Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1319
Parameters: 2 7 7 80 10 50 1000
Length:  52798

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6739--6813
20
3.8
19
78
7
87
41
12
13
33
1.81
6736--6813
40
2.0
39
89
2
120
41
12
12
33
1.82
7301--7346
22
2.1
22
100
0
92
21
13
36
28
1.91
7434--8512
29
37.0
29
85
6
1236
21
18
32
27
1.97
7446--8513
146
7.3
144
85
6
1282
21
18
32
27
1.97
9731--9793
10
5.6
10
77
17
54
1
3
11
84
0.81
9756--9793
15
2.6
15
95
4
69
0
0
10
89
0.49
23625--23699
20
3.8
19
78
7
87
41
12
13
33
1.81
23622--23699
40
2.0
39
89
2
120
41
12
12
33
1.82
25054--25141
40
2.2
40
95
0
167
23
21
23
30
1.99
27871--27943
8
9.2
8
77
5
62
83
12
2
1
0.82
27869--27952
11
7.5
12
75
16
67
83
13
2
1
0.81
27870--27940
21
3.3
20
83
12
88
84
11
2
1
0.79
27872--27953
27
3.0
27
79
12
96
81
13
3
1
0.88
27868--27952
39
2.2
40
82
6
111
82
14
2
1
0.83
29379--29611
28
8.2
28
87
7
312
31
30
16
21
1.95
29674--29994
49
6.6
49
77
7
280
23
25
17
33
1.97
29732--29954
101
2.2
100
83
4
270
23
26
17
33
1.96
34523--34552
9
3.3
9
100
0
60
33
0
0
66
0.92
34967--35059
34
2.7
34
80
3
107
55
2
6
35
1.37
36890--36931
22
2.0
22
86
9
61
54
0
2
42
1.13
39042--39080
13
3.2
12
82
10
53
69
2
5
23
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40087--40123
17
2.2
16
90
4
56
32
0
0
67
0.91
43065--43116
20
2.5
21
73
14
54
19
11
23
46
1.82
46295--46472
88
2.0
88
97
0
338
33
15
16
34
1.90
47394--47463
28
2.6
27
75
13
72
27
1
8
62
1.32
49355--49379
13
1.9
13
100
0
50
36
8
16
40
1.77
49335--49431
32
3.0
32
90
1
149
36
10
16
37
1.83
49387--49411
13
1.9
13
100
0
50
36
16
16
32
1.90
49333--49434
19
6.1
18
70
28
82
35
9
16
38
1.82
49473--49497
13
1.9
13
100
0
50
32
16
16
36
1.90
49506--49634
52
2.5
52
94
0
222
35
17
17
29
1.93
51759--51809
27
2.0
26
81
11
61
25
41
15
17
1.89

Tables:   1

The End!