Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1351
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39714
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Found at i:1722 original size:38 final size:38
Alignment explanation
Indices: 1680--1755 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
1670 ATCGGGATAG
* *
1680 GTAGCTTTTAGCCTTGAACTTTCTATAGCGACAACTAT
1 GTAGCTTTTAGCCTTGAACTTTCCATAACGACAACTAT
*
1718 GTAGCTTTTGGCCTTGAACTTTCCATAACGACAACTAT
1 GTAGCTTTTAGCCTTGAACTTTCCATAACGACAACTAT
1756 CGGATTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (38 bp):
GTAGCTTTTAGCCTTGAACTTTCCATAACGACAACTAT
Found at i:6529 original size:2 final size:2
Alignment explanation
Indices: 6522--6572 Score: 84
Period size: 2 Copynumber: 24.5 Consensus size: 2
6512 CTTTATATTA
6522 AT AT AT AT AT AT AT AT AT AT AT AGT AT ACT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT A-T AT AT AT AT AT AT AT
6566 AT AT AT A
1 AT AT AT A
6573 CAAGAAATCA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 43 0.91
3 4 0.09
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6819 original size:54 final size:54
Alignment explanation
Indices: 6746--7186 Score: 327
Period size: 53 Copynumber: 7.9 Consensus size: 54
6736 ATCTATATAA
* * *
6746 TATATATAACAATATAATTTTTTTTACATAAATATTAATATTTATTATAAATTTT
1 TATATATAA-AATACAATTTTTTTTACATAAATATTAATATTTATTATGAGTTTT
* *
6801 TATATATAAAATATAA-TTTTTTGACAT-AA-ATTAATATTTATTATTGAGTTTT
1 TATATATAAAATACAATTTTTTTTACATAAATATTAATATTTATTA-TGAGTTTT
* *
6853 TATATATAAAATAC-A---GTTTT---T-AA-CTTAATATTTATTATGAGTTTTT
1 TATATATAAAATACAATTTTTTTTACATAAATATTAATATTTATTATGAG-TTTT
* **
6899 ATAAAGAATATATAAAATACAGTTTTTTGGACATAAATATTAATATTTATTATGAGTTCTTTTTC
1 -T-----ATATATAAAATACAATTTTTTTTACATAAATATTAATATTTATTATGAG------TT-
6964 GATAT
53 --T-T
* * * *
6969 AATATATATAAAATACAGTTTTTTTAACATAAATGTTTAATATTTATTTTGAGTTTT
1 --TATATATAAAATACAATTTTTTTTACATAAAT-ATTAATATTTATTATGAGTTTT
*
7026 TATATAT-AAATACAGTTTTTTTTACATAAATATTAATATTTATTATGAGTTTT
1 TATATATAAAATACAATTTTTTTTACATAAATATTAATATTTATTATGAGTTTT
* * *
7079 TATATACTAAAATAC-A-GTTTTTTATATAAATGTTAATATTTATTATGAGCTTTT
1 TATATA-TAAAATACAATTTTTTTTACATAAATATTAATATTTATTATGAG-TTTT
* * *
7133 ATAGGGAATATATAAATACAATTTTTTTGACATAAATGTTAATATTTATTATGA
1 -TA---TATATA-AAATACAATTTTTTTTACATAAATATTAATATTTATTATGA
7187 ATTTCTTTTA
Statistics
Matches: 321, Mismatches: 27, Indels: 71
0.77 0.06 0.17
Matches are distributed among these distances:
45 4 0.01
46 20 0.06
47 1 0.00
49 3 0.01
51 15 0.05
52 34 0.11
53 66 0.21
54 35 0.11
55 24 0.07
56 2 0.01
57 3 0.01
58 10 0.03
59 2 0.01
60 31 0.10
61 19 0.06
66 32 0.10
67 16 0.05
69 1 0.00
70 1 0.00
71 2 0.01
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (54 bp):
TATATATAAAATACAATTTTTTTTACATAAATATTAATATTTATTATGAGTTTT
Found at i:7169 original size:113 final size:108
Alignment explanation
Indices: 6971--7186 Score: 294
Period size: 113 Copynumber: 2.0 Consensus size: 108
6961 TTCGATATAA
*
6971 TATATATAAAATACAGTTTTTTTAACATAAATGTTTAATATTTATTTTGAGTTTTTATATATAAA
1 TATATATAAAATACAGTTTTTTTAACATAAATGTTTAATATTTATTATGAGTTTTTATATATAAA
* *
7036 TACAGTTTTTTTTACATAAATATTAATATTTATTATGAGTTTT
66 TACAATTTTTTTGACATAAATATTAATATTTATTATGAGTTTT
*
7079 TATATACTAAAATACAG-TTTTTT-ATATAAATG-TTAATATTTATTATGAGCTTTTATAGGGAA
1 TATATA-TAAAATACAGTTTTTTTAACATAAATGTTTAATATTTATTATGAG-TTTT-T-----A
*
7141 TATATAAATACAATTTTTTTGACATAAATGTTAATATTTATTATGA
58 TATATAAATACAATTTTTTTGACATAAATATTAATATTTATTATGA
7187 ATTTCTTTTA
Statistics
Matches: 95, Mismatches: 5, Indels: 11
0.86 0.05 0.10
Matches are distributed among these distances:
106 16 0.17
107 12 0.13
108 13 0.14
109 10 0.11
113 44 0.46
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (108 bp):
TATATATAAAATACAGTTTTTTTAACATAAATGTTTAATATTTATTATGAGTTTTTATATATAAA
TACAATTTTTTTGACATAAATATTAATATTTATTATGAGTTTT
Found at i:7344 original size:43 final size:43
Alignment explanation
Indices: 7296--7377 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
7286 TTTTATCATA
* * *
7296 TTAAATTAATCAATAGATGTATAGAGATATATATTCATTGATT
1 TTAAATAAATCAATAGATATATAGAGATATAGATTCATTGATT
* *
7339 TTAAATAAATTAATAGATATATAGATATATAGATTCATT
1 TTAAATAAATCAATAGATATATAGAGATATAGATTCATT
7378 AAGTATTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (43 bp):
TTAAATAAATCAATAGATATATAGAGATATAGATTCATTGATT
Found at i:7488 original size:142 final size:135
Alignment explanation
Indices: 7260--7516 Score: 351
Period size: 142 Copynumber: 1.8 Consensus size: 135
7250 AAGTATTAAT
* *
7260 TAAATATTAATATTTATTATGAGTTTTTTTATCATATTAAATTAATCAATAGATGTATAGAGATA
1 TAAATATTAATATTTATTATGAGTTTTTTTATAATATTAAATT-ATCAATAGATGTATAGAAATA
7325 TATATTCATTGATTTTAAATAAATTAATAGATATATAGATATATAGATTCATTAAGTATTAATTA
65 TATATTCATTGA-TTT--AT-AA-TAATAGATATA-AGATATATAGATTCATTAAGTATTAATTA
7390 ATTTTTTTGATA
124 ATTTTTTTGATA
*
7402 TAAATATTAATATTTATTATGAGTTTTTTTATAATATTAAATT-T-AATCG-T-TATAGAAATAT
1 TAAATATTAATATTTATTATGAGTTTTTTTATAATATTAAATTATCAATAGATGTATAGAAATA-
7463 TATATTCATTGACTTTAAATTAATAATAGATATAAGATATATAGATTCATTAAG
65 TATATTCATTGA-TTT--A-TAATAATAGATATAAGATATATAGATTCATTAAG
7517 AATAATGCAT
Statistics
Matches: 109, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
136 20 0.18
137 20 0.18
138 21 0.19
139 5 0.05
140 1 0.01
142 42 0.39
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (135 bp):
TAAATATTAATATTTATTATGAGTTTTTTTATAATATTAAATTATCAATAGATGTATAGAAATAT
ATATTCATTGATTTATAATAATAGATATAAGATATATAGATTCATTAAGTATTAATTAATTTTTT
TGATA
Found at i:7748 original size:13 final size:14
Alignment explanation
Indices: 7721--7760 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
7711 CTAATTAATT
*
7721 AATTAAATTACTAA
1 AATTTAATTACTAA
7735 AATTTAATTA-TAA
1 AATTTAATTACTAA
7748 AATTT-ATTACTAA
1 AATTTAATTACTAA
7761 TTAATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 4 0.17
13 11 0.46
14 9 0.38
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTAATTACTAA
Found at i:7764 original size:23 final size:23
Alignment explanation
Indices: 7708--7766 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
7698 ATTTATTGAT
*
7708 TTACTAATTAATTAATTAAATTA
1 TTACTAATTAATTAATAAAATTA
* *
7731 CTA-AAATTTAATT-ATAAAATTTA
1 TTACTAA-TTAATTAATAAAA-TTA
7754 TTACTAATTAATT
1 TTACTAATTAATT
7767 TTTTTGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
22 7 0.25
23 19 0.68
24 2 0.07
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (23 bp):
TTACTAATTAATTAATAAAATTA
Found at i:12306 original size:73 final size:73
Alignment explanation
Indices: 12162--12304 Score: 254
Period size: 72 Copynumber: 2.0 Consensus size: 73
12152 CATATTTGAA
12162 AATTTTATTATTTATTTTTAACATTTGTTTTAACTCTTTTTAATAGAATTTGAATGGTTAAATTA
1 AATTTTATTATTTATTTTTAACATTTGTTTTAACTCTTTTTAATAGAATTTGAATGGTTAAATTA
12227 TTAAAATT
66 TTAAAATT
*
12235 AATTTTATTATTTATTTTTTAA-ATTTGTTTTAA-TTTTTTTAATAGAATTTGAATGGTTAAATT
1 AATTTTATTATTTA-TTTTTAACATTTGTTTTAACTCTTTTTAATAGAATTTGAATGGTTAAATT
12298 ATTAAAA
65 ATTAAAA
12305 ATATTATTAC
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
72 36 0.53
73 25 0.37
74 7 0.10
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (73 bp):
AATTTTATTATTTATTTTTAACATTTGTTTTAACTCTTTTTAATAGAATTTGAATGGTTAAATTA
TTAAAATT
Found at i:21838 original size:15 final size:14
Alignment explanation
Indices: 21818--21863 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
21808 TCATGTAATG
21818 TATTTATGTATCGTA
1 TATTTATGTATCG-A
21833 TATTTATGTA-CGA
1 TATTTATGTATCGA
*
21846 TAATTTATGTATTGA
1 T-ATTTATGTATCGA
21861 TAT
1 TAT
21864 ACATAATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 2 0.07
14 13 0.46
15 13 0.46
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.52
Consensus pattern (14 bp):
TATTTATGTATCGA
Found at i:21844 original size:158 final size:154
Alignment explanation
Indices: 21544--21855 Score: 407
Period size: 158 Copynumber: 2.0 Consensus size: 154
21534 CAGAAGTAAC
* * *
21544 CCATACTTCATCAGTGAGATTGTTTACAATCTTACACTAACAACCAAACTTTTTTCTTTTTAAGT
1 CCATACTTCATCACTGAGATTGCTTACAACCTTACACTAACAACCAAACTTTTTTCTTTTTAAGT
* * *
21609 GAACATAATGAGATCAATTTCTTATTCATTATGGATATTAATCGTGCAATGTATTTATGTATTGT
66 GAACATAATAAGATCAATTTCTTATTCATTATGGATATTAATCATGCAATGTATTTATGTATCGT
*
21674 GTATCTACGTACGATAATTATATGT
131 ATATCTACGTACGATAATT-TATGT
21699 CCATACTTCATCACTG-GAATTGCTTATC-ACCTTACAACTAACAACCAAACTTTTTTCTTTTTT
1 CCATACTTCATCACTGAG-ATTGCTTA-CAACCTTAC-ACTAACAACCAAACTTTTTTC-TTTTT
** * *
21762 AAGTGGGCATAATAAGA-CAAATTT-TTCATTTATATATGGATATTAATCATGTAATGTATTTAT
62 AAGTGAACATAATAAGATC-AATTTCTT-ATTCAT-TATGGATATTAATCATGCAATGTATTTAT
* *
21825 GTATCGTATATTTATGTACGATAATTTATGT
124 GTATCGTATATCTACGTACGATAATTTATGT
21856 ATTGATATAC
Statistics
Matches: 137, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
154 1 0.01
155 28 0.20
156 25 0.18
157 34 0.25
158 49 0.36
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (154 bp):
CCATACTTCATCACTGAGATTGCTTACAACCTTACACTAACAACCAAACTTTTTTCTTTTTAAGT
GAACATAATAAGATCAATTTCTTATTCATTATGGATATTAATCATGCAATGTATTTATGTATCGT
ATATCTACGTACGATAATTTATGT
Found at i:33516 original size:13 final size:14
Alignment explanation
Indices: 33500--33529 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
33490 TTTTGTTCAA
33500 TTTTTATTTTT-TT
1 TTTTTATTTTTCTT
33513 TTTTTATTTTTCTT
1 TTTTTATTTTTCTT
33527 TTT
1 TTT
33530 ACTTTCCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.07, C:0.03, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTATTTTTCTT
Found at i:33659 original size:14 final size:14
Alignment explanation
Indices: 33640--33682 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
33630 CCCAGCTGTC
33640 TTTTTTCTTTTTCT
1 TTTTTTCTTTTTCT
*
33654 TTTTTTCTTTCTCT
1 TTTTTTCTTTTTCT
33668 TCATTTTCTCTTTTT
1 T--TTTT-TCTTTTT
33683 TTTCATCTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 14 0.58
16 4 0.17
17 6 0.25
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTCTTTTTCT
Found at i:35874 original size:23 final size:25
Alignment explanation
Indices: 35819--35876 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
35809 TGAAGTATCC
* *
35819 TTCTTCTTTCCTCTCTTATTTTCTT
1 TTCTTTTTTCCTCTCATATTTTCTT
*
35844 TTGTTTTTTTCCTCT-AT-TTTTCTT
1 TT-CTTTTTTCCTCTCATATTTTCTT
35868 TTCTTTTTT
1 TTCTTTTTT
35877 AGATCTTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 6 0.21
24 9 0.32
25 3 0.11
26 10 0.36
ACGTcount: A:0.03, C:0.21, G:0.02, T:0.74
Consensus pattern (25 bp):
TTCTTTTTTCCTCTCATATTTTCTT
Found at i:36686 original size:395 final size:390
Alignment explanation
Indices: 35961--36748 Score: 1243
Period size: 395 Copynumber: 2.0 Consensus size: 390
35951 ATTGGCCAAT
35961 TATCTTATCACTGTGGAAGTTTCTCCACATCTTGACAACTCATCCAAGCTTGTTTGTAAATATCT
1 TATCTTATCACTGTGGAAGTTTCTCCACATCTTGACAACTCATCCAAGCTTGTTTGTAAATATCT
36026 CTTTAAATGGCTAGGTGATCTAATTAAAGGTTGAAACATTTTTAAATAAAGCATTATTTAATTGA
66 CTTTAAATGGCTAGGTGATCTAATTAAAGGTTGAAACATTTTTAAATAAAGCATTATTTAATTGA
** * *
36091 GTTTGGTCAATAATCTTAACTGTATGCCCTTAAAAAGAAACCCCCATTACAAATGGTCATATCTT
131 GTTTGGTCAATAATCTTAACTACATACCCTTAAAAAGAAACCCCCATTACAAAGGGTCATATCTT
* * *
36156 GGTTCCATGTAAGAAAAACTTTTAGCTCTAACCCTAAAAAAACCTATTAAATTATAGTTGAACTA
196 GGTTCCACGTAAGAAAAACTTTTAACTATAACCCTAAAAAAACCTATTAAATTATAGTTGAACTA
* * *
36221 AATTCAAAATAGTCAAGAAACAAATAAACTAGATGTCATTTAGTTCCCATCCATTATTTGATTAT
261 AATTCAAAATAGTCAAGAAACAAATAAACTAGATGTCATTCAGTTCCCATCCATGATTTAATTAT
*
36286 TAAACTCTATTATCTTAAGCTCATTTAAATTTTAATGGCTTAGTTACGTGAATGGTTCTCATACC
326 TAAACTCTATTATCTTAAGCTCATTTAAATTTTAATGGCTTAGTTACGTGAATGGTTCGCATACC
* * * *
36351 TATCTTATCACTGTGGAAGTTTCTCTATATCTTGACAATTCATTCAAGCTTGTTTGTAAATAATC
1 TATCTTATCACTGTGGAAGTTTCTCCACATCTTGACAACTCATCCAAGCTTGTTTGTAAAT-ATC
* * * * **
36416 TCTTTACATGGCTAGGTGATCTGATTAAGGGTTGAAACCTTTTTAAATGGAGCATTATTTTAATT
65 TCTTTAAATGGCTAGGTGATCTAATTAAAGGTTGAAACATTTTTAAATAAAGCATTA-TTTAATT
* * * * *
36481 GAGTTTGGTCGATAATTTTAACTACATATCTTTAAAAAGAAACCCCCATTCCAAAGGGTCATATC
129 GAGTTTGGTCAATAATCTTAACTACATACCCTTAAAAAGAAACCCCCATTACAAAGGGTCATATC
*
36546 TTGGTTCCACGTAAGAAAAAACTTTTAATTATAACCCTAAAAAAAACCCTATTAAATTATAGTTG
194 TTGGTTCCACGTAAG-AAAAACTTTTAACTATAACCCT-AAAAAAA-CCTATTAAATTATAGTTG
*
36611 AACTAAATTCAAAATAGTTAAGAAACAAATAAACTAGATGTCATTCAGTTCCCATCCATGATTTA
256 AACTAAATTCAAAATAGTCAAGAAACAAATAAACTAGATGTCATTCAGTTCCCATCCATGATTTA
* * * *
36676 ATTATTAAACTCTTTTATCTTAAGCTCATTTAAGTTTTAATGGTTTAGTTATGTGAATGGTTCGC
321 ATTATTAAACTCTATTATCTTAAGCTCATTTAAATTTTAATGGCTTAGTTACGTGAATGGTTCGC
36741 ATACC
386 ATACC
36746 TAT
1 TAT
36749 GTTTCAATGT
Statistics
Matches: 361, Mismatches: 32, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
390 57 0.16
391 54 0.15
392 77 0.21
393 19 0.05
394 7 0.02
395 147 0.41
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.37
Consensus pattern (390 bp):
TATCTTATCACTGTGGAAGTTTCTCCACATCTTGACAACTCATCCAAGCTTGTTTGTAAATATCT
CTTTAAATGGCTAGGTGATCTAATTAAAGGTTGAAACATTTTTAAATAAAGCATTATTTAATTGA
GTTTGGTCAATAATCTTAACTACATACCCTTAAAAAGAAACCCCCATTACAAAGGGTCATATCTT
GGTTCCACGTAAGAAAAACTTTTAACTATAACCCTAAAAAAACCTATTAAATTATAGTTGAACTA
AATTCAAAATAGTCAAGAAACAAATAAACTAGATGTCATTCAGTTCCCATCCATGATTTAATTAT
TAAACTCTATTATCTTAAGCTCATTTAAATTTTAATGGCTTAGTTACGTGAATGGTTCGCATACC
Found at i:37237 original size:16 final size:16
Alignment explanation
Indices: 37216--37246 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37206 TCGCAAGTTG
*
37216 TATTATTTTTTTTTAA
1 TATTATTATTTTTTAA
37232 TATTATTATTTTTTA
1 TATTATTATTTTTTA
37247 GCCTTTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TATTATTATTTTTTAA
Found at i:38713 original size:15 final size:14
Alignment explanation
Indices: 38685--38712 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38675 AGATAAAGTG
38685 TTTGAAAAAAAAAA
1 TTTGAAAAAAAAAA
38699 TTTGAAAAAAAAAA
1 TTTGAAAAAAAAAA
38713 AAAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (14 bp):
TTTGAAAAAAAAAA
Found at i:38750 original size:21 final size:21
Alignment explanation
Indices: 38726--38782 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
38716 AAAAAATTTA
*
38726 AATGTATCGATACATTTGTTG
1 AATGTATCGATACATTTGTGG
38747 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTGG
38768 AATGTATCGATACAT
1 AATGTATCGATACAT
38783 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (21 bp):
AATGTATCGATACATTTGTGG
Done.