Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1335
Parameters: 2 7 7 80 10 50 1000
Length:  53465

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2034--2064
9
3.4
9
95
0
53
25
35
0
38
1.56
3651--3701
20
2.6
20
87
9
70
27
13
17
41
1.87
3756--3808
20
2.7
20
87
0
88
35
18
16
28
1.93
4893--4918
13
2.0
13
100
0
52
38
15
15
30
1.88
8780--8846
33
2.0
33
100
0
134
31
17
26
23
1.97
14019--14070
20
2.7
20
90
3
79
26
13
21
38
1.90
14112--14164
20
2.6
21
82
8
65
30
16
15
37
1.90
14152--14176
13
1.9
13
100
0
50
36
16
16
32
1.90
15476--17059
155
10.3
155
80
4
1447
24
17
20
37
1.93
15500--17059
308
5.1
307
81
4
1554
24
17
20
37
1.93
15513--17059
615
2.5
610
83
3
1793
24
17
20
37
1.93
18753--18997
41
5.9
41
73
11
169
16
23
15
44
1.85
18757--18966
84
2.5
83
80
4
237
16
24
15
44
1.86
20481--20510
14
2.1
15
93
6
53
33
3
0
63
1.11
20792--20836
23
2.0
23
82
8
56
68
0
31
0
0.89
20831--20857
11
2.5
11
100
0
54
77
0
14
7
0.97
21721--21764
22
2.0
22
90
0
70
63
9
22
4
1.42
23308--24549
154
8.0
152
79
6
855
24
17
19
38
1.92
22935--24549
308
5.2
307
80
5
1526
23
16
20
38
1.92
23126--24494
155
8.9
155
78
7
790
23
17
20
38
1.93
33576--33625
11
4.6
11
73
14
50
56
6
0
38
1.24
33576--33637
32
2.0
31
87
3
88
56
6
0
37
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33789--33836
24
2.0
24
84
4
62
66
2
2
29
1.14
37650--37675
12
2.2
12
100
0
52
15
30
11
42
1.82
39113--39167
20
2.8
20
97
0
101
30
14
18
36
1.91
40259--40310
21
2.4
22
84
12
72
15
25
1
57
1.48
41904--41999
36
2.9
31
81
14
104
30
26
12
31
1.93
41914--41999
36
2.6
34
83
14
108
32
26
12
27
1.93
42377--42429
20
2.7
20
90
0
79
37
11
9
41
1.73
46231--46307
20
3.9
19
86
6
91
35
14
12
37
1.84
46320--46376
20
2.8
20
81
0
69
42
15
12
29
1.84
46200--46376
91
1.9
92
86
3
250
39
14
14
31
1.86
46251--46387
71
1.9
71
87
0
202
40
14
13
31
1.84
46901--47018
59
2.0
59
83
3
148
42
12
14
30
1.83
50608--50645
19
2.0
19
89
0
58
68
2
0
28
1.03
50885--50924
20
2.0
20
85
4
55
30
7
5
57
1.48
51097--51144
19
2.5
19
83
12
55
10
14
0
75
1.06
51161--51219
15
3.7
15
78
17
57
57
0
0
42
0.98
51177--51217
16
2.6
17
81
14
52
58
0
0
41
0.98
51429--51470
13
3.2
13
86
6
59
47
0
0
52
1.00
51948--51996
15
3.1
15
79
5
53
36
0
0
63
0.95

Tables:   1

The End!