Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold134
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 811437
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
File 1 of 5
Found at i:6121 original size:6 final size:7
Alignment explanation
Indices: 1--9833 Score: 7466
Period size: 7 Copynumber: 1375.0 Consensus size: 7
*
1 ACCCGAC
1 ACCCGAA
8 ACCCGAA
1 ACCCGAA
15 ACCCGAA
1 ACCCGAA
*
22 TAACCGAA
1 -ACCCGAA
**
30 ACCCGCC
1 ACCCGAA
37 ACCCGAA
1 ACCCGAA
44 ATCCCG-A
1 A-CCCGAA
51 ACCCGAA
1 ACCCGAA
58 ACCCGAA
1 ACCCGAA
65 ACCCGAA
1 ACCCGAA
72 ACCCGAA
1 ACCCGAA
79 A-CCGAA
1 ACCCGAA
85 ACCCGAA
1 ACCCGAA
92 ACCCTG-A
1 ACCC-GAA
99 ACCCGAA
1 ACCCGAA
106 ACCCGAA
1 ACCCGAA
113 ACCCGAA
1 ACCCGAA
120 A-CCGAA
1 ACCCGAA
126 ACCCGAA
1 ACCCGAA
133 A-CCGAA
1 ACCCGAA
*
139 ACCCTTAA
1 ACCC-GAA
147 ACCCGAAA
1 ACCCG-AA
155 ACCCGAAA
1 ACCCG-AA
163 ACCCGAA
1 ACCCGAA
*
170 CCCCGAA
1 ACCCGAA
*
177 ACCCTAA
1 ACCCGAA
184 ACCCGAA
1 ACCCGAA
191 ACCCGAA
1 ACCCGAA
*
198 ACCCGCA
1 ACCCGAA
*
205 A-CCGCA
1 ACCCGAA
*
211 ACCC-TA
1 ACCCGAA
217 ACCC-AA
1 ACCCGAA
223 ACCCTGAA
1 ACCC-GAA
231 TACCCGAA
1 -ACCCGAA
239 ACCCG-A
1 ACCCGAA
245 ACCCG-A
1 ACCCGAA
251 ACCCGAA
1 ACCCGAA
258 ACCCGAA
1 ACCCGAA
*
265 A-CC-TA
1 ACCCGAA
270 ACCCG-A
1 ACCCGAA
**
276 ACCCCTA
1 ACCCGAA
283 ACCCTGAA
1 ACCC-GAA
291 TACTCTCGGAA
1 -AC-C-C-GAA
302 ACCCGAA
1 ACCCGAA
*
309 TCCTCGAA
1 ACC-CGAA
317 ATCCCGAA
1 A-CCCGAA
325 ACCCGGAAA
1 ACCC-G-AA
*
334 ACACGAAA
1 ACCCG-AA
342 ACCGCGAA
1 ACC-CGAA
350 ACCCGAA
1 ACCCGAA
357 ACCCGATA
1 ACCCGA-A
365 ACCCGAA
1 ACCCGAA
372 A-CCGAA
1 ACCCGAA
378 ACCCGAA
1 ACCCGAA
385 ACCCGAA
1 ACCCGAA
*
392 ACACGAA
1 ACCCGAA
399 ACCCGAA
1 ACCCGAA
406 ACCCGAA
1 ACCCGAA
413 ACCCGAA
1 ACCCGAA
420 ACCCGAA
1 ACCCGAA
*
427 ACCCTAA
1 ACCCGAA
434 ACCCGAA
1 ACCCGAA
441 ACCCGAA
1 ACCCGAA
448 A-CCGAA
1 ACCCGAA
*
454 ACCCTGGA
1 ACCC-GAA
462 ACCCGAA
1 ACCCGAA
469 ATCCCGAA
1 A-CCCGAA
*
477 CCCTCG-A
1 ACC-CGAA
484 ACCCGAA
1 ACCCGAA
491 A-CCGAA
1 ACCCGAA
497 ACCCCGAA
1 A-CCCGAA
*
505 ACCAGAA
1 ACCCGAA
512 A-CCGAA
1 ACCCGAA
518 CACCCGAA
1 -ACCCGAA
*
526 ACCCGATC
1 ACCCGA-A
534 ACCCGAA
1 ACCCGAA
541 ACCCGAA
1 ACCCGAA
548 A-CCGAA
1 ACCCGAA
554 A-CCGAA
1 ACCCGAA
*
560 ACCCGCA
1 ACCCGAA
*
567 ACACGAA
1 ACCCGAA
574 A-CCGAA
1 ACCCGAA
580 ACCCG-A
1 ACCCGAA
*
586 CCCCGAA
1 ACCCGAA
593 ACCCGACA
1 ACCCGA-A
601 A-CCGAA
1 ACCCGAA
607 ACCCGAA
1 ACCCGAA
614 ACCCTGAA
1 ACCC-GAA
622 ACCCGAA
1 ACCCGAA
629 ACCCGAA
1 ACCCGAA
636 ACCCGAA
1 ACCCGAA
643 A-CCGAA
1 ACCCGAA
649 A-CCGAAA
1 ACCCG-AA
656 ACCCGAA
1 ACCCGAA
663 ACCCGAA
1 ACCCGAA
670 ACCCGAA
1 ACCCGAA
677 ACCCGAA
1 ACCCGAA
684 ACCCGAA
1 ACCCGAA
691 ACCACGAA
1 ACC-CGAA
699 A-CCGAA
1 ACCCGAA
705 ACCCCGATA
1 A-CCCGA-A
* *
714 AACAGAA
1 ACCCGAA
*
721 AACCGAAA
1 ACCCG-AA
729 ACTCCGAA
1 AC-CCGAA
737 ACCC--A
1 ACCCGAA
742 ACCCGAAA
1 ACCCG-AA
750 ACCCGAA
1 ACCCGAA
*
757 ACCCTAA
1 ACCCGAA
764 ACCCGAA
1 ACCCGAA
771 ACCCGAA
1 ACCCGAA
778 ACCCGAA
1 ACCCGAA
785 ACCCCG-A
1 A-CCCGAA
792 ACCC-AA
1 ACCCGAA
798 ACCCGAA
1 ACCCGAA
*
805 ACCTGAA
1 ACCCGAA
812 ACCCGAA
1 ACCCGAA
819 A-CCGAA
1 ACCCGAA
825 ACCCGAA
1 ACCCGAA
832 A-CCGAA
1 ACCCGAA
838 A-CCGAAA
1 ACCCG-AA
845 ACCCGAA
1 ACCCGAA
* *
852 TCCCGGA
1 ACCCGAA
859 A-CC-AA
1 ACCCGAA
864 ACCCGAA
1 ACCCGAA
871 ACCCGAA
1 ACCCGAA
*
878 AGCCGAA
1 ACCCGAA
885 ACCCGAA
1 ACCCGAA
892 ACCCGAA
1 ACCCGAA
*
899 ACCCTAA
1 ACCCGAA
*
906 ACCCTAA
1 ACCCGAA
913 ACCCGAA
1 ACCCGAA
920 ACCCGAAAA
1 ACCCG--AA
929 TACCCGAA
1 -ACCCGAA
**
937 ACCTTAAA
1 ACC-CGAA
945 ACCCGAA
1 ACCCGAA
952 ACCCGAA
1 ACCCGAA
959 ACCCG-A
1 ACCCGAA
965 ACCCGAAA
1 ACCCG-AA
973 ACCCGAA
1 ACCCGAA
980 ACCCGAA
1 ACCCGAA
987 ACCCGAA
1 ACCCGAA
*
994 AACCG-A
1 ACCCGAA
1000 A-CCGATAA
1 ACCCG--AA
*
1008 ACCCTAA
1 ACCCGAA
1015 ACCCGAA
1 ACCCGAA
1022 A-CCGAAA
1 ACCCG-AA
1029 ACCCTGAA
1 ACCC-GAA
1037 ACCCG-A
1 ACCCGAA
1043 ACCCG-A
1 ACCCGAA
1049 ACCCGAA
1 ACCCGAA
1056 ACCCGAA
1 ACCCGAA
1063 ACCCGAA
1 ACCCGAA
1070 ACCCGAA
1 ACCCGAA
1077 ACCCGAA
1 ACCCGAA
1084 ACCCGAA
1 ACCCGAA
1091 ACCCTGAAA
1 ACCC-G-AA
1100 ACCCG-A
1 ACCCGAA
1106 ACCCGAA
1 ACCCGAA
1113 A-CCGAA
1 ACCCGAA
1119 ACCCGAA
1 ACCCGAA
1126 A-CCGAAA
1 ACCCG-AA
1133 ACCCGAA
1 ACCCGAA
*
1140 ACCCTAA
1 ACCCGAA
1147 ACCCGAA
1 ACCCGAA
1154 A-CCGAA
1 ACCCGAA
1160 ACCCGAAA
1 ACCCG-AA
*
1168 ACCTG-A
1 ACCCGAA
1174 A-CCGAA
1 ACCCGAA
*
1180 A-CCTAA
1 ACCCGAA
1186 CACCCGAAA
1 -ACCCG-AA
1195 ACCCG-A
1 ACCCGAA
1201 A-CCGAA
1 ACCCGAA
1207 ACCCGAAA
1 ACCCG-AA
1215 TACCCCGAA
1 -A-CCCGAA
* *
1224 ACCCCACCC
1 ACCCGA--A
*
1233 CCCCGGAA
1 ACCC-GAA
1241 ACCCGAA
1 ACCCGAA
*
1248 ACACGAA
1 ACCCGAA
1255 ACCCG-A
1 ACCCGAA
*
1261 A-CCGAC
1 ACCCGAA
1267 A-CCGAA
1 ACCCGAA
1273 ACCCGAA
1 ACCCGAA
*
1280 A-CCGTA
1 ACCCGAA
1286 ACCCGAA
1 ACCCGAA
1293 ACCCGAA
1 ACCCGAA
*
1300 ACCTGAA
1 ACCCGAA
1307 ACCCGAA
1 ACCCGAA
1314 ACCCGAAA
1 ACCCG-AA
1322 ACCCGAA
1 ACCCGAA
1329 ACCCGAA
1 ACCCGAA
1336 A-CCGAA
1 ACCCGAA
1342 ACCCGAA
1 ACCCGAA
*
1349 ATCCCGAC
1 A-CCCGAA
1357 ACCCGAA
1 ACCCGAA
*
1364 ACCCGCA
1 ACCCGAA
1371 ACCCGAA
1 ACCCGAA
1378 A-CCGAA
1 ACCCGAA
1384 ACCCGAAA
1 ACCCG-AA
1392 TACCCGAA
1 -ACCCGAA
1400 ACCCGTAA
1 ACCCG-AA
1408 ACCCGATGAA
1 ACCC---GAA
1418 ACCCGAA
1 ACCCGAA
1425 ACCCGAA
1 ACCCGAA
1432 A--CGAA
1 ACCCGAA
* *
1437 A-CTGACT
1 ACCCGA-A
1444 ACCCGAA
1 ACCCGAA
1451 ACCCGAA
1 ACCCGAA
1458 ACCCGAA
1 ACCCGAA
1465 ACCCGAA
1 ACCCGAA
1472 ACCCGAA
1 ACCCGAA
1479 ACCCGAA
1 ACCCGAA
1486 A-CCGAA
1 ACCCGAA
1492 ACCCGAA
1 ACCCGAA
1499 ACCCGAA
1 ACCCGAA
1506 ACCCTGAA
1 ACCC-GAA
1514 ACCCGAA
1 ACCCGAA
1521 A-CCGAA
1 ACCCGAA
1527 ACCCGAAA
1 ACCCG-AA
1535 ACCCGAAA
1 ACCCG-AA
1543 ACCCGAA
1 ACCCGAA
*
1550 ACCCTAAA
1 ACCC-GAA
1558 ACCCGAA
1 ACCCGAA
1565 ACCCGAA
1 ACCCGAA
1572 ACCCGAA
1 ACCCGAA
1579 ACCCGAA
1 ACCCGAA
*
1586 CCCCG-A
1 ACCCGAA
*
1592 ACTCCTTAA
1 AC-CC-GAA
1601 ACCCGAA
1 ACCCGAA
1608 ACCCGAA
1 ACCCGAA
*
1615 ACCCGCA
1 ACCCGAA
1622 ACCCGAA
1 ACCCGAA
1629 A-CCG-A
1 ACCCGAA
1634 A-CCG-A
1 ACCCGAA
1639 ACCCGAA
1 ACCCGAA
1646 ACGCCGAA
1 AC-CCGAA
*
1654 CCCTCGAA
1 ACC-CGAA
1662 A-CCGAA
1 ACCCGAA
1668 ACCCGAA
1 ACCCGAA
1675 A-CCG-A
1 ACCCGAA
1680 ACCCGAA
1 ACCCGAA
1687 ACCTCGAA
1 ACC-CGAA
*
1695 ACCCTAA
1 ACCCGAA
*
1702 CCCCGAA
1 ACCCGAA
1709 ACCCTGAA
1 ACCC-GAA
* *
1717 CCCCCGCTA
1 -ACCCG-AA
*
1726 ACCCTAAA
1 ACCC-GAA
*
1734 ACCCGAC
1 ACCCGAA
1741 A-CCGAAA
1 ACCCG-AA
1748 ACCCGAAATA
1 ACCCG--A-A
*
1758 ACCCTAA
1 ACCCGAA
1765 ACCCGAAA
1 ACCCG-AA
*
1773 ACCCTAA
1 ACCCGAA
*
1780 ACCCTAA
1 ACCCGAA
1787 ACCCG-A
1 ACCCGAA
1793 ACCCGAA
1 ACCCGAA
1800 ACCCGAA
1 ACCCGAA
*
1807 A-CCTAA
1 ACCCGAA
*
1813 A-CCTAA
1 ACCCGAA
*
1819 ACCCTAA
1 ACCCGAA
1826 ACCCCGGAA
1 A-CCC-GAA
1835 ACCCGAAA
1 ACCCG-AA
1843 ACCCGCAA
1 ACCCG-AA
*
1851 ACCCTGGA
1 ACCC-GAA
**
1859 ACCCCCA
1 ACCCGAA
1866 ACTCCGAA
1 AC-CCGAA
*
1874 AACCGAA
1 ACCCGAA
1881 ACCCGAA
1 ACCCGAA
1888 ACCCGAA
1 ACCCGAA
1895 ACCCTGAA
1 ACCC-GAA
1903 A-CCGAA
1 ACCCGAA
1909 A-CCGAA
1 ACCCGAA
1915 ACCCGAAA
1 ACCCG-AA
1923 ACCCGATA
1 ACCCGA-A
1931 A-CCGAA
1 ACCCGAA
1937 ACCCGTAA
1 ACCCG-AA
1945 ACCCCGAAA
1 A-CCCG-AA
*
1954 ACCCGCA
1 ACCCGAA
1961 ACCCGAA
1 ACCCGAA
1968 ACCCGAA
1 ACCCGAA
1975 A-CCGATA
1 ACCCGA-A
1982 ACCCGGAAA
1 ACCC-G-AA
1991 CGACCCGAA
1 --ACCCGAA
2000 ACTCCGAA
1 AC-CCGAA
2008 A-CCGAA
1 ACCCGAA
2014 ACCCGAA
1 ACCCGAA
2021 ACGCCTGAA
1 AC-CC-GAA
2030 ACCCGAA
1 ACCCGAA
2037 A-CCGAA
1 ACCCGAA
2043 CACCTCGAA
1 -ACC-CGAA
2052 ATCCCGAA
1 A-CCCGAA
*
2060 ACCCGCA
1 ACCCGAA
2067 ACCCTGAAA
1 ACCC-G-AA
2076 ACTCCGAAA
1 AC-CCG-AA
2085 ACCCGAA
1 ACCCGAA
2092 ACCCGTAA
1 ACCCG-AA
2100 ACCCGAA
1 ACCCGAA
2107 ACCCGAA
1 ACCCGAA
2114 ACCCGATA
1 ACCCGA-A
*
2122 ACCTGAA
1 ACCCGAA
2129 ACTCCGAA
1 AC-CCGAA
2137 ACCCGAA
1 ACCCGAA
2144 ACCCGAA
1 ACCCGAA
2151 A-CCGAA
1 ACCCGAA
2157 ACCCG-A
1 ACCCGAA
2163 ACCCGAA
1 ACCCGAA
*
2170 ACCCGCA
1 ACCCGAA
2177 ACCCGAA
1 ACCCGAA
2184 ACCC-AA
1 ACCCGAA
2190 ACCCGAA
1 ACCCGAA
2197 ACCCGAA
1 ACCCGAA
2204 ACCCGAA
1 ACCCGAA
2211 ACCCGAA
1 ACCCGAA
2218 ACCCGGAA
1 ACCC-GAA
2226 ACCCGAA
1 ACCCGAA
*
2233 TCCCGCAA
1 ACCCG-AA
*
2241 CCCCGAAAA
1 ACCCG--AA
2250 ACCTCGAA
1 ACC-CGAA
*
2258 CCCCGAA
1 ACCCGAA
2265 ACCCGAA
1 ACCCGAA
2272 ACCCG-A
1 ACCCGAA
2278 ACCCGAA
1 ACCCGAA
2285 ACCCGAA
1 ACCCGAA
2292 ACCCGAA
1 ACCCGAA
2299 ACCCGAA
1 ACCCGAA
2306 ACCCGAA
1 ACCCGAA
2313 ACCCGAA
1 ACCCGAA
2320 ACCCGAA
1 ACCCGAA
*
2327 A-CCGTA
1 ACCCGAA
2333 ACCCGGCAA
1 ACCC-G-AA
*
2342 GCCCGAA
1 ACCCGAA
2349 ACCTCGAA
1 ACC-CGAA
*
2357 ACCCGAG
1 ACCCGAA
2364 ACCCG-A
1 ACCCGAA
2370 ACCC-AA
1 ACCCGAA
2376 ACCCGAA
1 ACCCGAA
2383 A-CCGAA
1 ACCCGAA
2389 ACCCCGGAATA
1 A-CCC-G-A-A
*
2400 ACCCAAA
1 ACCCGAA
2407 ACCCGAA
1 ACCCGAA
2414 A-CCGAA
1 ACCCGAA
2420 ACCACGAAA
1 ACC-CG-AA
2429 ACCCGAA
1 ACCCGAA
2436 ACCCGATA
1 ACCCGA-A
2444 ACCCGAA
1 ACCCGAA
2451 ACCC-AA
1 ACCCGAA
2457 A-CCGAA
1 ACCCGAA
2463 ACCCCGAA
1 A-CCCGAA
2471 ACCCCG-A
1 A-CCCGAA
2478 ACCCGATA
1 ACCCGA-A
2486 ACTCCGAA
1 AC-CCGAA
2494 CACCCGAA
1 -ACCCGAA
2502 TACCCGAA
1 -ACCCGAA
2510 ACTCCGAA
1 AC-CCGAA
2518 ACTCTCG-A
1 AC-C-CGAA
2526 ACCC-AA
1 ACCCGAA
2532 ACCTC--A
1 ACC-CGAA
2538 ACCCGAA
1 ACCCGAA
2545 ACCCGAA
1 ACCCGAA
2552 A-CCG-A
1 ACCCGAA
2557 ACCCGAA
1 ACCCGAA
*
2564 AGCCGAAA
1 ACCCG-AA
2572 ACCCG-A
1 ACCCGAA
2578 ACCCGAA
1 ACCCGAA
2585 ACCCGAA
1 ACCCGAA
2592 A-CCG-A
1 ACCCGAA
2597 ACCCGAA
1 ACCCGAA
2604 ACCCGAA
1 ACCCGAA
*
2611 ACCTGATA
1 ACCCGA-A
2619 A-CCG-A
1 ACCCGAA
*
2624 ACCCGCA
1 ACCCGAA
2631 ACCCG-A
1 ACCCGAA
2637 ACCCGAA
1 ACCCGAA
2644 ACCCG-A
1 ACCCGAA
2650 ACCCGAAAA
1 ACCCG--AA
*
2659 ATACCGAA
1 A-CCCGAA
2667 ACCCGAA
1 ACCCGAA
*
2674 ACCCGAC
1 ACCCGAA
2681 ACCTC-AA
1 ACC-CGAA
2688 A-CCGAA
1 ACCCGAA
2694 A-CCGAACA
1 ACCCG-A-A
*
2702 ACTCCTAA
1 AC-CCGAA
2710 A-CCGAA
1 ACCCGAA
2716 ACCCGAA
1 ACCCGAA
2723 ACCCGAA
1 ACCCGAA
2730 ATCCCGAA
1 A-CCCGAA
2738 A-CCG-A
1 ACCCGAA
2743 ACACCGAAAA
1 AC-CCG--AA
2753 ACCCGAA
1 ACCCGAA
2760 A-CCGAAA
1 ACCCG-AA
2767 ACCCGAA
1 ACCCGAA
2774 ACCCGAAA
1 ACCCG-AA
2782 ACCCCGAA
1 A-CCCGAA
2790 ACCTCG-A
1 ACC-CGAA
2797 ACCCGAA
1 ACCCGAA
*
2804 ACTCGCAA
1 ACCCG-AA
*
2812 TCCCGAA
1 ACCCGAA
2819 ACCCTG-A
1 ACCC-GAA
2826 ACCCGAA
1 ACCCGAA
2833 ACCCG-A
1 ACCCGAA
2839 A-CCGAA
1 ACCCGAA
2845 ACCCGAA
1 ACCCGAA
2852 ACCCGAA
1 ACCCGAA
2859 ACCCGAA
1 ACCCGAA
2866 ACCCGAA
1 ACCCGAA
*
2873 ACCCGAC
1 ACCCGAA
2880 ACCCGAA
1 ACCCGAA
2887 ACCCGAA
1 ACCCGAA
2894 ACCTC--A
1 ACC-CGAA
2900 ACCCGAAA
1 ACCCG-AA
*
2908 ACCCGAC
1 ACCCGAA
2915 ACCCGAAAA
1 ACCCG--AA
2924 ACCCG-A
1 ACCCGAA
2930 ACCCGAA
1 ACCCGAA
2937 ACCCG-A
1 ACCCGAA
2943 ACCCG-A
1 ACCCGAA
2949 ACCCGCAA
1 ACCCG-AA
*
2957 A-CCAAA
1 ACCCGAA
2963 ACCCGAAA
1 ACCCG-AA
2971 ACCCGAAA
1 ACCCG-AA
2979 ACCCTGAA
1 ACCC-GAA
*
2987 CCCCG-A
1 ACCCGAA
**
2993 ACAAGAA
1 ACCCGAA
*
3000 TACCCGCA
1 -ACCCGAA
3008 A-CCGAA
1 ACCCGAA
* *
3014 ACATC-ATT
1 AC-CCGA-A
**
3022 AGACGAA
1 ACCCGAA
*
3029 ACCCTAA
1 ACCCGAA
*
3036 ACCCGAC
1 ACCCGAA
3043 ACCCG-A
1 ACCCGAA
*
3049 ACCCTAA
1 ACCCGAA
3056 A-CCGAA
1 ACCCGAA
*
3062 ACACGAAA
1 ACCCG-AA
*
3070 ACCGGGAAA
1 ACC-CG-AA
3079 ACCCGAA
1 ACCCGAA
3086 ACCCGAA
1 ACCCGAA
3093 ACCCG-A
1 ACCCGAA
*
3099 ACCTG--
1 ACCCGAA
3104 ACCCGGTAA
1 ACCC-G-AA
*
3113 ACCCGCA
1 ACCCGAA
3120 ACCCGAA
1 ACCCGAA
3127 ACCC-AA
1 ACCCGAA
3133 ACCC-AA
1 ACCCGAA
3139 GACCCG-A
1 -ACCCGAA
3146 ACACCGAA
1 AC-CCGAA
3154 ACTCCGAA
1 AC-CCGAA
*
3162 ACCTGAA
1 ACCCGAA
3169 ACCCGAA
1 ACCCGAA
3176 A-CC-AA
1 ACCCGAA
3181 ACCCGAAA
1 ACCCG-AA
*
3189 ACCCTAA
1 ACCCGAA
*
3196 CCCCGAA
1 ACCCGAA
3203 ATCCCG-A
1 A-CCCGAA
3210 A-CCGAA
1 ACCCGAA
3216 ACCCGAA
1 ACCCGAA
3223 A-CCGAA
1 ACCCGAA
3229 ACCCGAA
1 ACCCGAA
3236 TACTCCG-A
1 -AC-CCGAA
3244 ACCCGAA
1 ACCCGAA
3251 ACCCGAA
1 ACCCGAA
*
3258 CCCCGAAAA
1 ACCCG--AA
3267 ACCCGAA
1 ACCCGAA
*
3274 ACCCTAA
1 ACCCGAA
3281 A-CCGAA
1 ACCCGAA
3287 A-CCGAA
1 ACCCGAA
3293 ACCCGAA
1 ACCCGAA
*
3300 ACCCTAAA
1 ACCC-GAA
3308 ACCCGAA
1 ACCCGAA
3315 ACCCGAA
1 ACCCGAA
3322 ACCCGTAA
1 ACCCG-AA
3330 ACCCGAA
1 ACCCGAA
3337 A-CCGTAAA
1 ACCCG--AA
3345 ACCCGAA
1 ACCCGAA
3352 ACCCGAA
1 ACCCGAA
*
3359 CCCCGTAA
1 ACCCG-AA
3367 A-CCGAA
1 ACCCGAA
3373 ACCCTGAA
1 ACCC-GAA
3381 ACGCCG-A
1 AC-CCGAA
3388 ACCCGAAA
1 ACCCG-AA
3396 ACCCCGAA
1 A-CCCGAA
3404 ACCCGAA
1 ACCCGAA
*
3411 ACCCGAC
1 ACCCGAA
3418 ACCCGGAA
1 ACCC-GAA
3426 ACCCGAA
1 ACCCGAA
3433 ACCCGAA
1 ACCCGAA
3440 ACCCTGAA
1 ACCC-GAA
3448 ACCCGATA
1 ACCCGA-A
3456 ACCTCGAA
1 ACC-CGAA
*
3464 A-CCG-C
1 ACCCGAA
3469 ACCCGAAA
1 ACCCG-AA
3477 ACCCGAA
1 ACCCGAA
3484 ACCCGAA
1 ACCCGAA
* *
3491 AACC-AC
1 ACCCGAA
*
3497 CCCCGAA
1 ACCCGAA
3504 ACCCG-A
1 ACCCGAA
3510 ACCTCGAA
1 ACC-CGAA
3518 ACCCGAA
1 ACCCGAA
*
3525 ATCCGAA
1 ACCCGAA
3532 ACCCG-A
1 ACCCGAA
3538 A-CCGTAA
1 ACCCG-AA
*
3545 ACCCGGAC
1 ACCC-GAA
3553 ACCCGAA
1 ACCCGAA
3560 ATCCCGAA
1 A-CCCGAA
3568 ACCCGAA
1 ACCCGAA
3575 ACCCG-A
1 ACCCGAA
3581 ACCCGAA
1 ACCCGAA
3588 ACCCGAA
1 ACCCGAA
3595 A-CCGAA
1 ACCCGAA
*
3601 ACCCGAC
1 ACCCGAA
3608 A-CCGAAA
1 ACCCG-AA
*
3615 ACCCTAAA
1 ACCC-GAA
3623 ACCCTGAA
1 ACCC-GAA
3631 ACCCG-A
1 ACCCGAA
3637 ACCCGAA
1 ACCCGAA
*
3644 ACCCGAC
1 ACCCGAA
3651 ACCCGAAA
1 ACCCG-AA
3659 ACCCGATA
1 ACCCGA-A
3667 A-CCGAA
1 ACCCGAA
3673 ACCCGAA
1 ACCCGAA
* *
3680 ACTCTAA
1 ACCCGAA
3687 A-CCGAA
1 ACCCGAA
* *
3693 AACGGAA
1 ACCCGAA
3700 ACCCGAA
1 ACCCGAA
3707 ACCCGAA
1 ACCCGAA
3714 ACCCGAA
1 ACCCGAA
*
3721 ACTC-AGA
1 ACCCGA-A
3728 ACCCGAA
1 ACCCGAA
3735 ACCCGAA
1 ACCCGAA
3742 ACCCGAA
1 ACCCGAA
3749 ACCCGTAA
1 ACCCG-AA
3757 ACCCGAA
1 ACCCGAA
3764 ACTCCGGAA
1 AC-CC-GAA
3773 ACCCCGAA
1 A-CCCGAA
3781 ACCCGAA
1 ACCCGAA
3788 TACCCGAA
1 -ACCCGAA
3796 ACCCGAA
1 ACCCGAA
3803 A-CCGAA
1 ACCCGAA
3809 ACCCGAA
1 ACCCGAA
3816 ACTCCGAA
1 AC-CCGAA
3824 ACCCGAA
1 ACCCGAA
3831 ACCTCCG-A
1 A-C-CCGAA
3839 ACCCGAA
1 ACCCGAA
3846 ACCCGAA
1 ACCCGAA
3853 A-CCGCAA
1 ACCCG-AA
3860 A-CCGAAAA
1 ACCCG--AA
*
3868 AACCGTAA
1 ACCCG-AA
3876 TACTCCGAA
1 -AC-CCGAA
3885 ACCCGAA
1 ACCCGAA
*
3892 ACCGTGAA
1 ACC-CGAA
3900 ACCCGAA
1 ACCCGAA
3907 ACCCGAA
1 ACCCGAA
3914 ACCC-AA
1 ACCCGAA
* *
3920 ACCAGAC
1 ACCCGAA
3927 ACCCG-A
1 ACCCGAA
3933 ACCCGCAA
1 ACCCG-AA
3941 ACCCGAA
1 ACCCGAA
3948 ACCCGAA
1 ACCCGAA
*
3955 ACCCGCA
1 ACCCGAA
3962 ACCCGAA
1 ACCCGAA
*
3969 ACCC--C
1 ACCCGAA
*
3974 CCCCAGAA
1 ACCC-GAA
3982 ACCCG-A
1 ACCCGAA
3988 ACCCGAA
1 ACCCGAA
3995 ACCCG-A
1 ACCCGAA
4001 ACCCGAA
1 ACCCGAA
4008 ACCCGAAA
1 ACCCG-AA
4016 ATCCCGAA
1 A-CCCGAA
4024 ACCCGAA
1 ACCCGAA
4031 ATCCCGAA
1 A-CCCGAA
4039 A-CCGAA
1 ACCCGAA
4045 ACCCGACTA
1 ACCCGA--A
*
4054 TCCCGAA
1 ACCCGAA
4061 ACCCGAA
1 ACCCGAA
*
4068 CCCCGAAA
1 ACCCG-AA
4076 ACCCGAA
1 ACCCGAA
4083 ACCCTG-A
1 ACCC-GAA
4090 ACCCGTAA
1 ACCCG-AA
4098 ACCCGAA
1 ACCCGAA
4105 ACCCGAA
1 ACCCGAA
4112 ACCCGAAA
1 ACCCG-AA
4120 ACCCGAA
1 ACCCGAA
4127 ACCCGAA
1 ACCCGAA
4134 ACCCGAA
1 ACCCGAA
4141 ACCCGAA
1 ACCCGAA
4148 ACCCGAA
1 ACCCGAA
4155 ACCCGAA
1 ACCCGAA
4162 TACCCG-A
1 -ACCCGAA
* *
4169 A-CCTAT
1 ACCCGAA
*
4175 ACCTGAA
1 ACCCGAA
4182 ACCCGCAA
1 ACCCG-AA
* *
4190 TCCCTAA
1 ACCCGAA
4197 A-CCGAA
1 ACCCGAA
4203 ACCCGGAA
1 ACCC-GAA
4211 TACCCGAA
1 -ACCCGAA
*
4219 ATCCGAAAA
1 ACCCG--AA
4228 ACCCGAA
1 ACCCGAA
4235 ACCCGAA
1 ACCCGAA
4242 A-CCGAA
1 ACCCGAA
4248 ACCCGAA
1 ACCCGAA
4255 ACCCGAA
1 ACCCGAA
4262 ACCCGAA
1 ACCCGAA
4269 ACCCGAAA
1 ACCCG-AA
4277 ACCCG-A
1 ACCCGAA
*
4283 ACCCG-C
1 ACCCGAA
*
4289 ACCCGGGA
1 ACCC-GAA
*
4297 ACCCGCA
1 ACCCGAA
4304 ACCCGAA
1 ACCCGAA
4311 ACCCGAA
1 ACCCGAA
4318 ACCCG-A
1 ACCCGAA
4324 A-CCGAA
1 ACCCGAA
4330 ACCCGAA
1 ACCCGAA
4337 ACCCGAAA
1 ACCCG-AA
4345 ACCCGAATA
1 ACCCG-A-A
4354 ACCCGAA
1 ACCCGAA
4361 ACCCGCAA
1 ACCCG-AA
4369 ACCACGAA
1 ACC-CGAA
4377 ACCCGAA
1 ACCCGAA
4384 ACCCGAAA
1 ACCCG-AA
4392 ACCCGAA
1 ACCCGAA
4399 ACCCGAA
1 ACCCGAA
4406 A-CCGAA
1 ACCCGAA
4412 ACCCGAA
1 ACCCGAA
4419 ACCCGAA
1 ACCCGAA
4426 ACCCGAA
1 ACCCGAA
**
4433 ACCC-CC
1 ACCCGAA
* *
4439 CCCCTAA
1 ACCCGAA
4446 A-CCGAA
1 ACCCGAA
4452 ACCCGATA
1 ACCCGA-A
4460 TACCCGAA
1 -ACCCGAA
4468 ACCCG-A
1 ACCCGAA
*
4474 ACCCGGA
1 ACCCGAA
4481 A-CCGAA
1 ACCCGAA
4487 TA-CCGAA
1 -ACCCGAA
4494 ACCCGAA
1 ACCCGAA
4501 ACCCGAAAA
1 ACCCG--AA
4510 ACCCGAA
1 ACCCGAA
4517 ACCCCGAA
1 A-CCCGAA
*
4525 ACCGGAAA
1 ACCCG-AA
4533 ACCCTGAA
1 ACCC-GAA
4541 ACCCGAA
1 ACCCGAA
4548 ACCCGAA
1 ACCCGAA
4555 ATCCCG-A
1 A-CCCGAA
4562 A-CCGAAA
1 ACCCG-AA
4569 ACCCGAA
1 ACCCGAA
*
4576 CTCCCTG-A
1 -ACCC-GAA
* *
4584 ACCTGCAG
1 ACCCG-AA
4592 ACCCGAAA
1 ACCCG-AA
4600 ACCCGAA
1 ACCCGAA
4607 GACCCTGAA
1 -ACCC-GAA
4616 ACCCGAA
1 ACCCGAA
4623 ACCCGAA
1 ACCCGAA
4630 ACCCCGAA
1 A-CCCGAA
4638 ACCCGAA
1 ACCCGAA
4645 ACCC-AA
1 ACCCGAA
*
4651 ACCTTG-A
1 ACC-CGAA
4658 ACCCGAA
1 ACCCGAA
*
4665 CCCCGAAA
1 ACCCG-AA
4673 ACCCGAA
1 ACCCGAA
4680 ACCCGAA
1 ACCCGAA
4687 ACCCGATA
1 ACCCGA-A
*
4695 ACCCCAA
1 ACCCGAA
4702 ACCACGAA
1 ACC-CGAA
4710 ACCCGATA
1 ACCCGA-A
4718 ACCCGAA
1 ACCCGAA
*
4725 CTCCCGAA
1 -ACCCGAA
4733 ACCCGAA
1 ACCCGAA
*
4740 AACCGAA
1 ACCCGAA
4747 A-CCGAA
1 ACCCGAA
4753 ACCCGAA
1 ACCCGAA
4760 ACCCGAATAA
1 ACCCG---AA
4770 ACCCGGAA
1 ACCC-GAA
4778 TAGCCCTGAA
1 -A-CCC-GAA
4788 ACCCGAA
1 ACCCGAA
4795 ACCCGAA
1 ACCCGAA
4802 ACCCGTAA
1 ACCCG-AA
4810 ACCCGAAA
1 ACCCG-AA
*
4818 AGCCGAAA
1 ACCCG-AA
*
4826 ACCCAAA
1 ACCCGAA
4833 ATCCCGAA
1 A-CCCGAA
*
4841 ACCCTAA
1 ACCCGAA
4848 ACCCGAA
1 ACCCGAA
*
4855 ACCCTAA
1 ACCCGAA
4862 ACCCGAA
1 ACCCGAA
4869 ACCCGAA
1 ACCCGAA
*
4876 ACTCCAAA
1 AC-CCGAA
4884 ACCCGAA
1 ACCCGAA
4891 ACCCTGAA
1 ACCC-GAA
4899 A-CCGAA
1 ACCCGAA
*
4905 A-CCGAC
1 ACCCGAA
*
4911 ACACGAA
1 ACCCGAA
4918 A--CGAA
1 ACCCGAA
4923 ACCCCGAA
1 A-CCCGAA
4931 ACCCGAAA
1 ACCCG-AA
4939 ACCCGAAA
1 ACCCG-AA
4947 ACCCGAATA
1 ACCCG-A-A
4956 ATCCCGAA
1 A-CCCGAA
*
4964 ACCAGAA
1 ACCCGAA
4971 ACCCGAA
1 ACCCGAA
4978 TACCCGAAA
1 -ACCCG-AA
*
4987 ACTCGAA
1 ACCCGAA
4994 ACCCGAA
1 ACCCGAA
5001 ACTCCGAAA
1 AC-CCG-AA
5010 ACCCGAA
1 ACCCGAA
*
5017 ACCTGAA
1 ACCCGAA
5024 A-CCGCAA
1 ACCCG-AA
5031 ACCCGTAA
1 ACCCG-AA
5039 ACCCG-A
1 ACCCGAA
5045 ACCCGAA
1 ACCCGAA
5052 ACCCGAA
1 ACCCGAA
5059 ACCCGAA
1 ACCCGAA
5066 TACCCCGAA
1 -A-CCCGAA
5075 ACCCG-A
1 ACCCGAA
5081 ACCCTGAA
1 ACCC-GAA
5089 ACCCGAA
1 ACCCGAA
5096 A-CCGAA
1 ACCCGAA
*
5102 ACCCAAA
1 ACCCGAA
*
5109 ACCCGAC
1 ACCCGAA
*
5116 ACCCTAAAA
1 ACCC--GAA
5125 ACCCGAAA
1 ACCCG-AA
*
5133 ACCCGGCA
1 ACCC-GAA
**
5141 ACCCTGCC
1 ACCC-GAA
5149 ACCCGAA
1 ACCCGAA
5156 A-CCGAA
1 ACCCGAA
5162 ACCCG-A
1 ACCCGAA
5168 ACCGCGTAA
1 ACC-CG-AA
5177 A-CCGAA
1 ACCCGAA
5183 ACCCGAA
1 ACCCGAA
*
5190 CCCCG-A
1 ACCCGAA
5196 A-CCGTATA
1 ACCCG-A-A
5204 ACCCG-A
1 ACCCGAA
5210 A-CCGAA
1 ACCCGAA
5216 ACCCGAA
1 ACCCGAA
5223 ACCCGCAA
1 ACCCG-AA
5231 ACCCGAA
1 ACCCGAA
5238 ACCCGAA
1 ACCCGAA
5245 A-CCGAA
1 ACCCGAA
5251 ACCCGGAA
1 ACCC-GAA
*
5259 A-CCGCA
1 ACCCGAA
**
5265 ACCCGCC
1 ACCCGAA
*
5272 ACCCG-C
1 ACCCGAA
5278 ACCCGATA
1 ACCCGA-A
*
5286 CCCCGAAA
1 ACCCG-AA
5294 ACCCGAA
1 ACCCGAA
5301 ACCCGTAA
1 ACCCG-AA
*
5309 CCCCGAA
1 ACCCGAA
*
5316 CCCCGAA
1 ACCCGAA
5323 TACCCG-A
1 -ACCCGAA
*
5330 AGCCGAA
1 ACCCGAA
5337 TACCCGAA
1 -ACCCGAA
5345 ACCCTGAA
1 ACCC-GAA
5353 ACCCGAA
1 ACCCGAA
*
5360 ACCGGAA
1 ACCCGAA
5367 A-CCGAA
1 ACCCGAA
5373 ACCCGAATA
1 ACCCG-A-A
*
5382 ACCCTAAA
1 ACCC-GAA
5390 ACCCGAA
1 ACCCGAA
*
5397 ACCCTAA
1 ACCCGAA
5404 ACCCGAAA
1 ACCCG-AA
5412 ACCCGAA
1 ACCCGAA
5419 ACCCGAA
1 ACCCGAA
5426 TACCCGAAAA
1 -ACCCG--AA
*
5436 ACCCGCA
1 ACCCGAA
5443 ACCCGAA
1 ACCCGAA
*
5450 ACCCGCA
1 ACCCGAA
5457 ACCCGAAA
1 ACCCG-AA
5465 ACCCGAAA
1 ACCCG-AA
5473 ACCCGAA
1 ACCCGAA
5480 ACCCGAA
1 ACCCGAA
5487 ACCCG-A
1 ACCCGAA
*
5493 ACCCGAC
1 ACCCGAA
*
5500 CCCCG-A
1 ACCCGAA
5506 ACCCGAA
1 ACCCGAA
5513 ACCCCGTAA
1 A-CCCG-AA
*
5522 ACTCG-A
1 ACCCGAA
5528 ACCCGAA
1 ACCCGAA
5535 ACCCGAA
1 ACCCGAA
5542 A-CCG-A
1 ACCCGAA
5547 ACCCGGAA
1 ACCC-GAA
5555 ACCC-AA
1 ACCCGAA
5561 ACCCGAA
1 ACCCGAA
5568 ATCCCGAA
1 A-CCCGAA
5576 ACCCGAA
1 ACCCGAA
5583 ACCCGAA
1 ACCCGAA
5590 A-CCGAA
1 ACCCGAA
5596 ACCCGAA
1 ACCCGAA
5603 ACCCGAA
1 ACCCGAA
5610 ACCCGAA
1 ACCCGAA
5617 A-CCGAA
1 ACCCGAA
5623 ACCCGAA
1 ACCCGAA
5630 A-CCGATA
1 ACCCGA-A
*
5637 ACCCGTA
1 ACCCGAA
5644 ACCCGAA
1 ACCCGAA
*
5651 ACCCGCA
1 ACCCGAA
5658 ACCCGAA
1 ACCCGAA
5665 ACCCGAA
1 ACCCGAA
5672 ACCCGAA
1 ACCCGAA
5679 ACCCGAA
1 ACCCGAA
5686 ACCCGAA
1 ACCCGAA
5693 ACCCCGAA
1 A-CCCGAA
5701 A-CCGAA
1 ACCCGAA
*
5707 ACCCGCA
1 ACCCGAA
5714 ACCCGAA
1 ACCCGAA
5721 ACCCTGAA
1 ACCC-GAA
*
5729 A-CCGATC
1 ACCCGA-A
5736 ACCCGAA
1 ACCCGAA
5743 ACCCG-A
1 ACCCGAA
5749 A-CCGAAA
1 ACCCG-AA
5756 ACCCGAA
1 ACCCGAA
5763 ACCCGAAA
1 ACCCG-AA
*
5771 AACCGAATA
1 ACCCG-A-A
5780 ACCCGAA
1 ACCCGAA
5787 ACCCGAA
1 ACCCGAA
5794 ACCCCGATA
1 A-CCCGA-A
5803 A-CCGATA
1 ACCCGA-A
*
5810 TACCCGCA
1 -ACCCGAA
5818 ACCCGAAA
1 ACCCG-AA
*
5826 ACCCCGAC
1 A-CCCGAA
5834 ACCCGAA
1 ACCCGAA
5841 ACCCGTAA
1 ACCCG-AA
5849 ACCCGAAA
1 ACCCG-AA
5857 TACCCGAA
1 -ACCCGAA
*
5865 ACCTGAATA
1 ACCCG-A-A
*
5874 AGCCCTAA
1 A-CCCGAA
5882 ACCCG-A
1 ACCCGAA
5888 ACCGCGAA
1 ACC-CGAA
5896 ACCGCGAA
1 ACC-CGAA
5904 ACTCCG-A
1 AC-CCGAA
5911 ACCCGAAA
1 ACCCG-AA
* *
5919 ATCAGAACA
1 ACCCG-A-A
5928 ACTCCG-A
1 AC-CCGAA
*
5935 ACCCGAC
1 ACCCGAA
*
5942 CCCCGAA
1 ACCCGAA
5949 ACTCCGATA
1 AC-CCGA-A
5958 ACCCGAA
1 ACCCGAA
5965 ACCCGAA
1 ACCCGAA
*
5972 ACCCGAC
1 ACCCGAA
*
5979 CCCCGAA
1 ACCCGAA
5986 ACCCGAA
1 ACCCGAA
5993 ACCCCGAA
1 A-CCCGAA
6001 ACCCCGAA
1 A-CCCGAA
6009 ACCCTCGAA
1 A-CC-CGAA
6018 A-CCGAA
1 ACCCGAA
6024 ACCCGAA
1 ACCCGAA
*
6031 A-CCGAT
1 ACCCGAA
6037 ACCCGAA
1 ACCCGAA
6044 ACCCGAA
1 ACCCGAA
6051 A-CCGAA
1 ACCCGAA
*
6057 TAACCGAA
1 -ACCCGAA
6065 ACCCGAAA
1 ACCCG-AA
6073 ACCCG-A
1 ACCCGAA
6079 ACCCGAAA
1 ACCCG-AA
*
6087 GACCCTAAAA
1 -ACCC--GAA
6097 ACCCGAA
1 ACCCGAA
6104 ACCCGAA
1 ACCCGAA
6111 ACCCG-A
1 ACCCGAA
6117 ACCCGAA
1 ACCCGAA
*
6124 ACCCTAA
1 ACCCGAA
*
6131 ACTCC-AC
1 AC-CCGAA
6138 ACCCGAA
1 ACCCGAA
*
6145 GATCCGAA
1 -ACCCGAA
*
6153 ACCAGGAA
1 ACC-CGAA
6161 ACCCGAA
1 ACCCGAA
6168 ACCCGAA
1 ACCCGAA
*
6175 A-CCGAC
1 ACCCGAA
*
6181 ACCCTAA
1 ACCCGAA
*
6188 TCCCGAA
1 ACCCGAA
6195 ACCCGAA
1 ACCCGAA
6202 ACCTCGGAA
1 ACC-C-GAA
6211 ACCCGAA
1 ACCCGAA
6218 ACCCCGAA
1 A-CCCGAA
6226 ACCC-AA
1 ACCCGAA
*
6232 ACCCCAAA
1 A-CCCGAA
*
6240 ACCCAAAA
1 ACCC-GAA
*
6248 ACCCAAA
1 ACCCGAA
6255 ACGCC-AA
1 AC-CCGAA
6262 CACCCGAA
1 -ACCCGAA
6270 ACCCG-A
1 ACCCGAA
6276 A-CCGAA
1 ACCCGAA
*
6282 AACCGAA
1 ACCCGAA
*
6289 ACCCTAA
1 ACCCGAA
6296 ACCCGAA
1 ACCCGAA
6303 ACCCG-A
1 ACCCGAA
6309 ACCCGAA
1 ACCCGAA
6316 ACCCGAA
1 ACCCGAA
* *
6323 ACTCGCA
1 ACCCGAA
*
6330 ACCCGCA
1 ACCCGAA
6337 ACCCGAA
1 ACCCGAA
*
6344 ATCCGAA
1 ACCCGAA
6351 ACCCTGAA
1 ACCC-GAA
6359 ACCCG--
1 ACCCGAA
6364 ACCCGAA
1 ACCCGAA
6371 A-CCGAA
1 ACCCGAA
6377 A-CCGAA
1 ACCCGAA
*
6383 ACCCGCA
1 ACCCGAA
6390 ACCCGAA
1 ACCCGAA
6397 A-CCGAA
1 ACCCGAA
*
6403 ACCCGAC
1 ACCCGAA
*
6410 ACCCGAC
1 ACCCGAA
6417 ACCCGAA
1 ACCCGAA
*
6424 ACCCCAA
1 ACCCGAA
6431 ACCCGAA
1 ACCCGAA
6438 GACCCGAA
1 -ACCCGAA
6446 ACCCGAA
1 ACCCGAA
6453 A-CCGATA
1 ACCCGA-A
6460 ACCCGAA
1 ACCCGAA
6467 ACCCGGAA
1 ACCC-GAA
6475 ACCCGAA
1 ACCCGAA
6482 ACCCGAA
1 ACCCGAA
*
6489 CCCCCGAA
1 -ACCCGAA
*
6497 CTCCCGTAA
1 -ACCCG-AA
6506 ACCCGAAA
1 ACCCG-AA
*
6514 AACCGAA
1 ACCCGAA
*
6521 CCCCCGAA
1 -ACCCGAA
*
6529 CATCCGAAA
1 -ACCCG-AA
6538 ACCCG-A
1 ACCCGAA
*
6544 ACCAGAA
1 ACCCGAA
6551 A-CCGAA
1 ACCCGAA
6557 ACTCCG-A
1 AC-CCGAA
6564 ACCCGACA
1 ACCCGA-A
*
6572 TCCCGAAA
1 ACCCG-AA
6580 ACTCCGAA
1 AC-CCGAA
*
6588 ACTCCCAA
1 AC-CCGAA
*
6596 ACCCCAA
1 ACCCGAA
*
6603 ACCCCAA
1 ACCCGAA
*
6610 ACCCCAA
1 ACCCGAA
*
6617 CCCCCGAA
1 -ACCCGAA
*
6625 ACCCCAA
1 ACCCGAA
*
6632 ACCC-CA
1 ACCCGAA
*
6638 ACCCCAA
1 ACCCGAA
*
6645 ACCC-CA
1 ACCCGAA
*
6651 ACCCCAA
1 ACCCGAA
*
6658 ACCCCAA
1 ACCCGAA
*
6665 ACCTCCAAA
1 A-C-CCGAA
6674 ACCC-AA
1 ACCCGAA
*
6680 ACCCTCAA
1 ACCC-GAA
6688 ACCC-AA
1 ACCCGAA
* *
6694 CCCCCAAA
1 -ACCCGAA
*
6702 ACCCCAAAA
1 A-CCC-GAA
*
6711 AGCCC-CA
1 A-CCCGAA
*
6718 ACCTCCAA
1 ACC-CGAA
*
6726 ACTCCCAA
1 AC-CCGAA
*
6734 GACAC-AA
1 -ACCCGAA
*
6741 ACCTCCTCAA
1 A-C-CC-GAA
*
6751 ACCCCAA
1 ACCCGAA
*
6758 CACCCCCAA
1 -A-CCCGAA
*
6767 ACCCCAA
1 ACCCGAA
6774 A-CCGAA
1 ACCCGAA
6780 ACCCGAAA
1 ACCCG-AA
6788 ATCCCGAA
1 A-CCCGAA
*
6796 ACCCTAAA
1 ACCC-GAA
6804 ACCCGAAAA
1 ACCCG--AA
6813 ACCCGAA
1 ACCCGAA
6820 ACCCGAAA
1 ACCCG-AA
*
6828 ACCCCGAC
1 A-CCCGAA
*
6836 ACCGGAA
1 ACCCGAA
6843 ACCCGAA
1 ACCCGAA
6850 ACCCGAA
1 ACCCGAA
*
6857 ACCAGAA
1 ACCCGAA
6864 ACCCGTAA
1 ACCCG-AA
6872 A-CCGAA
1 ACCCGAA
6878 ACCCGAA
1 ACCCGAA
*
6885 AACCGAA
1 ACCCGAA
* *
6892 ACCAG-C
1 ACCCGAA
6898 ACCCGAA
1 ACCCGAA
6905 A-CCGAA
1 ACCCGAA
6911 ACCCGAA
1 ACCCGAA
6918 ACCCGAA
1 ACCCGAA
6925 TACCCGAA
1 -ACCCGAA
6933 ACCCGAA
1 ACCCGAA
6940 A-CCGAA
1 ACCCGAA
*
6946 ACCCTAA
1 ACCCGAA
6953 A-CCGAA
1 ACCCGAA
6959 ACCCGAA
1 ACCCGAA
6966 ACCCGAA
1 ACCCGAA
6973 ACTCCGAA
1 AC-CCGAA
6981 A-CCGAA
1 ACCCGAA
6987 ACCCGAA
1 ACCCGAA
6994 ACTCCGTAA
1 AC-CCG-AA
7003 ACCCGAA
1 ACCCGAA
*
7010 ACCTGAA
1 ACCCGAA
7017 TACCCGAA
1 -ACCCGAA
* *
7025 AACCGCA
1 ACCCGAA
7032 ACCCGATA
1 ACCCGA-A
7040 ACCTCGAA
1 ACC-CGAA
*
7048 ACCCCGAC
1 A-CCCGAA
*
7056 ACCCTAA
1 ACCCGAA
7063 ACCCGAA
1 ACCCGAA
7070 A-CCGAAA
1 ACCCG-AA
7077 ACCCGAA
1 ACCCGAA
7084 ACCCGAA
1 ACCCGAA
7091 ACCCGAA
1 ACCCGAA
*
7098 ACCCTAA
1 ACCCGAA
7105 ACCCGAA
1 ACCCGAA
7112 ACCCGAA
1 ACCCGAA
7119 ACCCGAA
1 ACCCGAA
7126 ACCCCGTAA
1 A-CCCG-AA
7135 A-CCG-A
1 ACCCGAA
7140 ACCCGAAA
1 ACCCG-AA
7148 ACCCGAA
1 ACCCGAA
7155 ACCCGAA
1 ACCCGAA
7162 TACCCGGAA
1 -ACCC-GAA
7171 ACCTCGAA
1 ACC-CGAA
7179 A-CCGAAA
1 ACCCG-AA
*
7186 ACCCGGA
1 ACCCGAA
7193 ACCCGAA
1 ACCCGAA
7200 ACCCGAA
1 ACCCGAA
*
7207 CCCCGAA
1 ACCCGAA
7214 ACCCG-A
1 ACCCGAA
7220 A-CCGAAA
1 ACCCG-AA
7227 ACCCCGAA
1 A-CCCGAA
7235 A-CCGAA
1 ACCCGAA
7241 ACCCGAA
1 ACCCGAA
7248 ACCCCGAA
1 A-CCCGAA
7256 ATCCCCGAA
1 A--CCCGAA
7265 ACCCGAA
1 ACCCGAA
7272 ACCCGAA
1 ACCCGAA
7279 A-CCGTAA
1 ACCCG-AA
7286 ACCCGCAA
1 ACCCG-AA
7294 ACCCGAA
1 ACCCGAA
7301 ACCCGAA
1 ACCCGAA
7308 ACCCGAAA
1 ACCCG-AA
*
7316 ACCAGAA
1 ACCCGAA
7323 ACCCGAA
1 ACCCGAA
7330 ACCCGAA
1 ACCCGAA
7337 ACCCGAA
1 ACCCGAA
7344 ACCCGACA
1 ACCCGA-A
7352 ACCCGAA
1 ACCCGAA
*
7359 CCCCGAA
1 ACCCGAA
7366 ACCCGAA
1 ACCCGAA
7373 ACCGCGAA
1 ACC-CGAA
7381 ACCCGAA
1 ACCCGAA
7388 ACCCGAAA
1 ACCCG-AA
*
7396 ACCAGAA
1 ACCCGAA
7403 ACCCGAA
1 ACCCGAA
7410 ACCCGGAA
1 ACCC-GAA
7418 ACCCG-A
1 ACCCGAA
7424 ACCCGAA
1 ACCCGAA
*
7431 CCCCGAA
1 ACCCGAA
7438 ACCCGAAA
1 ACCCG-AA
7446 TACCCGAA
1 -ACCCGAA
7454 ACCCGAA
1 ACCCGAA
7461 ACCCGAA
1 ACCCGAA
7468 A-CCGAA
1 ACCCGAA
*
7474 CCTCCCCGAA
1 ---ACCCGAA
7484 ACCCGAA
1 ACCCGAA
7491 A-CCGAA
1 ACCCGAA
7497 ATCCCGAA
1 A-CCCGAA
7505 ACCCGAA
1 ACCCGAA
*
7512 ACCCGTAC
1 ACCCG-AA
7520 ACCCGGATA
1 ACCC-GA-A
7529 ACTCCGAA
1 AC-CCGAA
7537 ACCTCGAA
1 ACC-CGAA
7545 A-CCGAA
1 ACCCGAA
7551 ACCCGAA
1 ACCCGAA
*
7558 ACCGGAA
1 ACCCGAA
*
7565 CCGCCGAA
1 AC-CCGAA
7573 A-CCGAA
1 ACCCGAA
*
7579 ACCCGCA
1 ACCCGAA
*
7586 ACCCG-C
1 ACCCGAA
7592 ACCCGAA
1 ACCCGAA
7599 ACCCG-A
1 ACCCGAA
7605 A-CCGAA
1 ACCCGAA
*
7611 ACCCGCA
1 ACCCGAA
7618 ACCCGAA
1 ACCCGAA
*
7625 ACCCGAC
1 ACCCGAA
7632 ACCCGCAA
1 ACCCG-AA
7640 A-CCGAA
1 ACCCGAA
*
7646 CCCCGAA
1 ACCCGAA
7653 ACCC-AA
1 ACCCGAA
7659 ACCCGAA
1 ACCCGAA
7666 ACCCGAA
1 ACCCGAA
*
7673 A-ACG-A
1 ACCCGAA
*
7678 ACCCGTA
1 ACCCGAA
7685 ACCCGAA
1 ACCCGAA
7692 ACCCGAA
1 ACCCGAA
*
7699 TACCCGCA
1 -ACCCGAA
*
7707 CCCCGAAA
1 ACCCG-AA
7715 ATCCCGAA
1 A-CCCGAA
7723 ACCCGAA
1 ACCCGAA
7730 ACCCGAA
1 ACCCGAA
7737 ACCCGAA
1 ACCCGAA
*
7744 A-CCGAC
1 ACCCGAA
*
7750 ACCGCAAA
1 ACC-CGAA
7758 ACCCGAAA
1 ACCCG-AA
*
7766 ACCAGAA
1 ACCCGAA
*
7773 AACCGAA
1 ACCCGAA
7780 ACCCGGAA
1 ACCC-GAA
7788 ACCCG-A
1 ACCCGAA
*
7794 ACCCTAA
1 ACCCGAA
7801 ACCCGAA
1 ACCCGAA
*
7808 CACCAGAA
1 -ACCCGAA
*
7816 ACCTGAA
1 ACCCGAA
7823 ACCCGAAA
1 ACCCG-AA
7831 ACCCGAA
1 ACCCGAA
7838 ACCCGAA
1 ACCCGAA
7845 A-CCGAA
1 ACCCGAA
*
7851 ATACCG-A
1 A-CCCGAA
7858 ACCCGAA
1 ACCCGAA
7865 ACCCGAA
1 ACCCGAA
7872 ACCCGAA
1 ACCCGAA
7879 ACCCGACA
1 ACCCGA-A
7887 A-CCGACA
1 ACCCGA-A
7894 ACCCGAA
1 ACCCGAA
7901 ACCCG-A
1 ACCCGAA
*
7907 ACCCGCA
1 ACCCGAA
7914 A-CCGAAA
1 ACCCG-AA
7921 ACCCGGAA
1 ACCC-GAA
*
7929 CCCCG-A
1 ACCCGAA
7935 ACCCGAA
1 ACCCGAA
*
7942 CCCCGAA
1 ACCCGAA
*
7949 ACCCGCA
1 ACCCGAA
7956 ACCCGAAA
1 ACCCG-AA
7964 ACCCCGAA
1 A-CCCGAA
*
7972 ACCCTAA
1 ACCCGAA
*
7979 ACCCTAA
1 ACCCGAA
7986 A-CCGCATA
1 ACCCG-A-A
7994 ACCTCGAAA
1 ACC-CG-AA
8003 ACCGCCGAAA
1 A-C-CCG-AA
8013 ACCCGAA
1 ACCCGAA
8020 ACCCGAATA
1 ACCCG-A-A
*
8029 ACCCGCA
1 ACCCGAA
8036 ACTCCG-A
1 AC-CCGAA
8043 A-CCGAA
1 ACCCGAA
8049 ACCCGAA
1 ACCCGAA
8056 ACCCGAA
1 ACCCGAA
8063 ACCCCGAA
1 A-CCCGAA
8071 ACCCGAA
1 ACCCGAA
*
8078 ATCCCTAA
1 A-CCCGAA
8086 ACCCG-A
1 ACCCGAA
*
8092 CCCCTG-A
1 ACCC-GAA
8099 ACCTCGAA
1 ACC-CGAA
**
8107 ACCCGCC
1 ACCCGAA
*
8114 CCCCGAAA
1 ACCCG-AA
8122 ACCC-AGA
1 ACCCGA-A
8129 ACCCGAA
1 ACCCGAA
8136 ACCCGAA
1 ACCCGAA
8143 ACCCGAA
1 ACCCGAA
8150 ACCCAGAA
1 ACCC-GAA
8158 ACCCGAA
1 ACCCGAA
8165 A-CCGAAA
1 ACCCG-AA
8172 ACCCGAA
1 ACCCGAA
*
8179 A-CC-ACC
1 ACCCGA-A
*
8185 ACCAGGAA
1 ACC-CGAA
8193 ACCCGAA
1 ACCCGAA
*
8200 ATCCCTAA
1 A-CCCGAA
8208 ACCCGAA
1 ACCCGAA
8215 ACCCG--
1 ACCCGAA
**
8220 ACCCCTA
1 ACCCGAA
*
8227 ACCCGCA
1 ACCCGAA
8234 ACCCGTAA
1 ACCCG-AA
8242 ACCCGGAA
1 ACCC-GAA
8250 ACCCGAA
1 ACCCGAA
8257 ACCCGAA
1 ACCCGAA
*
8264 AACCGAA
1 ACCCGAA
8271 A-CCGAA
1 ACCCGAA
8277 CACCCG-A
1 -ACCCGAA
8284 ACTCCGAA
1 AC-CCGAA
8292 ACCCGAA
1 ACCCGAA
8299 ACCCGAA
1 ACCCGAA
8306 ACTCCCGAA
1 A--CCCGAA
*
8315 ATCCCG-C
1 A-CCCGAA
8322 ACCCGAA
1 ACCCGAA
8329 ACCCGAAA
1 ACCCG-AA
8337 ATCCCGAA
1 A-CCCGAA
8345 ACCCGAA
1 ACCCGAA
8352 CACCCGAAA
1 -ACCCG-AA
8361 TACCCGAA
1 -ACCCGAA
*
8369 ACCCGAC
1 ACCCGAA
8376 ACCCGAAA
1 ACCCG-AA
*
8384 ACCCGCA
1 ACCCGAA
8391 ACCCGAA
1 ACCCGAA
8398 ACCCGAGAA
1 ACCC--GAA
8407 ACCCGAA
1 ACCCGAA
8414 ACCCGAA
1 ACCCGAA
8421 A-CCG-A
1 ACCCGAA
8426 ACCCGAA
1 ACCCGAA
8433 ACCCGAA
1 ACCCGAA
*
8440 A-CCGCA
1 ACCCGAA
*
8446 ACACCGCA
1 AC-CCGAA
*
8454 A-CCGTA
1 ACCCGAA
8460 ACCCGAA
1 ACCCGAA
8467 ACCCTGAA
1 ACCC-GAA
8475 ACCCGAA
1 ACCCGAA
8482 ACCCGAA
1 ACCCGAA
*
8489 ACCCTAA
1 ACCCGAA
*
8496 ACCCCCAA
1 A-CCCGAA
* *
8504 CCCCAAAA
1 ACCC-GAA
8512 ACCC-AA
1 ACCCGAA
*
8518 ACCC-CA
1 ACCCGAA
*
8524 ACCCCAA
1 ACCCGAA
*
8531 ACCCCAA
1 ACCCGAA
*
8538 TACTCCCAA
1 -AC-CCGAA
*
8547 ACCCCAA
1 ACCCGAA
8554 ACCCGCTTAA
1 ACCCG---AA
* *
8564 CCCCTAA
1 ACCCGAA
*
8571 ACCCCAA
1 ACCCGAA
8578 ACCCG-A
1 ACCCGAA
*
8584 ACCCCAA
1 ACCCGAA
*
8591 ACCCCATA
1 ACCCGA-A
*
8599 A-CCTAA
1 ACCCGAA
8605 ACCCGAA
1 ACCCGAA
**
8612 ACCCTCA
1 ACCCGAA
*
8619 ACCCTAA
1 ACCCGAA
*
8626 ACCCTAA
1 ACCCGAA
8633 A-CCGAA
1 ACCCGAA
8639 ACCCG-A
1 ACCCGAA
*
8645 ACCCTAAA
1 ACCC-GAA
8653 ACTCC-AA
1 AC-CCGAA
*
8660 ACCCTAA
1 ACCCGAA
*
8667 AACCGACA
1 ACCCGA-A
8675 A-CCGAA
1 ACCCGAA
*
8681 ACCCTAA
1 ACCCGAA
8688 ACCCGAA
1 ACCCGAA
*
8695 ACCCTAAA
1 ACCC-GAA
*
8703 ACCCTAA
1 ACCCGAA
*
8710 ACCCTAA
1 ACCCGAA
*
8717 A-CCTAA
1 ACCCGAA
*
8723 ACCC-TA
1 ACCCGAA
*
8729 ACCCTAA
1 ACCCGAA
*
8736 ACCCTAA
1 ACCCGAA
*
8743 ACCCTAA
1 ACCCGAA
*
8750 ACCCTTTAA
1 ACCC--GAA
*
8759 ACCCTAA
1 ACCCGAA
*
8766 ACCCTAA
1 ACCCGAA
*
8773 ACCCTAA
1 ACCCGAA
*
8780 ACCCTAAA
1 ACCC-GAA
*
8788 ACCCTAA
1 ACCCGAA
*
8795 A-CCTAA
1 ACCCGAA
*
8801 ACCC-TA
1 ACCCGAA
*
8807 ACCCTAA
1 ACCCGAA
**
8814 A--AAAA
1 ACCCGAA
*
8819 ACCCTAA
1 ACCCGAA
**
8826 ACCTTTAA
1 ACC-CGAA
*
8834 ACCCTAA
1 ACCCGAA
*
8841 ACCCTAA
1 ACCCGAA
*
8848 ACCCTAA
1 ACCCGAA
*
8855 A-CC-TA
1 ACCCGAA
*
8860 ACCCTAA
1 ACCCGAA
*
8867 A-CCTAA
1 ACCCGAA
*
8873 ACCCTAA
1 ACCCGAA
* *
8880 ACCCTCAC
1 ACCC-GAA
**
8888 ACCATAA
1 ACCCGAA
*
8895 ACCC-TA
1 ACCCGAA
*
8901 A-CCTAA
1 ACCCGAA
**
8907 ACCTAAA
1 ACCCGAA
*
8914 ACCCTAA
1 ACCCGAA
**
8921 ACCTAAA
1 ACCCGAA
*
8928 ACCCTAA
1 ACCCGAA
*
8935 A-CCTAA
1 ACCCGAA
*
8941 ACCCTAA
1 ACCCGAA
**
8948 ACCCTCA
1 ACCCGAA
*
8955 ACCCTAA
1 ACCCGAA
8962 ACCC---
1 ACCCGAA
*
8966 ACCCTAAA
1 ACCC-GAA
* *
8974 ACACTAA
1 ACCCGAA
*
8981 ACCCTAA
1 ACCCGAA
*
8988 ACCC-TA
1 ACCCGAA
* *
8994 CCCCTAA
1 ACCCGAA
**
9001 ACCCTTA
1 ACCCGAA
*
9008 ACCCTAA
1 ACCCGAA
* *
9015 ACCCTAC
1 ACCCGAA
*
9022 ACCCTAA
1 ACCCGAA
*
9029 ACCCTAA
1 ACCCGAA
*
9036 ACCCTAA
1 ACCCGAA
*
9043 A-CCTAA
1 ACCCGAA
9049 ACCTC---
1 ACC-CGAA
*
9054 ACCCAAA
1 ACCCGAA
**
9061 ACCTAAA
1 ACCCGAA
*
9068 ACCCTAA
1 ACCCGAA
*
9075 ACCCTAA
1 ACCCGAA
*
9082 A-CCTAA
1 ACCCGAA
*
9088 ACCCTAA
1 ACCCGAA
*
9095 ACCCTAA
1 ACCCGAA
*
9102 ACCCTAA
1 ACCCGAA
9109 ACACCGATAA
1 AC-CCG--AA
9119 ACCCGTAA
1 ACCCG-AA
9127 A-CCGTAA
1 ACCCG-AA
*
9134 ACCCTAA
1 ACCCGAA
**
9141 ACCCCTA
1 ACCCGAA
*
9148 ACCCTAA
1 ACCCGAA
*
9155 A-CCTAA
1 ACCCGAA
9161 ACCCTCG-A
1 A-CC-CGAA
*
9169 ACCCTAACAA
1 ACCC---GAA
*
9179 AGCTC-AA
1 A-CCCGAA
9186 ACCCGTAA
1 ACCCG-AA
*
9194 ACCCTAA
1 ACCCGAA
*
9201 ACCCTAA
1 ACCCGAA
*
9208 ACCCTAA
1 ACCCGAA
*
9215 ACCCTAA
1 ACCCGAA
9222 A-CCGAA
1 ACCCGAA
*
9228 ACCGCTAA
1 ACC-CGAA
9236 ACCCGAA
1 ACCCGAA
*
9243 ACCCTAA
1 ACCCGAA
*
9250 ACCCTAA
1 ACCCGAA
*
9257 ACCC-TA
1 ACCCGAA
*
9263 A-CCTAA
1 ACCCGAA
**
9269 ACCCTCA
1 ACCCGAA
*
9276 ACCCTAA
1 ACCCGAA
* *
9283 AACCTAA
1 ACCCGAA
*
9290 ACCCTAA
1 ACCCGAA
*
9297 ACCCTAA
1 ACCCGAA
*
9304 ACCCTAA
1 ACCCGAA
*
9311 CTACCC-TA
1 --ACCCGAA
*
9319 ACCCTAA
1 ACCCGAA
*
9326 TACCC-TA
1 -ACCCGAA
*
9333 A-CCTAA
1 ACCCGAA
*
9339 A-CC-TA
1 ACCCGAA
*
9344 ACCCTAA
1 ACCCGAA
*
9351 ACCCTAA
1 ACCCGAA
* *
9358 ACCCTAC
1 ACCCGAA
*
9365 ACCC--T
1 ACCCGAA
*
9370 A-CCTAA
1 ACCCGAA
*
9376 ACCCTACACTA
1 ACCC--GA--A
*
9387 ACCC-TA
1 ACCCGAA
*
9393 ACCCTAA
1 ACCCGAA
*
9400 ACCACCTAA
1 A-C-CCGAA
*
9409 ACCCTAA
1 ACCCGAA
*
9416 ACCCTAA
1 ACCCGAA
*
9423 ACCCTACA
1 ACCCGA-A
*
9431 CCACCCTAA
1 --ACCCGAA
9440 ACCTC-AA
1 ACC-CGAA
*
9447 A-CCTAA
1 ACCCGAA
* * *
9453 CCCCCTAG
1 -ACCCGAA
*
9461 ACCCTAGA
1 ACCCGA-A
*
9469 ACCCTAA
1 ACCCGAA
*
9476 ACCCTCTAA
1 A-CC-CGAA
*
9485 ACCCTAA
1 ACCCGAA
9492 A-CCGAA
1 ACCCGAA
*
9498 ACCCTAA
1 ACCCGAA
9505 ACCCGAA
1 ACCCGAA
9512 ACCCGAA
1 ACCCGAA
9519 ACCCGAA
1 ACCCGAA
9526 ACCCGAA
1 ACCCGAA
9533 ACCCGAA
1 ACCCGAA
*
9540 CCCCGAA
1 ACCCGAA
*
9547 CCCCGAA
1 ACCCGAA
*
9554 CCCCGAA
1 ACCCGAA
*
9561 CCCCGAA
1 ACCCGAA
*
9568 CCCCGAA
1 ACCCGAA
*
9575 CCCCGAA
1 ACCCGAA
*
9582 CCCCGAA
1 ACCCGAA
*
9589 CCCCGAA
1 ACCCGAA
*
9596 CCCCGAA
1 ACCCGAA
*
9603 CCCCGAA
1 ACCCGAA
*
9610 CCCCGAA
1 ACCCGAA
*
9617 CCCCGAA
1 ACCCGAA
*
9624 CCCCGAA
1 ACCCGAA
*
9631 CCCCGAA
1 ACCCGAA
*
9638 CCCCGAA
1 ACCCGAA
*
9645 CCCCGAA
1 ACCCGAA
*
9652 CCCCGAA
1 ACCCGAA
*
9659 CCCCGAA
1 ACCCGAA
*
9666 CCCCGAA
1 ACCCGAA
*
9673 CCCCGAA
1 ACCCGAA
*
9680 CCCCGAA
1 ACCCGAA
*
9687 CCCCGAA
1 ACCCGAA
*
9694 CCCCGAA
1 ACCCGAA
*
9701 CCCCGAA
1 ACCCGAA
*
9708 CCCCGAA
1 ACCCGAA
*
9715 CCCCGAA
1 ACCCGAA
*
9722 CCCCGAA
1 ACCCGAA
*
9729 CCCCGAA
1 ACCCGAA
*
9736 CCCCGAA
1 ACCCGAA
*
9743 CCCCGAA
1 ACCCGAA
*
9750 CCCCGAA
1 ACCCGAA
*
9757 CCCCGAA
1 ACCCGAA
*
9764 CCCCGAA
1 ACCCGAA
*
9771 CCCCGAA
1 ACCCGAA
*
9778 CCCCGAA
1 ACCCGAA
*
9785 CCCCGAA
1 ACCCGAA
*
9792 CCCCGAA
1 ACCCGAA
*
9799 CCCCGAA
1 ACCCGAA
*
9806 CCCCGAA
1 ACCCGAA
*
9813 CCCCGAA
1 ACCCGAA
*
9820 CCCCGAA
1 ACCCGAA
*
9827 CCCCGAA
1 ACCCGAA
9834 CCCTAAATCC
Statistics
Matches: 8289, Mismatches: 699, Indels: 1676
0.78 0.07 0.16
Matches are distributed among these distances:
4 7 0.00
5 136 0.02
6 1224 0.15
7 4545 0.55
8 1775 0.21
9 475 0.06
10 107 0.01
11 20 0.00
ACGTcount: A:0.41, C:0.42, G:0.12, T:0.05
Consensus pattern (7 bp):
ACCCGAA
Found at i:8852 original size:60 final size:60
Alignment explanation
Indices: 8610--9535 Score: 509
Period size: 60 Copynumber: 15.4 Consensus size: 60
8600 CCTAAACCCG
* * * * * *
8610 AAACCCTCAACCCTAAACCCTAAACCGAAACCC-GAACCCTAAAACTCCAAACCCTAAAACCG
1 AAACCCTAAACCCTAAACCCTAAACCTAAACCCTAAACCCTAAAA---AAAACCCTAAACCCT
* * **
8672 ACAA-CCGAAACCCTAAACCCGAAACCCTAAAACCCTAAACCCTAAACCTAAACCCT-AACCCT
1 A-AACCCTAAACCCTAAACCCTAAA-CCT-AAACCCTAAACCCTAAA-AAAAACCCTAAACCCT
8734 AAACCCTAAACCCTAAACCCTTTAAACCCTAAACCCTAAACCCT-----AAACCCTAAAACCCT
1 AAACCCTAAACCCTAAACCC--TAAA-CCTAAACCCTAAACCCTAAAAAAAACCCT-AAACCCT
** **
8793 AAA-CCTAAACCCT-AACCCTAAA-AAAAACCCTAAA-CCT---TTAAACCCTAAACCCT
1 AAACCCTAAACCCTAAACCCTAAACCTAAACCCTAAACCCTAAAAAAAACCCTAAACCCT
* * *
8846 AAACCCTAAA-CCT-AACCCTAAACCTAAACCCTAAACCCT----CACACCATAAACCCT
1 AAACCCTAAACCCTAAACCCTAAACCTAAACCCTAAACCCTAAAAAAAACCCTAAACCCT
8900 -AA-CCTAAA-CCTAAAACCCTAAACCTAAAACCCTAAA-CCT-----AAACCCTAAACCCT
1 AAACCCTAAACCCT-AAACCCTAAACCT-AAACCCTAAACCCTAAAAAAAACCCTAAACCCT
* **** *
8953 CAACCCTAAACCC---ACCCTAAAACACTAAACCCTAAACCCTACCCCTAAACCCTTAACCCT
1 AAACCCTAAACCCTAAACCCT-AAAC-CTAAACCCTAAACCCTA-AAAAAAACCCTAAACCCT
* ***
9013 AAACCCTACACCCTAAACCCTAAACCCTAAA-CCTAAA-CCTCACCCAAAA-CCTAAAACCCT
1 AAACCCTAAACCCTAAACCCTAAA-CCTAAACCCTAAACCCT-AAAAAAAACCCT-AAACCCT
* * *
9073 AAACCCTAAA-CCTAAACCCTAAACCCTAAACCCTAAACACC---GATAAACCCGTAAACCGT
1 AAACCCTAAACCCTAAACCCTAAA-CCTAAACCCTAAAC-CCTAAAAAAAACCC-TAAACCCT
*
9132 AAACCCTAAACCCCT-AACCCTAAACCTAAACCCTCGAACCCTAACAAAGCTCAAACCCGTAAAC
1 AAACCCTAAA-CCCTAAACCCTAAACCTAAACCCT-AAACCCTAA-AAA----AAACCC-TAAAC
9196 CCT
58 CCT
* * **
9199 AAACCCTAAACCCTAAACCCTAAACCGAAACCGCTAAACCCGAAACCCTAAACCCTAAACCCT
1 AAACCCTAAACCCTAAACCCTAAACCTAAACC-CTAAACCCTAAA--AAAAACCCTAAACCCT
* **
9262 -AA-CCTAAACCCTCAACCCTAAAACCTAAACCCTAAACCCTAAACCCTAACTACCCT-AACCCT
1 AAACCCTAAACCCTAAACCCT-AAACCTAAACCCTAAACCCTAAA----AAAAACCCTAAACCCT
* * ****
9324 AATACCCT-AA-CCTAAA-CCTAACCCTAAACCCTAAACCCTACACCCTA-CCTAAACCCT
1 AA-ACCCTAAACCCTAAACCCTAAACCTAAACCCTAAACCCTAAAAAAAACCCTAAACCCT
* **
9381 ACACTAACCCT-AACCCTAAACCACCTAAACCCTAAACCCTAAACCCT--ACACCACCCTAAA-C
1 --A--AACCCTAAACCCTAAA-C-CCTAAA-CCTAAACCCTAAACCCTAAAAAAAACCCTAAACC
9442 CT
59 CT
* * **
9444 CAAA-CCTAACCCCCTAGACCCTAGAACCCTAAACCCTCTAAACCCTAAACCGAAACCCTAAACC
1 -AAACCCTAA-ACCCTAAACCCTA-AA-CCTAAA-CC-CTAAACCCTAAA-AAAAACCCTAAACC
*
9508 CG
59 CT
* * *
9510 AAACCCGAAACCCGAAACCCGAAACC
1 AAACCCTAAACCCTAAACCCTAAACC
9536 CGAACCCCGA
Statistics
Matches: 715, Mismatches: 66, Indels: 165
0.76 0.07 0.17
Matches are distributed among these distances:
52 17 0.02
53 60 0.08
54 57 0.08
55 23 0.03
56 5 0.01
57 21 0.03
58 13 0.02
59 70 0.10
60 87 0.12
61 75 0.10
62 80 0.11
63 61 0.09
64 36 0.05
65 50 0.07
66 11 0.02
67 47 0.07
68 2 0.00
ACGTcount: A:0.42, C:0.42, G:0.02, T:0.14
Consensus pattern (60 bp):
AAACCCTAAACCCTAAACCCTAAACCTAAACCCTAAACCCTAAAAAAAACCCTAAACCCT
Found at i:9860 original size:7 final size:7
Alignment explanation
Indices: 9850--9910 Score: 63
Period size: 7 Copynumber: 8.9 Consensus size: 7
9840 ATCCTAATCC
9850 TTAACCT
1 TTAACCT
9857 TTAACCT
1 TTAACCT
9864 TTAACC-
1 TTAACCT
*
9870 TTAAACT
1 TTAACCT
*
9877 TTAACCCC
1 TTAA-CCT
9885 TTAACCT
1 TTAACCT
*
9892 CTAACC-
1 TTAACCT
*
9898 CTAACCT
1 TTAACCT
9905 TTAACC
1 TTAACC
9911 CTAATCTCCA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
6 11 0.24
7 29 0.64
8 5 0.11
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (7 bp):
TTAACCT
Found at i:9873 original size:13 final size:13
Alignment explanation
Indices: 9850--9910 Score: 68
Period size: 13 Copynumber: 4.5 Consensus size: 13
9840 ATCCTAATCC
9850 TTAACCTTTAACCT
1 TTAACC-TTAACCT
*
9864 TTAACCTTAAACT
1 TTAACCTTAACCT
9877 TTAACCCCTTAACCT
1 TTAA--CCTTAACCT
* *
9892 CTAACCCTAACCT
1 TTAACCTTAACCT
9905 TTAACC
1 TTAACC
9911 CTAATCTCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 23 0.57
14 6 0.15
15 11 0.28
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (13 bp):
TTAACCTTAACCT
Found at i:9890 original size:28 final size:28
Alignment explanation
Indices: 9857--9911 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
9847 TCCTTAACCT
* *
9857 TTAACCTTTAACCTTAAACTTTAACCCC
1 TTAACCTCTAACCCTAAACTTTAACCCC
*
9885 TTAACCTCTAACCCTAACCTTTAACCC
1 TTAACCTCTAACCCTAAACTTTAACCC
9912 TAATCTCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (28 bp):
TTAACCTCTAACCCTAAACTTTAACCCC
Found at i:9911 original size:13 final size:13
Alignment explanation
Indices: 9858--9914 Score: 69
Period size: 13 Copynumber: 4.2 Consensus size: 13
9848 CCTTAACCTT
*
9858 TAACCTTTAACCT
1 TAACCTTTAACCC
*
9871 TAAACTTTAACCCC
1 TAACCTTTAA-CCC
*
9885 TTAACCTCTAACCC
1 -TAACCTTTAACCC
9899 TAACCTTTAACCC
1 TAACCTTTAACCC
9912 TAA
1 TAA
9915 TCTCCAAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 24 0.65
14 5 0.14
15 8 0.22
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.32
Consensus pattern (13 bp):
TAACCTTTAACCC
Found at i:10679 original size:6 final size:6
Alignment explanation
Indices: 10668--10697 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
10658 ACCTTCTTAC
*
10668 TGCAAA TGCAAA TGCAAA TGCGAA TGCAAA
1 TGCAAA TGCAAA TGCAAA TGCAAA TGCAAA
10698 AGCCTATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.17
Consensus pattern (6 bp):
TGCAAA
Found at i:10991 original size:3 final size:3
Alignment explanation
Indices: 10983--11008 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10973 GGAGAGAGTT
10983 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
11009 TATGATGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:16873 original size:32 final size:32
Alignment explanation
Indices: 16837--16905 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 32
16827 TCAAAACTTT
* *
16837 TAATAACCGTCAAATTTATAACTAATTTTATA
1 TAATAACCATCAAATTTATAAATAATTTTATA
*** * *
16869 TAATATGTATTAAATTTATAAATAATTTTATT
1 TAATAACCATCAAATTTATAAATAATTTTATA
16901 TAATA
1 TAATA
16906 TTTATCGAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (32 bp):
TAATAACCATCAAATTTATAAATAATTTTATA
Found at i:16906 original size:32 final size:31
Alignment explanation
Indices: 16848--16975 Score: 107
Period size: 32 Copynumber: 4.1 Consensus size: 31
16838 AATAACCGTC
* *
16848 AAATTTATAACTAATTTTATATAATATGTATT
1 AAATTTATAAATAATTTTATTTAATAT-TATT
*
16880 AAATTTATAAATAATTTTATTTAATATTTATC
1 AAATTTATAAATAATTTTATTTAATA-TTATT
* * * * *
16912 GAATTTACAAGTAATTATGTTTAAT-TTATT
1 AAATTTATAAATAATTTTATTTAATATTATT
* * * *
16942 AAATTTATGATTAATATTAATTTAAT-TTTTT
1 AAATTTATAAATAAT-TTTATTTAATATTATT
16973 AAA
1 AAA
16976 ACATTATGTT
Statistics
Matches: 77, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
30 15 0.19
31 14 0.18
32 47 0.61
33 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (31 bp):
AAATTTATAAATAATTTTATTTAATATTATT
Found at i:17973 original size:18 final size:18
Alignment explanation
Indices: 17950--17985 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
17940 ATTACACTGC
17950 AATAATTT-TTAATTATCA
1 AATAATTTATT-ATTATCA
17968 AATAATTTATTATTATCA
1 AATAATTTATTATTATCA
17986 TTACTACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
AATAATTTATTATTATCA
Found at i:18261 original size:2 final size:2
Alignment explanation
Indices: 18248--18285 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
18238 ACCTTTCATG
*
18248 AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18286 TCATATTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:18518 original size:18 final size:16
Alignment explanation
Indices: 18491--18533 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
18481 TCTGGAATGA
*
18491 TAGATATTGTTCTTGAT
1 TAGATCTTGTTC-TGAT
18508 CTAGATCTTGTTCTGAT
1 -TAGATCTTGTTCTGAT
*
18525 TAAATCTTG
1 TAGATCTTG
18534 AGCGAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 8 0.35
17 4 0.17
18 11 0.48
ACGTcount: A:0.23, C:0.12, G:0.16, T:0.49
Consensus pattern (16 bp):
TAGATCTTGTTCTGAT
Found at i:18533 original size:16 final size:18
Alignment explanation
Indices: 18497--18533 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
18487 ATGATAGATA
*
18497 TTGTTCTTGATCTAGATC
1 TTGTTCTTGATCTAAATC
18515 TTGTTC-TGAT-TAAATC
1 TTGTTCTTGATCTAAATC
18531 TTG
1 TTG
18534 AGCGAAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 4 0.22
18 6 0.33
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (18 bp):
TTGTTCTTGATCTAAATC
Found at i:21356 original size:15 final size:15
Alignment explanation
Indices: 21336--21364 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
21326 AATTAGAGCC
21336 TTTTCTTTTTTTTCT
1 TTTTCTTTTTTTTCT
21351 TTTTCTTTTTTTTC
1 TTTTCTTTTTTTTC
21365 CCTTTCCCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTCTTTTTTTTCT
Found at i:21370 original size:15 final size:15
Alignment explanation
Indices: 21337--21370 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
21327 ATTAGAGCCT
**
21337 TTTCTTTTTTTTCTT
1 TTTCTTTTTTTTCCC
21352 TTTCTTTTTTTTCCC
1 TTTCTTTTTTTTCCC
21367 TTTC
1 TTTC
21371 CCCCGCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCTTTTTTTTCCC
Found at i:21647 original size:14 final size:14
Alignment explanation
Indices: 21628--21657 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
21618 ATGTCCGAGA
21628 TTGGGTAAGATTGC
1 TTGGGTAAGATTGC
21642 TTGGGTAAGATTGC
1 TTGGGTAAGATTGC
21656 TT
1 TT
21658 TTTGCCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.33, T:0.40
Consensus pattern (14 bp):
TTGGGTAAGATTGC
Found at i:21766 original size:61 final size:61
Alignment explanation
Indices: 21649--21767 Score: 150
Period size: 61 Copynumber: 2.0 Consensus size: 61
21639 TGCTTGGGTA
* * * *
21649 AGATTGCTTTTTGCCATCAACTTTGTGATACGGAGATGGAGTGCGTGGTCACGGAATCATT
1 AGATTGCTTTTTGCCATCAACTTAGTGATACAGAGATGGAATGCGTGGCCACGGAATCATT
* * * *
21710 AGATTGCTTTTTTCCATCAACTTAGTGATATAGAGAT-GAATGGGTGGGCCAGGGAATC
1 AGATTGCTTTTTGCCATCAACTTAGTGATACAGAGATGGAATGCGT-GGCCACGGAATC
21768 CATGCAAGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 6 0.12
61 43 0.88
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (61 bp):
AGATTGCTTTTTGCCATCAACTTAGTGATACAGAGATGGAATGCGTGGCCACGGAATCATT
Found at i:27212 original size:18 final size:18
Alignment explanation
Indices: 27189--27223 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
27179 AATCAAAATA
27189 ATTTTAACAAATTCGTAT
1 ATTTTAACAAATTCGTAT
27207 ATTTTAACAAATTCGTA
1 ATTTTAACAAATTCGTA
27224 CTTTCTCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (18 bp):
ATTTTAACAAATTCGTAT
Found at i:29108 original size:13 final size:13
Alignment explanation
Indices: 29090--29114 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29080 ATAATCCCCC
29090 TGTATCGATACAG
1 TGTATCGATACAG
29103 TGTATCGATACA
1 TGTATCGATACA
29115 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:31216 original size:15 final size:15
Alignment explanation
Indices: 31196--31226 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
31186 ATTTCGTTTG
*
31196 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
31211 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
31226 G
1 G
31227 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:35348 original size:32 final size:33
Alignment explanation
Indices: 35285--35348 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
35275 TACAAGCTAA
** *
35285 TGTATCGATACAATTTTTTGTGTATCAATACAT
1 TGTATCGATACAATACTTTGTCTATCAATACAT
*
35318 TGTATCGATAC-ATACTTTGTCTATCGATACA
1 TGTATCGATACAATACTTTGTCTATCAATACA
35349 AGTTTGGCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTCTATCAATACAT
Found at i:36797 original size:20 final size:21
Alignment explanation
Indices: 36772--36810 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36762 AAAATGATGA
*
36772 AGAATA-TTAGAGAAGAATGG
1 AGAATATTTACAGAAGAATGG
36792 AGAATATTTACAGAAGAAT
1 AGAATATTTACAGAAGAAT
36811 AAGAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (21 bp):
AGAATATTTACAGAAGAATGG
Found at i:36815 original size:20 final size:20
Alignment explanation
Indices: 36768--36817 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
36758 AAAGAAAATG
*
36768 ATGAAGAATATTAGAGAAGA
1 ATGAAGAATATTACAGAAGA
*
36788 ATGGAGAATATTTACAGAAGA
1 ATGAAGAATA-TTACAGAAGA
36809 AT-AAGAATA
1 ATGAAGAATA
36818 AAAAGTGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.54, C:0.02, G:0.22, T:0.22
Consensus pattern (20 bp):
ATGAAGAATATTACAGAAGA
Found at i:38701 original size:13 final size:13
Alignment explanation
Indices: 38683--38707 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38673 CAAAAAGTGT
38683 TGTATCGATACAA
1 TGTATCGATACAA
38696 TGTATCGATACA
1 TGTATCGATACA
38708 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:38723 original size:32 final size:33
Alignment explanation
Indices: 38663--38728 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
38653 TTCAATGATT
38663 TGTATCAATACAAAAAGTGTTGTATCGATACAA
1 TGTATCAATACAAAAAGTGTTGTATCGATACAA
* * *
38696 TGTATCGATAC-ATAAGTTTTGTATCGATACAA
1 TGTATCAATACAAAAAGTGTTGTATCGATACAA
38728 T
1 T
38729 ATAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 20 0.67
33 10 0.33
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCAATACAAAAAGTGTTGTATCGATACAA
Found at i:38847 original size:52 final size:52
Alignment explanation
Indices: 38769--38918 Score: 239
Period size: 52 Copynumber: 2.9 Consensus size: 52
38759 CATTACTCAA
** *
38769 ATGTATCGATACACTGAT-ATTTGTATCAATACATGCAGGCAAATTTGCCTAG
1 ATGTATCGATACACT-ATAAAATGTATCGATACATGCAGGCAAATTTGCCTAG
*
38821 ATGTATCGATATACTATAAAATGTATCGATACATGCAGGCAAATTTGCCTAG
1 ATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCTAG
*
38873 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTT
1 ATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTT
38919 TCATATTTCG
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
51 2 0.02
52 89 0.98
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (52 bp):
ATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCTAG
Found at i:45675 original size:52 final size:52
Alignment explanation
Indices: 45527--45655 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
45517 CGAAATATGA
45527 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
45579 AAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
45631 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
45656 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:45682 original size:13 final size:13
Alignment explanation
Indices: 45664--45688 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45654 CAAAGATCAG
45664 TGTATCGATACAA
1 TGTATCGATACAA
45677 TGTATCGATACA
1 TGTATCGATACA
45689 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:45767 original size:32 final size:33
Alignment explanation
Indices: 45726--45794 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
45716 GGCAGTAGCT
45726 TACATTGTATCGATACAAAAC-ATATGTATCGA
1 TACATTGTATCGATACAAAACTATATGTATCGA
* *
45758 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTATATGTATCGA
45791 TACA
1 TACA
45795 AATCGTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 20 0.59
33 14 0.41
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTATATGTATCGA
Found at i:45768 original size:13 final size:14
Alignment explanation
Indices: 45745--45774 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
45735 TCGATACAAA
45745 ACATATGTATCGAT
1 ACATATGTATCGAT
45759 ACAT-TGTATCGAT
1 ACATATGTATCGAT
45772 ACA
1 ACA
45775 ACACTTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (14 bp):
ACATATGTATCGAT
Found at i:52375 original size:17 final size:18
Alignment explanation
Indices: 52343--52378 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
52333 AGTAGTAATG
*
52343 AAAGATGAATAGAAAAAA
1 AAAGATGAACAGAAAAAA
52361 AAAGA-GAACAGAAAAAA
1 AAAGATGAACAGAAAAAA
52378 A
1 A
52379 TGAAAAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.06
Consensus pattern (18 bp):
AAAGATGAACAGAAAAAA
Found at i:52664 original size:19 final size:20
Alignment explanation
Indices: 52629--52667 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
52619 ATTTTATTCA
52629 ATTAAAAATTAAATTAAAAT
1 ATTAAAAATTAAATTAAAAT
*
52649 ATTAAATATT-AATTAAAAT
1 ATTAAAAATTAAATTAAAAT
52668 TTATTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTAAAAATTAAATTAAAAT
Found at i:57489 original size:3 final size:3
Alignment explanation
Indices: 57475--57515 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
57465 CTGATATATT
*
57475 ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
57516 TTACGTGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:59717 original size:84 final size:84
Alignment explanation
Indices: 59576--59746 Score: 342
Period size: 84 Copynumber: 2.0 Consensus size: 84
59566 TTGAATCTAG
59576 ATTACTCCCAGGCTTACACTTAGTAAAAAACAATCTAATTCCTTCCAAAAACTCTCCATTCACCA
1 ATTACTCCCAGGCTTACACTTAGTAAAAAACAATCTAATTCCTTCCAAAAACTCTCCATTCACCA
59641 AATACCTTGAAGGAATGGC
66 AATACCTTGAAGGAATGGC
59660 ATTACTCCCAGGCTTACACTTAGTAAAAAACAATCTAATTCCTTCCAAAAACTCTCCATTCACCA
1 ATTACTCCCAGGCTTACACTTAGTAAAAAACAATCTAATTCCTTCCAAAAACTCTCCATTCACCA
59725 AATACCTTGAAGGAATGGC
66 AATACCTTGAAGGAATGGC
59744 ATT
1 ATT
59747 CAATTGAATC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 87 1.00
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.27
Consensus pattern (84 bp):
ATTACTCCCAGGCTTACACTTAGTAAAAAACAATCTAATTCCTTCCAAAAACTCTCCATTCACCA
AATACCTTGAAGGAATGGC
Found at i:66854 original size:13 final size:13
Alignment explanation
Indices: 66836--66863 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
66826 ATACAAAGAT
66836 CAATGTATCGATA
1 CAATGTATCGATA
66849 CAATGTATCGATA
1 CAATGTATCGATA
66862 CA
1 CA
66864 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:66860 original size:33 final size:33
Alignment explanation
Indices: 66818--66883 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
66808 ATTTACCTGC
66818 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-AATGTATCGATACA
**
66851 ATGTATCGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
66884 TTGAATAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:66875 original size:20 final size:20
Alignment explanation
Indices: 66850--66945 Score: 192
Period size: 20 Copynumber: 4.8 Consensus size: 20
66840 GTATCGATAC
66850 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
66870 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
66890 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
66910 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
66930 AATGTATCGATACATT
1 AATGTATCGATACATT
66946 TCTTTGGCAG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 76 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:66999 original size:19 final size:19
Alignment explanation
Indices: 66975--67059 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 19
66965 AGCGATACAT
66975 TGTATCGATACAATACTTA
1 TGTATCGATACAATACTTA
66994 TGTATCGATAC---A--T-
1 TGTATCGATACAATACTTA
* *
67007 TGTATGGATACAACACTTA
1 TGTATCGATACAATACTTA
* *
67026 TGTATCGATACATTTACTGTT
1 TGTATCGATACA-ATACT-TA
67047 TGTATCGATACAA
1 TGTATCGATACAA
67060 ATTGTTGAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
13 10 0.19
14 1 0.02
16 2 0.04
18 1 0.02
19 22 0.42
20 3 0.06
21 13 0.25
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (19 bp):
TGTATCGATACAATACTTA
Found at i:67008 original size:32 final size:32
Alignment explanation
Indices: 66962--67039 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
66952 GCAGTAGCTT
* *
66962 TGTAGCGATACATTGTATCGATACAATACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
*
66994 TGTATCGATACATTGTATGGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
67026 TGTATCGATACATT
1 TGTATCGATACATT
67040 TACTGTTTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:77662 original size:17 final size:17
Alignment explanation
Indices: 77631--77677 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
77621 TATTTTTTGA
* *
77631 TTTATATTTAAATAAATT
1 TTTAT-TTTATATAAAAT
77649 TTTATTTTATATAAAAT
1 TTTATTTTATATAAAAT
*
77666 TTTAATTTATAT
1 TTTATTTTATAT
77678 TATGAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATTTTATATAAAAT
Found at i:77741 original size:25 final size:25
Alignment explanation
Indices: 77695--77742 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
77685 TTATTTAGGT
*
77695 AAATAAAATTTATTGAACAAAATAA
1 AAATAAAATTTATTAAACAAAATAA
*
77720 AAAT-AAATTTATTTAAATAAAAT
1 AAATAAAATTTA-TTAAACAAAAT
77743 GAAAGTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (25 bp):
AAATAAAATTTATTAAACAAAATAA
Found at i:85844 original size:2 final size:2
Alignment explanation
Indices: 85837--85869 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
85827 ACCAAAATAA
85837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
85870 AGCATGTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:87294 original size:6 final size:6
Alignment explanation
Indices: 87279--87314 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
87269 GAGTGATGTA
*
87279 ATTG-G ATTGAG ATTGAG ATTGAG ACTGAG ATTGAG A
1 ATTGAG ATTGAG ATTGAG ATTGAG ATTGAG ATTGAG A
87315 AGTGCACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.31
Consensus pattern (6 bp):
ATTGAG
Found at i:88232 original size:2 final size:2
Alignment explanation
Indices: 88227--88260 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
88217 TATAGGTGTG
88227 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
88261 AGATTATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:89641 original size:32 final size:32
Alignment explanation
Indices: 89603--89665 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
89593 GGAATGCTAC
*
89603 GCAATGTCTTATTAACTTATAGGACCATGCAT
1 GCAATGTCTTATTAACCTATAGGACCATGCAT
*
89635 GCAATGTCTTATTAGCCTATAGGACCATGCA
1 GCAATGTCTTATTAACCTATAGGACCATGCA
89666 GACAGATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (32 bp):
GCAATGTCTTATTAACCTATAGGACCATGCAT
Found at i:95887 original size:2 final size:2
Alignment explanation
Indices: 95880--95918 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
95870 GTTAATCCTG
95880 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95919 TTCTTTGCTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98861 original size:27 final size:28
Alignment explanation
Indices: 98830--98907 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 28
98820 AAAAGCCACC
*
98830 TTTTGTGTTTGTCAAAAATGGTGGTT-A
1 TTTTGTGTTTGTCAAAAATTGTGGTTCA
* * *
98857 TTTTGTATTTGTCAAAAATTGTAGTTCC
1 TTTTGTGTTTGTCAAAAATTGTGGTTCA
98885 TTTT-TGTTTGTCAAAAATTGTGG
1 TTTTGTGTTTGTCAAAAATTGTGG
98908 CTTGTTATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
27 40 0.91
28 4 0.09
ACGTcount: A:0.23, C:0.06, G:0.21, T:0.50
Consensus pattern (28 bp):
TTTTGTGTTTGTCAAAAATTGTGGTTCA
Found at i:98923 original size:24 final size:24
Alignment explanation
Indices: 98862--98933 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
98852 GGTTATTTTG
* *
98862 TATTTGTCAAAAATTGTAGTTCCTTTT
1 TATTTGTCAAAAATTGT-G--GCTTGT
*
98889 TGTTTGTCAAAAATTGTGGCTTGT
1 TATTTGTCAAAAATTGTGGCTTGT
98913 TATTTGTC-AAAATTGGTGGCT
1 TATTTGTCAAAAATT-GTGGCT
98934 AATTTTTATT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 6 0.15
24 17 0.43
26 1 0.03
27 16 0.40
ACGTcount: A:0.24, C:0.10, G:0.19, T:0.47
Consensus pattern (24 bp):
TATTTGTCAAAAATTGTGGCTTGT
Found at i:99016 original size:14 final size:14
Alignment explanation
Indices: 98999--99042 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
98989 CCTCTCAAGC
98999 ATCCCCTCTCTTGT
1 ATCCCCTCTCTTGT
*
99013 AT-CCCTCTATTGT
1 ATCCCCTCTCTTGT
99026 ATCCCCTCTCTTGT
1 ATCCCCTCTCTTGT
99040 ATC
1 ATC
99043 ACTCTTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.11, C:0.39, G:0.07, T:0.43
Consensus pattern (14 bp):
ATCCCCTCTCTTGT
Found at i:99018 original size:13 final size:13
Alignment explanation
Indices: 99002--99054 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
98992 CTCAAGCATC
99002 CCCTCTCTTGTAT
1 CCCTCTCTTGTAT
*
99015 CCCTCTATTGTAT
1 CCCTCTCTTGTAT
99028 CCCCTCTCTTGTAT
1 -CCCTCTCTTGTAT
* *
99042 CACTCTTTTGTAT
1 CCCTCTCTTGTAT
99055 TTCTCTTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
13 23 0.66
14 12 0.34
ACGTcount: A:0.11, C:0.34, G:0.08, T:0.47
Consensus pattern (13 bp):
CCCTCTCTTGTAT
Found at i:99029 original size:27 final size:27
Alignment explanation
Indices: 98999--99054 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
98989 CCTCTCAAGC
*
98999 ATCCCCTCTCTTGTATCCCTCTATTGT
1 ATCCCCTCTCTTGTATCACTCTATTGT
*
99026 ATCCCCTCTCTTGTATCACTCTTTTGT
1 ATCCCCTCTCTTGTATCACTCTATTGT
99053 AT
1 AT
99055 TTCTCTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.12, C:0.34, G:0.07, T:0.46
Consensus pattern (27 bp):
ATCCCCTCTCTTGTATCACTCTATTGT
Found at i:101942 original size:21 final size:21
Alignment explanation
Indices: 101918--101969 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
101908 GGTATTTGCA
101918 AAGAAAGATGGATCTTCTAGC
1 AAGAAAGATGGATCTTCTAGC
101939 AAGAAAGATGGATCTTCTAGC
1 AAGAAAGATGGATCTTCTAGC
101960 AAGAAAGATG
1 AAGAAAGATG
101970 TTCGTTACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (21 bp):
AAGAAAGATGGATCTTCTAGC
Found at i:103465 original size:27 final size:27
Alignment explanation
Indices: 103435--103500 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
103425 ACCCTTTATG
*
103435 TTTGTCAAAAATGGTGGTTACTTTGTA
1 TTTGTCAAAAATGGTGATTACTTTGTA
* * * *
103462 TTTGTAAAAAATGGTGATTCCTTTTTG
1 TTTGTCAAAAATGGTGATTACTTTGTA
103489 TTTGTCAAAAAT
1 TTTGTCAAAAAT
103501 TATGGCTTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (27 bp):
TTTGTCAAAAATGGTGATTACTTTGTA
Found at i:103616 original size:13 final size:13
Alignment explanation
Indices: 103600--103644 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
103590 CTCAAGCATC
103600 CCCTCTCTTGTAT
1 CCCTCTCTTGTAT
* *
103613 CCCTCTATTATAT
1 CCCTCTCTTGTAT
*
103626 CTCTCTCTTGTAT
1 CCCTCTCTTGTAT
*
103639 CTCTCT
1 CCCTCT
103645 TCAATTCTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.11, C:0.36, G:0.04, T:0.49
Consensus pattern (13 bp):
CCCTCTCTTGTAT
Found at i:113040 original size:6 final size:6
Alignment explanation
Indices: 113030--113071 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
113020 ATAAAAATAA
* *
113030 GATTTG AATTTG GATTTG GATTTG GATTTG GATTTG CATTTG
1 GATTTG GATTTG GATTTG GATTTG GATTTG GATTTG GATTTG
113072 TTTTTGAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.19, C:0.02, G:0.29, T:0.50
Consensus pattern (6 bp):
GATTTG
Found at i:130772 original size:15 final size:15
Alignment explanation
Indices: 130752--130786 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
130742 ATCATATTAT
130752 TCCCCCGTCCCCCCC
1 TCCCCCGTCCCCCCC
130767 TCCCCCGTCCCCCCC
1 TCCCCCGTCCCCCCC
130782 -CCCCC
1 TCCCCC
130787 CCAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.00, C:0.83, G:0.06, T:0.11
Consensus pattern (15 bp):
TCCCCCGTCCCCCCC
Found at i:134500 original size:2 final size:2
Alignment explanation
Indices: 134488--134522 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
134478 CTATATTCTG
* *
134488 AT AT AT CT AT AT AT AT AT AT AT AT AT AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
134523 GAACATGTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:134965 original size:24 final size:24
Alignment explanation
Indices: 134931--134988 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 24
134921 CTAAGTTGTG
* *
134931 ATTTTTAAAATATGATATTTAATAT
1 ATTTTTAAATTATGATATAT-ATAT
*
134956 ATTTTTAAATTGTGATATATATAT
1 ATTTTTAAATTATGATATATATAT
*
134980 ATTTATAAA
1 ATTTTTAAA
134989 GAGAAAAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 12 0.41
25 17 0.59
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (24 bp):
ATTTTTAAATTATGATATATATAT
Found at i:135115 original size:2 final size:2
Alignment explanation
Indices: 135108--135142 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
135098 AAAAGAGAAG
135108 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
135143 GTCTGTGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:137479 original size:15 final size:15
Alignment explanation
Indices: 137459--137490 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
137449 ATTACATTGC
137459 CACAGTTATTGGTTG
1 CACAGTTATTGGTTG
137474 CACAGTTATTGGTTG
1 CACAGTTATTGGTTG
137489 CA
1 CA
137491 GTTGACATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (15 bp):
CACAGTTATTGGTTG
Found at i:144226 original size:2 final size:2
Alignment explanation
Indices: 144219--144248 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
144209 TTTTATCTAA
144219 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
144249 GTGAGTGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:149885 original size:3 final size:3
Alignment explanation
Indices: 149877--149904 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
149867 ATGGTTAGTG
149877 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
149905 TTCCTTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:155940 original size:41 final size:41
Alignment explanation
Indices: 155843--156009 Score: 226
Period size: 42 Copynumber: 4.0 Consensus size: 41
155833 TCATCATACT
* * *
155843 GCAAAAATCGAAAGACTTTTAATTAAATCCGAAAGCAGGAAA
1 GCAAAAATCGAAAGACATTCAATTAAATCCAAAAGCAGG-AA
* * * *
155885 GCAAAAATCCAAAGACTTTTAATTAAATCCGAAAGCAGGAA
1 GCAAAAATCGAAAGACATTCAATTAAATCCAAAAGCAGGAA
*
155926 GCAAAAATCGAAAGACATTCAATGAAATCCAAAAGCAGGAA
1 GCAAAAATCGAAAGACATTCAATTAAATCCAAAAGCAGGAA
* *
155967 TGCAAAAATTGAAAGACATTCAATTAAATCCAAAAACAGGAA
1 -GCAAAAATCGAAAGACATTCAATTAAATCCAAAAGCAGGAA
156009 G
1 G
156010 ATGAAGTTAT
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
41 39 0.34
42 76 0.66
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (41 bp):
GCAAAAATCGAAAGACATTCAATTAAATCCAAAAGCAGGAA
Found at i:155982 original size:83 final size:83
Alignment explanation
Indices: 155843--156009 Score: 235
Period size: 83 Copynumber: 2.0 Consensus size: 83
155833 TCATCATACT
* * * * * *
155843 GCAAAAATCGAAAGACTTTTAATTAAATCCGAAAGCAGGAAAGCAAAAATCCAAAGACTTTTAAT
1 GCAAAAATCGAAAGACATTCAATGAAATCCAAAAGCAGGAAAGCAAAAATCCAAAGACATTCAAT
* *
155908 TAAATCCGAAAGCAGGAA
66 TAAATCCAAAAACAGGAA
* **
155926 GCAAAAATCGAAAGACATTCAATGAAATCCAAAAGCAGGAATGCAAAAATTGAAAGACATTCAAT
1 GCAAAAATCGAAAGACATTCAATGAAATCCAAAAGCAGGAAAGCAAAAATCCAAAGACATTCAAT
155991 TAAATCCAAAAACAGGAA
66 TAAATCCAAAAACAGGAA
156009 G
1 G
156010 ATGAAGTTAT
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
83 73 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (83 bp):
GCAAAAATCGAAAGACATTCAATGAAATCCAAAAGCAGGAAAGCAAAAATCCAAAGACATTCAAT
TAAATCCAAAAACAGGAA
Found at i:157843 original size:17 final size:17
Alignment explanation
Indices: 157817--157850 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
157807 TTACGTTACT
* *
157817 TATTTGATAAATAATAA
1 TATTTAATAAAAAATAA
157834 TATTTAATAAAAAATAA
1 TATTTAATAAAAAATAA
157851 ATAACAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TATTTAATAAAAAATAA
Found at i:158320 original size:20 final size:20
Alignment explanation
Indices: 158223--158322 Score: 78
Period size: 20 Copynumber: 5.5 Consensus size: 20
158213 ATGGAAGGTT
*
158223 ATATTTAAAATA-TTATAT-
1 ATATTTAATATATTTATATA
*
158241 ATATATATATATATTTATATA
1 ATATTTA-ATATATTTATATA
158262 AT-TGTTAATATA-TTA-AT-
1 ATAT-TTAATATATTTATATA
158279 -TATTT-ATAT-TTTATA-A
1 ATATTTAATATATTTATATA
*
158295 AT-TTTAAAATATTTATATA
1 ATATTTAATATATTTATATA
158314 ATATTTAAT
1 ATATTTAAT
158323 TGTTTTTACA
Statistics
Matches: 64, Mismatches: 5, Indels: 24
0.69 0.05 0.26
Matches are distributed among these distances:
15 7 0.11
16 7 0.11
17 5 0.08
18 14 0.22
19 10 0.16
20 17 0.27
21 4 0.06
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (20 bp):
ATATTTAATATATTTATATA
Found at i:160576 original size:21 final size:22
Alignment explanation
Indices: 160552--160594 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
160542 TTAAAAAAAA
*
160552 AAATTATAAATTT-TAAGATAT
1 AAATTATAAATTTATAAAATAT
*
160573 AAATTTTAAATTTATAAAATAT
1 AAATTATAAATTTATAAAATAT
160595 TATTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
AAATTATAAATTTATAAAATAT
Found at i:160590 original size:15 final size:15
Alignment explanation
Indices: 160554--160590 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
160544 AAAAAAAAAA
160554 ATTATAAATTTTAAG
1 ATTATAAATTTTAAG
160569 A-TATAAATTTTAA-
1 ATTATAAATTTTAAG
160582 ATTTATAAA
1 A-TTATAAA
160591 ATATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 1 0.05
14 12 0.60
15 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (15 bp):
ATTATAAATTTTAAG
Found at i:160916 original size:17 final size:17
Alignment explanation
Indices: 160891--160940 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
160881 CGAATTTAAA
*
160891 AATAATTATTAAATATT
1 AATATTTATTAAATATT
* *
160908 AATATTTATTTAATATA
1 AATATTTATTAAATATT
*
160925 AATATTT-TTAATTATT
1 AATATTTATTAAATATT
160941 TAAAATTTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 6 0.22
17 21 0.78
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATATTTATTAAATATT
Found at i:161491 original size:32 final size:32
Alignment explanation
Indices: 161448--161529 Score: 96
Period size: 32 Copynumber: 2.5 Consensus size: 32
161438 TTATAGTTAA
* *
161448 ATTTATATAAATTTTGATATA-TT-AATAATTT
1 ATTTATATAAATTTTAATAAATTTAAAT-ATTT
161479 ATATTATATAAATTTTAATAAATTTAAATATTT
1 AT-TTATATAAATTTTAATAAATTTAAATATTT
*
161512 ATTTATATTATATTTTAA
1 ATTTATA-TAAATTTTAA
161530 ATTATTTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
31 2 0.05
32 22 0.50
33 17 0.39
34 3 0.07
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (32 bp):
ATTTATATAAATTTTAATAAATTTAAATATTT
Found at i:161523 original size:42 final size:43
Alignment explanation
Indices: 161410--161532 Score: 103
Period size: 42 Copynumber: 2.8 Consensus size: 43
161400 TAGATTTCAT
* *
161410 AATTTAAATAGTCTATGTTATATTGTGATTATAGTTAAA-TTTATATA
1 AATTTAAATA-TTTAT-TTATATTAT-ATTATA--TAAATTTTATATA
** * *
161457 AATTTTGATATATTAATAAT-TTATATTATATAAATTTTA-ATA
1 AATTTAAATAT-TTATTTATATTATATTATATAAATTTTATATA
161499 AATTTAAATATTTATTTATATTATATT-T-TAAATT
1 AATTTAAATATTTATTTATATTATATTATATAAATT
161533 ATTTTAATTA
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
40 6 0.10
41 7 0.11
42 23 0.37
43 4 0.06
44 6 0.10
45 3 0.05
46 4 0.06
47 10 0.16
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (43 bp):
AATTTAAATATTTATTTATATTATATTATATAAATTTTATATA
Found at i:164877 original size:7 final size:7
Alignment explanation
Indices: 164865--164904 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
164855 CAGAATCCTG
164865 CATTGGT
1 CATTGGT
164872 CATTGGT
1 CATTGGT
*
164879 CATT-GC
1 CATTGGT
164885 CATTGGT
1 CATTGGT
*
164892 CATTAGT
1 CATTGGT
164899 CATTGG
1 CATTGG
164905 ATTCTGGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.40
Consensus pattern (7 bp):
CATTGGT
Found at i:164890 original size:20 final size:20
Alignment explanation
Indices: 164865--164903 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
164855 CAGAATCCTG
*
164865 CATTGGTCATTGGTCATTGC
1 CATTGGTCATTAGTCATTGC
164885 CATTGGTCATTAGTCATTG
1 CATTGGTCATTAGTCATTG
164904 GATTCTGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (20 bp):
CATTGGTCATTAGTCATTGC
Found at i:170692 original size:20 final size:20
Alignment explanation
Indices: 170647--170692 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
170637 TTTATACTCT
* *
170647 AATTTATCAAAAAATATATT
1 AATTTATCAAAAAATAAATA
**
170667 GTTTTATCAAAAAATAAATA
1 AATTTATCAAAAAATAAATA
170687 AATTTA
1 AATTTA
170693 AAACTAAAAC
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (20 bp):
AATTTATCAAAAAATAAATA
Found at i:173457 original size:16 final size:17
Alignment explanation
Indices: 173438--173470 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
173428 TTATATTTTT
173438 AATT-AATTTTAATAAA
1 AATTAAATTTTAATAAA
*
173454 AATTAAATTTTATTAAA
1 AATTAAATTTTAATAAA
173471 TAATAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTAAATTTTAATAAA
Found at i:174775 original size:42 final size:42
Alignment explanation
Indices: 174716--174798 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
174706 CGGGTCACCA
*
174716 TTAGATCTATTAATGTAGCTCATTTTATATATATATTTATAG
1 TTAGATCTATTAATGTAGCTCATTTTATATATATATATATAG
174758 TTAGATCTATTAATGTAGCTCATTTTATATATATATATATA
1 TTAGATCTATTAATGTAGCTCATTTTATATATATATATATA
174799 TATATATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.49
Consensus pattern (42 bp):
TTAGATCTATTAATGTAGCTCATTTTATATATATATATATAG
Found at i:174790 original size:2 final size:2
Alignment explanation
Indices: 174783--174814 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
174773 TAGCTCATTT
*
174783 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
174815 GATTATAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:176890 original size:13 final size:14
Alignment explanation
Indices: 176873--176911 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
176863 AAAAATTAAC
176873 TTAATTAATTTATA
1 TTAATTAATTTATA
*
176887 -TAATTAATTAATA
1 TTAATTAATTTATA
*
176900 TTAATAAATTTA
1 TTAATTAATTTA
176912 AAATTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTAATTAATTTATA
Found at i:180098 original size:5 final size:5
Alignment explanation
Indices: 180091--180120 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
180081 CTACTTCTTG
*
180091 ATTTG ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA
180121 TTACTGCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:184741 original size:2 final size:2
Alignment explanation
Indices: 184734--184760 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
184724 TTTTTGAATT
184734 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
184761 TACATGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:189433 original size:29 final size:30
Alignment explanation
Indices: 189401--189458 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
189391 ATATTATCTT
* *
189401 TTTAATTAAGTA-TTTAAATTTTTTTTTGA
1 TTTAAATAAGTATTTTAAATTTTATTTTGA
*
189430 TTTAAATAAGTATTTTAACTTTTATTTTG
1 TTTAAATAAGTATTTTAAATTTTATTTTG
189459 TTATAAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.60
Consensus pattern (30 bp):
TTTAAATAAGTATTTTAAATTTTATTTTGA
Found at i:189620 original size:27 final size:27
Alignment explanation
Indices: 189569--189620 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
189559 TGGTTTTAAA
**
189569 TTCAAAAAAATTAAAAATTTTAAAAGC
1 TTCAAAAAAATTAAAAATTCCAAAAGC
189596 TTCAAAAAAATATAAAAA-TCCAAAA
1 TTCAAAAAAAT-TAAAAATTCCAAAA
189621 AATTAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.25
Consensus pattern (27 bp):
TTCAAAAAAATTAAAAATTCCAAAAGC
Found at i:189631 original size:10 final size:9
Alignment explanation
Indices: 189600--189778 Score: 115
Period size: 9 Copynumber: 19.2 Consensus size: 9
189590 AAAAGCTTCA
*
189600 AAAAAATAT
1 AAAAATTAT
*
189609 AAAAATCCA-
1 AAAAAT-TAT
189618 AAAAATTAAT
1 AAAAATT-AT
189628 AAAAATTAAT
1 AAAAATT-AT
189638 AAAAAATT-T
1 -AAAAATTAT
189647 AAAAATTAT
1 AAAAATTAT
189656 AAAAAATTA-
1 -AAAAATTAT
189665 AAAAATTCAAATT
1 AAAAATT---A-T
189678 CAAAAATTAT
1 -AAAAATTAT
189688 AAAAATCTAT
1 AAAAAT-TAT
189698 -AAAA-TAT
1 AAAAATTAT
189705 AAAAATATAAAT
1 AAAAAT-T--AT
189717 AAAAA-TA-
1 AAAAATTAT
*
189724 AAAAATTTT
1 AAAAATTAT
189733 AAAAATTA-
1 AAAAATTAT
189741 ACAAAATTAT
1 A-AAAATTAT
* *
189751 AAAAATAAA
1 AAAAATTAT
189760 AAAAATTAT
1 AAAAATTAT
189769 -AAAATTAT
1 AAAAATTAT
189777 AA
1 AA
189779 TTTTTGAATT
Statistics
Matches: 138, Mismatches: 9, Indels: 46
0.72 0.05 0.24
Matches are distributed among these distances:
7 8 0.06
8 29 0.21
9 52 0.38
10 26 0.19
11 9 0.07
12 7 0.05
14 7 0.05
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27
Consensus pattern (9 bp):
AAAAATTAT
Found at i:189657 original size:18 final size:18
Alignment explanation
Indices: 189617--189778 Score: 101
Period size: 17 Copynumber: 9.1 Consensus size: 18
189607 ATAAAAATCC
189617 AAAAAATTAATAAAAATTAAT
1 AAAAAATT--TAAAAATT-AT
189638 AAAAAATTTAAAAATTAT
1 AAAAAATTTAAAAATTAT
189656 AAAAAA-TTAAAAA--AT
1 AAAAAATTTAAAAATTAT
** *
189671 -TCAAATTCAAAAATTAT
1 AAAAAATTTAAAAATTAT
*
189688 -AAAAATCTATAAAA-TAT
1 AAAAAATTTA-AAAATTAT
* **
189705 -AAAAATATAAATAAAAAT
1 AAAAAATTTAAA-AATTAT
189723 AAAAAATTTTAAAAATTA-
1 AAAAAA-TTTAAAAATTAT
*
189741 ACAAAATTATAAAAA-TA-
1 AAAAAATT-TAAAAATTAT
*
189758 AAAAAAATTATAAAATTAT
1 AAAAAATTTA-AAAATTAT
189777 AA
1 AA
189779 TTTTTGAATT
Statistics
Matches: 114, Mismatches: 15, Indels: 26
0.74 0.10 0.17
Matches are distributed among these distances:
14 3 0.03
15 8 0.07
16 4 0.04
17 41 0.36
18 27 0.24
19 18 0.16
20 5 0.04
21 8 0.07
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAAAATTTAAAAATTAT
Found at i:189804 original size:9 final size:9
Alignment explanation
Indices: 189790--189994 Score: 85
Period size: 9 Copynumber: 23.2 Consensus size: 9
189780 TTTTGAATTA
189790 ATAATTTTT
1 ATAATTTTT
189799 ATAATTTTAT
1 ATAATTTT-T
* *
189809 TTTATTTTT
1 ATAATTTTT
189818 ATAATTTTT
1 ATAATTTTT
189827 A-AA-TTTT
1 ATAATTTTT
*
189834 ATATATTTTG
1 ATA-ATTTTT
*
189844 A-ATATTTTA
1 ATA-ATTTTT
**
189853 ATAATTTCA
1 ATAATTTTT
* *
189862 AAAAATTTT
1 ATAATTTTT
*
189871 A-AAATTTT
1 ATAATTTTT
* *
189879 A-AAATTTG
1 ATAATTTTT
*
189887 ATGGATTTTTT
1 AT--AATTTTT
* *
189898 GTAATTTTG
1 ATAATTTTT
189907 A-AATTTTT
1 ATAATTTTT
189915 ATAATTGATTT
1 ATAATT--TTT
*
189926 -TAAATTTT
1 ATAATTTTT
189934 ATAGATTTTCT
1 ATA-ATTTT-T
*
189945 ATAATTTTC
1 ATAATTTTT
189954 ATAA-TTTT
1 ATAATTTTT
189962 -T-ATTTTT
1 ATAATTTTT
189969 -T-ATTTTT
1 ATAATTTTT
189976 ATAATTTTT
1 ATAATTTTT
*
189985 -GAATTTTT
1 ATAATTTTT
189993 AT
1 AT
189995 TTTTATTTTA
Statistics
Matches: 152, Mismatches: 26, Indels: 36
0.71 0.12 0.17
Matches are distributed among these distances:
6 1 0.01
7 17 0.11
8 39 0.26
9 58 0.38
10 25 0.16
11 12 0.08
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (9 bp):
ATAATTTTT
Found at i:189806 original size:8 final size:8
Alignment explanation
Indices: 189773--190011 Score: 62
Period size: 8 Copynumber: 29.2 Consensus size: 8
189763 AATTATAAAA
189773 TTATAATT
1 TTATAATT
189781 TT-TGAA-T
1 TTAT-AATT
*
189788 TAATAATTT
1 TTATAA-TT
189797 TTATAA-T
1 TTATAATT
189804 TT-T-ATT
1 TTATAATT
189810 TTAT--TT
1 TTATAATT
189816 TTATAATT
1 TTATAATT
189824 TT-TAAATT
1 TTAT-AATT
189832 TTATATATT
1 TTATA-ATT
189841 TTGA-ATATT
1 TT-ATA-ATT
189850 TTAATAATT
1 TT-ATAATT
* *
189859 TCAAAAAATT
1 T--TATAATT
*
189869 TTAAAATT
1 TTATAATT
*
189877 TTAAAATT
1 TTATAATT
* *
189885 TGATGGATTTT
1 TTAT--A-ATT
*
189896 TTGTAATT
1 TTATAATT
189904 TTGA-AATTT
1 TT-ATAA-TT
189913 TTATAATT
1 TTATAATT
*
189921 GATTTTAAATT
1 --TTAT-AATT
189932 TTATAGATTT
1 TTATA-A-TT
189942 TCTATAATT
1 T-TATAATT
189951 TTCATAATT
1 TT-ATAATT
189960 TT-T-ATT
1 TTATAATT
* *
189966 TTTTATTT
1 TTATAATT
189974 TTATAATT
1 TTATAATT
189982 TT-TGAATT
1 TTAT-AATT
189990 TT-T-ATT
1 TTATAATT
189996 TT-T-ATT
1 TTATAATT
190002 TTATAATT
1 TTATAATT
190010 TT
1 TT
190012 CCTTTTTTTT
Statistics
Matches: 180, Mismatches: 18, Indels: 66
0.68 0.07 0.25
Matches are distributed among these distances:
5 1 0.01
6 26 0.14
7 14 0.08
8 65 0.36
9 46 0.26
10 16 0.09
11 12 0.07
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (8 bp):
TTATAATT
Found at i:189974 original size:22 final size:23
Alignment explanation
Indices: 189948--189997 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
189938 ATTTTCTATA
*
189948 ATTTTCATAATTTTT-ATTTTTT
1 ATTTTCATAATTTTTGAATTTTT
*
189970 ATTTTTATAATTTTTGAATTTTT
1 ATTTTCATAATTTTTGAATTTTT
189993 ATTTT
1 ATTTT
189998 TATTTTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 14 0.56
23 11 0.44
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
ATTTTCATAATTTTTGAATTTTT
Found at i:189984 original size:23 final size:22
Alignment explanation
Indices: 189948--190000 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
189938 ATTTTCTATA
* * *
189948 ATTTTCATAATTTTTATTTTTT
1 ATTTTTATAATTTTGAATTTTT
189970 ATTTTTATAATTTTTGAATTTTT
1 ATTTTTATAA-TTTTGAATTTTT
189993 ATTTTTAT
1 ATTTTTAT
190001 TTTATAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (22 bp):
ATTTTTATAATTTTGAATTTTT
Found at i:189992 original size:30 final size:29
Alignment explanation
Indices: 189938--190011 Score: 98
Period size: 28 Copynumber: 2.5 Consensus size: 29
189928 AATTTTATAG
189938 ATTTTCTATAATTTTCATAATTTTTATTTTTT
1 ATTTT-TATAATTTT-ATAATTTTTA-TTTTT
189970 ATTTTTATAATTTT-TGAATTTTTATTTTT
1 ATTTTTATAATTTTAT-AATTTTTATTTTT
189999 A-TTTTATAATTTT
1 ATTTTTATAATTTT
190012 CCTTTTTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
28 12 0.29
29 7 0.17
30 8 0.20
31 9 0.22
32 5 0.12
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (29 bp):
ATTTTTATAATTTTATAATTTTTATTTTT
Found at i:190345 original size:27 final size:27
Alignment explanation
Indices: 190249--190365 Score: 70
Period size: 25 Copynumber: 4.4 Consensus size: 27
190239 AAATATCACA
*
190249 TTATATAT-ATAATAATATA--AAAA-
1 TTATATATAATATTAATATATTAAAAT
*
190272 TAATATA-AATATATAAATATATTAAAAT
1 TTATATATAATAT-T-AATATATTAAAAT
*
190300 TCAGATAATATTACATATTAATATATTAAAAT
1 T--TAT-ATA-TA-ATATTAATATATTAAAAT
* *
190332 TTATATATAATATT-TTA-AATAAAAT
1 TTATATATAATATTAATATATTAAAAT
190357 TTATA-ATAA
1 TTATATATAA
190366 AAAAATTATA
Statistics
Matches: 76, Mismatches: 6, Indels: 23
0.72 0.06 0.22
Matches are distributed among these distances:
23 9 0.12
24 5 0.07
25 18 0.24
26 2 0.03
27 9 0.12
28 3 0.04
29 3 0.04
30 4 0.05
31 3 0.04
32 14 0.18
33 2 0.03
34 4 0.05
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.42
Consensus pattern (27 bp):
TTATATATAATATTAATATATTAAAAT
Found at i:190364 original size:12 final size:12
Alignment explanation
Indices: 190321--190367 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
190311 TACATATTAA
*
190321 TATATTAAAATT
1 TATAATAAAATT
*
190333 TATATATAATATT
1 TATA-ATAAAATT
190346 T-TAAATAAAATT
1 TAT-AATAAAATT
190358 TATAATAAAA
1 TATAATAAAA
190368 AAATTATATG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
12 20 0.69
13 9 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TATAATAAAATT
Found at i:190623 original size:2 final size:2
Alignment explanation
Indices: 190612--190683 Score: 76
Period size: 2 Copynumber: 37.0 Consensus size: 2
190602 TAAACGTAAT
* * * * *
190612 TA TA -A TA TA TA TA TA TA AA CA TA TA TA TT TA TA AA TA -A CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
190652 TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
190684 AATAATACAA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
1 2 0.03
2 56 0.97
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:190675 original size:39 final size:39
Alignment explanation
Indices: 190586--190688 Score: 129
Period size: 39 Copynumber: 2.6 Consensus size: 39
190576 AATTAAAATT
*
190586 TAAATATATAATATTT-TAAACGTAATTATAATATATATATA
1 TAAATATAT-ATATTTATAAA--TAAATATAATATATATATA
*
190627 TAAACATATATATTTATAAATAACATAT-ATATATATATA
1 TAAATATATATATTTATAAATAA-ATATAATATATATATA
*
190666 TAAATATATATATATATAAATAA
1 TAAATATATATATTTATAAATAA
190689 TACAAACATA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
39 35 0.62
40 9 0.16
41 12 0.21
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (39 bp):
TAAATATATATATTTATAAATAAATATAATATATATATA
Found at i:191314 original size:2 final size:2
Alignment explanation
Indices: 191309--191335 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
191299 AAAGCAGTGT
191309 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
191336 GATACTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:193319 original size:23 final size:24
Alignment explanation
Indices: 193293--193337 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
193283 TATATTTTAT
193293 TTTTTAAATATTT-TATA-AAATTA
1 TTTTT-AATATTTATATATAAATTA
*
193316 TTTTTTATATTTATATATAAAT
1 TTTTTAATATTTATATATAAAT
193338 ATAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTTTAATATTTATATATAAATTA
Found at i:193337 original size:24 final size:23
Alignment explanation
Indices: 193289--193337 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 23
193279 TAAATATATT
193289 TTATTTTTTAAATATTTTATAAAA
1 TTATTTTTT-AATATTTTATAAAA
193313 TTATTTTTT-ATATTTATATATAAA
1 TTATTTTTTAATATTT-TATA-AAA
193337 T
1 T
193338 ATAAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.26
23 4 0.17
24 13 0.57
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATTTTTTAATATTTTATAAAA
Found at i:193339 original size:6 final size:6
Alignment explanation
Indices: 193330--193369 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
193320 TTATATTTAT
193330 ATATAA ATATAA AT-TAA ATATAA ATATAAA ATATAA ATAT
1 ATATAA ATATAA ATATAA ATATAA ATAT-AA ATATAA ATAT
193370 TAAAAAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.16
6 21 0.66
7 6 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAA
Found at i:193349 original size:11 final size:12
Alignment explanation
Indices: 193330--193369 Score: 64
Period size: 13 Copynumber: 3.3 Consensus size: 12
193320 TTATATTTAT
193330 ATATAAATATAA
1 ATATAAATATAA
193342 AT-TAAATATAA
1 ATATAAATATAA
193353 ATATAAAATATAA
1 ATAT-AAATATAA
193366 ATAT
1 ATAT
193370 TAAAAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.42
12 3 0.12
13 12 0.46
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATATAAATATAA
Found at i:193352 original size:17 final size:19
Alignment explanation
Indices: 193330--193369 Score: 66
Period size: 17 Copynumber: 2.2 Consensus size: 19
193320 TTATATTTAT
193330 ATATAAATAT-AAAT-TAA
1 ATATAAATATAAAATATAA
193347 ATATAAATATAAAATATAA
1 ATATAAATATAAAATATAA
193366 ATAT
1 ATAT
193370 TAAAAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.48
18 4 0.19
19 7 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATATAAATATAAAATATAA
Found at i:193363 original size:13 final size:13
Alignment explanation
Indices: 193328--193374 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
193318 TTTTATATTT
193328 ATATATAAATATAA
1 ATATA-AAATATAA
193342 AT-T-AAATATAA
1 ATATAAAATATAA
193353 ATATAAAATATAA
1 ATATAAAATATAA
193366 ATATTAAAA
1 ATA-TAAAA
193375 AAAGAAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 10 0.33
12 1 0.03
13 12 0.40
14 7 0.23
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATATAAAATATAA
Found at i:193745 original size:35 final size:36
Alignment explanation
Indices: 193701--193770 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
193691 TAATTATAAT
193701 TATATTTAAAATATTATATATT-TAT-ATATTTTTTAA
1 TATATTTAAAAT-TT-TATATTATATAATATTTTTTAA
*
193737 TATA-TTAAAATTTTATTTTATATAATATTTTTTA
1 TATATTTAAAATTTTATATTATATAATATTTTTTA
193771 TTTATATCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
33 5 0.16
34 5 0.16
35 17 0.55
36 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (36 bp):
TATATTTAAAATTTTATATTATATAATATTTTTTAA
Found at i:193758 original size:18 final size:18
Alignment explanation
Indices: 193737--193798 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 18
193727 TATTTTTTAA
193737 TATATTAAAATTTTATTT
1 TATATTAAAATTTTATTT
* *
193755 TATA-TAATATTTTTTATT
1 TATATTAAAATTTTAT-TT
* * *
193773 TATATCATATTTTTATTTT
1 TATATTAAAATTTTA-TTT
193792 TATATTA
1 TATATTA
193799 TATTATAATT
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
17 9 0.27
18 10 0.30
19 13 0.39
20 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TATATTAAAATTTTATTT
Found at i:193759 original size:20 final size:20
Alignment explanation
Indices: 193714--193760 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
193704 ATTTAAAATA
* *
193714 TTATATATTTATATATTTTT
1 TTATATATTAAAATATTTTT
*
193734 TAATATATTAAAAT-TTTATT
1 TTATATATTAAAATATTT-TT
193754 TTATATA
1 TTATATA
193761 ATATTTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATATATTAAAATATTTTT
Found at i:193766 original size:17 final size:17
Alignment explanation
Indices: 193710--193822 Score: 77
Period size: 17 Copynumber: 6.5 Consensus size: 17
193700 TTATATTTAA
*
193710 AATATTATATATTTATAT
1 AATATTTTAT-TTTATAT
* * *
193728 -ATTTTTTAATATAT-T
1 AATATTTTATTTTATAT
*
193743 AAAATTTTATTTTATAT
1 AATATTTTATTTTATAT
*
193760 AATATTTTTTATTTATAT
1 AATATTTTAT-TTTATAT
*
193778 CATATTTTTATTTTTATAT
1 AATA-TTTTA-TTTTATAT
* * *
193797 TATATTATAATTTATAT
1 AATATTTTATTTTATAT
*
193814 TATATTTTA
1 AATATTTTA
193823 ATTATAATTT
Statistics
Matches: 74, Mismatches: 16, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
15 1 0.01
16 14 0.19
17 30 0.41
18 14 0.19
19 14 0.19
20 1 0.01
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (17 bp):
AATATTTTATTTTATAT
Found at i:193777 original size:36 final size:35
Alignment explanation
Indices: 193700--193815 Score: 101
Period size: 36 Copynumber: 3.2 Consensus size: 35
193690 TTAATTATAA
*
193700 TTATATTTAAAATATTATATATTTAT-ATATTTTTTA-
1 TTATA-TTAAAAT-TT-TATTTTTATAATATTTTTTAT
*
193736 ATATATTAAAATTTTATTTTATATAATATTTTTTAT
1 TTATATTAAAATTTTATTTT-TATAATATTTTTTAT
* * * * * *
193772 TTATATCATATTTTTATTTTTATATTATATTATAAT
1 TTATATTAAAATTTTATTTTTATAATAT-TTTTTAT
193808 TTATATTA
1 TTATATTA
193816 TATTTTAATT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
33 5 0.08
34 5 0.08
35 24 0.36
36 32 0.48
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (35 bp):
TTATATTAAAATTTTATTTTTATAATATTTTTTAT
Found at i:193810 original size:23 final size:23
Alignment explanation
Indices: 193757--193832 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
193747 TTTTATTTTA
*
193757 TATAATAT-TTTTTAT-TTATAT
1 TATAATTTATTTTTATATTATAT
* *
193778 CATATTTTTATTTTTATATTATAT
1 TATA-ATTTATTTTTATATTATAT
* *
193802 TATAATTTA-TATTATATTTTAAT
1 TATAATTTATTTTTATATTAT-AT
193825 TATAATTT
1 TATAATTT
193833 CGTATTATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
21 3 0.07
22 11 0.25
23 21 0.48
24 9 0.20
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (23 bp):
TATAATTTATTTTTATATTATAT
Found at i:193813 original size:12 final size:12
Alignment explanation
Indices: 193796--193832 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
193786 TATTTTTATA
193796 TTATATTATAAT
1 TTATATTATAAT
*
193808 TTATATTATATT
1 TTATATTATAAT
193820 TTA-ATTATAAT
1 TTATATTATAAT
193831 TT
1 TT
193833 CGTATTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATATTATAAT
Found at i:193824 original size:17 final size:17
Alignment explanation
Indices: 193720--193825 Score: 83
Period size: 18 Copynumber: 6.2 Consensus size: 17
193710 AATATTATAT
*
193720 ATTTATA-TATTTTTTA
1 ATTTATATTATATTTTA
*
193736 A--TATATTAAAATTTTA
1 ATTTATATT-ATATTTTA
* * *
193752 TTTTATATAATATTTTTT
1 ATTTATATTATA-TTTTA
*
193770 ATTTATATCATATTTTTA
1 ATTTATATTATA-TTTTA
* *
193788 TTTTTATATTATATTATA
1 -ATTTATATTATATTTTA
193806 ATTTATATTATATTTTA
1 ATTTATATTATATTTTA
193823 ATT
1 ATT
193826 ATAATTTCGT
Statistics
Matches: 70, Mismatches: 14, Indels: 11
0.74 0.15 0.12
Matches are distributed among these distances:
14 4 0.06
15 1 0.01
16 7 0.10
17 20 0.29
18 28 0.40
19 10 0.14
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTATATTATATTTTA
Found at i:199706 original size:21 final size:20
Alignment explanation
Indices: 199676--199714 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
199666 AATTCAAATA
199676 TTTTATTAT-ATTTATATTAT
1 TTTTATTATAATTT-TATTAT
199696 TTTTAATTATAATTTTATT
1 TTTT-ATTATAATTTTATT
199715 TAAAATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATTATAATTTTATTAT
Found at i:199760 original size:37 final size:36
Alignment explanation
Indices: 199719--199795 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 36
199709 TTTATTTAAA
199719 ATATTACAT-ATTTATAA-AAATTTTATACATAATATTT
1 ATATTACATAATTT-TAATAAA-TTTATACAT-ATATTT
* *
199756 ATATTATATAAATTTTAATACATTTATACATATATTT
1 ATATTACAT-AATTTTAATAAATTTATACATATATTT
199793 ATA
1 ATA
199796 AAATATTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
37 17 0.49
38 12 0.34
39 6 0.17
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.49
Consensus pattern (36 bp):
ATATTACATAATTTTAATAAATTTATACATATATTT
Found at i:199790 original size:31 final size:30
Alignment explanation
Indices: 199723--199806 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 30
199713 TTTAAAATAT
*
199723 TACATAT-TTATAAAAATTTT-ATACATAA
1 TACATATATTATATAAATTTTAATACATAA
** *
199751 TATTTATATTATATAAATTTTAATACATTTA
1 TACATATATTATATAAATTTTAATACA-TAA
*
199782 TACATATATT-TATAAAATATTAATA
1 TACATATATTATAT-AAATTTTAATA
199807 TTATCTTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 5 0.11
29 12 0.27
30 8 0.18
31 20 0.44
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (30 bp):
TACATATATTATATAAATTTTAATACATAA
Found at i:199829 original size:14 final size:14
Alignment explanation
Indices: 199807--199853 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
199797 AATATTAATA
*
199807 TTATCTTTTATTAT
1 TTATATTTTATTAT
199821 TTATATTTTATTTAT
1 TTATATTTTA-TTAT
*
199836 TT-TATTGTATTAT
1 TTATATTTTATTAT
199849 ATTAT
1 -TTAT
199854 TATAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 4 0.14
14 17 0.61
15 7 0.25
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (14 bp):
TTATATTTTATTAT
Found at i:200474 original size:23 final size:23
Alignment explanation
Indices: 200424--200474 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
200414 GGGTAAACAT
* *
200424 ATATATATATATATTTAAAATAA
1 ATATATAAATATAATTAAAATAA
*
200447 TTATATAAAT-TAATTAAAATAGA
1 ATATATAAATATAATTAAAATA-A
200470 ATATA
1 ATATA
200475 ATCACATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
ATATATAAATATAATTAAAATAA
Found at i:200660 original size:14 final size:15
Alignment explanation
Indices: 200639--200686 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 15
200629 ATTTTTATTA
200639 ATAT-ATATTTAAAT
1 ATATAATATTTAAAT
*
200653 ATA-AATA-TAAAAT
1 ATATAATATTTAAAT
200666 -TATAATACTTTAAAT
1 ATATAATA-TTTAAAT
200681 ATATAA
1 ATATAA
200687 AAAATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
12 2 0.07
13 9 0.33
14 6 0.22
15 5 0.19
16 5 0.19
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATAATATTTAAAT
Found at i:203127 original size:24 final size:23
Alignment explanation
Indices: 203102--203147 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
203092 CAATGGGAGT
203102 TTTA-AAAAATAATAATAAAAATG
1 TTTATAAAAAT-ATAATAAAAATG
*
203125 TTTATAAAGATATAATAAAAATG
1 TTTATAAAAATATAATAAAAATG
203148 GAATAATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (23 bp):
TTTATAAAAATATAATAAAAATG
Found at i:203979 original size:2 final size:2
Alignment explanation
Indices: 203972--204012 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
203962 CCTTAAAGCT
203972 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
204013 TCATTAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:205015 original size:11 final size:13
Alignment explanation
Indices: 204996--205065 Score: 56
Period size: 13 Copynumber: 5.4 Consensus size: 13
204986 ATAAATAATT
204996 ATATGATAAAAA-A
1 ATAT-ATAAAAATA
205009 ATA-ATAAAAATA
1 ATATATAAAAATA
*
205021 ATATATAAATAT-
1 ATATATAAAAATA
* *
205033 ATAAATAAATTATTA
1 ATATATAAA--AATA
*
205048 ATATATAAAAATT
1 ATATATAAAAATA
205061 ATATA
1 ATATA
205066 AATATAAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 7 0.16
12 12 0.27
13 17 0.38
14 1 0.02
15 8 0.18
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (13 bp):
ATATATAAAAATA
Found at i:205040 original size:19 final size:19
Alignment explanation
Indices: 205016--205071 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
205006 AAAATAATAA
205016 AAATAATATATAAATATAT
1 AAATAATATATAAATATAT
*
205035 AAATAA-ATTATTAATATAT
1 AAATAATA-TATAAATATAT
205054 AAA-AATTATATAAATATA
1 AAATAA-TATATAAATATA
205072 AAAACACATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 3 0.09
19 28 0.88
20 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATAATATATAAATATAT
Found at i:205059 original size:17 final size:18
Alignment explanation
Indices: 205008--205075 Score: 70
Period size: 17 Copynumber: 3.7 Consensus size: 18
204998 ATGATAAAAA
205008 AATA-ATAAAAATAATATAT
1 AATATATAAAAAT--TATAT
205027 AAATATATAAATAAATTAT-T
1 -AATATAT-AA-AAATTATAT
205047 AATATATAAAAATTATAT
1 AATATATAAAAATTATAT
205065 AA-ATATAAAAA
1 AATATATAAAAA
205076 CACATTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
17 16 0.36
18 5 0.11
19 7 0.16
20 5 0.11
21 5 0.11
22 2 0.05
23 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
AATATATAAAAATTATAT
Done.