Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1318
Parameters: 2 7 7 80 10 50 1000
Length:  97761

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4871--4906
2
18.0
2
100
0
72
50
0
0
50
1.00
8798--8828
2
15.5
2
100
0
62
0
48
0
51
1.00
8828--8864
2
18.5
2
100
0
74
48
0
0
51
1.00
12090--12134
3
15.0
3
100
0
90
66
0
0
33
0.92
12759--12794
18
2.1
17
89
5
54
66
2
2
27
1.19
18060--18100
3
13.7
3
100
0
82
34
0
0
65
0.93
24822--24862
17
2.4
18
80
12
50
29
0
0
70
0.87
37310--37631
165
2.0
165
93
1
556
46
8
13
31
1.73
42172--42225
20
2.6
21
88
2
74
33
16
9
40
1.80
42573--42607
16
2.3
15
90
5
52
45
5
11
37
1.64
43193--43240
16
3.1
16
79
11
55
47
0
0
52
1.00
43191--43229
12
3.4
11
82
10
51
51
0
0
48
1.00
45076--45118
21
2.0
21
86
0
59
25
32
0
41
1.56
45176--45240
27
2.3
27
79
12
69
24
6
9
60
1.50
45546--45586
21
2.0
21
85
9
57
39
12
9
39
1.76
45620--45697
20
3.8
20
78
10
70
39
15
15
29
1.88
45668--45803
53
2.5
53
93
1
227
37
19
16
26
1.93
45827--45857
10
3.1
10
90
0
53
22
29
6
41
1.78
45845--45900
21
2.6
22
94
5
105
26
25
10
37
1.88
52264--52384
39
3.2
39
68
9
115
28
8
19
43
1.79
52213--52450
75
3.2
75
87
1
352
32
8
18
40
1.80
52692--52792
47
2.1
47
100
0
202
23
28
21
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55490--55562
21
3.4
22
81
5
87
39
13
2
43
1.59
55514--55685
90
1.9
90
85
4
240
39
14
6
38
1.73
57387--57444
22
2.7
21
84
10
64
37
1
1
58
1.18
57946--57981
18
2.1
18
89
5
56
44
0
11
44
1.39
58204--58253
16
3.1
16
83
11
66
30
0
0
70
0.88
58207--58240
4
8.8
4
93
6
61
23
0
0
76
0.79
58976--59035
28
2.1
28
90
0
93
48
0
3
48
1.18
59379--59423
17
2.6
18
86
6
58
48
0
0
51
1.00
61161--61241
40
2.0
40
95
0
144
49
13
6
30
1.67
61808--61875
30
2.2
30
89
2
100
39
7
5
47
1.56
62395--62428
8
4.0
8
88
11
50
47
0
5
47
1.26
62395--62428
17
2.0
17
88
11
52
47
0
5
47
1.26
64735--64786
18
2.9
18
77
8
61
71
0
0
28
0.87
64734--64794
29
2.2
29
75
13
67
67
0
0
32
0.91
64766--64857
33
2.7
36
78
13
113
57
0
0
42
0.98
64792--64879
27
3.2
27
80
11
90
52
1
1
45
1.15
64782--64881
9
11.2
9
70
19
68
54
1
1
44
1.13
64738--64857
8
14.9
8
70
22
58
60
0
0
40
0.97
70250--70362
57
2.0
57
96
0
208
45
16
10
27
1.81
72999--73037
20
2.1
18
85
9
51
51
0
7
41
1.31
73568--73612
11
4.1
11
88
0
63
33
0
2
64
1.06
74284--74438
85
1.8
84
84
1
211
50
5
8
34
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74631--74675
23
1.9
24
86
4
65
4
31
2
62
1.27
76215--76276
4
15.5
4
93
0
88
50
6
0
43
1.28
80296--80331
2
18.0
2
91
0
54
50
44
2
2
1.31
82087--82120
4
8.5
4
100
0
68
73
0
0
26
0.83
82704--82746
22
2.0
22
86
9
61
34
11
9
44
1.73
82779--82821
15
2.9
14
80
10
50
39
0
9
51
1.34
87225--87299
20
3.6
20
75
10
87
37
13
18
30
1.89
87225--87320
43
2.3
43
96
3
178
40
12
17
29
1.86
87359--87384
13
2.0
13
100
0
52
38
15
15
30
1.88
87341--87403
32
2.0
32
87
6
92
39
15
15
28
1.89
91448--91478
15
2.1
15
93
0
53
48
16
22
12
1.80
93501--93579
20
3.7
21
75
15
72
26
13
15
44
1.84
93566--93604
13
3.0
13
96
0
69
30
17
15
35
1.91
96047--96119
20
3.6
20
81
3
101
35
13
19
31
1.91
96065--96140
21
3.7
21
80
3
100
42
11
17
28
1.84
96047--96140
41
2.3
41
98
0
179
39
12
18
29
1.88
96180--96205
13
2.0
13
100
0
52
38
15
15
30
1.88

Tables:   1

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