Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1346
Parameters: 2 7 7 80 10 50 1000
Length:  78516

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431--469
6
6.5
6
100
0
78
30
51
0
17
1.46
5233--5268
2
18.0
2
100
0
72
50
0
0
50
1.00
17296--17323
2
14.0
2
100
0
56
50
0
50
0
1.00
25653--25683
3
10.3
3
92
0
53
64
0
0
35
0.94
30125--30160
17
2.1
18
89
5
56
61
0
0
38
0.96
33115--33159
2
22.5
2
86
0
63
48
4
2
44
1.35
36268--36292
6
4.2
6
100
0
50
32
0
32
36
1.58
36959--36992
6
5.7
6
96
0
59
17
2
50
29
1.61
36962--37001
18
2.2
18
86
0
53
20
5
47
27
1.70
37893--37919
2
13.5
2
100
0
54
0
0
48
51
1.00
45123--45163
19
2.3
17
87
8
55
7
26
9
56
1.58
50607--50644
2
19.0
2
100
0
76
50
0
0
50
1.00
54662--54701
2
20.0
2
89
0
62
47
2
0
50
1.14
55067--55106
3
13.3
3
83
0
53
60
0
2
37
1.11
55199--55224
3
8.7
3
100
0
52
34
0
0
65
0.93
55612--55649
2
19.5
2
94
5
69
52
0
0
47
1.00
56092--56119
3
9.3
3
100
0
56
64
0
0
35
0.94
56421--56448
2
14.0
2
100
0
56
50
0
50
0
1.00
57620--57651
3
10.7
3
100
0
64
68
0
0
31
0.90
61331--61515
34
5.5
34
87
3
257
40
26
7
25
1.82
65581--65643
19
3.3
19
88
0
81
36
19
15
28
1.92
65949--66132
34
5.4
34
86
3
246
40
26
7
25
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77562--77601
2
20.5
2
94
5
73
52
0
0
47
1.00

Tables:   1

The End!