Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold134
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 811437
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
File 5 of 5
Found at i:677444 original size:13 final size:14
Alignment explanation
Indices: 677413--677465 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
677403 TATAATTCAT
*
677413 ATATAAATATATAAA
1 ATATAAAT-TTTAAA
677428 ATATAAATTTTAAA
1 ATATAAATTTTAAA
677442 TATATTAAAATTTT-AA
1 -ATA-T-AAATTTTAAA
677458 ATATAAAT
1 ATATAAAT
677466 ATAATTTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 4 0.12
14 6 0.18
15 14 0.41
16 3 0.09
17 7 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATAAATTTTAAA
Found at i:677473 original size:17 final size:18
Alignment explanation
Indices: 677421--677486 Score: 64
Period size: 17 Copynumber: 3.6 Consensus size: 18
677411 ATATATAAAT
677421 ATATAAAATATAAATTTTAA
1 ATAT-AAATAT-AATTTTAA
* *
677441 ATAT-ATTAAAATTTTAA
1 ATATAAATATAATTTTAA
*
677458 ATATAAATATAA-TTTAT
1 ATATAAATATAATTTTAA
677475 ATATTAAATATA
1 ATA-TAAATATA
677487 TCATTTTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 19 0.49
18 16 0.41
20 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATAAATATAATTTTAA
Found at i:677498 original size:20 final size:18
Alignment explanation
Indices: 677441--677486 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
677431 TAAATTTTAA
677441 ATATATTAAA-AT--TTT
1 ATATATTAAATATAATTT
*
677456 AAATA-TAAATATAATTT
1 ATATATTAAATATAATTT
677473 ATATATTAAATATA
1 ATATATTAAATATA
677487 TCATTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 4 0.16
15 6 0.24
17 7 0.28
18 8 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATATTAAATATAATTT
Found at i:680256 original size:17 final size:18
Alignment explanation
Indices: 680204--680269 Score: 64
Period size: 17 Copynumber: 3.6 Consensus size: 18
680194 ATATACAAAT
680204 ATATATAATATAAATTTTAA
1 ATATA-AATAT-AATTTTAA
* *
680224 ATAT-ATTAAAATTTTAA
1 ATATAAATATAATTTTAA
*
680241 ATATAAATATAA-TTTAT
1 ATATAAATATAATTTTAA
680258 ATATTAAATATA
1 ATA-TAAATATA
680270 TCATTTATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 19 0.49
18 16 0.41
20 4 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATAAATATAATTTTAA
Found at i:680265 original size:18 final size:18
Alignment explanation
Indices: 680224--680281 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
680214 TAAATTTTAA
680224 ATATATTAAA-AT--TTT
1 ATATATTAAATATAATTT
*
680239 AAATA-TAAATATAATTT
1 ATATATTAAATATAATTT
680256 ATATATTAAATATATCATTT
1 ATATATTAAATATA--ATTT
680276 ATATAT
1 ATATAT
680282 ATATATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 4 0.11
15 6 0.17
17 7 0.20
18 8 0.23
20 10 0.29
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATATTAAATATAATTT
Found at i:680270 original size:2 final size:2
Alignment explanation
Indices: 680241--680295 Score: 51
Period size: 2 Copynumber: 28.0 Consensus size: 2
680231 AAAATTTTAA
* * * *
680241 AT AT AA AT AT A- AT TT AT AT AT -T AA AT AT AT CAT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
680282 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
680296 TTCTTTTCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
1 2 0.05
2 38 0.90
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:680275 original size:20 final size:20
Alignment explanation
Indices: 680241--680293 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
680231 AAAATTTTAA
680241 ATATAAATATA-ATTTATAT
1 ATATAAATATATATTTATAT
680260 AT-TAAATATATCATTTATAT
1 ATATAAATATAT-ATTTATAT
*
680280 ATATATATATATAT
1 ATATAAATATATAT
680294 ATTTCTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.27
19 2 0.07
20 12 0.40
21 8 0.27
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATAAATATATATTTATAT
Found at i:680840 original size:29 final size:29
Alignment explanation
Indices: 680802--680858 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
680792 TTATGAATAT
* *
680802 AATATAATAAATATTTAAA-ATAGATATAA
1 AATATAATAAA-ATATAAATATAAATATAA
*
680831 AATATGATAAAATATAAATATAAATATA
1 AATATAATAAAATATAAATATAAATATA
680859 TTAAAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (29 bp):
AATATAATAAAATATAAATATAAATATAA
Found at i:680845 original size:44 final size:44
Alignment explanation
Indices: 680762--680865 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 44
680752 TGGGTGTTTG
* * * *
680762 TAATAAAT-TTTGATATGATATAATAATATGTTATGAATATAATA
1 TAATAAATATTTAAAATGATATAATAATATGATATAAATATAA-A
680806 TAATAAATATTTAAAATAGATATAA-AATATGATA-AAATATAAA
1 TAATAAATATTTAAAAT-GATATAATAATATGATATAAATATAAA
680849 T-ATAAATATATTAAAAT
1 TAATAAATAT-TTAAAAT
680866 TTATATTATT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
42 8 0.15
43 9 0.17
44 15 0.28
45 14 0.26
46 7 0.13
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (44 bp):
TAATAAATATTTAAAATGATATAATAATATGATATAAATATAAA
Found at i:680863 original size:22 final size:22
Alignment explanation
Indices: 680797--680865 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
680787 ATATGTTATG
680797 AATATAATATAATAAATAT-TTAA
1 AATATAA-AT-ATAAATATATTAA
* *
680820 AATAGATATA-AAATATGA-TAA
1 AATATAAATATAAATAT-ATTAA
680841 AATATAAATATAAATATATTAA
1 AATATAAATATAAATATATTAA
680863 AAT
1 AAT
680866 TTATATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
20 6 0.16
21 13 0.34
22 14 0.37
23 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (22 bp):
AATATAAATATAAATATATTAA
Found at i:681606 original size:18 final size:18
Alignment explanation
Indices: 681579--681617 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
681569 TTTCTCTATC
* *
681579 ACTCTTCACTTTTTAAAA
1 ACTCTCCACTTCTTAAAA
681597 ACTCTCCACTTCTTAAAA
1 ACTCTCCACTTCTTAAAA
681615 ACT
1 ACT
681618 ATTTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.38
Consensus pattern (18 bp):
ACTCTCCACTTCTTAAAA
Found at i:682247 original size:216 final size:216
Alignment explanation
Indices: 681808--684809 Score: 5687
Period size: 216 Copynumber: 13.9 Consensus size: 216
681798 TTAATAATAT
* * *
681808 TAATTTAATTGATGAATTTATAAAAAAGATAAATAAATTCATAATATCAATTATAAGATATTAAT
1 TAATTTAATTGATGAATTTATAAAAAGGATAAA-AAATTCATAATATCAACTATAAGATATGAAT
681873 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTT-AAAAAATTACCTATTAG
65 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAG
681936 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
130 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
682001 AAATATAATATCAACTATAAGA
195 AAATATAATATCAACTATAAGA
682023 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
682088 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
682153 ATGAAGTTAAACAA-TTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAAATTAATAAAT
131 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTT-AAAAAATTAATAAAT
682217 AAATATAATATCAACTATAAGA
195 AAATATAATATCAACTATAAGA
682239 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
682304 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTT-AAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
682367 ATGAAGTTAAAACAA-TTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAAATTAATAAA
131 ATGAAGTT-AAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTT-AAAAAATTAATAAA
682431 TAAATATAATATCAACTATAAGA
194 TAAATATAATATCAACTATAAGA
682454 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
682519 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
682584 ATGAAGTTAAACAA-TTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
131 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
682648 AATATAATATCAACTATAAGA
196 AATATAATATCAACTATAAGA
682669 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAAATTCATAATATCAACTATAAGATATGAAT
1 TAATTTAATTGATGAATTTATAAAAAGGAT-AAAAAATTCATAATATCAACTATAAGATATGAAT
682734 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAG
65 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAG
682799 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
130 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
682864 AAATATAATATCAACTATAAGA
195 AAATATAATATCAACTATAAGA
682886 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
682951 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTTAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
683015 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
131 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
683080 AATATAATATCAACTATAAGA
196 AATATAATATCAACTATAAGA
683101 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
*
683166 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTTAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
*
683231 ATGAAGTTAAACAATTTTTTAAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
131 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
683296 AATATAATATCAACTATAAGA
196 AATATAATATCAACTATAAGA
683317 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
683382 TATTTTATATTTTTTGTATAA-TTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
683446 ATGAAGTTAAACAA-TTTTTTAAAGAGATTAAACAAGAAATATATTTTT-AAAAATTAATAAATA
131 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
683509 AATATAATATCAACTATAAGA
196 AATATAATATCAACTATAAGA
683530 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
683595 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
683660 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
131 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
683725 AATATAATATCAACTATAAGA
196 AATATAATATCAACTATAAGA
683746 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
*
683811 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTAAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
683876 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTT-AAAAATTAATAAATA
131 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
683940 AATATAATATCAACTATAAGA
196 AATATAATATCAACTATAAGA
683961 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
684026 TATTTTATATTTTTTGTAT--TTTTTTTTGAAATTATTGATTTTTTTAAAAAAAATTACCTATTA
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTTT-AAAAAAATTACCTATTA
684089 GGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAA
129 GGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAA
684154 TAAATATAATATCAACTATAAGA
194 TAAATATAATATCAACTATAAGA
684177 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
*
684242 TATTTTATATTTTTTGTATATTTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
*
684307 ATGAAGTTAAACAATTTTTTTTAAAGAGATTAAACAAGAAATATATTTTTTAAAAATTAATAAAT
131 ATGAAGTTAAACAA-TTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
684372 AAATATAATATCAACTATAAGA
195 AAATATAATATCAACTATAAGA
684394 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
*
684459 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTTAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
684524 ATGAAGTTAAACAA-TTTTTTAAAGGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
131 ATGAAGTTAAACAATTTTTTTAAA-GAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
684588 AAATATAATATCAACTATAAGA
195 AAATATAATATCAACTATAAGA
684610 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
*
684675 TATTTTATATTTTTTGTAT-A-TTTTTTTGAAATTATTAATTTTTTAAAAAAAATTACCTATTAG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTT-AAAAAAATTACCTATTAG
* *
684738 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACATGAAATATATTTTTAAAAAATTGATAAAT
130 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
684803 AAATATA
195 AAATATA
684810 TAAATCAAAA
Statistics
Matches: 2749, Mismatches: 17, Indels: 42
0.98 0.01 0.01
Matches are distributed among these distances:
213 141 0.05
214 214 0.08
215 906 0.33
216 1123 0.41
217 346 0.13
218 19 0.01
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (216 bp):
TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
AATATAATATCAACTATAAGA
Found at i:682611 original size:431 final size:431
Alignment explanation
Indices: 681808--684809 Score: 5674
Period size: 431 Copynumber: 7.0 Consensus size: 431
681798 TTAATAATAT
* * *
681808 TAATTTAATTGATGAATTTATAAAAAAGATAAATAAATTCATAATATCAATTATAAGATATTAAT
1 TAATTTAATTGATGAATTTATAAAAAGGATAAA-AAATTCATAATATCAACTATAAGATATGAAT
681873 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTTAAAAAATTACCTATTAGG
65 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAATTACCTATTAGG
681937 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
130 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
682002 AATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAAT
195 AATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAAT
682067 ATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTT
260 ATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTT
682132 TTAAAAAAATTACCTATTAGGATGAAGTTAAACAA-TTTTTTAAAGAGATTAAACAAGAAATATA
325 TTAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATA
682196 TTTTTAAAAAAATTAATAAATAAATATAATATCAACTATAAGA
390 TTTTT-AAAAAATTAATAAATAAATATAATATCAACTATAAGA
682239 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
682304 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTTAAAAAATTACCTATTAGGA
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAATTACCTATTAGGA
682368 TGAAGTTAAAACAA-TTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAAATTAATAAAT
131 TGAAGTT-AAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTT-AAAAAATTAATAAAT
682432 AAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAA
194 AAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAA
682497 TATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTT
259 TATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTT
682562 TTTAAAAAAATTACCTATTAGGATGAAGTTAAACAA-TTTTTTAAAGAGATTAAACAAGAAATAT
324 TTTAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATAT
682626 ATTTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
389 ATTTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
682669 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAAATTCATAATATCAACTATAAGATATGAAT
1 TAATTTAATTGATGAATTTATAAAAAGGAT-AAAAAATTCATAATATCAACTATAAGATATGAAT
682734 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAG
65 ATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTT-AAAAAATTACCTATTAG
682799 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
129 GATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
682864 AAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAA
194 AAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAA
682929 TATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TT
259 TATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTT
682993 TTTAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATAT
324 TTTAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATAT
683058 ATTTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
389 ATTTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
683101 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
683166 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTTAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTTTAAAAAATTACCTATTAGG
*
683231 ATGAAGTTAAACAATTTTTTAAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
130 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
683296 AATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAAT
195 AATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAAT
683361 ATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAA-TTTTTTTGAAATTATTGATTTT
260 ATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTT
683425 TTAAAAAAATTACCTATTAGGATGAAGTTAAACAA-TTTTTTAAAGAGATTAAACAAGAAATATA
325 TTAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATA
683489 TTTTT-AAAAATTAATAAATAAATATAATATCAACTATAAGA
390 TTTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
683530 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
683595 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTT-AAAAAATTACCTATTAGG
683660 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
130 ATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATA
683725 AATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAAT
195 AATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAAT
683790 ATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTT
260 ATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTT
*
683855 TAAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATA
325 TTAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATA
683920 TTTTT-AAAAATTAATAAATAAATATAATATCAACTATAAGA
390 TTTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
683961 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
684026 TATTTTATATTTTTTGTAT--TTTTTTTTGAAATTATTGATTTTTTTAAAAAAAATTACCTATTA
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTTT--AAAAAATTACCTATTA
684089 GGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAA
128 GGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAA
684154 TAAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATA
193 TAAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATA
*
684219 ATATCAACTATAAGATATGAATATATTTTATATTTTTTGTATATTTTTTTTTGAAATTATTGATT
258 ATATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATT
684284 TTTTAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTTAAAGAGATTAAACAAGAAAT
323 TTTTAAAAAAATTACCTATTAGGATGAAGTTAAACAA-TTTTTTTAAAGAGATTAAACAAGAAAT
*
684349 ATATTTTTTAAAAATTAATAAATAAATATAATATCAACTATAAGA
387 ATATTTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
684394 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
1 TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
684459 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTTAAAAAATTACCTATTAGG
66 TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGA-TTTTTTAAAAAATTACCTATTAGG
684524 ATGAAGTTAAACAA-TTTTTTAAAGGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
130 ATGAAGTTAAACAATTTTTTTAAA-GAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAAT
684588 AAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAA
194 AAATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAA
*
684653 TATCAACTATAAGATATGAATATATTTTATATTTTTTGTAT-A-TTTTTTTGAAATTATTAATTT
259 TATCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTT
*
684716 TTTAAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACATGAAATA
324 TTT-AAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATA
*
684781 TATTTTTAAAAAATTGATAAATAAATATA
388 TATTTTTAAAAAATTAATAAATAAATATA
684810 TAAATCAAAA
Statistics
Matches: 2538, Mismatches: 13, Indels: 40
0.98 0.01 0.02
Matches are distributed among these distances:
428 6 0.00
429 349 0.14
430 316 0.12
431 1146 0.45
432 337 0.13
433 358 0.14
435 26 0.01
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (431 bp):
TAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATATCAACTATAAGATATGAATA
TATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTTTAAAAAATTACCTATTAGGA
TGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATATTTTTAAAAAATTAATAAATAA
ATATAATATCAACTATAAGATAATTTAATTGATGAATTTATAAAAAGGATAAAAAATTCATAATA
TCAACTATAAGATATGAATATATTTTATATTTTTTGTATAATTTTTTTTGAAATTATTGATTTTT
TAAAAAAATTACCTATTAGGATGAAGTTAAACAATTTTTTTAAAGAGATTAAACAAGAAATATAT
TTTTAAAAAATTAATAAATAAATATAATATCAACTATAAGA
Found at i:685461 original size:2 final size:2
Alignment explanation
Indices: 685444--685489 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
685434 TCATTCTTTA
* *
685444 AT AT -T AT AT AT GT AT AT AT AA AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
685485 A- AT AT
1 AT AT AT
685490 TCTCCATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:686475 original size:12 final size:13
Alignment explanation
Indices: 686458--686500 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
686448 GCATTTCATC
686458 TATAAATA-TAAA
1 TATAAATATTAAA
686470 TATAAATATTAAA
1 TATAAATATTAAA
* *
686483 TATATCATATTAAT
1 TATA-AATATTAAA
686497 TATA
1 TATA
686501 TTTATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 8 0.30
13 8 0.30
14 11 0.41
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (13 bp):
TATAAATATTAAA
Found at i:686507 original size:6 final size:6
Alignment explanation
Indices: 686496--686541 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
686486 ATCATATTAA
*
686496 TTATAT TTATAT ATATAT ATT-TA- TTATAT TTATTAT TTATAT TTAT
1 TTATAT TTATAT TTATAT -TTATAT TTATAT TTA-TAT TTATAT TTAT
686542 TCTTTTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
4 2 0.06
5 2 0.06
6 23 0.68
7 7 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TTATAT
Found at i:686529 original size:13 final size:13
Alignment explanation
Indices: 686490--686542 Score: 56
Period size: 13 Copynumber: 4.0 Consensus size: 13
686480 AAATATATCA
686490 TATTA-ATTATATT
1 TATTATATT-TATT
*
686503 TATATATATATATT
1 TAT-TATATTTATT
686517 TATTATATTTA-T
1 TATTATATTTATT
686529 TATTTATATTTATT
1 TA-TTATATTTATT
686543 CTTTTTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
12 3 0.09
13 19 0.56
14 10 0.29
15 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTATATTTATT
Found at i:686549 original size:22 final size:23
Alignment explanation
Indices: 686482--686542 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
686472 TAAATATTAA
*
686482 ATATATCATATTAATTATATTTAT
1 ATATAT-ATATTTATTATATTTAT
686506 ATATATATATTTATTATATTTAT
1 ATATATATATTTATTATATTTAT
*
686529 -TATTTATATTTATT
1 ATATATATATTTATT
686543 CTTTTTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.37
23 16 0.46
24 6 0.17
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
ATATATATATTTATTATATTTAT
Found at i:686815 original size:32 final size:29
Alignment explanation
Indices: 686762--686820 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 29
686752 TAACATAATA
*
686762 TTATAATTATTATTTTAAAATTTTAATTT
1 TTATAATTATTATTTTAAAATTATAATTT
*
686791 TTATTATTATTTATTTTAATAAATTATAAT
1 TTATAATTA-TTATTTT-A-AAATTATAAT
686821 AATATTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 7 0.28
31 1 0.04
32 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
TTATAATTATTATTTTAAAATTATAATTT
Found at i:686829 original size:35 final size:34
Alignment explanation
Indices: 686756--686869 Score: 100
Period size: 35 Copynumber: 3.5 Consensus size: 34
686746 TAATAATAAC
*
686756 ATAATA-TTATAATTA-TTATTTT-AAAATT-T-
1 ATAATATTTATTATTATTTATTTTAAAAATTATA
*
686785 -TAATTTTTATTATTATTTATTTTAATAAATTATA
1 ATAATATTTATTATTATTTATTTTAA-AAATTATA
*
686819 ATAATATTTATTA-TATCTGTAATTTAAATAATTATA
1 ATAATATTTATTATTAT-T-TATTTTAAA-AATTATA
*
686855 AT-ATATTTACTATTA
1 ATAATATTTATTATTA
686870 CAATTTAAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
28 4 0.06
29 8 0.12
30 7 0.10
31 1 0.01
32 5 0.07
33 1 0.01
34 3 0.04
35 22 0.32
36 18 0.26
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (34 bp):
ATAATATTTATTATTATTTATTTTAAAAATTATA
Found at i:687541 original size:2 final size:2
Alignment explanation
Indices: 687534--687563 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
687524 AACTTGTGTT
687534 TA TA TA TA TA TA TA TA TA TA TA TA GTA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA T
687564 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:689417 original size:15 final size:16
Alignment explanation
Indices: 689392--689422 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
689382 TTTATATCTT
689392 TTATATAATTTTTTAA
1 TTATATAATTTTTTAA
689408 TTAT-TAATTTTTTAA
1 TTATATAATTTTTTAA
689423 AAAACTACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATATAATTTTTTAA
Found at i:690356 original size:18 final size:17
Alignment explanation
Indices: 690315--690361 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
690305 TAAATTTTAA
690315 ATATATTAAA-AT-TTT
1 ATATATTAAATATATTT
*
690330 AAATA-TAAATATAATTT
1 ATATATTAAATAT-ATTT
690347 ATATATTAAATATAT
1 ATATATTAAATATAT
690362 CATATTTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 4 0.15
15 6 0.23
17 9 0.35
18 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTAAATATATTT
Found at i:690679 original size:25 final size:25
Alignment explanation
Indices: 690646--690708 Score: 119
Period size: 25 Copynumber: 2.6 Consensus size: 25
690636 TTTTTATTAT
690646 TAATA-TTATTATAATCAATTATAA
1 TAATATTTATTATAATCAATTATAA
690670 TAATATTTATTATAATCAATTATAA
1 TAATATTTATTATAATCAATTATAA
690695 TAATATTTATTATA
1 TAATATTTATTATA
690709 TTCATAATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 5 0.13
25 33 0.87
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (25 bp):
TAATATTTATTATAATCAATTATAA
Found at i:690935 original size:16 final size:16
Alignment explanation
Indices: 690914--690983 Score: 63
Period size: 16 Copynumber: 4.2 Consensus size: 16
690904 ATATGATATG
690914 ATAATATGATATAAAT
1 ATAATATGATATAAAT
690930 ATAATAT-A-ATAAAT
1 ATAATATGATATAAAT
690944 ATTTAAAATATGATATAAAAT
1 A--T--AATATGATAT-AAAT
**
690965 ATAATAAAATATAAAT
1 ATAATATGATATAAAT
690981 ATA
1 ATA
690984 TAAATATATC
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
14 7 0.16
15 1 0.02
16 15 0.33
17 8 0.18
18 5 0.11
19 2 0.04
20 2 0.04
21 5 0.11
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAATATGATATAAAT
Found at i:690943 original size:14 final size:14
Alignment explanation
Indices: 690914--690991 Score: 52
Period size: 14 Copynumber: 5.2 Consensus size: 14
690904 ATATGATATG
690914 ATAATATGATATAAAT
1 ATAATAT-A-ATAAAT
690930 ATAATATAATAAAT
1 ATAATATAATAAAT
* *
690944 ATTTAAAAT-ATGATAT
1 A--TAATATAAT-AAAT
*
690960 AAAATATAATAAAAT
1 ATAATATAAT-AAAT
690975 ATAA-ATATATAAAT
1 ATAATATA-ATAAAT
690989 ATA
1 ATA
690992 TCAAAATTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
14 21 0.42
15 13 0.26
16 16 0.32
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
ATAATATAATAAAT
Found at i:690998 original size:10 final size:8
Alignment explanation
Indices: 690922--690992 Score: 64
Period size: 7 Copynumber: 9.5 Consensus size: 8
690912 TGATAATATG
690922 ATATAAAT
1 ATATAAAT
*
690930 ATA-ATAT
1 ATATAAAT
690937 A-ATAAAT
1 ATATAAAT
*
690944 ATTTAAA-
1 ATATAAAT
*
690951 ATAT-GAT
1 ATATAAAT
690958 ATA-AAAT
1 ATATAAAT
690965 ATAATAAA-
1 AT-ATAAAT
690973 ATATAAAT
1 ATATAAAT
690981 ATATAAAT
1 ATATAAAT
690989 ATAT
1 ATAT
690993 CAAAATTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
6 2 0.04
7 23 0.46
8 22 0.44
9 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (8 bp):
ATATAAAT
Found at i:690998 original size:18 final size:16
Alignment explanation
Indices: 690956--691003 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
690946 TTAAAATATG
690956 ATATAAAATATAATAAA
1 ATATAAAATAT-ATAAA
690973 ATAT-AAATATATAAA
1 ATATAAAATATATAAA
*
690988 TATATCAAAATTTATA
1 -ATAT-AAAATATATA
691004 TTATTTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 5 0.19
16 10 0.37
17 4 0.15
18 8 0.30
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAAAATATATAAA
Found at i:691632 original size:9 final size:9
Alignment explanation
Indices: 691599--691656 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
691589 TAATTTAATC
*
691599 ATTAAAATT
1 ATTAAAAAT
*
691608 ATTAAAAAA
1 ATTAAAAAT
691617 ACTTTAAAAAT
1 A--TTAAAAAT
*
691628 ATTAATAAT
1 ATTAAAAAT
*
691637 AATAAAAAT
1 ATTAAAAAT
691646 -TTAAAAAT
1 ATTAAAAAT
691654 ATT
1 ATT
691657 TATATCTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
8 7 0.18
9 24 0.62
11 8 0.21
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:694811 original size:33 final size:32
Alignment explanation
Indices: 694767--694837 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
694757 AATAATACAA
694767 ATATAACATAAA-TATATAA-GAATATTAAAATTC
1 ATATAACATAAATTAT-TAATG--TATTAAAATTC
* *
694800 ATATAATATAAATTATTAATGTATTAAAATTT
1 ATATAACATAAATTATTAATGTATTAAAATTC
694832 ATATAA
1 ATATAA
694838 ATATTTAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 16 0.47
33 14 0.41
34 4 0.12
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (32 bp):
ATATAACATAAATTATTAATGTATTAAAATTC
Found at i:694842 original size:18 final size:18
Alignment explanation
Indices: 694787--694842 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
694777 AATATATAAG
*
694787 AATATTAAAATTCATAT-
1 AATATTAAAATTTATATA
694804 AATA-T-AAA-TTAT-TA
1 AATATTAAAATTTATATA
*
694818 ATGTATTAAAATTTATATA
1 A-ATATTAAAATTTATATA
694837 AATATT
1 AATATT
694843 TAACACTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 11
0.68 0.07 0.25
Matches are distributed among these distances:
13 1 0.03
14 4 0.13
15 5 0.17
16 2 0.07
17 7 0.23
18 8 0.27
19 3 0.10
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
AATATTAAAATTTATATA
Found at i:701143 original size:26 final size:25
Alignment explanation
Indices: 701093--701143 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
701083 GTACAAAAGT
* * *
701093 AAAATAAATATAATTTTATTAATAA
1 AAAATAAATAAAATATTATAAATAA
701118 AAAATAAATTAAAATATTATAAATAA
1 AAAATAAA-TAAAATATTATAAATAA
701144 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
AAAATAAATAAAATATTATAAATAA
Found at i:701160 original size:18 final size:19
Alignment explanation
Indices: 701119--701167 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
701109 TATTAATAAA
*
701119 AAATAAATTAAAATATTAT
1 AAATAAATTAAAATAATAT
*
701138 AAATAATTTAAAA-AATAT
1 AAATAAATTAAAATAATAT
701156 GAATATAAATTA
1 -AA-ATAAATTA
701168 TTAATAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 4 0.16
19 14 0.56
20 7 0.28
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAATAAATTAAAATAATAT
Found at i:701217 original size:27 final size:27
Alignment explanation
Indices: 701149--701206 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
701139 AATAATTTAA
*
701149 AAAATATGAATATAAATTATTAATAAATT
1 AAAATAT--ATATAAATTATTAAAAAATT
*
701178 AAAATTTATATAAATT-TTAAAAAATT
1 AAAATATATATAAATTATTAAAAAATT
701204 AAA
1 AAA
701207 CATAATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 12 0.44
27 9 0.33
29 6 0.22
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (27 bp):
AAAATATATATAAATTATTAAAAAATT
Found at i:701225 original size:50 final size:50
Alignment explanation
Indices: 701120--701215 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 50
701110 ATTAATAAAA
* * *
701120 AATAAATTAAAATATTATAAATAATTTAAAAAATATGAATATAAATTATT
1 AATAAATTAAAATATTATAAATAATTTAAAAAATATAAACATAAATTATC
*
701170 AATAAATTAAAAT-TTATATAA-ATTTTAAAAAAT-TAAACAT-AATTAT
1 AATAAATTAAAATATTATA-AATAATTTAAAAAATATAAACATAAATTAT
701216 AACAGATAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 6 0.14
48 5 0.12
49 16 0.38
50 15 0.36
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (50 bp):
AATAAATTAAAATATTATAAATAATTTAAAAAATATAAACATAAATTATC
Found at i:706285 original size:18 final size:18
Alignment explanation
Indices: 706262--706299 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
706252 AATGTAAGTA
706262 TATTTCAAAGTTAATATC
1 TATTTCAAAGTTAATATC
* *
706280 TATTTCAATGTTACTATC
1 TATTTCAAAGTTAATATC
706298 TA
1 TA
706300 CTTCCCATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.47
Consensus pattern (18 bp):
TATTTCAAAGTTAATATC
Found at i:707563 original size:12 final size:12
Alignment explanation
Indices: 707546--707594 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
707536 AAAATTTTTA
707546 ATATTAATATTT
1 ATATTAATATTT
*
707558 ATATTATTATTT
1 ATATTAATATTT
*
707570 -TTTTAATA-TT
1 ATATTAATATTT
707580 ATATTTAA-ATTT
1 ATA-TTAATATTT
707592 ATA
1 ATA
707595 AAATTTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
10 2 0.07
11 8 0.27
12 20 0.67
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
ATATTAATATTT
Found at i:707565 original size:15 final size:15
Alignment explanation
Indices: 707522--707566 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
707512 GATATGTTAT
707522 AATTTATATTATATAA
1 AATTTATATTAT-TAA
* *
707538 AATTTTTAATATTAA
1 AATTTATATTATTAA
*
707553 TATTTATATTATTA
1 AATTTATATTATTA
707567 TTTTTTTAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AATTTATATTATTAA
Found at i:708167 original size:12 final size:12
Alignment explanation
Indices: 708150--708174 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
708140 TGTATAAATG
708150 ATTTTTTAATTA
1 ATTTTTTAATTA
708162 ATTTTTTAATTA
1 ATTTTTTAATTA
708174 A
1 A
708175 ATATTAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTTTTTAATTA
Found at i:708318 original size:19 final size:18
Alignment explanation
Indices: 708269--708318 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 18
708259 AATCTAATAT
*
708269 AATATT-TAATATATAAA
1 AATATTATATTATATAAA
708286 AA-ATTATGATTTATGATAAA
1 AATATTAT-A-TTAT-ATAAA
708306 AATATTATATTAT
1 AATATTATATTAT
708319 TTTTTAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
16 3 0.11
17 3 0.11
18 1 0.04
19 7 0.26
20 8 0.30
21 5 0.19
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (18 bp):
AATATTATATTATATAAA
Found at i:708374 original size:11 final size:11
Alignment explanation
Indices: 708347--708376 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
708337 TTAAATTAAA
708347 TATTTAATATT
1 TATTTAATATT
708358 TA-TTAATATT
1 TATTTAATATT
708368 TATTTAATA
1 TATTTAATA
708377 ATATTAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTAATATT
Found at i:712212 original size:315 final size:314
Alignment explanation
Indices: 711641--712261 Score: 1064
Period size: 315 Copynumber: 2.0 Consensus size: 314
711631 TATCTGCCTC
** * *
711641 TGTTTTTCTTGCTTGAATGTTGCTTCCTATATTATTTGGACTCGGACATGAGTTTAAGACACGAG
1 TGTTTTTCTTGCTTGAATGTTGCTTCCTATATTATTTGGACTCAAACATGAGTTTAAGACACAAA
* * ** *
711706 TATGTTTGATTTTTTCAAGATTTCCATCTATTTAGAGGATTTTTGATGGATCATATCTCTGTAGC
66 TATGTATGATTTTTTCAAGACTTCCATCTATTTAGAGGATTTTTGAAAGATCATATCTCTGTAAC
* * *
711771 TATTTTAGATATGCATTGGATATAAATATTTTTAAATAATAAAAGGTTGGAGCAACGGTGGCTTC
131 TATTTTAGATATGCATCGGATATAAATATTTTTAAAAAATAAAAAGTTGGAGCAACGGTGGCTTC
*
711836 TCCTGCTAATTTTACACCATTGGTCTTTGTTGAAGGTAGGTTTAGGACTTTTAGAATTTTCTATA
196 TCCTGCTAATCTTACACCATTGGTCTTTGTTGAAGGTAGGTTTAGGACTTTTAGAATTTTCTATA
*
711901 TTTTAAAGTAATTAGACCTAACAATTTTGGACTTGATTAATAAACACCATATGG
261 TTTTAAAGTAATTAGACCTAACAATTTTGGACATGATTAATAAACACCATATGG
711955 TGTTTTTCTTGCTTGAATGTTGCTTCCTATATTATTTGGACTCAAACATGAGTTTAAGACACAAA
1 TGTTTTTCTTGCTTGAATGTTGCTTCCTATATTATTTGGACTCAAACATGAGTTTAAGACACAAA
*
712020 TATGTATGATTTTTTCAAGACTTCCATCTATTTAGAGGGTTTTTGAAAGATCATATC-CTTGTAA
66 TATGTATGATTTTTTCAAGACTTCCATCTATTTAGAGGATTTTTGAAAGATCATATCTC-TGTAA
712084 CTATGTTTAGATATGCATCGGATATAAATATTTTTAAAAAATAAAAAGTTGGAGCAACGGTGGCT
130 CTAT-TTTAGATATGCATCGGATATAAATATTTTTAAAAAATAAAAAGTTGGAGCAACGGTGGCT
*
712149 TCTCCTGCTAATCTTACACCTTTGGTCTTTGTTGAAGGTAGGTTTAGGACTTTTAGAATTTTCTA
194 TCTCCTGCTAATCTTACACCATTGGTCTTTGTTGAAGGTAGGTTTAGGACTTTTAGAATTTTCTA
*
712214 TATTTTAAAGTAATTAGACTTAACAATTTTGGACATGATTAATAAACA
259 TATTTTAAAGTAATTAGACCTAACAATTTTGGACATGATTAATAAACA
712262 TAATATGAAC
Statistics
Matches: 288, Mismatches: 17, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
313 1 0.00
314 121 0.42
315 166 0.58
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (314 bp):
TGTTTTTCTTGCTTGAATGTTGCTTCCTATATTATTTGGACTCAAACATGAGTTTAAGACACAAA
TATGTATGATTTTTTCAAGACTTCCATCTATTTAGAGGATTTTTGAAAGATCATATCTCTGTAAC
TATTTTAGATATGCATCGGATATAAATATTTTTAAAAAATAAAAAGTTGGAGCAACGGTGGCTTC
TCCTGCTAATCTTACACCATTGGTCTTTGTTGAAGGTAGGTTTAGGACTTTTAGAATTTTCTATA
TTTTAAAGTAATTAGACCTAACAATTTTGGACATGATTAATAAACACCATATGG
Found at i:712895 original size:36 final size:36
Alignment explanation
Indices: 712855--712947 Score: 116
Period size: 36 Copynumber: 2.6 Consensus size: 36
712845 ATTATTATTT
** * *
712855 AATAATA-AAAATATTTTTATTAAAATTTAATTATAA
1 AATAATATAAAA-ATTTTTAAAAAAAATGAATTATAA
* *
712891 AATAACATAAAAATTTTAAAAAAAAATGAATTATAA
1 AATAATATAAAAATTTTTAAAAAAAATGAATTATAA
712927 AATAATATAAAAATTTTTAAA
1 AATAATATAAAAATTTTTAAA
712948 CTGCAGTGGG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 44 0.92
37 4 0.08
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (36 bp):
AATAATATAAAAATTTTTAAAAAAAATGAATTATAA
Found at i:720545 original size:25 final size:24
Alignment explanation
Indices: 720517--720580 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 24
720507 AAATTTTTAT
720517 TTTTTATAAAATATTTATATTTAAA
1 TTTTTATAAAATA-TTATATTTAAA
** *
720542 TTTTTATTTAATA-TGTATTTAAA
1 TTTTTATAAAATATTATATTTAAA
720565 TATTTATATAAAATAT
1 T-TTT-TATAAAATAT
720581 AATTTTTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 10 0.32
24 3 0.10
25 18 0.58
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TTTTTATAAAATATTATATTTAAA
Found at i:720549 original size:12 final size:12
Alignment explanation
Indices: 720534--720576 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
720524 AAAATATTTA
*
720534 TATTTAAATTTT
1 TATTTAAATATT
*
720546 TATTT-AATATG
1 TATTTAAATATT
720557 TATTTAAATATT
1 TATTTAAATATT
*
720569 TATATAAA
1 TATTTAAA
720577 ATATAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (12 bp):
TATTTAAATATT
Found at i:721030 original size:14 final size:14
Alignment explanation
Indices: 721011--721096 Score: 65
Period size: 14 Copynumber: 6.5 Consensus size: 14
721001 ATTAAATTTT
721011 AATATATTATATTA
1 AATATATTATATTA
721025 AATATATTATATT-
1 AATATATTATATTA
721038 AAT-TA-TAT-TTA
1 AATATATTATATTA
* *
721049 AATAAATTATAATA
1 AATATATTATATTA
** *
721063 TTTTTATTATATTA
1 AATATATTATATTA
** *
721077 TTTATATT-TTTTA
1 AATATATTATATTA
721090 AATATAT
1 AATATAT
721097 AAATTCGTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
10 2 0.04
11 6 0.11
12 3 0.05
13 15 0.26
14 31 0.54
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATATATTATATTA
Found at i:721070 original size:24 final size:23
Alignment explanation
Indices: 721003--721066 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
720993 TATAAATTAT
* *
721003 TAAATTTTAATATATTATATTAAA
1 TAAATTATAATATTTTAT-TTAAA
* * *
721027 TATATTATATTAATTATATTTAAA
1 TAAATTATAAT-ATTTTATTTAAA
721051 TAAATTATAATATTTT
1 TAAATTATAATATTTT
721067 TATTATATTA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
23 4 0.13
24 22 0.71
25 5 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TAAATTATAATATTTTATTTAAA
Found at i:724149 original size:15 final size:15
Alignment explanation
Indices: 724129--724160 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
724119 TAAGTCGTTA
724129 TTAAGTTATTCAAAT
1 TTAAGTTATTCAAAT
724144 TTAAGTTATTCAAAT
1 TTAAGTTATTCAAAT
724159 TT
1 TT
724161 GATTTGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (15 bp):
TTAAGTTATTCAAAT
Found at i:724216 original size:14 final size:14
Alignment explanation
Indices: 724199--724225 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
724189 ATTAAATTAT
724199 TTAAATTTATTTAA
1 TTAAATTTATTTAA
724213 TTAAATTTATTTA
1 TTAAATTTATTTA
724226 TACAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTAAATTTATTTAA
Found at i:725512 original size:4 final size:4
Alignment explanation
Indices: 725505--725535 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
725495 TTTTGTTATT
*
725505 TTTA TTTA TTTA TTTA TTTG TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
725536 GCAGCATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:728430 original size:81 final size:81
Alignment explanation
Indices: 728277--728430 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 81
728267 AAGTAATTCC
* * * * *
728277 TCTTGTTTTACTTTGAACCATCATTAGCACTTCCACGAAACTGGCACCGAGACCATGGCAGTTGA
1 TCTTGTTTTACTTTGAACCATCATTAACACTACCACGAAACTGGCACCAAGACCATAGCAGCTGA
728342 TTCGTATAGGTAATTT
66 TTCGTATAGGTAATTT
* * * * * * *
728358 TCTTGTTTTATTTTGAACCATCCTTAATACTACCCCGGAAGTGGCACTAAGACCATAGCAGCTGA
1 TCTTGTTTTACTTTGAACCATCATTAACACTACCACGAAACTGGCACCAAGACCATAGCAGCTGA
728423 CTT-GTATA
66 -TTCGTATA
728431 TTATTATTAG
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 58 0.97
82 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (81 bp):
TCTTGTTTTACTTTGAACCATCATTAACACTACCACGAAACTGGCACCAAGACCATAGCAGCTGA
TTCGTATAGGTAATTT
Found at i:740615 original size:22 final size:22
Alignment explanation
Indices: 740583--740636 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
740573 TGATTTAAAC
* *
740583 TCAAATT--ATTATTAATTTGT
1 TCAAATTCAATTATTAACTTAT
740603 TCAAATTCAATTATTAACTTAT
1 TCAAATTCAATTATTAACTTAT
*
740625 TTAAATTCAATT
1 TCAAATTCAATT
740637 TGTTTAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 7 0.24
22 22 0.76
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (22 bp):
TCAAATTCAATTATTAACTTAT
Found at i:740835 original size:16 final size:14
Alignment explanation
Indices: 740814--740856 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 14
740804 AAAAATTTTA
740814 ATTAAATTTATAAATT
1 ATTAAATTTA-AAA-T
740830 ATTAAATATTAAAAT
1 ATTAAAT-TTAAAAT
740845 ATATAAATTTAA
1 AT-TAAATTTAA
740857 CTCGATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.28
16 15 0.60
17 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTAAATTTAAAAT
Found at i:744359 original size:29 final size:25
Alignment explanation
Indices: 744325--744381 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 25
744315 ATTTTTATTT
744325 AATTTAAAAAATTAATAATTTTATAATTA
1 AATTTAAAAAATT--T--TTTTATAATTA
*
744354 AATTTAAATAATTTTTTTATAATTA
1 AATTTAAAAAATTTTTTTATAATTA
744379 AAT
1 AAT
744382 AAATTTCGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 14 0.52
27 1 0.04
29 12 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
AATTTAAAAAATTTTTTTATAATTA
Found at i:744879 original size:92 final size:91
Alignment explanation
Indices: 744713--745019 Score: 426
Period size: 92 Copynumber: 3.4 Consensus size: 91
744703 TTGACTCGTA
* * * * * *
744713 TAGGTAATTT-TCTTGTTTTATTTTGAAACATCCTTA-ATACTACCCCGAAAGTGGCACTAGGAC
1 TAGGTAATTTCTCTTGTTTTATTTTGAACCATCCTTACACA-TTCCACGAAAGTGGCACCAAGAC
744776 CATAGCAGCTGACTCGTATATTATTAT
65 CATAGCAGCTGACTCGTATATTATTAT
* * *
744803 TAGTTAATTTCTCTTGTTTTATTTTGAAGCATCCTTAGCACATTCCACAAAAGTGGCACCAAGAC
1 TAGGTAATTTCTCTTGTTTTATTTTGAACCATCCTTA-CACATTCCACGAAAGTGGCACCAAGAC
744868 CATAGCAGCTGACTCGTATATTATTAT
65 CATAGCAGCTGACTCGTATATTATTAT
* * * *
744895 TAGGTAATTTCTCTTGTTCTATTTTGAACCGTCCTTACA-ACTTCCACGAAGGTGGCACGAAGAC
1 TAGGTAATTTCTCTTGTTTTATTTTGAACCATCCTTACACA-TTCCACGAAAGTGGCACCAAGAC
*
744959 CATAGCAGTTGACTCGTATA-T-TTAT
65 CATAGCAGCTGACTCGTATATTATTAT
744984 TAGGTAATTTCTCTTGTTTTATTTTGAACCATCCTT
1 TAGGTAATTTCTCTTGTTTTATTTTGAACCATCCTT
745020 TATGACCAAA
Statistics
Matches: 195, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
89 38 0.19
90 11 0.06
91 66 0.34
92 78 0.40
93 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (91 bp):
TAGGTAATTTCTCTTGTTTTATTTTGAACCATCCTTACACATTCCACGAAAGTGGCACCAAGACC
ATAGCAGCTGACTCGTATATTATTAT
Found at i:748837 original size:27 final size:26
Alignment explanation
Indices: 748796--748846 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
748786 GTCTATCCCT
*
748796 TATTTTTATTGAATTTAAAAAATTAA
1 TATTTTTATTAAATTTAAAAAATTAA
*
748822 TATTTTTAATTAAATTTAAATAATT
1 TATTTTT-ATTAAATTTAAAAAATT
748847 TTTTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TATTTTTATTAAATTTAAAAAATTAA
Found at i:764112 original size:233 final size:225
Alignment explanation
Indices: 763717--764142 Score: 520
Period size: 233 Copynumber: 1.9 Consensus size: 225
763707 AATATGATTC
* * * * *
763717 TAATATTTAACTTTAAATTCTAATTATTTGTACTTAATTTTTACTTAGAATTGAGATTTTTATTA
1 TAATATTTAACTTCAAACTCTAATTATTTATACTCAATTTTTACTTAAAATTGAGATTTTTATTA
* * * * *
763782 TTACTAATAAAAATACATATTAAAAATAAAAAAGTTCAATTAAGCTAATAAGTTATTCGAGTTAA
66 TTAATAATAAAAATACATATTAAAAATAAAAAAGTTCAATTAAACTAATAAATTATTCGAATCAA
* *
763847 ATATTAAGATACTTAAATTCAATTCTTTTGATAACTCAAAATTT-TTAATTTGTAATAAATAATA
131 ATATTAAAATACTTAAATTCAATTCTTTTGATAACTC-AAATTTCTTAAGTTGTAATAAATAATA
763911 ATTATAGTGTCTAGAAAAATAACTTTAATTT
195 ATTATAGTGTCTAGAAAAATAACTTTAATTT
*
763942 TAATATTTAACTTCAAACTC-AATTATTTATACTCAATTTTTAATTTAAAATTGAGAATTTTTTA
1 TAATATTTAACTTCAAACTCTAATTATTTATACTCAATTTTT-ACTTAAAATTGAG-A-TTTTTA
* * *
764006 TGCTTAATTAAAATAATAAAAATATATATTAAAAAT-AAAAAGATTTAATTAAACTCATAAATTA
63 ---TT-ATT--AATAATAAAAATACATATTAAAAATAAAAAAG-TTCAATTAAACTAATAAATTA
* * * *
764070 TTCGAATCAAATATTAAAATATTTAAATT-TA-TCTTATTTGATAACTCGAGTTTCTTAAGTTGT
121 TTCGAATCAAATATTAAAATACTTAAATTCAATTC-T-TTTGATAACTCAAATTTCTTAAGTTGT
764133 AATAAATAAT
184 AATAAATAAT
764143 GATTGAAATA
Statistics
Matches: 168, Mismatches: 20, Indels: 18
0.82 0.10 0.09
Matches are distributed among these distances:
224 19 0.11
225 29 0.17
226 1 0.01
227 6 0.04
230 2 0.01
231 5 0.03
232 12 0.07
233 94 0.56
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (225 bp):
TAATATTTAACTTCAAACTCTAATTATTTATACTCAATTTTTACTTAAAATTGAGATTTTTATTA
TTAATAATAAAAATACATATTAAAAATAAAAAAGTTCAATTAAACTAATAAATTATTCGAATCAA
ATATTAAAATACTTAAATTCAATTCTTTTGATAACTCAAATTTCTTAAGTTGTAATAAATAATAA
TTATAGTGTCTAGAAAAATAACTTTAATTT
Found at i:764187 original size:2 final size:2
Alignment explanation
Indices: 764180--764205 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
764170 ACAAAGTGAA
764180 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
764206 TTACTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:765381 original size:18 final size:18
Alignment explanation
Indices: 765350--765387 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
765340 ATTTTATATT
*
765350 TAATTTTTGATATATTAA
1 TAATTTTTGATATATAAA
765368 TAATTTTT-ATTATATAAA
1 TAATTTTTGA-TATATAAA
765386 TA
1 TA
765388 TTTATAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
TAATTTTTGATATATAAA
Found at i:780253 original size:18 final size:18
Alignment explanation
Indices: 780229--780265 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
780219 CAATACGAAT
*
780229 ATTTTTAATTT-TTTAAA
1 ATTTTTTATTTATTTAAA
780246 ATTTTTTATTTATTTAAA
1 ATTTTTTATTTATTTAAA
780264 AT
1 AT
780266 ATTATATCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTTTATTTATTTAAA
Found at i:782703 original size:27 final size:29
Alignment explanation
Indices: 782673--782746 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 29
782663 ATTTGTTTTT
782673 ATTTT-ATTAATTTTTTATATA-AATATA
1 ATTTTAATTAATTTTTTATATATAATATA
*
782700 ATTTTAATT-ATTATTTA-ATATAATATA
1 ATTTTAATTAATTTTTTATATATAATATA
* *
782727 ATTTTGATATAAATTTTTAT
1 ATTTTAAT-TAATTTTTTAT
782747 TTTTATAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 3 0.08
27 25 0.66
28 4 0.11
29 6 0.16
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (29 bp):
ATTTTAATTAATTTTTTATATATAATATA
Found at i:782704 original size:16 final size:15
Alignment explanation
Indices: 782685--782738 Score: 51
Period size: 16 Copynumber: 3.7 Consensus size: 15
782675 TTTATTAATT
782685 TTTTATATAAATATAA
1 TTTTATAT-AATATAA
*
782701 TTTTA-AT--TATTA
1 TTTTATATAATATAA
*
782713 TTTAATATAATATAA
1 TTTTATATAATATAA
782728 TTTTGATATAA
1 TTTT-ATATAA
782739 ATTTTTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
12 8 0.27
13 2 0.07
15 9 0.30
16 11 0.37
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TTTTATATAATATAA
Found at i:782883 original size:13 final size:14
Alignment explanation
Indices: 782856--782886 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
782846 CCCATTCTAA
782856 AAAATAAATTTTTT
1 AAAATAAATTTTTT
782870 AAAATAAA-TTTTT
1 AAAATAAATTTTTT
782883 AAAA
1 AAAA
782887 AAGATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAATAAATTTTTT
Found at i:782887 original size:14 final size:14
Alignment explanation
Indices: 782855--782887 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
782845 GCCCATTCTA
782855 AAAAATAAATTTTT
1 AAAAATAAATTTTT
*
782869 TAAAATAAATTTTT
1 AAAAATAAATTTTT
782883 AAAAA
1 AAAAA
782888 AGATTAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAAATAAATTTTT
Found at i:783113 original size:22 final size:22
Alignment explanation
Indices: 783088--783132 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
783078 TGTACATGTC
783088 ATTTATATTAT-TATTTTAATTA
1 ATTT-TATTATATATTTTAATTA
* *
783110 ATTTTTTTATATTTTTTAATTA
1 ATTTTATTATATATTTTAATTA
783132 A
1 A
783133 ATTAATATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
ATTTTATTATATATTTTAATTA
Found at i:784898 original size:23 final size:23
Alignment explanation
Indices: 784871--784914 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
784861 TTTAAGAAAT
*
784871 TGCTACAATTACTGATTGAAGAC
1 TGCTACAATTACAGATTGAAGAC
784894 TGCTACAATTACAGATTGAAG
1 TGCTACAATTACAGATTGAAG
784915 TGTTTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (23 bp):
TGCTACAATTACAGATTGAAGAC
Found at i:785464 original size:18 final size:17
Alignment explanation
Indices: 785437--785470 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
785427 TTGATATGTA
785437 GAAAAAAATAATAATAG
1 GAAAAAAATAATAATAG
785454 GAAAGAAAATAATAATA
1 GAAA-AAAATAATAATA
785471 AAAAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.18
Consensus pattern (17 bp):
GAAAAAAATAATAATAG
Found at i:786224 original size:11 final size:11
Alignment explanation
Indices: 786208--786257 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
786198 TTAATTTATG
786208 TATTTATGTTA
1 TATTTATGTTA
786219 TATTTATGTGTA
1 TATTTATGT-TA
*
786231 TATATAT-TTA
1 TATTTATGTTA
*
786241 TA-TTATAATTA
1 TATTTAT-GTTA
786252 TATTTA
1 TATTTA
786258 AGCATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 3 0.09
10 4 0.12
11 15 0.45
12 11 0.33
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (11 bp):
TATTTATGTTA
Found at i:790656 original size:14 final size:14
Alignment explanation
Indices: 790637--790697 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 14
790627 TGTTTTGACA
790637 TATTATATTATATT
1 TATTATATTATATT
*
790651 TATTATATTATTTTT
1 TATTATATTA-TATT
*
790666 TATT-TATTTAATACAT
1 TATTATA-TT-ATA-TT
790682 TATTGATATTATATT
1 TATT-ATATTATATT
790697 T
1 T
790698 TCGTATCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
14 12 0.32
15 12 0.32
16 9 0.24
17 2 0.05
18 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (14 bp):
TATTATATTATATT
Found at i:790660 original size:19 final size:19
Alignment explanation
Indices: 790636--790673 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
790626 ATGTTTTGAC
790636 ATATTATATTATATTTATT
1 ATATTATATTATATTTATT
* *
790655 ATATTATTTTTTATTTATT
1 ATATTATATTATATTTATT
790674 TAATACATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATATTATATTATATTTATT
Found at i:792820 original size:22 final size:20
Alignment explanation
Indices: 792781--792820 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
792771 TATTAGATTA
*
792781 ATATTTTTAATTTCAAATAC
1 ATATTTTTAATTTAAAATAC
792801 ATATTTTTAGAATTTAAAAT
1 ATATTTTT--AATTTAAAAT
792821 TTTTTAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
22 9 0.53
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATTTTTAATTTAAAATAC
Found at i:793018 original size:15 final size:16
Alignment explanation
Indices: 792998--793031 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
792988 ATAATATAAA
792998 ATAAATT-TTAGTTTT
1 ATAAATTATTAGTTTT
793013 ATAAATTATTAGTTTT
1 ATAAATTATTAGTTTT
793029 ATA
1 ATA
793032 GTATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
ATAAATTATTAGTTTT
Found at i:794117 original size:16 final size:17
Alignment explanation
Indices: 794098--794131 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
794088 TAAATTAATA
*
794098 ATATATTAAAT-TTTTT
1 ATATATAAAATATTTTT
794114 ATATATAAAATATTTTT
1 ATATATAAAATATTTTT
794131 A
1 A
794132 AATAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATATAAAATATTTTT
Found at i:795562 original size:13 final size:13
Alignment explanation
Indices: 795530--795568 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
795520 ATATTTTTAT
795530 TTAAATAT-AA-A
1 TTAAATATAAATA
*
795541 TTCAATATAAATA
1 TTAAATATAAATA
795554 TTAAATATAAATA
1 TTAAATATAAATA
795567 TT
1 TT
795569 TTAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 7 0.29
12 2 0.08
13 15 0.62
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (13 bp):
TTAAATATAAATA
Found at i:795578 original size:19 final size:19
Alignment explanation
Indices: 795556--795593 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
795546 TATAAATATT
* *
795556 AAATATAAATATTTTAAAA
1 AAATAAAAATATTTGAAAA
795575 AAATAAAAATATTTGAAAA
1 AAATAAAAATATTTGAAAA
795594 TGGCTAGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
AAATAAAAATATTTGAAAA
Found at i:799732 original size:210 final size:209
Alignment explanation
Indices: 799106--799734 Score: 866
Period size: 210 Copynumber: 3.0 Consensus size: 209
799096 TCTTAAGAGG
* * * * * * *
799106 CTTAAACGTTTGAATTTAGGC-GGCTGCAAAAATCTTAGGAGTCTTCCAGCCAAAATTGGAATGA
1 CTTAAACTTTTGAATTTA-ACAGACTGTAAAAGTCTTAGGAGTCTTCCCGCCAAAATTGGAATGG
* * *
799170 AAAATCTTGAAAGATTATTTCTTTCAGGCTGCTCAAATCTTAAAAGCTTTCCGGAGATCGATGGC
65 AAACTCTTGAAA-ATTAATTCTTTCAGGCTGCTCAAATCTTAAAAGCTTTCCAGAGATCGATGGC
* *
799235 GAAATGAAACGTTTGCGGGAGCTTTCTTTAGATGGGACAGGCATTGAAGGACTTCCCTCTTCCAT
129 GAAATGAAATGTTTGCGGGAGCTTTATTTAGATGGGACAGGCATTGAAGGACTTCCCTCTTCCAT
* * *
799300 TGGAAATCTCAACGGA
194 CGGAAATCTCAGCAGA
*
799316 CTTAAACTTTTGAATTTAAGAGACTGTAAAAGTCTTAGGAGTCTTCCCGCCAAAATTGGAATGGA
1 CTTAAACTTTTGAATTTAACAGACTGTAAAAGTCTTAGGAGTCTTCCCGCCAAAATTGGAATGGA
*
799381 ATCTCTTGAAGAATTAATTCTTTCAGGCTGCTCAAATCTTAAAAGCTTTCCAGAGATCGATGGCG
66 AACTCTTGAA-AATTAATTCTTTCAGGCTGCTCAAATCTTAAAAGCTTTCCAGAGATCGATGGCG
* * * * * * * *
799446 AAACGGAATGTTTGCAGAAGCTTTATTTAAATGGGTCAGGCATTGAAGGAGTTCCCTCTTTCATC
130 AAATGAAATGTTTGCGGGAGCTTTATTTAGATGGGACAGGCATTGAAGGACTTCCCTCTTCCATC
*
799511 GGAAGTCTCAGCAGA
195 GGAAATCTCAGCAGA
** *
799526 CTTAAACTTTTGAATTTAACAGACTGTAAAAGTCTTAGGAGTCTTCCCTTCAAAATTGAAATGGA
1 CTTAAACTTTTGAATTTAACAGACTGTAAAAGTCTTAGGAGTCTTCCCGCCAAAATTGGAATGGA
* * * * *
799591 AACTCTTGAACAATTAATTCTTTCAAGCTCCTTAAATTTTAAAAGCTTTCCAGAGATCGATGGCA
66 AACTCTTGAA-AATTAATTCTTTCAGGCTGCTCAAATCTTAAAAGCTTTCCAGAGATCGATGGCG
* * *
799656 AAATGAAATGTTTGGGGGCGCTTTATTTAGATGGGACGGGCATTGAAAGG-CTTCCCTCTTCCAT
130 AAATGAAATGTTTGCGGGAGCTTTATTTAGATGGGACAGGCATTG-AAGGACTTCCCTCTTCCAT
799720 CGGAAATCTCAGCAG
194 CGGAAATCTCAGCAG
799735 TCTTTATCGG
Statistics
Matches: 367, Mismatches: 49, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
210 362 0.99
211 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (209 bp):
CTTAAACTTTTGAATTTAACAGACTGTAAAAGTCTTAGGAGTCTTCCCGCCAAAATTGGAATGGA
AACTCTTGAAAATTAATTCTTTCAGGCTGCTCAAATCTTAAAAGCTTTCCAGAGATCGATGGCGA
AATGAAATGTTTGCGGGAGCTTTATTTAGATGGGACAGGCATTGAAGGACTTCCCTCTTCCATCG
GAAATCTCAGCAGA
Found at i:801879 original size:63 final size:63
Alignment explanation
Indices: 801780--801902 Score: 183
Period size: 63 Copynumber: 2.0 Consensus size: 63
801770 TTCAGATCAC
* * * *
801780 GAATGCGATAAACTTGAGGTGTGATTGAGAGACTATTTTTCTGCTAAGGTGAAGAAGTGTCAG
1 GAATGCGATAAACTTGAGGTGTCAATCACAGACTATTTTTCTGCTAAGGTGAAGAAGTGTCAG
* * *
801843 GAATGCGATGAATTTGAGGTGTCAATCACAGACTATTTTTCTGGTAAGGTGAAGAAGTGT
1 GAATGCGATAAACTTGAGGTGTCAATCACAGACTATTTTTCTGCTAAGGTGAAGAAGTGT
801903 GGGGTTCGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.31
Consensus pattern (63 bp):
GAATGCGATAAACTTGAGGTGTCAATCACAGACTATTTTTCTGCTAAGGTGAAGAAGTGTCAG
Found at i:805812 original size:13 final size:13
Alignment explanation
Indices: 805794--805818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
805784 ATTACTCAAA
805794 TGTATCGATACAT
1 TGTATCGATACAT
805807 TGTATCGATACA
1 TGTATCGATACA
805819 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:805883 original size:52 final size:52
Alignment explanation
Indices: 805827--805947 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
805817 CACTGATCTT
*
805827 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
805879 TGTATCGATACATGCATGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
805931 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
805948 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Done.