Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold135

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 369576
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.25

Warning! 82397 characters in sequence are not A, C, G, or T


File 3 of 3

Found at i:365178 original size:10 final size:10

Alignment explanation


    Indices: 365123--365178  Score: 62
    Period size: 10  Copynumber: 5.7  Consensus size: 10

     365113 AATTTTTTAA

                      
     365123 TTTTTTC-CT
          1 TTTTTTCTCT

                  *   
     365132 TTTTTTTTC-
          1 TTTTTTCTCT

                      
     365141 TTTTTTCTCT
          1 TTTTTTCTCT

                  *  * 
     365151 TTTTTTTTAGT
          1 TTTTTTCT-CT

                      
     365162 TTTTTTCTCT
          1 TTTTTTCTCT

                   
     365172 TTTTTTC
          1 TTTTTTC

     365179 AAAAATTTGG


Statistics
Matches: 38,  Mismatches: 6, Indels: 5
        0.78            0.12        0.10

Matches are distributed among these distances:
   9   14  0.37
  10   16  0.42
  11    8  0.21

ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82


Consensus pattern (10 bp):   
TTTTTTCTCT

Done.