genome.fa.s1338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1338
Parameters: 2 7 7 80 10 50 1000
Length:  96590

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4115--4192	1	78.0	1	74	0	57	85	14	0	0	0.59
4115--4192	19	4.3	18	77	22	83	85	14	0	0	0.59
4116--4189	25	3.0	25	84	15	100	85	14	0	0	0.61
5630--5948	30	10.7	30	81	8	314	29	28	16	25	1.97
5694--5913	123	1.8	121	84	5	300	29	30	15	24	1.96
5992--6282	48	6.0	48	76	11	254	25	24	16	32	1.96
6090--6174	42	2.0	41	90	2	134	27	24	18	29	1.98
6041--6219	93	1.9	91	89	4	279	26	23	17	32	1.96
11157--11230	20	3.7	20	81	3	103	35	13	20	31	1.91
11175--11250	21	3.7	21	82	3	109	40	11	18	28	1.86
11157--11250	41	2.3	41	100	0	188	38	12	19	29	1.89
11289--11314	13	2.0	13	100	0	52	38	15	15	30	1.88
11771--11837	37	1.9	35	88	11	102	32	11	25	29	1.92
14997--15021	13	1.9	13	100	0	50	36	16	16	32	1.90
16825--16898	20	3.7	20	81	3	103	35	13	20	31	1.91
16843--16918	21	3.7	21	82	3	109	40	11	18	28	1.86
16825--16918	41	2.3	41	100	0	188	38	12	19	29	1.89
16957--16982	13	2.0	13	100	0	52	38	15	15	30	1.88
17440--17506	37	1.9	35	88	11	102	32	11	25	29	1.92
18182--18248	37	1.9	35	88	11	102	29	25	11	32	1.92
18721--18756	13	2.8	13	91	0	54	38	19	11	30	1.86
18821--18860	21	1.9	21	100	0	80	37	10	22	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18963--19033	20	3.5	20	77	11	74	29	14	16	39	1.88
22217--22381	84	2.0	84	82	7	201	24	19	3	52	1.62
23898--23964	37	1.9	35	88	11	102	29	25	11	32	1.92
24436--24471	13	2.8	13	91	0	54	38	19	11	30	1.86
24536--24575	21	1.9	21	100	0	80	37	10	22	30	1.87
24678--24748	20	3.5	20	77	11	74	29	14	16	39	1.88
25572--25596	11	2.3	11	100	0	50	52	0	0	48	1.00
29937--29967	14	2.2	14	94	0	53	51	0	0	48	1.00
30793--30854	32	1.9	33	86	3	90	33	16	14	35	1.89
32743--33262	56	9.3	54	74	11	304	41	15	19	23	1.89
32771--33270	168	3.0	167	77	8	413	42	15	19	23	1.89
33960--34000	21	2.0	21	85	9	57	34	4	4	56	1.42
35543--35598	19	2.9	18	78	14	67	33	17	14	33	1.90
35584--35610	13	2.1	13	100	0	54	40	14	14	29	1.86
35565--35628	32	2.0	32	87	9	94	39	17	15	28	1.90
36238--36280	21	2.1	20	91	4	68	25	27	0	46	1.53
36238--36295	20	2.8	21	81	5	73	31	25	0	43	1.55
36242--36309	20	3.3	19	73	17	55	29	23	0	47	1.52
37948--37973	13	2.0	13	100	0	52	38	15	15	30	1.88
40188--40232	21	2.1	21	84	8	56	53	4	20	22	1.63
44075--44154	20	3.8	20	75	15	79	26	15	15	43	1.85
44140--44178	13	3.0	13	96	0	69	30	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46355--46380	13	2.0	13	100	0	52	38	15	15	30	1.88
47732--47766	13	2.7	13	86	0	52	37	17	14	31	1.89
54077--54114	20	1.9	20	100	0	76	21	7	21	50	1.74
54538--54579	19	2.2	19	86	4	57	78	0	21	0	0.75
54549--54573	12	2.1	12	100	0	50	84	0	16	0	0.63
55728--55984	136	1.9	135	87	7	378	31	12	21	33	1.91
56617--56648	14	2.3	15	89	10	50	0	15	3	81	0.82
59927--59962	18	2.0	18	94	0	63	30	22	13	33	1.93
61111--61228	52	2.3	51	82	7	141	33	10	23	32	1.88
61233--61288	28	2.0	28	85	0	76	33	19	26	19	1.96
61321--61392	28	2.6	27	91	8	110	27	19	29	23	1.98
61215--61476	107	2.4	106	87	6	373	33	17	24	25	1.96
61460--61603	51	2.8	51	76	2	146	34	13	22	29	1.92
63933--63994	21	3.0	21	86	6	83	40	12	16	30	1.86
63960--64006	21	2.3	21	85	3	60	46	17	12	23	1.82
64493--64548	28	2.0	28	96	0	103	42	14	23	19	1.88
66946--67049	20	5.7	20	76	17	75	28	15	14	41	1.86
66965--67029	32	2.0	32	93	0	112	29	13	13	43	1.83
68096--68213	51	2.3	51	82	0	137	32	11	27	28	1.92
68147--68587	79	5.6	79	82	2	467	33	12	24	28	1.93
68147--68588	236	1.9	237	85	2	620	33	12	24	28	1.92
70903--70940	20	1.9	20	94	0	67	50	10	18	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71622--71703	41	2.0	42	90	2	130	43	13	23	19	1.86
71701--72207	61	8.4	60	82	7	510	28	17	27	26	1.98
71729--72199	120	3.9	120	84	7	584	28	17	27	26	1.98
71724--72199	181	2.6	178	83	7	572	28	18	26	26	1.98
73203--73240	15	2.4	16	84	16	53	2	10	0	86	0.66
73203--73240	17	2.3	16	83	16	51	2	10	0	86	0.66
85541--85716	79	2.2	79	81	4	194	36	13	21	28	1.91
85677--85788	51	2.2	51	85	0	143	32	12	25	29	1.93
85722--85876	78	2.0	79	82	3	188	33	10	23	31	1.90
86502--86556	20	2.8	20	82	0	65	30	18	9	41	1.81

Tables:   1

The End!