genome.fa.s1342.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1342
Parameters: 2 7 7 80 10 50 1000
Length:  54943

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11091--11172	28	2.9	28	80	7	96	26	17	31	24	1.97
11155--11325	51	3.3	51	79	4	198	32	11	26	29	1.92
11308--11383	27	2.8	28	88	6	102	21	21	34	23	1.97
13848--13873	13	2.0	13	100	0	52	38	15	15	30	1.88
13827--13893	33	2.0	33	88	0	98	43	16	14	25	1.86
13913--13980	19	3.9	18	76	23	83	38	14	11	35	1.83
13935--13959	13	1.9	13	100	0	50	32	16	16	36	1.90
13916--13978	32	2.0	32	96	0	117	36	15	12	34	1.86
14016--14073	21	2.7	22	81	7	75	32	12	15	39	1.84
16337--16484	20	7.8	20	76	15	136	28	15	13	42	1.85
16355--16423	33	2.1	33	89	5	104	28	14	13	43	1.83
16380--16404	13	1.9	13	100	0	50	32	16	12	40	1.84
16337--16445	53	2.1	53	89	3	166	27	14	14	43	1.85
18807--18985	51	3.5	51	80	3	184	29	24	12	34	1.92
18973--19044	28	2.6	28	88	4	110	22	34	19	23	1.96
19100--19307	79	2.6	79	81	3	222	28	23	12	35	1.91
21178--21593	29	14.6	29	84	3	407	32	26	16	24	1.96
21185--21593	115	3.6	114	84	4	486	33	26	16	23	1.96
22827--22860	10	3.4	10	95	0	59	88	0	11	0	0.52
23111--23157	3	15.7	3	100	0	94	34	0	0	65	0.93
25775--26245	79	6.0	79	76	6	418	28	22	12	36	1.91
25775--26241	155	3.0	157	82	5	566	28	22	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26200--26254	28	1.9	29	92	3	94	21	25	21	30	1.98
25775--26245	80	6.0	79	75	7	411	28	22	12	36	1.91
27183--27332	51	3.0	51	87	6	202	54	2	2	41	1.23
30801--30840	21	1.9	21	84	0	53	40	2	0	57	1.12
32682--32730	20	2.5	19	77	9	53	40	16	12	30	1.85
32647--32823	92	1.9	92	87	2	257	38	16	14	30	1.88
38988--39025	20	1.9	20	94	0	67	44	23	2	28	1.67
44778--44892	51	2.3	51	84	3	142	45	13	11	30	1.78
44929--44979	20	2.5	21	90	3	77	29	15	11	43	1.82
45945--46485	104	5.2	103	76	7	398	37	13	20	27	1.91
45878--46478	52	11.5	52	73	3	357	37	13	20	28	1.91
45967--46485	209	2.5	209	82	3	546	38	13	20	27	1.91
46501--46780	33	8.7	33	76	4	216	22	17	27	33	1.96
46509--46786	97	2.9	94	77	11	248	23	15	27	33	1.95
47691--47737	20	2.3	20	92	3	76	31	12	6	48	1.66
47699--47744	20	2.2	20	88	3	65	34	17	6	41	1.75
49035--49060	13	2.0	13	100	0	52	38	15	15	30	1.88
50855--50967	27	4.1	27	80	12	115	38	11	4	46	1.60
50920--50971	14	3.8	14	77	12	63	38	11	3	46	1.59
50884--50981	27	3.7	26	80	5	106	38	10	4	46	1.57
51447--51484	10	3.4	11	82	17	51	76	0	21	2	0.91
52441--52473	17	1.9	17	100	0	66	51	12	6	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52604--52687	1	84.0	1	85	0	105	0	3	91	4	0.50
52846--52887	19	2.2	18	84	16	50	59	35	0	4	1.19
53018--53049	15	2.2	14	94	5	55	53	46	0	0	1.00
53236--53346	1	111.0	1	85	0	150	6	92	0	0	0.41
53238--53409	8	20.9	8	78	12	138	13	83	0	2	0.74
53234--53353	44	2.8	44	89	2	181	8	90	0	0	0.48
53234--53409	47	3.8	44	75	15	96	14	83	0	2	0.74
53234--53410	11	16.6	11	76	12	113	14	83	0	2	0.74

Tables:   1

The End!