Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1336
Parameters: 2 7 7 80 10 50 1000
Length:  32331

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13--61
3
16.3
3
100
0
98
32
34
0
32
1.58
1653--1701
13
4.2
13
73
24
54
36
20
12
30
1.89
1653--1722
33
2.1
34
84
7
90
35
20
11
32
1.88
1751--1806
19
2.9
19
91
2
85
33
17
17
30
1.94
1791--1817
13
2.1
13
100
0
54
40
14
14
29
1.86
3253--3310
32
1.9
30
83
16
75
43
22
5
29
1.75
3814--4007
62
3.1
62
91
0
307
22
19
15
42
1.89
4363--4431
33
2.1
33
88
0
102
47
10
21
20
1.79
12197--12229
16
2.1
16
100
0
66
36
6
30
27
1.81
12512--12548
17
2.1
17
90
5
56
62
0
8
29
1.24
12597--12653
27
2.1
27
80
6
62
54
0
1
43
1.10
23442--23486
3
15.0
3
95
0
81
33
0
2
64
1.06
24349--24414
9
6.9
10
68
14
50
22
4
1
71
1.13
24241--24489
138
1.8
138
92
3
421
19
7
4
68
1.33
24348--24415
7
8.4
8
71
26
54
22
4
1
72
1.11
27494--27529
15
2.4
15
90
0
54
27
8
11
52
1.65
28454--28788
97
3.5
97
88
3
505
28
11
29
29
1.92
30196--30220
13
1.9
13
100
0
50
40
12
32
16
1.84
30954--31054
32
3.2
32
86
5
118
16
18
35
28
1.93
30959--31564
57
10.5
55
82
8
617
23
17
30
29
1.97
30959--31589
28
21.9
28
83
8
648
24
17
29
28
1.97
31022--31587
85
6.6
85
83
7
641
25
16
28
28
1.97

Tables:   1

The End!