genome.fa.s1350.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1350
Parameters: 2 7 7 80 10 50 1000
Length:  99924

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10636--10668	16	2.0	17	88	5	50	9	33	33	24	1.87
12899--12950	11	4.5	11	84	13	68	88	9	1	0	0.59
12899--12943	12	3.7	12	88	5	72	88	11	0	0	0.50
12901--12949	25	2.0	25	91	0	80	87	10	2	0	0.62
12899--12950	1	52.0	1	80	0	50	88	9	1	0	0.59
14195--15145	28	32.8	28	76	12	734	28	32	17	21	1.96
14195--15145	88	10.9	83	75	13	689	28	32	17	21	1.96
15671--15745	20	3.8	20	78	0	87	34	13	12	40	1.81
15671--15748	40	2.0	39	87	2	111	34	12	12	39	1.82
16657--16708	22	2.3	23	93	6	97	19	11	9	59	1.59
25486--25553	13	5.7	12	76	15	52	61	0	1	36	1.05
25462--25551	29	3.0	29	74	13	85	60	0	1	38	1.04
25491--25551	6	10.0	6	73	16	54	63	0	0	36	0.94
25475--25553	17	5.1	17	67	25	50	59	0	1	39	1.06
25700--25734	11	3.3	11	84	8	54	62	0	2	34	1.10
26030--26069	14	2.9	14	89	10	64	60	0	0	40	0.97
26041--26090	11	4.7	11	78	16	52	60	0	0	40	0.97
26076--26148	31	2.4	30	78	10	78	45	1	2	50	1.24
26088--26167	28	2.9	27	76	20	76	42	1	3	52	1.27
26142--26175	16	2.2	16	89	5	52	47	0	5	47	1.26
29121--29160	1	40.0	1	100	0	80	100	0	0	0	0.00
29079--29205	63	2.0	63	98	0	245	72	1	11	14	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36416--36461	24	1.9	24	90	0	74	32	17	19	30	1.95
37559--37593	18	2.0	18	88	5	54	48	5	2	42	1.41
38095--38128	14	2.3	15	85	10	52	29	0	2	67	1.05
38120--38177	30	1.9	31	82	3	73	39	1	3	55	1.27
38893--38931	19	2.2	17	86	9	51	38	2	0	58	1.12
42936--42991	28	2.0	27	82	6	67	53	0	0	46	1.00
43594--43664	32	2.2	33	87	5	101	33	2	5	57	1.37
43979--44102	64	2.0	64	87	3	180	49	6	17	26	1.71
44854--45353	250	2.0	251	96	1	914	42	7	11	38	1.70
49473--49554	43	1.9	43	97	0	155	41	10	7	40	1.68
49947--50009	25	2.5	24	85	12	74	49	0	4	46	1.23
50080--50135	21	2.7	20	76	15	60	62	1	1	33	1.16
50243--50316	33	2.3	32	83	6	87	52	0	2	44	1.15
50248--50326	33	2.3	33	80	6	86	51	0	2	45	1.14
49979--50361	111	3.4	109	79	12	370	53	2	3	41	1.30
50301--50388	23	3.8	23	76	10	90	61	3	2	32	1.25
50308--50408	46	2.2	46	81	11	118	61	4	1	31	1.28
51360--51385	13	2.0	13	100	0	52	30	15	15	38	1.88
51340--51403	32	2.0	33	90	3	103	28	14	18	39	1.90
51340--51410	19	4.0	18	72	25	62	26	12	21	39	1.89
53467--53509	20	2.1	20	86	4	59	9	30	44	16	1.79
53950--53988	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59445--59483	13	3.0	13	96	0	69	30	17	15	35	1.91
59606--59648	20	2.2	19	84	16	52	30	20	4	44	1.72
63238--63698	92	5.1	91	86	5	614	41	7	16	34	1.75
63241--63697	90	5.1	90	85	6	602	41	7	15	35	1.75
66908--66981	20	3.7	20	80	7	87	40	9	16	33	1.80
67182--67440	88	3.0	87	85	2	333	41	8	14	35	1.76
67294--67580	155	1.8	158	82	3	375	42	8	13	35	1.74
70946--71604	298	2.2	295	87	1	958	47	7	8	37	1.62
71947--72015	32	2.2	32	82	10	88	44	0	0	55	0.99
74310--74378	31	2.3	31	87	7	97	40	1	0	57	1.07
74347--74397	22	2.3	22	96	0	93	49	0	1	49	1.12
75877--75909	15	2.1	16	94	5	59	57	0	0	42	0.98
75850--75912	27	2.4	26	84	7	83	55	1	0	42	1.09
77049--77084	14	2.5	15	90	4	56	11	5	0	83	0.80
77097--77172	25	3.0	25	77	7	75	44	0	0	55	0.99
77662--77697	18	2.0	18	94	0	63	5	25	27	41	1.77
77713--77820	57	1.9	57	92	0	180	20	12	20	47	1.81
77835--77883	19	2.5	19	80	9	55	18	4	4	73	1.15
78767--78813	16	2.9	15	90	6	58	55	0	4	40	1.19
79007--79051	16	2.8	16	89	0	72	57	0	0	42	0.98
80555--80606	22	2.5	20	82	14	61	26	3	0	69	1.06
80562--80619	22	2.5	23	81	13	66	31	5	0	63	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81938--81988	17	2.9	17	85	2	66	43	1	0	54	1.11
82339--82387	17	2.6	20	84	12	68	53	0	0	46	1.00
82333--82390	28	2.1	29	84	12	77	55	0	0	44	0.99
83777--83831	19	2.9	19	75	0	56	45	0	9	45	1.35
84734--84824	17	5.4	17	71	17	73	51	0	0	48	1.00
84731--84806	29	2.5	30	82	16	86	51	0	0	48	1.00
85546--85603	29	2.0	29	100	0	116	41	6	20	31	1.79
93335--93457	58	2.1	57	81	8	142	47	12	8	32	1.70
93364--93847	58	8.3	58	74	7	293	46	13	7	31	1.72
93546--93578	9	3.7	9	92	8	50	57	0	0	42	0.98
93771--93910	59	2.4	59	82	9	153	53	10	8	27	1.63
96036--96154	56	2.1	55	79	1	130	33	16	8	41	1.79
96451--96492	21	1.9	23	85	9	61	38	4	7	50	1.51
96747--96784	18	2.1	18	95	0	67	39	10	21	28	1.86

Tables:   1

The End!