	54	62	0	0	37	0.96
34296--34430	2	77.5	2	72	26	112	45	0	0	54	1.05
34291--34437	36	4.0	37	81	14	171	44	0	0	55	1.04
34293--34444	7	21.7	7	73	20	106	44	0	0	54	1.09
34293--34444	12	12.4	12	77	18	122	44	0	0	54	1.09
34445--34479	17	1.9	19	88	11	56	5	5	11	77	1.12
34445--34479	18	2.0	17	88	5	52	5	5	11	77	1.12
37831--37900	20	3.6	19	77	9	70	32	10	14	42	1.78

Tables:   1

The End!