Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold133
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2564099
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 17052 characters in sequence are not A, C, G, or T
File 13 of 17
Found at i:1743774 original size:50 final size:50
Alignment explanation
Indices: 1743711--1743820 Score: 184
Period size: 50 Copynumber: 2.2 Consensus size: 50
1743701 AATGGGCGAT
* * *
1743711 CGTAATTGTTGACTATTCTTCATCAACCTTTGACAATCGAGAAAGATGGC
1 CGTAATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAAAGATGCC
*
1743761 CGTTATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAAAGATGCC
1 CGTAATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAAAGATGCC
1743811 CGTAATTGTT
1 CGTAATTGTT
1743821 TATTCTAAGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (50 bp):
CGTAATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAAAGATGCC
Found at i:1745069 original size:31 final size:31
Alignment explanation
Indices: 1745026--1745093 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
1745016 TGATGTCTGG
*
1745026 CTTTTAGATTTAGTGGCTATGTGGCACATGA
1 CTTTTAGATTTAGTGGCTACGTGGCACATGA
*
1745057 CTTTTAGGTTTAGTGGCTACGTGGCACATGA
1 CTTTTAGATTTAGTGGCTACGTGGCACATGA
1745088 CTTTTA
1 CTTTTA
1745094 AAAGAGAGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.40
Consensus pattern (31 bp):
CTTTTAGATTTAGTGGCTACGTGGCACATGA
Found at i:1745788 original size:20 final size:20
Alignment explanation
Indices: 1745763--1745876 Score: 162
Period size: 20 Copynumber: 5.7 Consensus size: 20
1745753 TGAACCCAGA
1745763 TGTATCGATACATTTTG-T-AT
1 TGTATCGATACA--TTGCTCAT
1745783 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
1745803 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
1745823 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
* *
1745843 TGTATCGATACATT-TTACAA
1 TGTATCGATACATTGCT-CAT
1745863 TGTATCGATACATT
1 TGTATCGATACATT
1745877 CAGGCATTTT
Statistics
Matches: 89, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
18 3 0.03
19 2 0.02
20 84 0.94
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:1748256 original size:51 final size:51
Alignment explanation
Indices: 1748201--1748312 Score: 145
Period size: 51 Copynumber: 2.2 Consensus size: 51
1748191 TCCCTGTTCC
** * *
1748201 ATTTCCAAAACATCAATTT-CTCTTAATTGGGGATACTCCAACTTCGATTTT
1 ATTTCCAAAACATCAATTTAC-CGCAATCGGGGATACTCCAACTCCGATTTT
* * *
1748252 ATTTCTAAAGCATCGATTTACCGCAATCGGGGATACTCCAACTCCGATTTT
1 ATTTCCAAAACATCAATTTACCGCAATCGGGGATACTCCAACTCCGATTTT
1748303 ATTTCCAAAA
1 ATTTCCAAAA
1748313 TACAAAATTT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 50 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (51 bp):
ATTTCCAAAACATCAATTTACCGCAATCGGGGATACTCCAACTCCGATTTT
Found at i:1748365 original size:27 final size:28
Alignment explanation
Indices: 1748334--1748401 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
1748324 CACAATTGGA
1748334 GATACTCCAACCC-GTTATTTCATC-A-GG
1 GATACTCCAACCCTGTTATTT--TCGAGGG
1748361 GATACTCCAACCCTGTTATTTTCGAGGG
1 GATACTCCAACCCTGTTATTTTCGAGGG
1748389 GATACTCCAACCC
1 GATACTCCAACCC
1748402 CGGCTTTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
26 2 0.05
27 14 0.37
28 22 0.58
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (28 bp):
GATACTCCAACCCTGTTATTTTCGAGGG
Found at i:1748498 original size:28 final size:29
Alignment explanation
Indices: 1748437--1748505 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
1748427 TTTCATAATT
*
1748437 GGGGGTACTCCAATCTCGTTATGTCATCGA
1 GGGGATACTCCAATCTCGTTATGTCA-CGA
*
1748467 --GGATACTCCAATCTCGTTATTTC-CGA
1 GGGGATACTCCAATCTCGTTATGTCACGA
1748493 GGGGATACTCCAA
1 GGGGATACTCCAA
1748506 CCCTGATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 3 0.09
28 32 0.91
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (29 bp):
GGGGATACTCCAATCTCGTTATGTCACGA
Found at i:1748517 original size:107 final size:105
Alignment explanation
Indices: 1748280--1748587 Score: 286
Period size: 107 Copynumber: 2.9 Consensus size: 105
1748270 TACCGCAATC
*
1748280 GGGGATACTCCAACTCCGATTTTATTTCCAAAATACAAAATTTTCACAATTGGAGATACTCCAAC
1 GGGGATACTCCAAC-CCGATTTTATATCCAAAATACAAAATTTTCACAATTGGAGATACTCCAAC
* *
1748345 CCGTTATTTCATCAGGGATACTCCAACCCTGTTATTTTCGA
65 CCGTTATGTCATCAGGGATACTCCAACCCTGTTATTTCCGA
** * *** * * * *
1748386 GGGGATACTCCAACCCCGGCTTTATATCTAAAATATTGACTTTTCATAATTGGGGGTACTCCAAT
1 GGGGATACTCCAA-CCCGATTTTATATCCAAAATACAAAATTTTCACAATTGGAGATACTCCAA-
* *
1748451 CTCGTTATGTCATC-GAGGATACTCCAA-TCTCGTTATTTCCGA
64 CCCGTTATGTCATCAG-GGATACTCCAACCCT-GTTATTTCCGA
* * * * *
1748493 GGGGATACTCCAACCCTGATTTTATTTCCAAAACAC-CAATTTTCTATAATCAGG-GATACTCCA
1 GGGGATACTCCAACCC-GATTTTATATCCAAAATACAAAATTTTC-ACAAT-TGGAGATACTCCA
*
1748556 ACCCTGTTATTTC--CAAGGGGATACTCCAACCC
63 ACCC-GTTATGTCATC-A-GGGATACTCCAACCC
1748588 CGATTTTATT
Statistics
Matches: 162, Mismatches: 28, Indels: 22
0.76 0.13 0.10
Matches are distributed among these distances:
105 1 0.01
106 65 0.40
107 92 0.57
108 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (105 bp):
GGGGATACTCCAACCCGATTTTATATCCAAAATACAAAATTTTCACAATTGGAGATACTCCAACC
CGTTATGTCATCAGGGATACTCCAACCCTGTTATTTCCGA
Found at i:1748598 original size:79 final size:79
Alignment explanation
Indices: 1748467--1748761 Score: 396
Period size: 79 Copynumber: 3.7 Consensus size: 79
1748457 ATGTCATCGA
* * * *
1748467 GGATACTCCAA-TCTCGTTATTTCCGAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACCA
1 GGATACTCCAACCCT-GTTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAATACCA
1748531 ATTTTCTATAATCAG
65 ATTTTCTATAATCAG
* * *
1748546 GGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAA
1 GGATACTCCAACCCTGTTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAATACCAA
1748611 TTTTCTATAATCAG
66 TTTTCTATAATCAG
* * * *
1748625 GGATACTCCAACCCTGTTATTTCCGAGGAGATACTTCAACCTCGATTTTACTTCCAAAATACTAA
1 GGATACTCCAACCCTGTTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAATACCAA
* *
1748690 TTTTTTATAATCGG
66 TTTTCTATAATCAG
* * * * *
1748704 GGATACTCCAACCCCGTTATTTTCGA-GAGATACTCTAACCTCGGTTTTATTTCTCAAA
1 GGATACTCCAACCCTGTTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTC-CAAA
1748762 CATCGATTTT
Statistics
Matches: 194, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
78 23 0.12
79 169 0.87
80 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.34
Consensus pattern (79 bp):
GGATACTCCAACCCTGTTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAATACCAA
TTTTCTATAATCAG
Found at i:1748773 original size:79 final size:79
Alignment explanation
Indices: 1748462--1748797 Score: 392
Period size: 79 Copynumber: 4.3 Consensus size: 79
1748452 TCGTTATGTC
* * * *
1748462 ATCGAGGATACTCCAATCTCGTTATTTCCGAGGGGATACTCCAACC-CTGATTTTATTTCCAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCTC-GATTTTATTTCCAAAA
*
1748526 CACCAATTTTCTATA
65 TACCAATTTTCTATA
* * * * * *
1748541 ATCAGGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTTCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCTCGATTTTATTTCCAAAAT
1748606 ACCAATTTTCTATA
66 ACCAATTTTCTATA
* * * *
1748620 ATCAGGGATACTCCAACCCTGTTATTTCCGAGGAGATACTTCAACCTCGATTTTACTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCTCGATTTTATTTCCAAAAT
* *
1748685 ACTAATTTTTTATA
66 ACCAATTTTCTATA
* * *
1748699 ATCGGGGATACTCCAACCCCGTTATTTTCGA-GAGATACTCTAACCTCGGTTTTATTTCTCAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCTCGATTTTATTTC-CAAA-
* * **
1748763 AT--CGATTTTTTGCA
64 ATACCAATTTTCTATA
*
1748777 ATCGGGGATACTTCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1748798 GTTTTATTTC
Statistics
Matches: 226, Mismatches: 28, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
78 51 0.23
79 172 0.76
80 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCTCGATTTTATTTCCAAAAT
ACCAATTTTCTATA
Found at i:1748832 original size:51 final size:51
Alignment explanation
Indices: 1748732--1749057 Score: 218
Period size: 51 Copynumber: 6.3 Consensus size: 51
1748722 ATTTTCGAGA
* * * ***
1748732 GATACTCTAACCTCGGTTTTATTTCTC-AAACATCGATTTTTTGCAATCGGG
1 GATACTCCAACCCCGGTTTTATTTC-CAAAACATCAATTTTCCACAATCGGG
* *
1748783 GATACTTCAACCCCGGTTTTATTTCCAAAACATCAATTTTCCACCATCGGG
1 GATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTCCACAATCGGG
* * * * * *
1748834 GGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCACGT-TATTTT---CGA--GGG
1 GATACTCCAACCCCGGT-TTT-AT------T--TCCAA-AACATCAATTTTCCACAATCGGG
* * * * *
1748890 GATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCGGG
1 GATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTCCACAATCGGG
* * * * *
1748941 GATACTCCAACTCCGATTTTATTTCTAAAACACCAA-TTTCTCATAATCGGG
1 GATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTC-CACAATCGGG
** * * *
1748992 GATACTCCAACCCCGGCCTTATTTCTAAAGCATCAATTTTCCATAATCGGG
1 GATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTCCACAATCGGG
1749043 GATACTCCAACCCCG
1 GATACTCCAACCCCG
1749058 TTATTTTCGA
Statistics
Matches: 221, Mismatches: 34, Indels: 40
0.75 0.12 0.14
Matches are distributed among these distances:
45 1 0.00
46 9 0.04
48 1 0.00
49 2 0.01
50 4 0.02
51 156 0.71
52 7 0.03
53 2 0.01
54 2 0.01
55 3 0.01
56 18 0.08
58 2 0.01
59 1 0.00
61 10 0.05
62 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (51 bp):
GATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTCCACAATCGGG
Found at i:1748867 original size:28 final size:28
Alignment explanation
Indices: 1748827--1748904 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
1748817 AATTTTCCAC
*
1748827 CATCGGGGGTACTCCAACCCCGTTATTT
1 CATCGGGGATACTCCAACCCCGTTATTT
* *
1748855 CATCGGGGATACTCCAATCACGTTATTT
1 CATCGGGGATACTCCAACCCCGTTATTT
1748883 --TCGAGGGGATACTCCAACCCCG
1 CATC--GGGGATACTCCAACCCCG
1748905 ATTTTATTTC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 2 0.05
28 41 0.95
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (28 bp):
CATCGGGGATACTCCAACCCCGTTATTT
Found at i:1748990 original size:158 final size:157
Alignment explanation
Indices: 1748699--1749006 Score: 411
Period size: 158 Copynumber: 2.0 Consensus size: 157
1748689 ATTTTTTATA
* * * * *
1748699 ATCGGGGATACTCCAACCCCGTTATTTTCGAGAGATACTCTAACCTCGGTTTTATTTCTCAAACA
1 ATCGGGGATACTCCAACCACGTTATTTTCGAGAGATACTCCAACCCCGATTTTATTTCTAAAACA
* * ** * * * *
1748764 TCGATTTTTTGCAATCGGGGATACTTCAACCCCGGTTTTATTTCCAAAACATCAATTTTCCACCA
66 CCAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAA
*
1748829 TCGGGGGTACTCCAACCCCGTTATTTC
131 TCGGGGATACTCCAACCCCGTTATTTC
* * *
1748856 ATCGGGGATACTCCAATCACGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCACGTTATTTTCGA-GAGATACTCCAACCCCGATTTTATTTCTAAAAC
* * *
1748921 ACCAATTTTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAA-TTTCTCAT
65 ACCAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTC-CAC
1748985 AATCGGGGATACTCCAACCCCG
129 AATCGGGGATACTCCAACCCCG
1749007 GCCTTATTTC
Statistics
Matches: 129, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
157 33 0.26
158 96 0.74
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (157 bp):
ATCGGGGATACTCCAACCACGTTATTTTCGAGAGATACTCCAACCCCGATTTTATTTCTAAAACA
CCAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAA
TCGGGGATACTCCAACCCCGTTATTTC
Found at i:1761436 original size:1 final size:1
Alignment explanation
Indices: 1761432--1761496 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
1761422 CTTTTTTTTT
* * * * * * * *
1761432 AAAAAAATAAAAAAACAAAAAAAAAACAAAAAAACAAAAACAAAAAAAACAAAGAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1761497 GAACCTACTT
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.88, C:0.08, G:0.03, T:0.02
Consensus pattern (1 bp):
A
Found at i:1761456 original size:19 final size:18
Alignment explanation
Indices: 1761432--1761496 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 18
1761422 CTTTTTTTTT
*
1761432 AAAAAAATAAAAAAACAA
1 AAAAAAAAAAAAAAACAA
1761450 AAAAAAAACAAAAAAACAA
1 AAAAAAAA-AAAAAAACAA
* *
1761469 AAACAAAAAAAACAAAGAA
1 AAA-AAAAAAAAAAAACAA
1761488 AAAAGAAAA
1 AAAA-AAAA
1761497 GAACCTACTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 8 0.20
19 28 0.68
20 5 0.12
ACGTcount: A:0.88, C:0.08, G:0.03, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAAAAAAACAA
Found at i:1762552 original size:29 final size:29
Alignment explanation
Indices: 1762520--1762610 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
1762510 GAGCAGGGCG
1762520 CCTTTCAAAGCCCACAAAAGTTGGTGGCA
1 CCTTTCAAAGCCCACAAAAGTTGGTGGCA
* * ** * *
1762549 CCTTTC--AGTCCTCAAAGAG-CAG-GACG
1 CCTTTCAAAGCCCACAAA-AGTTGGTGGCA
*
1762575 CCTTTTAAAGCCCACAAAAGTTGGTGGCA
1 CCTTTCAAAGCCCACAAAAGTTGGTGGCA
1762604 CCTTTCA
1 CCTTTCA
1762611 GTCCTCAAAG
Statistics
Matches: 43, Mismatches: 14, Indels: 10
0.64 0.21 0.15
Matches are distributed among these distances:
26 7 0.16
27 11 0.26
28 11 0.26
29 14 0.33
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (29 bp):
CCTTTCAAAGCCCACAAAAGTTGGTGGCA
Found at i:1762565 original size:55 final size:55
Alignment explanation
Indices: 1762495--1762978 Score: 452
Period size: 55 Copynumber: 8.6 Consensus size: 55
1762485 CTCCTTTCAC
* * *
1762495 CCTTT-AGTCTTCAAAGAGCAGGGCGCCTTTCAAAGCCCACAAAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1762549 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACAAAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1762604 CCTTTCAGTCCTCAAAGAGTAAGACGCCTTTCAAAGCCCACACAAGTTGGTAGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * *
1762659 TTTTTTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 --CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
1762716 -CTTCCCGGTCCTCAAAGAGTAGGGCGTCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTT-TCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
1762771 -TTTTCCAATCCTCAAAGAGCATGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * * * * * * *
1762826 TTTTTCAGTCCTCAAAGAGCAAGATTCTTTCTCCTTTTAAAGACCACTCGAGTTGGTGGAA
1 CCTTTCAGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1762887 CCTTCCAGTCCTCAAAGAGTAGGACATCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGAC-GC----C-TTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1762948 CTTTTTAGTTCTCAAAGAGCAGGATGCCTTT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTT
1762979 TCCTTTTCTC
Statistics
Matches: 359, Mismatches: 53, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
54 7 0.02
55 207 0.58
56 7 0.02
57 50 0.14
60 2 0.01
61 86 0.24
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1762785 original size:167 final size:165
Alignment explanation
Indices: 1762497--1762846 Score: 479
Period size: 167 Copynumber: 2.1 Consensus size: 165
1762487 CCTTTCACCC
* * *
1762497 TTTAGTCTTCAAAGAGCAGGGCGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTTCAGTCCTC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTCCAGTCCTC
* * *
1762562 AAAGAGCAGGACGCCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAAG
66 AAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAAG
1762627 ACGCCTTTCAAAGCCCACACAAGTTGGTAGCATTTTT
131 ACGCCTTTCAAAGCCCACACAAGTTGGTAGCA--TTT
* * *
1762664 TTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCGGTCCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTT-CCAGTCCT
* * * * *
1762728 CAAAGAGTAGGGCGTCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAATCCTCAAAGAGCA
65 CAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTT-CAATCCTCAAAGAGCA
* * * *
1762792 TGATGCCTTTTAAAGCCCACACAAGTTGGTGGCATTT
129 AGACGCCTTTCAAAGCCCACACAAGTTGGTAGCATTT
*
1762829 TTCAGTCCTCAAAGAGCA
1 TTTAGTCCTCAAAGAGCA
1762847 AGATTCTTTC
Statistics
Matches: 161, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
165 19 0.12
166 6 0.04
167 136 0.84
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (165 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTCCAGTCCTC
AAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAAG
ACGCCTTTCAAAGCCCACACAAGTTGGTAGCATTT
Found at i:1762829 original size:27 final size:28
Alignment explanation
Indices: 1762744--1762829 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 28
1762734 GTAGGGCGTC
1762744 TTTCAAAGCCCACACAAGTTGGTGGCAT
1 TTTCAAAGCCCACACAAGTTGGTGGCAT
* * * * *
1762772 TTTCCAATCCTCA-A-AGAGCATGAT-GCCT
1 TTTCAAAGCC-CACACA-AG-TTGGTGGCAT
1762800 TTT-AAAGCCCACACAAGTTGGTGGCAT
1 TTTCAAAGCCCACACAAGTTGGTGGCAT
1762827 TTT
1 TTT
1762830 TCAGTCCTCA
Statistics
Matches: 42, Mismatches: 10, Indels: 13
0.65 0.15 0.20
Matches are distributed among these distances:
26 5 0.12
27 14 0.33
28 18 0.43
29 5 0.12
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (28 bp):
TTTCAAAGCCCACACAAGTTGGTGGCAT
Found at i:1763092 original size:42 final size:42
Alignment explanation
Indices: 1762976--1763141 Score: 158
Period size: 42 Copynumber: 3.9 Consensus size: 42
1762966 GCAGGATGCC
* * *
1762976 TTTTCCTT-TTCTCCTTTGTCCTCAAAGAGCAGGACACATTTC
1 TTTTCCTTCTT-TCTTTTGTCCTCAAAGAGCAGGACGCATTTG
* * *
1763018 ATTCCCTTCTTTTCCCTTTTGTCTTCAAAGAGCAGGACGCACTTTG
1 TTTTCCTTC-TTT--CTTTTGTCCTCAAAGAGCAGGACGCA-TTTG
*
1763064 TTTTCC-TCTTTCTTTTGTCCTCAAAGAGCATGACGCATTTCG
1 TTTTCCTTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTT-G
* * *
1763106 TTTTCCTTTTTTCCTTTGTCCTCGAAA-AGTAGGACG
1 TTTTCCTTCTTTCTTTTGTCCTC-AAAGAGCAGGACG
1763142 TACTCTTTTT
Statistics
Matches: 102, Mismatches: 14, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
41 3 0.03
42 37 0.36
43 22 0.22
44 8 0.08
45 25 0.25
46 7 0.07
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (42 bp):
TTTTCCTTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTG
Found at i:1763942 original size:20 final size:20
Alignment explanation
Indices: 1763909--1763950 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
1763899 TTTTATCGAT
1763909 TTGCTCATTATATCGATACA
1 TTGCTCATTATATCGATACA
* *
1763929 TTGCTTATTGTATCGATACA
1 TTGCTCATTATATCGATACA
1763949 TT
1 TT
1763951 TTACAATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (20 bp):
TTGCTCATTATATCGATACA
Found at i:1766344 original size:51 final size:51
Alignment explanation
Indices: 1766264--1766428 Score: 174
Period size: 51 Copynumber: 3.2 Consensus size: 51
1766254 ATTTTTCATC
* ** **
1766264 TCGGGGATACTCCAA-TCCCAGTTCCATTTCTAAAACATCAATTTCTCTTAA
1 TCGGGGATACTCCAACTCCGA-TTTTATTTCTAAAACATCAATTTCTCACAA
* * * *
1766315 TCGGGGATACTCCAACTCTGATTTTATTTCTAAAGCATCGATTTAC-CGCAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTT-CTCACAA
* *
1766366 TCGGGGATACTCCAACTCCGATTTTATTT-TCAAAACACCAATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCT-AAAACATCAATTTCTCACAA
*
1766417 TTGGGGATACTC
1 TCGGGGATACTC
1766429 TAACCCTATT
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
50 1 0.01
51 90 0.95
52 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTCTCACAA
Found at i:1766624 original size:107 final size:107
Alignment explanation
Indices: 1766368--1766678 Score: 326
Period size: 107 Copynumber: 2.9 Consensus size: 107
1766358 TACCGCAATC
* **
1766368 GGGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTTTCACAAT-TGGGGATACTCTA
1 GGGGATACTCCAAC-CCTGATTTTATTTTCAAAACACCAATTTTTCATAATCAAGGG-TACTCTA
* *
1766431 ACCCTATTATTTCATCAGGGATACTCCAACCCCGTTATTTCCAA
64 ACCCTGTTATGTCATCAGGGATACTCCAACCCCGTTATTTCCAA
* * * * * ***
1766475 GTGGATACTCCAA-CCTCAGCTTTA-TATCTAAAATATTGATTTTTCATAATCAAGGGTACTCTA
1 GGGGATACTCCAACCCTGA-TTTTATTTTC-AAAACACCAATTTTTCATAATCAAGGGTACTCTA
* * * * *
1766538 ACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTTCGA
64 ACCCTGTTATGTCATCAGGGATACTCCAACCCCGTTATTTCCAA
* *
1766582 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAA-TTTTCTATAATCAAGGATACTCCAA
1 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTTC-ATAATCAAGGGTACTCTAA
* ***
1766646 CCCTGTTATTTCCGAAGGGATACTCCAACCCCG
65 CCCTGTTATGTCATCAGGGATACTCCAACCCCG
1766679 ATTTTACTTC
Statistics
Matches: 162, Mismatches: 35, Indels: 14
0.77 0.17 0.07
Matches are distributed among these distances:
105 2 0.01
106 9 0.06
107 141 0.87
108 10 0.06
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (107 bp):
GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTTCATAATCAAGGGTACTCTAAC
CCTGTTATGTCATCAGGGATACTCCAACCCCGTTATTTCCAA
Found at i:1766782 original size:78 final size:77
Alignment explanation
Indices: 1766551--1766804 Score: 330
Period size: 79 Copynumber: 3.2 Consensus size: 77
1766541 CCGTTATGTC
*
1766551 ATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCTGATTTTATTT-TCAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGATACTCCAACCC-GATTTTATTTCT-AAAA
*
1766615 CACCAATTTTCTATA
63 CACCAATTTTTTATA
** * * * *
1766630 ATCAAGGATACTCCAACCCTGTTATTTCCGAAGGGATACTCCAACCCCGATTTTACTTCCAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTTCG-AGGGATACTCCAA-CCCGATTTTATTTCTAAAAC
*
1766695 ACCAATTTTTTACA
64 ACCAATTTTTTATA
* *
1766709 ATCGGGGATACTCCAACCCCGTTATTTTTGAGGGATACTCCAACCTCGGTTTTATTTCTAAAACA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGATACTCCAACC-CGATTTTATTTCTAAAACA
* *
1766774 TCAATTTTTCATA
65 CCAATTTTTTATA
1766787 ATCGGGGATACTCCAACC
1 ATCGGGGATACTCCAACC
1766805 TCGATTTTAT
Statistics
Matches: 151, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
77 2 0.01
78 57 0.38
79 88 0.58
80 4 0.03
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (77 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGATACTCCAACCCGATTTTATTTCTAAAACAC
CAATTTTTTATA
Found at i:1766800 original size:51 final size:51
Alignment explanation
Indices: 1766740--1767067 Score: 229
Period size: 51 Copynumber: 6.3 Consensus size: 51
1766730 TTATTTTTGA
*
1766740 GGGATACTCCAACCTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCG
1 GGGATACTCCAACCTCGATTTTATTTCTAAAACATCAATTTTTCATAATCG
* * * * *
1766791 GGGATACTCCAACCTCGATTTTATTTCCAAAACATCGATTTTCCATCATTG
1 GGGATACTCCAACCTCGATTTTATTTCTAAAACATCAATTTTTCATAATCG
* * * * ** *
1766842 GGGGTACTCCAACC-C--TGTTATTTCATCGGGGATAC-TCCAATCCCGTTATTTTTGA--G
1 GGGATACTCCAACCTCGATTTTATTTC-T----AAAACAT-CAAT----TT-TTCATAATCG
* * * * *
1766898 GGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTCCACAATCG
1 GGGATACTCCAACCTCGATTTTATTTCTAAAACATCAATTTTTCATAATCG
* * * * *
1766949 AGGATACTCCAA-CTCCGATTTTATTTCCAAAACACCAATTTCTCACAATCG
1 GGGATACTCCAACCT-CGATTTTATTTCTAAAACATCAATTTTTCATAATCG
* *** * **
1767000 AGGATACTCCAACCTCGGCCTTATTTCTAAAGCATTGATTTTTCATAATCG
1 GGGATACTCCAACCTCGATTTTATTTCTAAAACATCAATTTTTCATAATCG
1767051 GGGATACTCCAACCTCG
1 GGGATACTCCAACCTCG
1767068 TTATTTTCGA
Statistics
Matches: 214, Mismatches: 44, Indels: 38
0.72 0.15 0.13
Matches are distributed among these distances:
48 8 0.04
49 2 0.01
50 4 0.02
51 156 0.73
52 3 0.01
53 6 0.03
54 6 0.03
56 14 0.07
57 3 0.01
58 4 0.02
59 8 0.04
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGATACTCCAACCTCGATTTTATTTCTAAAACATCAATTTTTCATAATCG
Found at i:1766914 original size:28 final size:28
Alignment explanation
Indices: 1766836--1766914 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 28
1766826 CGATTTTCCA
* * *
1766836 TCATTGGGGGTACTCCAACCCTGTTATT
1 TCATAGGGGATACTCCAACCCCGTTATT
* *
1766864 TCATCGGGGATACTCCAATCCCGTTATT
1 TCATAGGGGATACTCCAACCCCGTTATT
*
1766892 T-TTGAGGGGATACTCCAACCCCG
1 TCAT-AGGGGATACTCCAACCCCG
1766915 ATTTTATTTC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (28 bp):
TCATAGGGGATACTCCAACCCCGTTATT
Found at i:1767008 original size:158 final size:156
Alignment explanation
Indices: 1766522--1767013 Score: 498
Period size: 158 Copynumber: 3.1 Consensus size: 156
1766512 GATTTTTCAT
* * * * *
1766522 AATCAAGGGTACTCTAACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGA
1 AATCGAGGGTACTCCAACCCAGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTTGAGGGGA
* * *
1766587 TACTCCAACCCTGATTTTATTT-TCAAAACACCAATTTTCTATAATCAAGGATACTCCAACCC--
66 TACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTCCATAATCGAGGATACTCCAACCCGA
* * ** *
1766649 TGTTATTTCC--GA-AGGGA-TACTCC
130 TTTTATTTCCAAAACACCGATTTCTCC
* *** * * *
1766672 AACCCCGATTTTACTTCCAAAACACCAATTTTTTACAATCGGGGATACTCCAACCCCGTTATTTT
1 AA--TCGAGGGTAC-TCC--AAC-CCAGTTATTT-C-ATCGGGGATACTCCAATCCCGTTATTTT
* * * * *
1766737 TGA-GGGATACTCCAACCTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCC
58 TGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGAGGATACTCC
*
1766801 AACCTCGATTTTATTTCCAAAACATCGATTT-TCC
123 AACC-CGATTTTATTTCCAAAACACCGATTTCTCC
* * *
1766835 ATCATTGGGGGTACTCCAACCCTGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTTGAGGG
1 A--ATCGAGGGTACTCCAACCCAGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTTGAGGG
* *
1766900 GATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTCCACAATCGAGGATACTCCAACTCC
64 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGAGGATACTCCAAC-CC
*
1766965 GATTTTATTTCCAAAACACCAATTTCTCAC
128 GATTTTATTTCCAAAACACCGATTTCTC-C
*
1766995 AATCGAGGATACTCCAACC
1 AATCGAGGGTACTCCAACC
1767014 TCGGCCTTAT
Statistics
Matches: 273, Mismatches: 47, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
150 2 0.01
152 5 0.02
153 2 0.01
155 3 0.01
156 6 0.02
157 86 0.32
158 128 0.47
159 10 0.04
160 14 0.05
162 4 0.01
163 11 0.04
164 1 0.00
165 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.32
Consensus pattern (156 bp):
AATCGAGGGTACTCCAACCCAGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTTGAGGGGA
TACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGAGGATACTCCAACCCGAT
TTTATTTCCAAAACACCGATTTCTCC
Found at i:1768714 original size:21 final size:20
Alignment explanation
Indices: 1768667--1768722 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
1768657 GTATCGATAC
* **
1768667 ATTGTATCAATACATGTTCA
1 ATTGTATCGATACATGGACA
1768687 A-TGTATCGATACATGGACAA
1 ATTGTATCGATACATGGAC-A
1768707 ATTGTATCGATACATG
1 ATTGTATCGATACATG
1768723 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.45
20 3 0.10
21 14 0.45
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (20 bp):
ATTGTATCGATACATGGACA
Found at i:1776800 original size:18 final size:19
Alignment explanation
Indices: 1776767--1776805 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
1776757 ATAAATTTTT
*
1776767 TATAAAAAGGGAGAGAAGA
1 TATAAAAAGCGAGAGAAGA
1776786 TATAAAAAGCG-GAGAAGA
1 TATAAAAAGCGAGAGAAGA
1776804 TA
1 TA
1776806 ATCGTTGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.56, C:0.03, G:0.28, T:0.13
Consensus pattern (19 bp):
TATAAAAAGCGAGAGAAGA
Found at i:1776845 original size:35 final size:37
Alignment explanation
Indices: 1776801--1776875 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 37
1776791 AAAGCGGAGA
*
1776801 AGATAATCGTTGAAGGGGGAG-A-GTTTTTTAAGAGG
1 AGATAATCGTTGAAGGGGGAGAATATTTTTTAAGAGG
* *
1776836 AGATAATCGTTTAAGGGGGAGAATATTTTTTAAGGGG
1 AGATAATCGTTGAAGGGGGAGAATATTTTTTAAGAGG
1776873 AGA
1 AGA
1776876 AAAAAAACGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
35 20 0.57
36 1 0.03
37 14 0.40
ACGTcount: A:0.33, C:0.03, G:0.35, T:0.29
Consensus pattern (37 bp):
AGATAATCGTTGAAGGGGGAGAATATTTTTTAAGAGG
Found at i:1777184 original size:21 final size:19
Alignment explanation
Indices: 1777146--1777184 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
1777136 AAAGATTATA
*
1777146 AAAAACCGAAAAATGTTTG
1 AAAAACCGAAAAAAGTTTG
1777165 AAAAACCGTAAACAAAGTTT
1 AAAAACCG-AAA-AAAGTTT
1777185 TATTCACTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.21
Consensus pattern (19 bp):
AAAAACCGAAAAAAGTTTG
Found at i:1777448 original size:19 final size:21
Alignment explanation
Indices: 1777424--1777475 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
1777414 CGATACATTA
**
1777424 TATCGATACATGTTC-AA-TG
1 TATCGATACATGGACAAATTG
1777443 TATCGATACATGGACAAATTG
1 TATCGATACATGGACAAATTG
1777464 TATCGATACATG
1 TATCGATACATG
1777476 AAACTGGTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 2 0.07
21 14 0.48
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (21 bp):
TATCGATACATGGACAAATTG
Found at i:1777450 original size:32 final size:33
Alignment explanation
Indices: 1777391--1777453 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
1777381 CACCCAAATG
**
1777391 TATCGATACATGCTGCTTTGTATCGATACATTA
1 TATCGATACATGCTGCAATGTATCGATACATTA
*
1777424 TATCGATACATG-TTCAATGTATCGATACAT
1 TATCGATACATGCTGCAATGTATCGATACAT
1777454 GGACAAATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (33 bp):
TATCGATACATGCTGCAATGTATCGATACATTA
Found at i:1783266 original size:15 final size:15
Alignment explanation
Indices: 1783246--1783280 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1783236 TTAACATAGT
1783246 TTTTTTAAATTAATA
1 TTTTTTAAATTAATA
**
1783261 TTTTTTAGCTTAATA
1 TTTTTTAAATTAATA
1783276 TTTTT
1 TTTTT
1783281 ACCAAACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (15 bp):
TTTTTTAAATTAATA
Found at i:1785232 original size:153 final size:152
Alignment explanation
Indices: 1785030--1785584 Score: 636
Period size: 153 Copynumber: 3.6 Consensus size: 152
1785020 ATTTTCTTTC
* * * * **
1785030 AAAATTTTTCTATTTCTAAAATAC-GAAGTTTCCTACTTCATAAATTTCTCTGATAATATTTTTC
1 AAAATTTTTCTATTACTAAGATACAG-AGTTTTCTACTT-ATAAATTTCTCCGATAGGATTTTTC
* * *
1785094 TAAGTTTATAATTTTTAAAATTCTCCAAATATTATTGTTTAATTTATATTAAATCAGTTTAGAAA
64 TAAGTTTATAATTTTTAAAATTCTTCAAATATTATTGTTTAATTCATATCAAATCAGTTTAGAAA
1785159 AATTCAATTTATTTTATGAGTTTT
129 AATTCAATTTATTTTATGAGTTTT
** *
1785183 AAAATTTTTCCTATTACTAAGATATGGAGTTTTCTACTTGTAAATTTCTCCGATAGGATTTTTCT
1 AAAATTTTT-CTATTACTAAGATACAGAGTTTTCTACTTATAAATTTCTCCGATAGGATTTTTCT
* * * * * * *
1785248 AAGTTTATGATTTTCAAAATTCTTTAAAAATTATTGTTTAACTCATATCAAATTAGTTTTGAAAA
65 AAGTTTATAATTTTTAAAATTCTTCAAATATTATTGTTTAATTCATATCAAATCAGTTTAGAAAA
1785313 ATTCAATTTATTTTATGAGTTTT
130 ATTCAATTTATTTTATGAGTTTT
*
1785336 AGAATTTTTTCTATTA-TCAAGATACAGAGTTTTCCT-CTCTATAAATTTCTCCGATAGGATTTT
1 A-AAATTTTTCTATTACT-AAGATACAGAGTTTT-CTACT-TATAAATTTCTCCGATAGGATTTT
* ** *
1785399 TCTAAGTTTATAATTTTTGAAATTCTTCAAATATTATTACTTAATTCATATCAAATCAATTTTA-
62 TCTAAGTTTATAATTTTTAAAATTCTTCAAATATTATTGTTTAATTCATATCAAATC-AGTTTAG
* *
1785463 AACAATTCAATTTATTTTATAAGTTTT
126 AAAAATTCAATTTATTTTATGAGTTTT
* ** * * * * * * *
1785490 ATAATTTTTCTAAAACTAAGTTACAGAGTTTTTTCCTTTGTAAATTTCTCCGGTTGCA-TTTTCT
1 AAAATTTTTCTATTACTAAGATACAGAGTTTTCTAC-TTATAAATTTCTCCGATAGGATTTTTCT
* * *
1785554 CAGTTTA-AATTTTTAAAATTTTTTAAATATT
65 AAGTTTATAATTTTTAAAATTCTTCAAATATT
1785585 TTTATTATAT
Statistics
Matches: 343, Mismatches: 49, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
151 21 0.06
152 14 0.04
153 172 0.50
154 131 0.38
155 5 0.01
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.48
Consensus pattern (152 bp):
AAAATTTTTCTATTACTAAGATACAGAGTTTTCTACTTATAAATTTCTCCGATAGGATTTTTCTA
AGTTTATAATTTTTAAAATTCTTCAAATATTATTGTTTAATTCATATCAAATCAGTTTAGAAAAA
TTCAATTTATTTTATGAGTTTT
Found at i:1787088 original size:165 final size:163
Alignment explanation
Indices: 1786916--1787476 Score: 526
Period size: 165 Copynumber: 3.4 Consensus size: 163
1786906 TTGAGACCTT
* *
1786916 TTTGTAATTTTAAAAAGTTTAGAGGTTTATTTGCAAATATTGA-AAATTTTGTTCTAAGGCCAAA
1 TTTGTAATTTTAAAAAGTTTAGAGGTTTAATTGTAAATATTGAGAAA-TTTGTTCTAAGGCCAAA
* *
1786980 AATACTTGGCCGAATCTTTGTTGTAATTTTTGGATCTAATTTTTGTGTTGATTTTGATGTGTTTA
65 GATACTTGGCCGAATCTTT-TTGTAATTTTT-GATCTAATTTTTGTGTTGATTTTGATGTGTTTG
*
1787045 ATATTTAATTTTGTTTTTTAATTATATAAGAATTAA
128 ATATTTAATTTTGTTTTTTAATTATATAAGGATTAA
* * * *
1787081 TTTGTAATTTTAAAAAATTTAG-GGATTTAAGTGTAAATATT-ATAAATTTGTTCCAAGGCCAAA
1 TTTGTAATTTTAAAAAGTTTAGAGG-TTTAATTGTAAATATTGAGAAATTTGTTCTAAGGCCAAA
* * * ** * * * * * *
1787144 GTTACTTGGCCAAATCTTTCTTGTGACTTTTTCTTGTGATTTTAGGTGATAATTTTGATATGTTT
65 GATACTTGGCCGAATCTTT-TTGT-AATTTTTGATCTAATTTT-TGTGTTGATTTTGATGTGTTT
* * *
1787209 GATATTTAATTTTG-TGTTTGATTATATAAGGATCAA
127 GATATTTAATTTTGTTTTTTAATTATATAAGGATTAA
* * * *
1787245 TTTGTAATTTTAGAAAGTTTAGGGGTTTAACTATAAATATTG-GAAAATTTTGTTCTAAGGCCAA
1 TTTGTAATTTTAAAAAGTTTAGAGGTTTAATTGTAAATATTGAG-AAA-TTTGTTCTAAGGCCAA
* * * * * * * *
1787309 AGAT-CATTGGCTGAATCTGTTTTATAAACTTTAGATCTATTTTTTAG-GTTGGTTATGATGTAT
64 AGATAC-TTGGCCGAATCT-TTTTGT-AATTTTTGATCTAATTTTT-GTGTTGATTTTGATGTGT
** * * ** *
1787372 TTGACGTTTAATTTTATTTTCTAACCATATAAGGACTAA
125 TTGATATTTAATTTTGTTTTTTAATTATATAAGGATTAA
* * *
1787411 TTTGCAAATTTAAAAAGTTTATAGG-TTAATTTGTAAATAATTGAGAAATTTGTTCTAAGGCCAA
1 TTTGTAATTTTAAAAAGTTTAGAGGTTTAA-TTGTAAAT-ATTGAGAAATTTGTTCTAAGGCCAA
1787475 AG
64 AG
1787477 GAAGGTGGTC
Statistics
Matches: 315, Mismatches: 66, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
164 98 0.31
165 106 0.34
166 101 0.32
167 9 0.03
168 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.45
Consensus pattern (163 bp):
TTTGTAATTTTAAAAAGTTTAGAGGTTTAATTGTAAATATTGAGAAATTTGTTCTAAGGCCAAAG
ATACTTGGCCGAATCTTTTTGTAATTTTTGATCTAATTTTTGTGTTGATTTTGATGTGTTTGATA
TTTAATTTTGTTTTTTAATTATATAAGGATTAA
Found at i:1787162 original size:164 final size:164
Alignment explanation
Indices: 1786916--1787312 Score: 469
Period size: 164 Copynumber: 2.4 Consensus size: 164
1786906 TTGAGACCTT
** * *
1786916 TTTGTAATTTTAAAAAGTTTAGAGGTTTATTTGCAAATATTGAAAATTTTGTTCTAAGGCCAAAA
1 TTTGTAATTTTAAAAAGTTTAG-GGTTTAACTGTAAATATTGAAAATTTTGTTCTAAGGCCAAAG
* * * * * * *
1786981 ATACTTGGCCGAATCTTTGTTGT-AATTTTTGGATCTAATTTT-TGTGTTGATTTTGATGTGTTT
65 ATACTTGGCCAAATCTTTCTTGTGAATTTTT-CATCTAATTTTAGGTGATAATTTTGATATGTTT
* *
1787044 AATATTTAATTTTGTTTTTTAATTATATAAGAATTAA
129 AATATTTAATTTTG-TGTTTAATTATATAAGAATCAA
* * *
1787081 TTTGTAATTTTAAAAAATTTAGGGATTTAAGTGTAAATATT-ATAAA-TTTGTTCCAAGGCCAAA
1 TTTGTAATTTTAAAAAGTTTAGGG-TTTAACTGTAAATATTGA-AAATTTTGTTCTAAGGCCAAA
* * * * *
1787144 GTTACTTGGCCAAATCTTTCTTGTGACTTTTTCTTGTGATTTTAGGTGATAATTTTGATATGTTT
64 GATACTTGGCCAAATCTTTCTTGTGAATTTTTCATCTAATTTTAGGTGATAATTTTGATATGTTT
* * *
1787209 GATATTTAATTTTGTGTTTGATTATATAAGGATCAA
129 AATATTTAATTTTGTGTTTAATTATATAAGAATCAA
* *
1787245 TTTGTAATTTTAGAAAGTTTAGGGGTTTAACTATAAATATTGGAAAATTTTGTTCTAAGGCCAAA
1 TTTGTAATTTTAAAAAGTTTA-GGGTTTAACTGTAAATATT-GAAAATTTTGTTCTAAGGCCAAA
1787310 GAT
64 GAT
1787313 CATTGGCTGA
Statistics
Matches: 195, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
164 97 0.50
165 79 0.41
166 19 0.10
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.46
Consensus pattern (164 bp):
TTTGTAATTTTAAAAAGTTTAGGGTTTAACTGTAAATATTGAAAATTTTGTTCTAAGGCCAAAGA
TACTTGGCCAAATCTTTCTTGTGAATTTTTCATCTAATTTTAGGTGATAATTTTGATATGTTTAA
TATTTAATTTTGTGTTTAATTATATAAGAATCAA
Found at i:1788215 original size:154 final size:158
Alignment explanation
Indices: 1787865--1788220 Score: 409
Period size: 160 Copynumber: 2.3 Consensus size: 158
1787855 AAAGTTATCA
* * * * *
1787865 AGATACTTTTATGTCGAAGGTATACTTTAAGAGTATTTTTGTAATTTTCTTAGAACCAAGTTCTA
1 AGATACTTTTATGTCGAAGGTATACCTTAGGGGTATTTTGGTAATTTTCTTAGAACCAAGTTCCA
* * *
1787930 GGTTGTCACTGGGATGCTATTATGCCAAATGTATGCAATTAGGATAGGTTCATAATATTATGCCA
66 AGTTGTCACTAGGATGCTATTATGCCAAAAGTATGCAATTAGGATAGGTTCATAATATTATG---
* * *
1787995 AATGTAATTTTAAGAGTCCATTAGGGTTATCG
128 AATCT-ATTTTAAGAGTCCATTAGGATTACCG
* *
1788027 AGATTCTTTAATGTCGAAGGTATACCTTAGGGGTATTTTGGTAATTTT-TTAGAACCAAG-TCCA
1 AGATACTTTTATGTCGAAGGTATACCTTAGGGGTATTTTGGTAATTTTCTTAGAACCAAGTTCCA
* * * * **
1788090 AGTTGTCACTAGGATGCTTTTATGCCAAAAGTGTGCATTTAGGATATGTTCATCCTATTTATG-A
66 AGTTGTCACTAGGATGCTATTATGCCAAAAGTATGCAATTAGGATAGGTTCATAATA-TTATGAA
**
1788154 TCCT-TTTT-A-AGTCTTTTAGGATTACCG
130 T-CTATTTTAAGAGTCCATTAGGATTACCG
* *
1788181 AGATACTTTTATGTCGGAGGTATACCCTAGGGGTATTTTG
1 AGATACTTTTATGTCGAAGGTATACCTTAGGGGTATTTTG
1788221 ACAATTTGTA
Statistics
Matches: 167, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
154 50 0.30
155 1 0.01
156 4 0.02
157 2 0.01
158 1 0.01
160 51 0.31
161 16 0.10
162 42 0.25
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.39
Consensus pattern (158 bp):
AGATACTTTTATGTCGAAGGTATACCTTAGGGGTATTTTGGTAATTTTCTTAGAACCAAGTTCCA
AGTTGTCACTAGGATGCTATTATGCCAAAAGTATGCAATTAGGATAGGTTCATAATATTATGAAT
CTATTTTAAGAGTCCATTAGGATTACCG
Found at i:1793060 original size:88 final size:88
Alignment explanation
Indices: 1792753--1793256 Score: 327
Period size: 88 Copynumber: 5.7 Consensus size: 88
1792743 TTGCATTTGC
* * * ** * *
1792753 ATTTGCATAATTTCATGTGCATTTTCCA-TCTTATTGATGTTTGCATTTGCATTATTTCACT-TA
1 ATTTGCATAATTTCATATGCATTTGCCACT-TTATAGATACTTGCATTTGCATCATTTCA-TGCA
* * * ** * *
1792816 AATTTACATTTTAGATGACATTAGT
64 CATATGCACCTTAGATGATATTGGT
* * * * * * ** *
1792841 ATTTGCATCATTGT-ATATGCATTTGCCCCTTTATGGATGCCTACCGTTGCATCGTTTCATGCAC
1 ATTTGCATAATT-TCATATGCATTTGCCACTTTATAGATACTTGCATTTGCATCATTTCATGCAC
* * * * * *
1792905 GTTTGCACTTTAAGATGACATTAGC
65 ATATGCACCTT-AGATGATATTGGT
* * * * *** * * * * * *
1792930 ATATACATCATTT-ATAGGCATTTTTTACTTGATTGATGCTTGCAGTTGCATCGTTCCATGCACA
1 ATTTGCATAATTTCATATGCATTTGCCACTTTATAGATACTTGCATTTGCATCATTTCATGCACA
* *
1792994 TATGCACGTTAGATGATATTGGC
66 TATGCACCTTAGATGATATTGGT
* * * *
1793017 ATTAGCATAATTTCATATGCATTTACCACTTTACAGATACTTGCATTTACATCATTTCATGCACA
1 ATTTGCATAATTTCATATGCATTTGCCACTTTATAGATACTTGCATTTGCATCATTTCATGCACA
* * *
1793082 TTTGCATCATATG-TGATATTGGT
66 TATGCACCTTA-GATGATATTGGT
* * * ** *
1793105 ATTTGCATTATTTCATAGGCATTTGCCACTTTATTA-ATTCTTGCATTTGCATTGTTTTATGCAC
1 ATTTGCATAATTTCATATGCATTTGCCACTTTA-TAGATACTTGCATTTGCATCATTTCATGCAC
* **
1793169 ATCTGCACCATTAGACCATATTGGT
65 ATATGCACC-TTAGATGATATTGGT
* * * *
1793194 ATTTGCATCATTTCATATGCATTTGCCTCTTTATTGATGCTTGCATTTGCATCATTTCATGCA
1 ATTTGCATAATTTCATATGCATTTGCCACTTTATAGATACTTGCATTTGCATCATTTCATGCA
1793257 TATTCACACA
Statistics
Matches: 326, Mismatches: 80, Indels: 19
0.77 0.19 0.04
Matches are distributed among these distances:
87 21 0.06
88 216 0.66
89 89 0.27
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (88 bp):
ATTTGCATAATTTCATATGCATTTGCCACTTTATAGATACTTGCATTTGCATCATTTCATGCACA
TATGCACCTTAGATGATATTGGT
Found at i:1793817 original size:40 final size:40
Alignment explanation
Indices: 1793773--1793994 Score: 160
Period size: 40 Copynumber: 5.5 Consensus size: 40
1793763 AACTCATTAG
* *
1793773 CTTTATCGGTTTTGCCCTAGCTAACCTTTTAATTAGTTGA
1 CTTTATCGGTTTCGCCCTAGCTAACCTTTTAATTCGTTGA
* * * * * * *
1793813 CTTTATCGATTTC-ACCTTGGTGAATCCTTCTAACTCGTTGG
1 CTTTATCGGTTTCGCCCTAGCT-AA-CCTTTTAATTCGTTGA
* * * * * *
1793854 TTTTATCAGTTTCACCCTGGCCAACCTTTTAATTGGTTGA
1 CTTTATCGGTTTCGCCCTAGCTAACCTTTTAATTCGTTGA
* * * *
1793894 CTTTATCAGTTTCGCCCTAG-TCACCCCTTTTAATCCGTTGG
1 CTTTATCGGTTTCGCCCTAGCT-A-ACCTTTTAATTCGTTGA
* * * * * *
1793935 TTTTATCGGTTTCACCCTAGCCAATCTTTTAATTGGTTAA
1 CTTTATCGGTTTCGCCCTAGCTAACCTTTTAATTCGTTGA
*
1793975 CTTTATCGGTTTAGCCCTAG
1 CTTTATCGGTTTCGCCCTAG
1793995 TCATCCTTTT
Statistics
Matches: 135, Mismatches: 41, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
39 5 0.04
40 71 0.53
41 55 0.41
42 4 0.03
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.42
Consensus pattern (40 bp):
CTTTATCGGTTTCGCCCTAGCTAACCTTTTAATTCGTTGA
Found at i:1793884 original size:81 final size:81
Alignment explanation
Indices: 1793718--1794061 Score: 329
Period size: 81 Copynumber: 4.3 Consensus size: 81
1793708 CTATATGAAA
* * * * * *
1793718 CTTTTAATTGGTTGACTTTATCTATTTTGCCCTGGTCAAT-GTTTTAACTCATTAGCTTTATCGG
1 CTTTTAATTGGTTGACTTTATCGATTTCGCCCTGGTCAATCCTTTTAACTCGTTGGTTTTATCGG
** *
1793782 TTTTGCCCTAGCTAAC
66 TTTCACCCTAGCCAAC
* * * * * *
1793798 CTTTTAATTAGTTGACTTTATCGATTTCACCTTGGTGAATCCTTCTAACTCGTTGGTTTTATCAG
1 CTTTTAATTGGTTGACTTTATCGATTTCGCCCTGGTCAATCCTTTTAACTCGTTGGTTTTATCGG
*
1793863 TTTCACCCTGGCCAAC
66 TTTCACCCTAGCCAAC
* **
1793879 CTTTTAATTGGTTGACTTTATC-AGTTTCGCCCTAGTCACCCCTTTTAA-TCCGTTGGTTTTATC
1 CTTTTAATTGGTTGACTTTATCGA-TTTCGCCCTGGTCAATCCTTTTAACT-CGTTGGTTTTATC
*
1793942 GGTTTCACCCTAGCCAAT
64 GGTTTCACCCTAGCCAAC
* * * * * * *
1793960 CTTTTAATTGGTTAACTTTATCGGTTTAGCCCTAGTC-ATCCTTTTTAACCCATTGGCTTTATCG
1 CTTTTAATTGGTTGACTTTATCGATTTCGCCCTGGTCAATCC-TTTTAACTCGTTGGTTTTATCG
* * * *
1794024 GTTTCACACTGGCTAATA
65 GTTTCACCCTAGCCAA-C
*
1794042 C-TTTAATTGGTTGATTTTAT
1 CTTTTAATTGGTTGACTTTAT
1794062 TAGTTTCACC
Statistics
Matches: 216, Mismatches: 41, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
80 38 0.18
81 177 0.82
82 1 0.00
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (81 bp):
CTTTTAATTGGTTGACTTTATCGATTTCGCCCTGGTCAATCCTTTTAACTCGTTGGTTTTATCGG
TTTCACCCTAGCCAAC
Found at i:1793940 original size:41 final size:40
Alignment explanation
Indices: 1793848--1793967 Score: 141
Period size: 41 Copynumber: 3.0 Consensus size: 40
1793838 CCTTCTAACT
* *
1793848 CGTTGGTTTTATCAGTTTCACCCTGGCCAACCTTTTAATT
1 CGTTGGTTTTATCAGTTTCACCCTAGCCAACCTTTTAATC
* ** * * *
1793888 GGTTGACTTTATCAGTTTCGCCCTAGTCACCCCTTTTAATC
1 CGTTGGTTTTATCAGTTTCACCCTAGCCA-ACCTTTTAATC
* *
1793929 CGTTGGTTTTATCGGTTTCACCCTAGCCAATCTTTTAAT
1 CGTTGGTTTTATCAGTTTCACCCTAGCCAACCTTTTAAT
1793968 TGGTTAACTT
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 31 0.49
41 32 0.51
ACGTcount: A:0.17, C:0.26, G:0.15, T:0.42
Consensus pattern (40 bp):
CGTTGGTTTTATCAGTTTCACCCTAGCCAACCTTTTAATC
Found at i:1794004 original size:40 final size:40
Alignment explanation
Indices: 1793718--1794004 Score: 147
Period size: 40 Copynumber: 7.1 Consensus size: 40
1793708 CTATATGAAA
** * *
1793718 CTTTTAATTGGTTGACTTTATCTATTTTGCCCTGGTCAAT-
1 CTTTTAATTGGTTGACTTTATCGGTTTAGCCCTAGTC-ATC
* * ** * *
1793758 GTTTTAACTCATT-AGCTTTATCGGTTTTGCCCTAG-CTAAC
1 CTTTTAATTGGTTGA-CTTTATCGGTTTAGCCCTAGTC-ATC
* * * * *
1793798 CTTTTAATTAGTTGACTTTATCGATTTCA-CCTTGGTGAATC
1 CTTTTAATTGGTTGACTTTATCGGTTT-AGCCCTAGT-CATC
* * * ** * * * *
1793839 CTTCTAACTCGTTGGTTTTATCAGTTTCA-CCCTGGCCAAC
1 CTTTTAATTGGTTGACTTTATCGGTTT-AGCCCTAGTCATC
* * *
1793879 CTTTTAATTGGTTGACTTTATCAGTTTCGCCCTAGTCACCC
1 CTTTTAATTGGTTGACTTTATCGGTTTAGCCCTAGTCA-TC
** ** *
1793920 CTTTTAATCCGTTGGTTTTATCGGTTTCA-CCCTAGCCAAT-
1 CTTTTAATTGGTTGACTTTATCGGTTT-AGCCCTAGTC-ATC
*
1793960 CTTTTAATTGGTTAACTTTATCGGTTTAGCCCTAGTCATC
1 CTTTTAATTGGTTGACTTTATCGGTTTAGCCCTAGTCATC
1794000 CTTTT
1 CTTTT
1794005 TAACCCATTG
Statistics
Matches: 182, Mismatches: 53, Indels: 24
0.70 0.20 0.09
Matches are distributed among these distances:
39 6 0.03
40 115 0.63
41 60 0.33
42 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.44
Consensus pattern (40 bp):
CTTTTAATTGGTTGACTTTATCGGTTTAGCCCTAGTCATC
Found at i:1794030 original size:162 final size:162
Alignment explanation
Indices: 1793717--1794100 Score: 377
Period size: 162 Copynumber: 2.4 Consensus size: 162
1793707 ACTATATGAA
* * **
1793717 ACTTTTAATTGGTTGACTTTATCTA-TTTTGCCCTGGTCAATGTTTTAACTCATTAGCTTTATCG
1 ACTTTTAATTGGTTGACTTTATC-AGTTTCGCCCTAGTCAACCTTTTAACTCATTAGCTTTATCG
** * * * *
1793781 GTTTTGCCCTAGCTAACCTTTTAATTAGTTGACTTTATCGATTTCACCTTGGTGAATCCTTCTAA
65 GTTTCACCCTAGCCAACCTTTTAATTAGTTAACTTTATCGATTTCACCCTAGTGAATCCTTCTAA
* * * *
1793846 CTCGTTGGTTTTATCAGTTTCACCCTGGCCAA-
130 CCCATTGGCTTTATCAGTTTCACACTGGCCAAT
* * * * *
1793878 CCTTTTAATTGGTTGACTTTATCAGTTTCGCCCTAGTCACCCCTTTTAA-TCCGTTGGTTTTATC
1 ACTTTTAATTGGTTGACTTTATCAGTTTCGCCCTAGTCA-ACCTTTTAACT-CATTAGCTTTATC
* * * * *
1793942 GGTTTCACCCTAGCCAATCTTTTAATTGGTTAACTTTATCGGTTT-AGCCCTAGT-CATCCTTTT
64 GGTTTCACCCTAGCCAACCTTTTAATTAGTTAACTTTATCGATTTCA-CCCTAGTGAATCC-TTC
* *
1794005 TAACCCATTGGCTTTATCGGTTTCACACTGGCTAAT
127 TAACCCATTGGCTTTATCAGTTTCACACTGGCCAAT
* * * * *
1794041 AC-TTTAATTGGTTGATTTTATTAGTTTCACCCT-GTTCAACCCTTCTAACCCATTAGCTTT
1 ACTTTTAATTGGTTGACTTTATCAGTTTCGCCCTAG-TCAA-CCTTTTAACTCATTAGCTTT
1794101 TATAGGCTTT
Statistics
Matches: 178, Mismatches: 36, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
160 1 0.01
161 41 0.23
162 135 0.76
163 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (162 bp):
ACTTTTAATTGGTTGACTTTATCAGTTTCGCCCTAGTCAACCTTTTAACTCATTAGCTTTATCGG
TTTCACCCTAGCCAACCTTTTAATTAGTTAACTTTATCGATTTCACCCTAGTGAATCCTTCTAAC
CCATTGGCTTTATCAGTTTCACACTGGCCAAT
Found at i:1794090 original size:81 final size:81
Alignment explanation
Indices: 1793718--1794142 Score: 326
Period size: 81 Copynumber: 5.2 Consensus size: 81
1793708 CTATATGAAA
** * ** * * *
1793718 CTTTTAATTGGTTGACTTTATCTA-TTTTGCCCTGGTCAA-TGTTTTAACTCATTAGCTTTATCG
1 CTTTTAATTGGTTGACTTTATC-AGTTTCACCCTAGTCAACCCTTCTAACCCATTGGCTTTATCG
** * * *
1793781 GTTTTGCCCTAGCTAAC
65 GTTTCACCCTGGCCAAT
* * * * * * * * *
1793798 CTTTTAATTAGTTGACTTTATC-GATTTCACCTTGGTGAATCCTTCTAACTCGTTGGTTTTATCA
1 CTTTTAATTGGTTGACTTTATCAG-TTTCACCCTAGTCAACCCTTCTAACCCATTGGCTTTATCG
*
1793862 GTTTCACCCTGGCCAAC
65 GTTTCACCCTGGCCAAT
* * * * * *
1793879 CTTTTAATTGGTTGACTTTATCAGTTTCGCCCTAGTCACCCCTTTTAATCCGTTGGTTTTATCGG
1 CTTTTAATTGGTTGACTTTATCAGTTTCACCCTAGTCAACCCTTCTAACCCATTGGCTTTATCGG
*
1793944 TTTCACCCTAGCCAAT
66 TTTCACCCTGGCCAAT
* * * * *
1793960 CTTTTAATTGGTTAACTTTATCGGTTT-AGCCCTAGTCATCCTTTTTAACCCATTGGCTTTATCG
1 CTTTTAATTGGTTGACTTTATCAGTTTCA-CCCTAGTCAACCCTTCTAACCCATTGGCTTTATCG
* *
1794024 GTTTCACACTGGCTAAT
65 GTTTCACCCTGGCCAAT
* * *
1794041 AC-TTTAATTGGTTGATTTTATTAGTTTCACCCT-GTTCAACCCTTCTAACCCATTAGCTTTTAT
1 -CTTTTAATTGGTTGACTTTATCAGTTTCACCCTAG-TCAACCCTTCTAACCCATTGGC-TTTAT
* * * *
1794104 AGGCTTTGCA--TTGGCTAAC
63 CGG-TTT-CACCCTGGCCAAT
1794123 CTTTTAATTGGTTGACTTTA
1 CTTTTAATTGGTTGACTTTA
1794143 AACCCATTAG
Statistics
Matches: 281, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
80 33 0.12
81 209 0.74
82 34 0.12
83 3 0.01
84 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.44
Consensus pattern (81 bp):
CTTTTAATTGGTTGACTTTATCAGTTTCACCCTAGTCAACCCTTCTAACCCATTGGCTTTATCGG
TTTCACCCTGGCCAAT
Found at i:1794172 original size:55 final size:56
Alignment explanation
Indices: 1794087--1794197 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 56
1794077 CAACCCTTCT
1794087 AACCCATTAGCTTTTATAGGCTTTGCATTGGCTAACCTTTTAATTGGTTGACTTTA
1 AACCCATTAGCTTTTATAGGCTTTGCATTGGCTAACCTTTTAATTGGTTGACTTTA
1794143 AACCCATTAGC-TTTATAGGCTTTGCATTGGCTAACCTTTTAATTGGTTGACTTTA
1 AACCCATTAGCTTTTATAGGCTTTGCATTGGCTAACCTTTTAATTGGTTGACTTTA
1794198 TTTGTTTTTC
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 44 0.80
56 11 0.20
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.42
Consensus pattern (56 bp):
AACCCATTAGCTTTTATAGGCTTTGCATTGGCTAACCTTTTAATTGGTTGACTTTA
Found at i:1794320 original size:81 final size:81
Alignment explanation
Indices: 1794175--1794326 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 81
1794165 TGCATTGGCT
* * * * * *
1794175 AACCTTTTAATTGGTTGACTTTATTTGTTTTTCCTTGGTCAACCTTTCTAACTCATTGGGTTTAT
1 AACCTTTTAATTAGTTGACTTTATTTGATTTTCCTTGCTCAACCCTTCTAACTCATTAGCTTTAT
1794240 CAGTTTCGCCTTAACC
66 CAGTTTCGCCTTAACC
* *
1794256 AACCTTTTAATTAGTTGATTTTA-TTGATTTTGCTCTGCTCAACCCTTCTAA-TCTATTAGCTTT
1 AACCTTTTAATTAGTTGACTTTATTTGATTTTCCT-TGCTCAACCCTTCTAACTC-ATTAGCTTT
*
1794319 ATCGGTTT
64 ATCAGTTT
1794327 TACCTCTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
80 11 0.18
81 49 0.82
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (81 bp):
AACCTTTTAATTAGTTGACTTTATTTGATTTTCCTTGCTCAACCCTTCTAACTCATTAGCTTTAT
CAGTTTCGCCTTAACC
Found at i:1794661 original size:20 final size:19
Alignment explanation
Indices: 1794632--1794670 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
1794622 AGGTCAAAAC
1794632 CCTTAAATGTATCGATACA
1 CCTTAAATGTATCGATACA
1794651 CCTTCAAATGTATCGATACA
1 CCTT-AAATGTATCGATACA
1794671 TAATGCACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (19 bp):
CCTTAAATGTATCGATACA
Found at i:1794698 original size:13 final size:13
Alignment explanation
Indices: 1794680--1794704 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1794670 ATAATGCACA
1794680 GTATCGATACATT
1 GTATCGATACATT
1794693 GTATCGATACAT
1 GTATCGATACAT
1794705 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1794717 original size:20 final size:21
Alignment explanation
Indices: 1794692--1794744 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1794682 ATCGATACAT
*
1794692 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
1794712 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
1794733 TGTATCGATACA
1 TGTATCGATACA
1794745 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:1800785 original size:8 final size:8
Alignment explanation
Indices: 1800772--1800802 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
1800762 ATTTGATTAA
1800772 ATTTTGTG
1 ATTTTGTG
1800780 ATTTTGTG
1 ATTTTGTG
1800788 ATTTTGTG
1 ATTTTGTG
1800796 ATGTTTG
1 AT-TTTG
1800803 ATGTTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (8 bp):
ATTTTGTG
Found at i:1800973 original size:13 final size:13
Alignment explanation
Indices: 1800955--1800988 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
1800945 GCATTCTCTA
* *
1800955 TATCGATATATTT
1 TATCGATATAGTG
1800968 TATCGATATAGTG
1 TATCGATATAGTG
1800981 TATCGATA
1 TATCGATA
1800989 CAAAGGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (13 bp):
TATCGATATAGTG
Found at i:1801468 original size:21 final size:21
Alignment explanation
Indices: 1801431--1801475 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
1801421 ACAGCACTCA
*
1801431 CCAGGTCGCGACCGGCA-CCC
1 CCAGGTCGCAACCGGCAGCCC
*
1801451 CCAGGTCGCAATCGGGCAGCCC
1 CCAGGTCGCAA-CCGGCAGCCC
1801473 CCA
1 CCA
1801476 CACTCACAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 5 0.24
22 6 0.29
ACGTcount: A:0.18, C:0.47, G:0.29, T:0.07
Consensus pattern (21 bp):
CCAGGTCGCAACCGGCAGCCC
Found at i:1803717 original size:13 final size:13
Alignment explanation
Indices: 1803699--1803737 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1803689 ATAATCCCCC
*
1803699 TGTATCGATACAG
1 TGTATCGATACAA
1803712 TGTATCGATACAA
1 TGTATCGATACAA
1803725 TGTATCGATACAA
1 TGTATCGATACAA
1803738 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1809914 original size:13 final size:13
Alignment explanation
Indices: 1809896--1809921 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1809886 AATTTTTTTG
1809896 TGTATCGATACAT
1 TGTATCGATACAT
1809909 TGTATCGATACAT
1 TGTATCGATACAT
1809922 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1822135 original size:1 final size:1
Alignment explanation
Indices: 1822131--1822191 Score: 68
Period size: 1 Copynumber: 61.0 Consensus size: 1
1822121 ATTCTTTTTT
* * * * * *
1822131 AAAAAAAATAAAAAAACAAAAAAAAACAAAACAAAAAAAAACAAAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1822192 GAGAGAAAAG
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.90, C:0.07, G:0.02, T:0.02
Consensus pattern (1 bp):
A
Found at i:1822153 original size:15 final size:15
Alignment explanation
Indices: 1822132--1822182 Score: 77
Period size: 15 Copynumber: 3.4 Consensus size: 15
1822122 TTCTTTTTTA
*
1822132 AAAAAAATAAAAAAAC
1 AAAAAAA-AACAAAAC
1822148 AAAAAAAAACAAAAC
1 AAAAAAAAACAAAAC
1822163 AAAAAAAAACAAAA-
1 AAAAAAAAACAAAAC
1822177 AAAAAA
1 AAAAAA
1822183 GAAAAAAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
14 6 0.18
15 21 0.62
16 7 0.21
ACGTcount: A:0.90, C:0.08, G:0.00, T:0.02
Consensus pattern (15 bp):
AAAAAAAAACAAAAC
Found at i:1822200 original size:11 final size:11
Alignment explanation
Indices: 1822131--1822208 Score: 70
Period size: 11 Copynumber: 7.0 Consensus size: 11
1822121 ATTCTTTTTT
*
1822131 AAAAAAAATAA
1 AAAAAAAAGAA
1822142 AAAAACAAA-AA
1 AAAAA-AAAGAA
*
1822153 AAAACAAAA-CA
1 AAAA-AAAAGAA
*
1822164 AAAAAAAACAA
1 AAAAAAAAGAA
1822175 AAAAAAAAGAA
1 AAAAAAAAGAA
*
1822186 AAAAAAGAGAGA
1 AAAAAAAAGA-A
*
1822198 AAAGAAAAGAA
1 AAAAAAAAGAA
1822209 CCTACTTAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
10 4 0.07
11 40 0.70
12 13 0.23
ACGTcount: A:0.86, C:0.05, G:0.08, T:0.01
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:1823500 original size:115 final size:114
Alignment explanation
Indices: 1823298--1824250 Score: 1040
Period size: 115 Copynumber: 8.0 Consensus size: 114
1823288 GAGCAAGACG
*
1823298 CCTTTCAAAGCCGACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAA
*
1823362 GCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAAAGCAGGACGCTTTCT
65 GCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCTTT-T
* *
1823413 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* * *
1823478 CCCATACAAGCTGGTGGCACCTTCAGTTCTCAAAGAGCAGGAAGCCTTTT
66 CCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACG-CTTTT
* *
1823528 CCTTTCAAAGCCCACACAATTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAA-A
*
1823593 -CCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGC-GAGACCCTTTT
65 GCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAG-GACGCTTTT
* * *
1823642 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGTAGGACACCTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGACGCC-TTT-C-
* * *
1823706 TTTAAAGCCCATACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
62 ---AAAGCCCACACAAGCTGGTGGCAC-CTTC-AGTCCTCAAAGAGCAGGACGC-TTTT
* * * *
1823765 TCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCATGACGCATTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGACG------CCT
* * * *
1823829 TTTAAAGTCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
59 TTCAAAGCCCACACAAGCTGGTGGCAC-CTTC-AGTCCTCAAAGAGCAGGACG-CTTTT
* **
1823888 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGCAGGACATCTTTCAAA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAA
* * *
1823952 GCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGCGAAGGACATCTTTT
65 GCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGAC-GCTTTT
* * * **
1824003 CCATTT-AAAGACCACACAAGTTGGTGGCACTTGTCAGTCCTCAAGGAATAGGACGCCTTCTCTT
1 CC-TTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTT-TC--
* * * *
1824067 TTTAAAGCCTACACAAGTTGGTGGCACCTTCTAGTCCTCAACGAGCAGGATGC-TTT
62 ---AAAGCCCACACAAGCTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGCTTTT
* *
1824123 CTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCTTTTTCT
1 C-CTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGC-----C-
* * * *
1824188 TTTCAAAGCCCACACAAGTTGGTGGCACTTTTTAATCCTCAAAGAGCAGGACGCCTTTT
58 TTTCAAAGCCCACACAAGCTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACG-CTTTT
1824247 CCTT
1 CCTT
1824251 CTCTCCTTTG
Statistics
Matches: 721, Mismatches: 68, Indels: 90
0.82 0.08 0.10
Matches are distributed among these distances:
114 57 0.08
115 270 0.37
116 18 0.02
117 26 0.04
119 1 0.00
120 27 0.04
121 33 0.05
122 117 0.16
123 154 0.21
124 6 0.01
125 2 0.00
127 3 0.00
128 5 0.01
129 2 0.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (114 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
CCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCTTTT
Found at i:1823586 original size:61 final size:60
Alignment explanation
Indices: 1823298--1824250 Score: 955
Period size: 61 Copynumber: 16.1 Consensus size: 60
1823288 GAGCAAGACG
*
1823298 CCTTTCAAAGCCGACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG------
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGAGCAGGACGCCTTTT
* ** *
1823353 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAAAGCAGGACG-CTTTCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACGCCTTT-T
*
1823413 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGA------TG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * ** * *
1823468 CCTTTCAAAGCCCATACAAGCTGGTGGCACCTTCAGTTCTCAAAGAGCAGGAAGCCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
*
1823528 CCTTTCAAAGCCCACACAATTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACG------
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* **
1823583 CCTTTCAACA-CCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGC-GAGAC-CCTTTT
1 CCTTTCAA-AGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAG-GACGCCTTTT
* * *
1823642 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGTAGGACACCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA--TTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1823703 CCTTTTAAAGCCCATACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC-AGTCCTCAAAGAGCAGGACGCCTTTT
* * ** * *
1823765 TCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCATGACGCATTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC-AGTCCTCAAAGAGCAGGACGCCTTTT
* *
1823826 CCTTTTAAAGTCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC-AGTCCTCAAAGAGCAGGACGCCTTTT
* *
1823888 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGCAGGA---C--AT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA--TTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* ** * * **
1823944 -CTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGCGAAGGACATCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * * ** *
1824003 CCATTT-AAAGACCACACAAGTTGGTGGCACTTGTCAGTCCTCAAGGAATAGGACGCCTTCT
1 CC-TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * * ** * *
1824064 CTTTTTAAAGCCTACACAAGTTGGTGGCACCTTCTAGTCCTCAACGAGCAGGATG-C-TTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC-AGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1824123 CTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCTTTTT
1 C-CTTT-CAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1824186 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTTAATCCTCAAAGAGCAGGACGCCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
1824247 CCTT
1 CCTT
1824251 CTCTCCTTTG
Statistics
Matches: 756, Mismatches: 95, Indels: 88
0.81 0.10 0.09
Matches are distributed among these distances:
53 3 0.00
54 76 0.10
55 107 0.14
56 3 0.00
57 1 0.00
58 2 0.00
59 29 0.04
60 107 0.14
61 307 0.41
62 112 0.15
63 9 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (60 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
Found at i:1824101 original size:360 final size:355
Alignment explanation
Indices: 1823311--1824250 Score: 1236
Period size: 360 Copynumber: 2.7 Consensus size: 355
1823301 TTCAAAGCCG
* *
1823311 ACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTC----AAAGCCCACACAA
1 ACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGTAGGACGCCTTTCTTTTAAAGCCCACACAA
* * * *
1823372 GCTGGTGGCACCTTC-AGTCCTCAAAAAGCAGGACGCTTTCTCCTTTCAAAGCCCACACAAGTTG
65 GTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTCAAAGCCCACACAAGTTG
* * * * * *
1823436 GTGGCA-TTTTTCAGTCCTCAAAGAGCAG--G-A--TGCCTTTCAAAGCCCATACAAGCTGGTGG
130 GTGGCACCTTCT-AGTCCTCAAAGAGCAGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * *
1823495 CAC-CTTC-AGTTCTCAAAGAGCAGGAAGCCTTTTCCTTTCAAAGCCCACACAATTTGGTGGCAT
194 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
*
1823558 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAACACCCACACAAGCTGGTGGCACCTTCAGTCCT
259 TTTTCAGTCCTCAAAGAGCAGGACACCTTTCAACACCCACACAAGCTGGTGGCACCTTCAGTCCT
* *
1823623 CAAAGAGCGAGACCCTTTTCCTTTTAAAGCCC
324 CAAAGAGCGAGACCCTTTTCCATTTAAAGACC
* * *
1823655 ACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACACCTTTTCCTTTTAAAGCCCATAC
1 ACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGTAGGACGCC-TTT-CTTTTAAAGCCCACAC
* *
1823720 AAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTTAAAGCCCACACAAG
63 AAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTCAAAGCCCACACAAG
*
1823785 TTGGTGGCACCTTCTAGTCCTCAAAGAGCATGACGCATTTTCCTTTTAAAGTCCACACAAGTTGG
127 TTGGTGGCACCTTCTAGTCCTCAAAGAGCA-GACGCATTTTCCTTTTAAAGCCCACACAAGTTGG
*
1823850 TGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
191 TGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
*
1823915 CACCTTTT-AGTCCTCAAAGAGCAGGACATCTTTCAA-AGCCCACACAAGCTGGTGGCACCTTCA
256 CA-CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAACA-CCCACACAAGCTGGTGGCACCTTCA
*
1823978 GTCCTC-AA-AGCGAAGGACATCTTTTCCATTTAAAGACC
319 GTCCTCAAAGAGCG-A-GAC-CCTTTTCCATTTAAAGACC
* * *
1824016 ACACAAGTTGGTGGCACTTGTCAGTCCTCAAGGAATAGGACGCCTTCTCTTTTTAAAGCCTACAC
1 ACACAAGTTGGTGGCACTT-TCAGTCCTCAAAGAGTAGGACGCCTT-TC-TTTTAAAGCCCACAC
* * *
1824081 AAGTTGGTGGCACCTTCTAGTCCTCAACGAGCAGGATGC-TTTCTCTTTGCAAAGCCCACACAAG
63 AAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTT-CAAAGCCCACACAAG
* *
1824145 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGC-TTTTTCTTTTCAAAGCCCACACAAGTTG
127 TTGGTGGCACCTTCTAGTCCTCAAAGAGCA-GACGCATTTTCCTTTT-AAAGCCCACACAAGTTG
*
1824209 GTGGCACTTTT-TAATCCTCAAAGAGCAGGACGCCTTTTCCTT
190 GTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTT
1824251 CTCTCCTTTG
Statistics
Matches: 523, Mismatches: 45, Indels: 41
0.86 0.07 0.07
Matches are distributed among these distances:
344 36 0.07
345 6 0.01
346 1 0.00
350 22 0.04
351 3 0.01
352 66 0.13
353 4 0.01
355 1 0.00
356 1 0.00
358 31 0.06
359 54 0.10
360 215 0.41
361 83 0.16
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (355 bp):
ACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGTAGGACGCCTTTCTTTTAAAGCCCACACAAG
TTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTCAAAGCCCACACAAGTTGG
TGGCACCTTCTAGTCCTCAAAGAGCAGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
CTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTT
TTCAGTCCTCAAAGAGCAGGACACCTTTCAACACCCACACAAGCTGGTGGCACCTTCAGTCCTCA
AAGAGCGAGACCCTTTTCCATTTAAAGACC
Found at i:1824310 original size:45 final size:45
Alignment explanation
Indices: 1824257--1824412 Score: 167
Period size: 45 Copynumber: 3.5 Consensus size: 45
1824247 CCTTCTCTCC
*
1824257 TTTGTCCTCAAATAGCAGGACACATTTCATTTCCTTCTTTTCCCT
1 TTTGTCCTCAAAGAGCAGGACACATTTCATTTCCTTCTTTTCCCT
* ** * * *
1824302 TTTGTCCTCAAAGAGTAGGATGCCTTT-TTTTTCTT-TTTT-CC-
1 TTTGTCCTCAAAGAGCAGGACACATTTCATTTCCTTCTTTTCCCT
*
1824343 TTTGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCT
1 TTTGTCCTCAAAGAGCAGGACACATTTCATTTCCTTCTTTTCCCT
** * *
1824388 TCTACTTCTCAAAGAGCATGACACA
1 T-TTGTCCTCAAAGAGCAGGACACA
1824413 CTTTATTCTC
Statistics
Matches: 88, Mismatches: 18, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
41 22 0.25
42 8 0.09
43 8 0.09
44 8 0.09
45 23 0.26
46 19 0.22
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (45 bp):
TTTGTCCTCAAAGAGCAGGACACATTTCATTTCCTTCTTTTCCCT
Found at i:1824401 original size:46 final size:44
Alignment explanation
Indices: 1824223--1824415 Score: 179
Period size: 46 Copynumber: 4.5 Consensus size: 44
1824213 CACTTTTTAA
* *
1824223 TCCTCAAAGAGCAGGACGC-C-T--TTTCCTTC-TCT-CCTTTG
1 TCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCTTTG
* *
1824261 TCCTCAAATAGCAGGACACATTTCATTTCCTTCTTTTCCCTTTTG
1 TCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCC-TTTG
* ** ** *
1824306 TCCTCAAAGAGTAGGATGC-CTTTTTTTTCTT-TTTT-CCTTTG
1 TCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCTTTG
*
1824347 TCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCTTCTAC
1 TCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCTT-T-G
* *
1824393 TTCTCAAAGAGCATGACACACTT
1 TCCTCAAAGAGCAGGACACACTT
1824416 TATTCTCATT
Statistics
Matches: 122, Mismatches: 21, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
38 17 0.14
40 1 0.01
41 20 0.16
42 19 0.16
43 10 0.08
44 14 0.11
45 20 0.16
46 21 0.17
ACGTcount: A:0.20, C:0.29, G:0.12, T:0.39
Consensus pattern (44 bp):
TCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCCCTTTG
Found at i:1825729 original size:79 final size:79
Alignment explanation
Indices: 1825563--1825770 Score: 181
Period size: 79 Copynumber: 2.6 Consensus size: 79
1825553 TGGAGATAAC
* * * * * *
1825563 AACGGGGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTCTAGAAATAAAAATCGGGTTGGAGT
1 AACGGGGTTGAAGCATCCCCGATTATAGAAAATCGGTGTTCTAGAAATAAAAATAGGATTGGAGT
1825628 ATCTCCTCAGAAAT
66 ATCTCCTCAGAAAT
* * * * *
1825642 AACAGGGTTGAAGCATTCCCGATTATAGACAATCGGTGTT-TTGAAAATAAAATTAGGATTGGAG
1 AACGGGGTTGAAGCATCCCCGATTATAGAAAATCGGTGTTCTAG-AAATAAAAATAGGATTGGAG
**
1825706 TATC-CCTGTGAAAAT
65 TATCTCCTCAG-AAAT
* * * * * *
1825721 AATGGGGTTGGAGTATCCTCGATTGT-GAGAAATCGATGATT-TAGAAATAA
1 AACGGGGTTGAAGCATCCCCGATTATAGA-AAATCGGTG-TTCTAGAAATAA
1825771 GGCCAGGGTT
Statistics
Matches: 102, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
78 8 0.08
79 90 0.88
80 4 0.04
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (79 bp):
AACGGGGTTGAAGCATCCCCGATTATAGAAAATCGGTGTTCTAGAAATAAAAATAGGATTGGAGT
ATCTCCTCAGAAAT
Found at i:1825831 original size:51 final size:51
Alignment explanation
Indices: 1825723--1825841 Score: 150
Period size: 51 Copynumber: 2.3 Consensus size: 51
1825713 GTGAAAATAA
* * *
1825723 TGGGGTTGGAGTATCCTCGATTGTGAGAAATCGATGATTTAGAAATAAGGC
1 TGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATGATTTAGAAATAAAGC
** * * *
1825774 CAGGGTTGAAGTATCCCCGATTGTGAGAAATCAAT-ATTTTGGAAATAAAGT
1 TGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATGA-TTTAGAAATAAAGC
1825825 TGGGGTTGGAGTATCCC
1 TGGGGTTGGAGTATCCC
1825842 TTCAGAAATA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 1 0.02
51 55 0.98
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (51 bp):
TGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATGATTTAGAAATAAAGC
Found at i:1825861 original size:28 final size:28
Alignment explanation
Indices: 1825825--1825897 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
1825815 GAAATAAAGT
1825825 TGGGGTTGGAGTATCCCTTC-A-GAAATAA
1 TGGGGTTGGAGTATCCC--CGATGAAATAA
* *
1825853 TGGGATTGGAATATCCCCGATGAAATAA
1 TGGGGTTGGAGTATCCCCGATGAAATAA
*
1825881 CGGGGTTGGAGTATCCC
1 TGGGGTTGGAGTATCCC
1825898 AAATTATGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
26 1 0.03
27 1 0.03
28 36 0.95
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (28 bp):
TGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:1827103 original size:33 final size:33
Alignment explanation
Indices: 1827060--1827124 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1827050 TTTGAAGCAA
1827060 TGTATCGATACAAT-T-CATCATGTATCGATACAT
1 TGTATCGATACAATGTGC--CATGTATCGATACAT
*
1827093 TGTATTGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTGCCATGTATCGATACA
1827125 AACAGTGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTGCCATGTATCGATACAT
Found at i:1827921 original size:17 final size:18
Alignment explanation
Indices: 1827899--1827932 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1827889 TTATAAACAT
*
1827899 AAAGTCA-AAATACAAGG
1 AAAGTCATAAAGACAAGG
1827916 AAAGTCATAAAGACAAG
1 AAAGTCATAAAGACAAG
1827933 CAAAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.59, C:0.12, G:0.18, T:0.12
Consensus pattern (18 bp):
AAAGTCATAAAGACAAGG
Found at i:1835437 original size:20 final size:20
Alignment explanation
Indices: 1835412--1835465 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
1835402 GTTTGAAGCA
1835412 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
* *
1835432 ATGTATCAATATAATGTGCC
1 ATGTATCGATACAATGTGCC
1835452 ATGTATCGATACAA
1 ATGTATCGATACAA
1835466 ACACTAGTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 26 0.93
21 1 0.04
22 1 0.04
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:1835538 original size:19 final size:19
Alignment explanation
Indices: 1835494--1835549 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
1835484 CTGCCAGTTT
**
1835494 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
1835514 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
1835533 CATGTATCGATATAATG
1 CATGTATCGATACAATG
1835550 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:1835556 original size:32 final size:33
Alignment explanation
Indices: 1835515--1835577 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
1835505 ACAATTGTGC
*
1835515 ATGTATCGATACAATG-A-ACATGTATCGATATA
1 ATGTATCGATACAAAGCATA-ATGTATCGATATA
1835547 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
1835578 CATCTGAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATATA
Found at i:1837325 original size:19 final size:19
Alignment explanation
Indices: 1837301--1837340 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
1837291 CTAAAAATAT
*
1837301 TATAAAAAGTATAATA-AAA
1 TATAAAAA-AATAATATAAA
1837320 TATAAAAAAATAATATAAA
1 TATAAAAAAATAATATAAA
1837339 TA
1 TA
1837341 CGTCAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (19 bp):
TATAAAAAAATAATATAAA
Found at i:1837655 original size:68 final size:68
Alignment explanation
Indices: 1837558--1837686 Score: 233
Period size: 68 Copynumber: 1.9 Consensus size: 68
1837548 CCGTGGCATC
1837558 AATTTACAGGCCATTGCCCAACCCTAACCCTACGTAGGGC-AGGTTGGGTTAAACGAACCGTGGC
1 AATTTACAGGCCATTGCCCAACCCTAACCCTACGTAGGGCTA-GTTGGGTTAAACGAACCGTGGC
1837622 GTAG
65 GTAG
*
1837626 AATTTACAGGCCCTTGCCCAACCCTAACCCTACGTAGGGCTAGTTGGGTTAAACGAACCGT
1 AATTTACAGGCCATTGCCCAACCCTAACCCTACGTAGGGCTAGTTGGGTTAAACGAACCGT
1837687 CCACGAAATA
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
68 58 0.98
69 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (68 bp):
AATTTACAGGCCATTGCCCAACCCTAACCCTACGTAGGGCTAGTTGGGTTAAACGAACCGTGGCG
TAG
Found at i:1850941 original size:20 final size:20
Alignment explanation
Indices: 1850897--1850950 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
1850887 ATTTCAACGA
1850897 TTTGTATCGATACATAAAAT
1 TTTGTATCGATACATAAAAT
* ***
1850917 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATAAAAT
1850937 TTTGTATCGATACA
1 TTTGTATCGATACA
1850951 ATGTAAGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (20 bp):
TTTGTATCGATACATAAAAT
Found at i:1851013 original size:13 final size:13
Alignment explanation
Indices: 1850995--1851019 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1850985 ATTACTCACA
1850995 TGTATCGATACAT
1 TGTATCGATACAT
1851008 TGTATCGATACA
1 TGTATCGATACA
1851020 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1851084 original size:52 final size:52
Alignment explanation
Indices: 1851028--1851148 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1851018 CACTGATCTT
*
1851028 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1851080 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1851132 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1851149 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1854384 original size:52 final size:52
Alignment explanation
Indices: 1854223--1854364 Score: 275
Period size: 52 Copynumber: 2.7 Consensus size: 52
1854213 CGTTACGACA
1854223 GATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTATAGTGTATC
1 GATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTATAGTGTATC
*
1854275 GATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTATAATGTATC
1 GATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTATAGTGTATC
1854327 GATACATCTGGGCAAATTTGCCTGCATGTATCGATACA
1 GATACATCTGGGCAAATTTGCCTGCATGTATCGATACA
1854365 AAGATTAGTG
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
GATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTATAGTGTATC
Found at i:1854391 original size:13 final size:13
Alignment explanation
Indices: 1854373--1854397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1854363 CAAAGATTAG
1854373 TGTATCGATACAA
1 TGTATCGATACAA
1854386 TGTATCGATACA
1 TGTATCGATACA
1854398 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1854475 original size:33 final size:33
Alignment explanation
Indices: 1854438--1854504 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1854428 AGTAGCTTAA
1854438 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
1854471 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
1854504 A
1 A
1854505 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:1854478 original size:13 final size:13
Alignment explanation
Indices: 1854460--1854484 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1854450 CAAAAAAATA
1854460 TGTATCGATACAT
1 TGTATCGATACAT
1854473 TGTATCGATACA
1 TGTATCGATACA
1854485 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1856991 original size:13 final size:13
Alignment explanation
Indices: 1856973--1856998 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1856963 AAATTCTCAG
1856973 ATGTATCGATACA
1 ATGTATCGATACA
1856986 ATGTATCGATACA
1 ATGTATCGATACA
1856999 TTTCCTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1860748 original size:23 final size:23
Alignment explanation
Indices: 1860699--1860749 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
1860689 AATATTTTTT
* * *
1860699 ATTTTTTAAAACAAATAAAGATC
1 ATTTTTTAAAACAAAAAAACATA
1860722 ATTTTTTAAAA-AAAAAAACATA
1 ATTTTTTAAAACAAAAAAACATA
*
1860744 AATTTT
1 ATTTTT
1860750 GAACTTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (23 bp):
ATTTTTTAAAACAAAAAAACATA
Found at i:1861306 original size:17 final size:17
Alignment explanation
Indices: 1861284--1861340 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
1861274 CAATTCATAT
* *
1861284 TTTTTCTTTTTTTTTTC
1 TTTTTCTTTCTTTCTTC
1861301 TTTTTCTTTCTTTCTTC
1 TTTTTCTTTCTTTCTTC
** *
1861318 TTCATC-TTCCTTCTT-
1 TTTTTCTTTCTTTCTTC
1861333 TTTTTCTT
1 TTTTTCTT
1861341 ATATAACTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 4 0.12
16 9 0.28
17 19 0.59
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTCTTTCTTTCTTC
Found at i:1864551 original size:2 final size:2
Alignment explanation
Indices: 1864544--1864575 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1864534 TGTAAACTTT
1864544 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1864576 GTTGGAAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1865811 original size:4 final size:4
Alignment explanation
Indices: 1865802--1865850 Score: 62
Period size: 4 Copynumber: 12.2 Consensus size: 4
1865792 TACATTTTTC
* * * *
1865802 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATGT ATGT ATGT ATAT TTAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
1865850 A
1 A
1865851 GCACATTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (4 bp):
ATAT
Found at i:1865813 original size:6 final size:6
Alignment explanation
Indices: 1865802--1865850 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
1865792 TACATTTTTC
* * * *
1865802 ATATAT ATATAT ATATAT ATATAT ATATAT GTATGT ATGTAT ATTTAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
1865850 A
1 A
1865851 GCACATTTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (6 bp):
ATATAT
Found at i:1866169 original size:21 final size:21
Alignment explanation
Indices: 1866114--1866169 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
1866104 TAAAAAATAA
*
1866114 AAAAAAT-AG-AAATTAATTT
1 AAAAAATAAGAAAATGAATTT
*
1866133 TAAAAATCAA-ATAAATGAATTT
1 AAAAAAT-AAGA-AAATGAATTT
1866155 AAAAAATAAGAAAAT
1 AAAAAATAAGAAAAT
1866170 CAAAATCTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
19 6 0.21
21 7 0.24
22 16 0.55
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (21 bp):
AAAAAATAAGAAAATGAATTT
Found at i:1866484 original size:26 final size:24
Alignment explanation
Indices: 1866445--1866547 Score: 86
Period size: 26 Copynumber: 4.2 Consensus size: 24
1866435 TATGTTTTGA
*
1866445 TTTTATTTTGTTTTTTTTGTTTTAT
1 TTTTATTTT-TTTTTTTTATTTTAT
* *
1866470 GTTTTATTTATTTTTGTT-TTTTA-
1 -TTTTATTTTTTTTTTTTATTTTAT
* *
1866493 -TTTATTTTATTTTATTTCATTCTAT
1 TTTTATTTT-TTTT-TTTTATTTTAT
1866518 TTTTATTTTTATTTTTTTAATTTTAT
1 TTTTATTTTT-TTTTTTT-ATTTTAT
1866544 TTTT
1 TTTT
1866548 TATTGTCCTT
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
21 7 0.11
22 4 0.06
23 2 0.03
24 9 0.15
25 11 0.18
26 29 0.47
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.80
Consensus pattern (24 bp):
TTTTATTTTTTTTTTTTATTTTAT
Found at i:1866486 original size:22 final size:20
Alignment explanation
Indices: 1866439--1866505 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 20
1866429 TTGATCTATG
* *
1866439 TTTTGATTTTATTTTGTTT-T
1 TTTTG-TTTTTTTTTATTTAT
1866459 TTTTGTTTTATGTTTTATTTAT
1 TTTTGTTTT-T-TTTTATTTAT
1866481 TTTTGTTTTTTATTTATTTTAT
1 TTTTGTTTTTT-TTTA-TTTAT
1866503 TTT
1 TTT
1866506 ATTTCATTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 4 0.10
20 6 0.15
21 12 0.30
22 18 0.45
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.81
Consensus pattern (20 bp):
TTTTGTTTTTTTTTATTTAT
Found at i:1866501 original size:5 final size:5
Alignment explanation
Indices: 1866439--1866546 Score: 75
Period size: 5 Copynumber: 21.8 Consensus size: 5
1866429 TTGATCTATG
* *
1866439 TTTTGA TTTTA TTTTG TTTT- TTTTG TTTTA TGTTT- TATTTA TTTT-
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA T-TTTA TTTTA
* * *
1866484 TGTT- TTTTA -TTTA TTTTA TTTTA TTTCA TTCTA TTTTTA TTTTTA TTTT-
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTTA
*
1866533 TTTAA TTTTA TTTT
1 TTTTA TTTTA TTTT
1866547 TTATTGTCCT
Statistics
Matches: 84, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
4 17 0.20
5 49 0.58
6 18 0.21
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:1866541 original size:36 final size:34
Alignment explanation
Indices: 1866445--1866545 Score: 105
Period size: 36 Copynumber: 2.8 Consensus size: 34
1866435 TATGTTTTGA
* *
1866445 TTTTATTTTGT-TTTTTTTGTTTTATGTTTTATTTAT
1 TTTTATTTT-TATTTTTTTATTTTA--TTTCATTTAT
*
1866481 TTTTGTTTTTTATTTATTTTATTTTATTTCATTCTAT
1 TTTT-ATTTTTATTT-TTTTATTTTATTTCATT-TAT
1866518 TTTTATTTTTATTTTTTTAATTTTATTT
1 TTTTATTTTTATTTTTTT-ATTTTATTT
1866546 TTTATTGTCC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
35 4 0.07
36 29 0.52
37 14 0.25
38 9 0.16
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (34 bp):
TTTTATTTTTATTTTTTTATTTTATTTCATTTAT
Found at i:1870393 original size:33 final size:33
Alignment explanation
Indices: 1870329--1870421 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 33
1870319 AAAAGATTTA
*
1870329 TTTATATAA-ATATAAA-ATTAA--AT-TAATTT
1 TTTATATAATATAAAAATATTAATCATATAA-TT
* *
1870358 TTTATATGATTTAAAAATATTAATCATATAATT
1 TTTATATAATATAAAAATATTAATCATATAATT
* *
1870391 TTTATATAATATAAAAATATTATTTATATAA
1 TTTATATAATATAAAAATATTAATCATATAA
1870422 AATATTATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
29 8 0.15
30 5 0.10
31 5 0.10
33 31 0.60
34 3 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (33 bp):
TTTATATAATATAAAAATATTAATCATATAATT
Found at i:1870700 original size:24 final size:24
Alignment explanation
Indices: 1870632--1870700 Score: 57
Period size: 30 Copynumber: 2.6 Consensus size: 24
1870622 AATTAGATGC
1870632 AAAATATTATATTTATATAAATTTA
1 AAAATATT-TATTTATATAAATTTA
* *
1870657 AAAATTAATAATTAATTTTATTTAAATTTT
1 AAAA-T-AT--TT-A-TTTATATAAATTTA
1870687 AAAATATTTATTTA
1 AAAATATTTATTTA
1870701 ATCATATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
24 4 0.11
25 5 0.14
26 3 0.08
27 2 0.06
28 3 0.08
29 3 0.08
30 16 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
AAAATATTTATTTATATAAATTTA
Found at i:1871231 original size:19 final size:19
Alignment explanation
Indices: 1871209--1871248 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
1871199 TAATCATGTT
1871209 ATATTTATTGTTTTGAGTA
1 ATATTTATTGTTTTGAGTA
1871228 ATATTTATTGTTTTGAGTA
1 ATATTTATTGTTTTGAGTA
1871247 AT
1 AT
1871249 GTTGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (19 bp):
ATATTTATTGTTTTGAGTA
Found at i:1871590 original size:25 final size:25
Alignment explanation
Indices: 1871561--1871641 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
1871551 ATAAGATGTT
1871561 TAATTGGTACTATTTAGATAACTTC
1 TAATTGGTACTATTTAGATAACTTC
* * **
1871586 CAATT-TTA-TAGCTAGATAACTGTGTC
1 TAATTGGTACTATTTAGATAAC--T-TC
1871612 TAATTGGTACTATTTAGATAACTTC
1 TAATTGGTACTATTTAGATAACTTC
1871637 TAATT
1 TAATT
1871642 CTATATCACA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
23 10 0.23
24 2 0.05
25 12 0.28
26 7 0.16
27 2 0.05
28 10 0.23
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (25 bp):
TAATTGGTACTATTTAGATAACTTC
Found at i:1872168 original size:9 final size:10
Alignment explanation
Indices: 1872154--1872208 Score: 53
Period size: 9 Copynumber: 5.6 Consensus size: 10
1872144 TTAAAAAATA
1872154 TTATA-TTAT
1 TTATATTTAT
1872163 TTATATTTAT
1 TTATATTTAT
*
1872173 TTA-ATTTAA
1 TTATATTTAT
*
1872182 TTATCATAT-T
1 TTAT-ATTTAT
1872192 TTATATTTTAT
1 TTATA-TTTAT
1872203 TTATAT
1 TTATAT
1872209 AGATTATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
9 14 0.38
10 14 0.38
11 9 0.24
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (10 bp):
TTATATTTAT
Found at i:1873996 original size:22 final size:22
Alignment explanation
Indices: 1873971--1874013 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1873961 GAAAAAAATC
1873971 AAAATATAATACG-ATATGATAT
1 AAAA-ATAATACGAATATGATAT
*
1873993 AAAAATAATATGAATATGATA
1 AAAAATAATACGAATATGATA
1874014 CAAATATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.30
Consensus pattern (22 bp):
AAAAATAATACGAATATGATAT
Found at i:1874300 original size:11 final size:12
Alignment explanation
Indices: 1874276--1874323 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
1874266 ACATAACACG
1874276 AAAA-AATATCAA
1 AAAATAATAT-AA
1874288 AAAATAAT-TAA
1 AAAATAATATAA
*
1874299 AATATAATATAA
1 AAAATAATATAA
1874311 AAAATAATATAA
1 AAAATAATATAA
1874323 A
1 A
1874324 TACGACACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 9 0.28
12 20 0.62
13 3 0.09
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:1874467 original size:28 final size:29
Alignment explanation
Indices: 1874416--1874470 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
1874406 TTAAATATAA
*
1874416 AAAAAATAACATGAATATATATACAAAAT
1 AAAAAATAACATGAATACATATACAAAAT
1874445 AAAAAATAACATGAATACA-ATACAAA
1 AAAAAATAACATGAATACATATACAAA
1874471 GTTTATATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.67, C:0.09, G:0.04, T:0.20
Consensus pattern (29 bp):
AAAAAATAACATGAATACATATACAAAAT
Found at i:1874610 original size:16 final size:16
Alignment explanation
Indices: 1874568--1874624 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
1874558 AATATTTAAA
1874568 TTTTCTCTTTTC-TTTC
1 TTTTCT-TTTTCTTTTC
* * *
1874584 ATCTCTCTTTCTTTTC
1 TTTTCTTTTTCTTTTC
*
1874600 TTTTCTTTTTCTTATCC
1 TTTTCTTTTTCTT-TTC
1874617 TTTTCTTT
1 TTTTCTTT
1874625 CGTTTATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 4 0.12
16 18 0.56
17 10 0.31
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTCTTTTTCTTTTC
Found at i:1875185 original size:15 final size:16
Alignment explanation
Indices: 1875165--1875195 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1875155 AAACATATTA
1875165 TATATTT-TTTAATTT
1 TATATTTATTTAATTT
1875180 TATATTTATTTAATTT
1 TATATTTATTTAATTT
1875196 ATTTAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATATTTATTTAATTT
Found at i:1875523 original size:24 final size:26
Alignment explanation
Indices: 1875475--1875524 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
1875465 AAAATTTAAT
* *
1875475 TTTATAAATATATTTAATAATTAAAA
1 TTTAAAAATATATTTAATAACTAAAA
1875501 TTTAAAAATATATTT-A-AACTAAAA
1 TTTAAAAATATATTTAATAACTAAAA
1875525 AAATGAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 1 0.05
26 14 0.64
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
TTTAAAAATATATTTAATAACTAAAA
Found at i:1886145 original size:51 final size:51
Alignment explanation
Indices: 1886076--1886417 Score: 169
Period size: 51 Copynumber: 6.6 Consensus size: 51
1886066 ATAAGGCAAG
* * * *
1886076 GGTTGAAGTGTCCCCGATTATAGAAAATTGGTGTTTT-GAAAATAAAATCGA
1 GGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTAG-AAATAAAACCGA
* * * *
1886127 GGTTTGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTAGAAATAAAACCGA
* * * * * * *
1886178 GGTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTGGAAATAAAGCTGG
1 GGTTGGAGTATCCCCGATTATAGA-AAATTAGTGTTTTAGAAATAAAACCGA
** ** ** * ** * *
1886229 GGTTGGAGTATCCCC--TCGTAGCTAA-CGGGGTTGGAGTATCCCCGATGAAATAACGA
1 GGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTAG-A-----AAT-AAA-ACCGA
** * * * *
1886285 GGTTGGAGTATCATCGATTGT-GAAAAATTGGTGTTTTTGGAAATAAAATCG-
1 GGTTGGAGTATCCCCGATTATAG-AAAATTAGTG-TTTTAGAAATAAAACCGA
* * * *
1886336 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGGAAATAAAACCGA
1 G-GTTGGAGTATCCCCGATTATA-GAAAATTAGTGTTTTAGAAATAAAACCGA
1886389 GGTTGGAGTATCCCCGATTAT-GAACAATT
1 GGTTGGAGTATCCCCGATTATAGAA-AATT
1886418 GAGAAACTTA
Statistics
Matches: 219, Mismatches: 51, Indels: 42
0.70 0.16 0.13
Matches are distributed among these distances:
48 4 0.02
49 5 0.02
50 6 0.03
51 101 0.46
52 55 0.25
53 13 0.06
54 5 0.02
55 3 0.01
56 14 0.06
57 1 0.00
58 5 0.02
59 4 0.02
60 3 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTAGAAATAAAACCGA
Found at i:1886355 original size:52 final size:51
Alignment explanation
Indices: 1886282--1886418 Score: 168
Period size: 52 Copynumber: 2.6 Consensus size: 51
1886272 GATGAAATAA
** * * *
1886282 CGAGGTTGGAGTATCATCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGCG-TTTTGGAAATAAAAC
* *
1886334 CG-GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGGAAATAAAAC
1 CGAG-GTTGGAGTATCCCCGATT-ATGAAAAATTGGCGTTTTGGAAATAAAAC
*
1886386 CGAGGTTGGAGTATCCCCGATTATGAACAATTG
1 CGAGGTTGGAGTATCCCCGATTATGAAAAATTG
1886419 AGAAACTTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
51 9 0.12
52 52 0.72
53 11 0.15
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (51 bp):
CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGCGTTTTGGAAATAAAAC
Found at i:1888842 original size:19 final size:19
Alignment explanation
Indices: 1888818--1888913 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
1888808 AGCGATACAT
1888818 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1888837 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
1888850 TCTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1888869 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
1888882 TCTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1888901 TGTATCGATACAA
1 TGTATCGATACAA
1888914 ATCGCTAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 24
0.69 0.04 0.27
Matches are distributed among these distances:
13 16 0.26
14 2 0.03
16 12 0.20
18 2 0.03
19 29 0.48
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1888856 original size:32 final size:32
Alignment explanation
Indices: 1888810--1888912 Score: 197
Period size: 32 Copynumber: 3.2 Consensus size: 32
1888800 AGCTTTATAG
*
1888810 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTCTATCGATACAACACTTATGTAT
1888842 CGATACATTCTATCGATACAACACTTATGTAT
1 CGATACATTCTATCGATACAACACTTATGTAT
1888874 CGATACATTCTATCGATACAACACTTATGTAT
1 CGATACATTCTATCGATACAACACTTATGTAT
1888906 CGATACA
1 CGATACA
1888913 AATCGCTAAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 70 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (32 bp):
CGATACATTCTATCGATACAACACTTATGTAT
Found at i:1889654 original size:42 final size:41
Alignment explanation
Indices: 1889608--1889697 Score: 92
Period size: 42 Copynumber: 2.1 Consensus size: 41
1889598 CCCATTTTTC
* *
1889608 GAGGACAAAGAAAAAAGGGAAACGAA-GTACGTCCTGCTCTTT
1 GAGGACAAAG-AAAAA-GGAAAAGAAGGTACATCCTGCTCTTT
* * * *
1889650 GAGGATGAAAGAAAGAGGAAAATAAGGTGCATCCTGCTCTTT
1 GAGGA-CAAAGAAAAAGGAAAAGAAGGTACATCCTGCTCTTT
1889692 GAGGAC
1 GAGGAC
1889698 TAAAAAGTGC
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
41 7 0.18
42 28 0.72
43 4 0.10
ACGTcount: A:0.39, C:0.14, G:0.29, T:0.18
Consensus pattern (41 bp):
GAGGACAAAGAAAAAGGAAAAGAAGGTACATCCTGCTCTTT
Found at i:1890141 original size:55 final size:56
Alignment explanation
Indices: 1889681--1890630 Score: 1057
Period size: 55 Copynumber: 16.4 Consensus size: 56
1889671 ATAAGGTGCA
* *
1889681 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAAC-TGATGTGGGCTTTGAAACGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTG-TGTGGGCTTT-----GAAAAGGCG
* * * * *
1889742 TCTTGCTTTTTGGGGACTGGAAGGTGCCACCAACTTATGTGGGCTTTGCAAAGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG---A--AAAGGCG
* * *
1889803 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAGAGAGAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---GA-A-AAGGCG
*
1889864 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA----AGGCG
*
1889924 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGTGAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA---AGGCG
* * *
1889984 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTGGTGTGGGCTTTGCAAAGAGAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AG---GCG
* *
1890045 TCCTGCACTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* * * *
1890100 TCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTATGTGGG-TTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* * *
1890155 TCCTACTCTTTAAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
*
1890210 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* *
1890265 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAA-GCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
*
1890320 TCCTGCTCTTTGAGGACTAGGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGGCG
1 TCCTGCTCTTTGAGGACT--GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
*
1890376 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTGGTGTGGGCTTTG-AAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* * *
1890431 TCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAATGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA--AG---GCG
*
1890492 TCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* ** *
1890547 TCCTGCTCTTTGAGGATTGAAAATTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--A--A-AAGGCG
1890608 TCCTGCTCTTTGAGGACT-AAAGG
1 TCCTGCTCTTTGAGGACTGAAAGG
1890631 GCGAAAGGAG
Statistics
Matches: 781, Mismatches: 65, Indels: 87
0.84 0.07 0.09
Matches are distributed among these distances:
54 12 0.02
55 320 0.41
56 64 0.08
57 1 0.00
58 11 0.01
59 7 0.01
60 111 0.14
61 247 0.32
62 7 0.01
64 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (56 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
Found at i:1890678 original size:100 final size:100
Alignment explanation
Indices: 1890544--1890728 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 100
1890534 GCTTTGAAAG
* * * * * **
1890544 GCGTCCTGCTCTTTGAGGATTGAAAATTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGTGT
1 GCGTCCTACTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCAT
1890609 CCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGA
66 CCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGA
*
1890644 GCGTCCTACTCTTTGAGGATT-AGGAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCA
1 GCGTCCTACTCTTTGAGGATTGA-AAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCA
1890708 TCCTGCTCTTTGAGGACTAAA
65 TCCTGCTCTTTGAGGACTAAA
1890729 AAGTGGAAGG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 1 0.01
100 75 0.99
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (100 bp):
GCGTCCTACTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCAT
CCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGA
Found at i:1891715 original size:9 final size:8
Alignment explanation
Indices: 1891682--1891770 Score: 60
Period size: 9 Copynumber: 10.8 Consensus size: 8
1891672 AAGCAGATTC
*
1891682 TTTTTCTT
1 TTTTTGTT
1891690 TTTTT-TT
1 TTTTTGTT
1891697 TCTCTTT-TT
1 T-T-TTTGTT
*
1891706 TCTTTGTT
1 TTTTTGTT
1891714 TTGTTT-TT
1 TT-TTTGTT
1891722 TTTTTGTT
1 TTTTTGTT
*
1891730 TTTTTATTT
1 TTTTT-GTT
1891739 TTTTTGTT
1 TTTTTGTT
1891747 GTTGTTT-TT
1 -TT-TTTGTT
1891756 TTTTTGGTT
1 TTTTT-GTT
1891765 TTTTTG
1 TTTTTG
1891771 AAAAAGAATG
Statistics
Matches: 67, Mismatches: 4, Indels: 20
0.74 0.04 0.22
Matches are distributed among these distances:
7 12 0.18
8 25 0.37
9 27 0.40
10 3 0.04
ACGTcount: A:0.01, C:0.04, G:0.10, T:0.84
Consensus pattern (8 bp):
TTTTTGTT
Found at i:1891723 original size:17 final size:16
Alignment explanation
Indices: 1891682--1891766 Score: 89
Period size: 17 Copynumber: 4.9 Consensus size: 16
1891672 AAGCAGATTC
* *
1891682 TTTTTCTTTTTTTTTTC
1 TTTTT-TTTTTGTTTTG
1891699 TCTTTTTTCTTTGTTTTG
1 T-TTTTTT-TTTGTTTTG
*
1891717 TTTTTTTTTTGTTTTT
1 TTTTTTTTTTGTTTTG
1891733 TTATTTTTTTTGTTGTTG
1 TT-TTTTTTTTGTT-TTG
1891751 TTTTTTTTTTGGTTTT
1 TTTTTTTTTT-GTTTT
1891767 TTTGAAAAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
16 10 0.17
17 30 0.51
18 19 0.32
ACGTcount: A:0.01, C:0.05, G:0.09, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTTGTTTTG
Found at i:1891732 original size:28 final size:27
Alignment explanation
Indices: 1891683--1891760 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 27
1891673 AGCAGATTCT
* *
1891683 TTTTCTTTTTTTTTTCTCTTTTTTCTTTG
1 TTTTGTTTTTTTTTT-T-TTTTTTATTTG
*
1891712 TTTTGTTTTTTTTTTGTTTTTTTATTTT
1 TTTTGTTTTTTTTTT-TTTTTTTATTTG
* *
1891740 TTTTGTTGTTGTTTTTTTTTT
1 TTTTGTTTTTTTTTTTTTTTT
1891761 GGTTTTTTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 6 0.14
28 22 0.51
29 15 0.35
ACGTcount: A:0.01, C:0.05, G:0.08, T:0.86
Consensus pattern (27 bp):
TTTTGTTTTTTTTTTTTTTTTTATTTG
Found at i:1891740 original size:20 final size:19
Alignment explanation
Indices: 1891682--1891760 Score: 77
Period size: 20 Copynumber: 4.0 Consensus size: 19
1891672 AAGCAGATTC
*
1891682 TTTTTCTTTTTTTTTTCTCT
1 TTTTTCTTTTTTTTTT-TTT
*
1891702 TTTTTCTTTGTTTTGTTTTT
1 TTTTTCTTT-TTTTTTTTTT
*
1891722 TTTTTGTTTTTTTATTTTTT
1 TTTTTCTTTTTTT-TTTTTT
* * *
1891742 TTGTTGTTGTTTTTTTTTT
1 TTTTTCTTTTTTTTTTTTT
1891761 GGTTTTTTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
19 10 0.20
20 35 0.69
21 6 0.12
ACGTcount: A:0.01, C:0.05, G:0.08, T:0.86
Consensus pattern (19 bp):
TTTTTCTTTTTTTTTTTTT
Found at i:1891740 original size:34 final size:35
Alignment explanation
Indices: 1891702--1891769 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 35
1891692 TTTTTTCTCT
1891702 TTTTTCTTTGTT-TTGTTTTTTTTTT-GTTTTTTTA
1 TTTTT-TTTGTTGTTGTTTTTTTTTTGGTTTTTTTA
1891736 TTTTTTTTGTTGTTGTTTTTTTTTTGGTTTTTTT
1 TTTTTTTTGTTGTTGTTTTTTTTTTGGTTTTTTT
1891770 GAAAAAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 6 0.19
34 18 0.56
35 8 0.25
ACGTcount: A:0.01, C:0.01, G:0.12, T:0.85
Consensus pattern (35 bp):
TTTTTTTTGTTGTTGTTTTTTTTTTGGTTTTTTTA
Found at i:1891766 original size:11 final size:10
Alignment explanation
Indices: 1891682--1891769 Score: 54
Period size: 11 Copynumber: 8.3 Consensus size: 10
1891672 AAGCAGATTC
*
1891682 TTTTTCTTTT
1 TTTTTGTTTT
*
1891692 TTTTT-TCTCT
1 TTTTTGT-TTT
*
1891702 TTTTT-CTTT
1 TTTTTGTTTT
*
1891711 GTTTTGTTTTT
1 TTTTTG-TTTT
1891722 TTTTTGTTTT
1 TTTTTGTTTT
*
1891732 TTTATTTTTTT
1 TTT-TTGTTTT
1891743 TGTTGTTGTTTTT
1 T-TT-TTG-TTTT
1891756 TTTTTGGTTTT
1 TTTTT-GTTTT
1891767 TTT
1 TTT
1891770 GAAAAAGAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
9 7 0.11
10 19 0.31
11 24 0.39
12 7 0.11
13 5 0.08
ACGTcount: A:0.01, C:0.05, G:0.09, T:0.85
Consensus pattern (10 bp):
TTTTTGTTTT
Found at i:1891769 original size:1 final size:1
Alignment explanation
Indices: 1891682--1891760 Score: 59
Period size: 1 Copynumber: 79.0 Consensus size: 1
1891672 AAGCAGATTC
* * * * * * * * *
1891682 TTTTTCTTTTTTTTTTCTCTTTTTTCTTTGTTTTGTTTTTTTTTTGTTTTTTTATTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
1891747 GTTGTTTTTTTTTT
1 TTTTTTTTTTTTTT
1891761 GGTTTTTTTG
Statistics
Matches: 56, Mismatches: 22, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.01, C:0.05, G:0.08, T:0.86
Consensus pattern (1 bp):
T
Found at i:1903290 original size:13 final size:13
Alignment explanation
Indices: 1903272--1903296 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1903262 CATAAAGTGT
1903272 TGTATCGATACAA
1 TGTATCGATACAA
1903285 TGTATCGATACA
1 TGTATCGATACA
1903297 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1903294 original size:33 final size:33
Alignment explanation
Indices: 1903252--1903318 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1903242 TTCAACGATT
1903252 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1903285 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1903318 T
1 T
1903319 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1903377 original size:13 final size:13
Alignment explanation
Indices: 1903359--1903383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1903349 ATTACTCAAA
1903359 TGTATCGATACAT
1 TGTATCGATACAT
1903372 TGTATCGATACA
1 TGTATCGATACA
1903384 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1903485 original size:52 final size:52
Alignment explanation
Indices: 1903392--1903519 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
1903382 CACTGATCTT
*
1903392 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
1903443 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1903495 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1903520 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:1910757 original size:18 final size:18
Alignment explanation
Indices: 1910724--1910759 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1910714 TAATCTTCAC
* *
1910724 AAAAAAAAAGATGAAAAA
1 AAAAAAAAAAAAGAAAAA
1910742 AAAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAGAAAAA
1910760 CCCCTTTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.89, C:0.00, G:0.08, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAAAAGAAAAA
Done.