Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1341
Parameters: 2 7 7 80 10 50 1000
Length:  18223

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3657--3731
8
9.1
8
72
18
57
34
2
2
60
1.25
3664--3751
45
2.0
47
82
8
112
37
2
2
57
1.23
5801--5886
31
2.9
30
80
13
97
59
1
1
38
1.13
6889--6927
17
2.3
18
83
16
57
30
7
0
61
1.24
7291--7332
20
2.2
19
87
8
59
47
0
0
52
1.00
7471--7496
2
13.0
2
100
0
52
50
0
0
50
1.00
8680--8717
3
12.7
3
100
0
76
34
0
0
65
0.93
9019--9083
32
2.0
33
87
3
96
53
0
0
46
1.00
9024--9080
17
3.5
17
71
23
59
54
0
0
45
0.99
9484--9534
19
2.7
19
81
9
59
35
0
1
62
1.06
10449--10476
2
14.0
2
100
0
56
50
0
0
50
1.00
11412--11459
16
2.9
17
71
6
53
50
0
0
50
1.00
11406--11461
28
2.0
30
82
10
73
55
0
0
44
0.99
11697--11730
17
1.9
18
94
5
61
44
0
0
55
0.99
12207--12255
13
3.7
13
76
13
55
34
0
2
63
1.06
12209--12253
21
2.1
21
84
8
56
35
0
2
62
1.08
12324--12364
17
2.4
18
80
8
50
31
0
4
63
1.15
12355--12389
16
2.2
16
94
0
61
22
0
0
77
0.78

Tables:   1

The End!