genome.fa.s1339.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1339
Parameters: 2 7 7 80 10 50 1000
Length:  77321

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5194--5224	15	2.1	15	100	0	62	35	38	0	25	1.56
6410--6532	31	4.0	30	72	5	102	20	23	27	28	1.99
6479--6825	149	2.3	148	83	1	435	20	21	25	32	1.98
6741--6811	31	2.3	31	85	2	99	15	26	30	26	1.96
7081--7161	34	2.3	36	82	4	94	34	9	33	22	1.87
8263--8311	15	3.5	13	76	17	53	10	0	6	83	0.80
9298--10315	340	3.0	339	87	2	1497	25	21	17	36	1.95
16934--16959	13	2.0	13	100	0	52	38	15	15	30	1.88
21808--21863	20	2.7	21	83	10	71	41	14	17	26	1.88
21935--21989	20	2.7	21	88	5	85	30	18	12	38	1.88
24119--24149	13	2.4	13	94	0	53	38	9	16	35	1.81
24097--24165	33	2.1	33	89	5	104	39	14	13	33	1.85
24193--24248	19	2.8	20	84	12	80	35	17	14	32	1.90
24236--24260	13	1.9	13	100	0	50	40	16	16	28	1.89
24215--24279	32	2.0	33	88	8	98	41	15	15	27	1.87
27875--27905	13	2.4	13	94	0	53	38	9	16	35	1.81
27853--27921	33	2.1	33	89	5	104	39	14	13	33	1.85
27949--28004	19	2.8	20	84	12	80	35	17	14	32	1.90
27992--28016	13	1.9	13	100	0	50	40	16	16	28	1.89
27971--28035	32	2.0	33	88	8	98	41	15	15	27	1.87
30065--30095	13	2.4	13	94	0	53	38	9	16	35	1.81
30043--30111	33	2.1	33	83	5	86	40	17	10	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30140--30214	20	3.8	20	89	3	107	34	18	14	32	1.91
30817--30858	22	1.9	22	95	0	75	21	35	4	38	1.75
31472--31518	22	2.1	22	100	0	94	23	25	31	19	1.98
36675--36717	21	2.1	20	86	4	59	25	16	6	51	1.69
38939--38992	20	2.7	20	91	5	83	37	18	12	31	1.89
39021--39076	19	2.9	19	89	2	76	35	16	16	32	1.90
39061--39109	13	3.5	13	79	15	62	36	18	12	32	1.88
46995--47041	21	2.4	19	85	7	58	34	12	10	42	1.78
48129--48242	51	2.3	51	85	1	158	30	14	9	44	1.78
49100--49140	21	2.0	21	90	9	66	21	24	17	36	1.94
50565--50589	13	1.9	13	100	0	50	32	16	16	36	1.90
50577--50629	20	2.6	21	82	8	65	37	15	15	32	1.88
56800--56824	13	1.9	13	100	0	50	32	16	16	36	1.90
57266--57310	20	2.1	22	84	8	58	17	46	28	6	1.73
59303--59355	20	2.6	21	82	8	65	37	15	16	30	1.90
59361--59393	11	3.0	11	100	0	66	18	18	36	27	1.94
59426--59451	13	2.0	13	100	0	52	38	15	15	30	1.88
59408--59471	33	2.0	32	87	3	92	39	18	14	28	1.90
61006--61041	17	2.1	17	89	0	54	83	0	16	0	0.65
67456--67536	36	2.3	35	81	10	85	71	9	13	4	1.28
67790--67817	14	2.0	14	100	0	56	85	14	0	0	0.59
68869--69660	27	28.9	27	90	2	1190	23	33	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68869--69660	55	14.5	54	91	2	1190	23	33	14	29	1.93
68869--69660	82	9.6	81	91	3	1192	23	33	14	29	1.93
69646--70088	32	13.8	32	94	0	726	31	33	18	16	1.93
71331--71366	17	2.1	17	89	0	54	83	0	16	0	0.65

Tables:   1

The End!