Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1355
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 343905
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:981 original size:25 final size:26
Alignment explanation
Indices: 912--992 Score: 110
Period size: 28 Copynumber: 3.1 Consensus size: 26
902 TGAAAAGTTT
912 AAAAATAGGGTTGGAGTATCCCCTCGG
1 AAAAATAGGGTTGGAGTATCCCCTC-G
* *
939 AAAGAATGGGGTTAGAGTATCCCCTCG
1 AAA-AATAGGGTTGGAGTATCCCCTCG
*
966 AAAAA-AGGGTTGGAGTATCCCCGCG
1 AAAAATAGGGTTGGAGTATCCCCTCG
991 AA
1 AA
993 TAAAAATTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 19 0.40
26 2 0.04
27 7 0.15
28 20 0.42
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.20
Consensus pattern (26 bp):
AAAAATAGGGTTGGAGTATCCCCTCG
Found at i:3278 original size:51 final size:52
Alignment explanation
Indices: 3158--3297 Score: 201
Period size: 51 Copynumber: 2.7 Consensus size: 52
3148 AAAACTCTAG
* * * * *
3158 AATGTATCAATACATTGAAAAATGTATCAATATATTTGGGTCAAAAACCTAA
1 AATGTATCAATACAATGAAAAATGTATCGATACATTTAGGTCAAAAACCCAA
* *
3210 AATGTATTAATATAATGAAAAATGTATCGATACATTTAGGTC-AAAACCCAA
1 AATGTATCAATACAATGAAAAATGTATCGATACATTTAGGTCAAAAACCCAA
*
3261 AATGTATCGATACAATGAAAAATGTATCGATACATTT
1 AATGTATCAATACAATGAAAAATGTATCGATACATTT
3298 CTTTTTCAGA
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
51 42 0.54
52 36 0.46
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (52 bp):
AATGTATCAATACAATGAAAAATGTATCGATACATTTAGGTCAAAAACCCAA
Found at i:3377 original size:20 final size:20
Alignment explanation
Indices: 3354--3395 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
3344 CACTTCAAAC
* *
3354 ATGTATCGATGCATTCACTT
1 ATGTATCAATACATTCACTT
*
3374 ATGTATCAATATATTCACTT
1 ATGTATCAATACATTCACTT
3394 AT
1 AT
3396 TATATCGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.43
Consensus pattern (20 bp):
ATGTATCAATACATTCACTT
Found at i:7104 original size:34 final size:34
Alignment explanation
Indices: 7061--7126 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
7051 CTATAATTAG
*
7061 TATCGATACAAACAGT-AAATGTATCGATACAATA
1 TATCGATAC-AACACTAAAATGTATCGATACAATA
* *
7095 TATCGATACATCTCTAAAATGTATCGATACAA
1 TATCGATACAACACTAAAATGTATCGATACAA
7127 AACTAACCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 3 0.11
34 25 0.89
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.29
Consensus pattern (34 bp):
TATCGATACAACACTAAAATGTATCGATACAATA
Found at i:7983 original size:13 final size:13
Alignment explanation
Indices: 7965--7990 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7955 AATTTTTTTG
7965 TGTATCGATACAT
1 TGTATCGATACAT
7978 TGTATCGATACAT
1 TGTATCGATACAT
7991 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:10539 original size:13 final size:13
Alignment explanation
Indices: 10521--10546 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10511 TATAATCCCC
10521 CTGTATCGATACA
1 CTGTATCGATACA
10534 CTGTATCGATACA
1 CTGTATCGATACA
10547 TTTAGGACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CTGTATCGATACA
Found at i:12572 original size:15 final size:15
Alignment explanation
Indices: 12552--12582 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12542 ATTTCGTTTG
*
12552 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
12567 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
12582 G
1 G
12583 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:14415 original size:21 final size:21
Alignment explanation
Indices: 14386--14430 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
14376 AAGTTTTTAT
*
14386 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
14406 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
14428 TTT
1 TTT
14431 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:14430 original size:22 final size:21
Alignment explanation
Indices: 14375--14430 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
14365 ATGAATCATG
14375 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
14396 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
14417 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
14431 CAACTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:16676 original size:13 final size:13
Alignment explanation
Indices: 16658--16683 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16648 AATTTTTTTG
16658 TGTATCGATACAT
1 TGTATCGATACAT
16671 TGTATCGATACAT
1 TGTATCGATACAT
16684 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:19310 original size:386 final size:386
Alignment explanation
Indices: 18597--19754 Score: 2199
Period size: 386 Copynumber: 3.0 Consensus size: 386
18587 AGTCAATGGG
18597 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
1 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
18662 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
66 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
* * * * * *
18727 CTAAACGCCTTCTATGTTTTGGTCTGGCAGTACTAAAGTATGAATTTTAAAATTATGTAAAAAAC
131 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
18792 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
196 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
*
18857 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGATGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
261 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
18922 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
326 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
18983 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
1 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
19048 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
66 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
19113 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
131 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
19178 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
196 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
19243 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
261 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
19308 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
326 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
*
19369 TTGTTCTATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
1 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
19434 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
66 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
19499 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
131 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
19564 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
196 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
*
19629 CGATGTCCTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
261 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
* * * *
19694 TCAAAAACTATGGAATCAATAAAATACATTCTAGTTGGGCCGTTCAAGCCAACCAGATGAT
326 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
19755 ATTTTCGAAT
Statistics
Matches: 759, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
386 759 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (386 bp):
TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
Found at i:20409 original size:79 final size:79
Alignment explanation
Indices: 20274--20559 Score: 339
Period size: 79 Copynumber: 3.6 Consensus size: 79
20264 TCATTGATGT
* * *
20274 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCCCGTTATTTTCGAGGGGA
* *
20339 TACTTCAACCTCGG
66 TACTCCAACCTCGA
* * **
20353 TTTCATTTCTAAAATACCAATTTTTCACCATCAAGGATACTTCAACCCTC-TTATTTTCGAGGGG
1 TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCC-CGTTATTTTCGAGGGG
20417 ATACTCCAA-CTCCGA
65 ATACTCCAACCT-CGA
*
20432 TTTTATTTCTAAAATACCGA-TTTTCTACCATCGGGGACA-TTCAAACCCCGTTA-TTTCTGAGG
1 TTTTATTTCTAAAATACCGATTTTTC-ACCATCGGGGATACTTC-AACCCCGTTATTTTC-GAGG
* *
20494 GGATACTCCAACCCCAA
63 GGATACTCCAACCTCGA
** * * *
20511 TTTTATTTCTAAAATATTGATTTTCCACCATCGGAGATACTCCAACCCC
1 TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCCC
20560 AATTTTATTT
Statistics
Matches: 176, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
78 15 0.09
79 153 0.87
80 8 0.05
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (79 bp):
TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCCCGTTATTTTCGAGGGGA
TACTCCAACCTCGA
Found at i:20570 original size:130 final size:130
Alignment explanation
Indices: 20416--20688 Score: 375
Period size: 130 Copynumber: 2.1 Consensus size: 130
20406 TTTTCGAGGG
* * * * * *
20416 GATACTCCAACTCCGATTTTATTTCTAAAATACCGATTTTCTACCATCGGGGACATTCAAACCCC
1 GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGACATTCAAACCCC
* * * * *
20481 GTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATATTGATTTTCCACCATCGGA
66 GTTATTTCTGAGGAGATACTCCAACCCCAATTTTATATCTAAAACACTAATTTTCCACCATCGGA
* * *
20546 GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGATATTCCAACCTC
1 GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGACATTCAAACCCC
* * ** *
20611 GTTATTTCTGAGGAGATATTCTAACCCTGATTTTATATCTAAAACACTAATTTTTCACCATCGGA
66 GTTATTTCTGAGGAGATACTCCAACCCCAATTTTATATCTAAAACACTAATTTTCCACCATCGGA
20676 GATACTCCAACCC
1 GATACTCCAACCC
20689 TGTTATTTCC
Statistics
Matches: 124, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
130 124 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.33
Consensus pattern (130 bp):
GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGACATTCAAACCCC
GTTATTTCTGAGGAGATACTCCAACCCCAATTTTATATCTAAAACACTAATTTTCCACCATCGGA
Found at i:20571 original size:51 final size:51
Alignment explanation
Indices: 20493--20608 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
20483 TATTTCTGAG
* ***
20493 GGGATACTCCAACCCCAATTTTATTTCTAAAATATTGATTTTCCACCATC-
1 GGGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
20543 GGAGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
1 GG-GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
*
20595 GGGATATTCCAACC
1 GGGATACTCCAACC
20609 TCGTTATTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
50 2 0.03
51 55 0.93
52 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (51 bp):
GGGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
Found at i:20751 original size:209 final size:209
Alignment explanation
Indices: 20357--20751 Score: 449
Period size: 209 Copynumber: 1.9 Consensus size: 209
20347 CCTCGGTTTC
* * *
20357 ATTTCTAAAATACCAATTTTTCACCATCAAGGATACTTCAACCCTCTTATTTTCGAGGGGATACT
1 ATTTCTAAAACACCAATTTTCCACCATCAAGGATACTTCAACCCTCTTATTTTCGAGGAGATACT
* * * * *
20422 CCAACTCCGATTTTATTTCTAAAATACCGATTTTCTACCATCGGGGACATTCAAACCCCGTTATT
66 CCAACTCCGATTTTATATCTAAAACACCAATTTTCTACCATCGGAGACACTCAAACCCCGTTATT
* * * ***
20487 TCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATATTGATTTTCCACCATCGGAGATACT
131 TCCGAGGGAATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTCCACCATCGGAGATACT
20552 CCAACCCCAATTTT
196 CCAACCCCAATTTT
* *
20566 ATTTCTAAAACACCCATTTTCCACCATCAGGGATA-TTCCAA-CCTCGTTA-TTTCTGAGGAGAT
1 ATTTCTAAAACACCAATTTTCCACCATCAAGGATACTT-CAACCCTC-TTATTTTC-GAGGAGAT
* * * * * *
20628 ATTCTAAC-CCTGATTTTATATCTAAAACACTAATTTT-TCACCATCGGAGATACTCCAACCCTG
63 ACTCCAACTCC-GATTTTATATCTAAAACACCAATTTTCT-ACCATCGGAGACACTCAAACCCCG
* ** ** * *
20691 TTATTTCCGAGGGAATACTCTAACTTCGGTTTTATTTTTAAAACACCAATTTTTCACCATC
126 TTATTTCCGAGGGAATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTCCACCATC
20752 AAGGATACTC
Statistics
Matches: 152, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
208 13 0.09
209 139 0.91
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (209 bp):
ATTTCTAAAACACCAATTTTCCACCATCAAGGATACTTCAACCCTCTTATTTTCGAGGAGATACT
CCAACTCCGATTTTATATCTAAAACACCAATTTTCTACCATCGGAGACACTCAAACCCCGTTATT
TCCGAGGGAATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTCCACCATCGGAGATACT
CCAACCCCAATTTT
Found at i:20783 original size:79 final size:80
Alignment explanation
Indices: 20543--20784 Score: 269
Period size: 79 Copynumber: 3.0 Consensus size: 80
20533 TTCCACCATC
* ** * * *
20543 GGAGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGATATTCCAAC
1 GGAGATACTCTAACCCTGATTTTATTTCTAAAACACCAATTTTTCACCATCAGGGATACTCCAAC
20608 CTCGTTATTTCTGA-
66 CTCGTTATTTCTGAG
* * *
20622 GGAGATATTCTAACCCTGATTTTATATCTAAAACACTAATTTTTCACCATC-GGAGATACTCCAA
1 GGAGATACTCTAACCCTGATTTTATTTCTAAAACACCAATTTTTCACCATCAGG-GATACTCCAA
*
20686 CC-CTGTTATTTCCGAG
65 CCTC-GTTATTTCTGAG
* * * * *
20702 GGA-ATACTCTAA-CTTCGGTTTTATTTTTAAAACACCAATTTTTCACCATCAAGGATACTCTAA
1 GGAGATACTCTAACCCT-GATTTTATTTCTAAAACACCAATTTTTCACCATCAGGGATACTCCAA
* *
20765 CCTCGTTAATTCTAAG
65 CCTCGTTATTTCTGAG
20781 GGAG
1 GGAG
20785 TACCGTTATT
Statistics
Matches: 135, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
78 5 0.04
79 125 0.93
80 5 0.04
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (80 bp):
GGAGATACTCTAACCCTGATTTTATTTCTAAAACACCAATTTTTCACCATCAGGGATACTCCAAC
CTCGTTATTTCTGAG
Found at i:22695 original size:15 final size:15
Alignment explanation
Indices: 22675--22705 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22665 TCTCCAGCGA
22675 GGTATGAAAGAGAAT
1 GGTATGAAAGAGAAT
22690 GGTATGAAAGAGAAT
1 GGTATGAAAGAGAAT
22705 G
1 G
22706 ATAAGAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.35, T:0.19
Consensus pattern (15 bp):
GGTATGAAAGAGAAT
Found at i:22713 original size:15 final size:15
Alignment explanation
Indices: 22680--22713 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22670 AGCGAGGTAT
* *
22680 GAAAGAGAATGGTAT
1 GAAAGAGAATGATAA
22695 GAAAGAGAATGATAA
1 GAAAGAGAATGATAA
22710 GAAA
1 GAAA
22714 CTTTTGTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.15
Consensus pattern (15 bp):
GAAAGAGAATGATAA
Found at i:25869 original size:22 final size:22
Alignment explanation
Indices: 25844--25911 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
25834 ATAAAAAAAT
*
25844 ATGTACAGATAGCTATAATTGA
1 ATGTACATATAGCTATAATTGA
* *
25866 ATGTACATAT-GACTATAATAGT
1 ATGTACATATAG-CTATAATTGA
* *
25888 ATGTATATATAGCTTTAATTGA
1 ATGTACATATAGCTATAATTGA
25910 AT
1 AT
25912 CAACTTTACA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGTACATATAGCTATAATTGA
Found at i:26077 original size:52 final size:52
Alignment explanation
Indices: 25969--26474 Score: 392
Period size: 52 Copynumber: 9.9 Consensus size: 52
25959 TAAAATATAT
* * *
25969 TTATTTTTAAATAGTATTTCGAGATTTACT-TAAAATATTTTTTAATTTTTA
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATATTTTAATTTTTA
* * * *
26020 TTATTTTTAAATAGTCATTCGAGAATTAATGTAAAATATATTTTATTTTTTA
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATATTTTAATTTTTA
* * * *
26072 TTATTTTATAAAAAGTAATTTGAGATTTAATATAAAATGTTTTTTAATTTTTA
1 TTATTTT-TAAATAGTAATTCGAGATTTAATATAAAATATATTTTAATTTTTA
* * * *
26125 TTATTTTTAAATAGTAAATCAAGATTTAATGTAAAATATA----CA-TTTTA
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATATTTTAATTTTTA
* * * * * *
26172 TT-TTTATTAAATAATAATT-TATGATTTAGA-ATGAAATA-GTTTAAACTTTTA
1 TTATTT-TTAAATAGTAATTCGA-GATTTA-ATATAAAATATATTTTAATTTTTA
* * * *
26223 TTATTTTTTAAATAGTAAATCAACATTTAATATAAAATATATATTTTAAATTTT-
1 TTA-TTTTTAAATAGTAATTCGAGATTTAATAT-AAA-ATATATTTTAATTTTTA
* *
26277 TTACTATTTTAAATAGTCACTT-GAGATTTAATAT-AAATATTTTTTGAATTTTTA
1 TTA-T-TTTTAAATAGT-AATTCGAGATTTAATATAAAATATATTTT-AATTTTTA
* *
26331 TTATTTTTAAATAATAATTC-AGGATTTATTATAAAATAT-TTTTAAATTTTTTA
1 TTATTTTTAAATAGTAATTCGA-GATTTAATATAAAATATATTTT-AA-TTTTTA
* * *
26384 TTATTTTTTAAATAGTAATTCGATATTTAATCT-AAA-GTA-TTT-A--TTT-
1 TTA-TTTTTAAATAGTAATTCGAGATTTAATATAAAATATATTTTAATTTTTA
* ** *
26430 TTATTTTTAAATAATAATTTAAAATTTAATATAAAATAT-TTTTAA
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATATTTTAA
26475 AATTGTTAAA
Statistics
Matches: 364, Mismatches: 59, Indels: 67
0.74 0.12 0.14
Matches are distributed among these distances:
45 24 0.07
46 10 0.03
47 37 0.10
48 3 0.01
50 2 0.01
51 38 0.10
52 107 0.29
53 77 0.21
54 33 0.09
55 31 0.09
56 2 0.01
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.52
Consensus pattern (52 bp):
TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATATTTTAATTTTTA
Found at i:26123 original size:105 final size:105
Alignment explanation
Indices: 25969--26474 Score: 441
Period size: 99 Copynumber: 4.9 Consensus size: 105
25959 TAAAATATAT
* *
25969 TTATTTTTAAATAGT-ATTTCGAGATTTACT-TAAAATATTTTTTAATTTTTATTATTTTTAAAT
1 TTATTTTTAAATAGTAATTT-GAGATTTAATATAAAATGTTTTTTAATTTTTATTATTTTTAAAT
* * * * *
26032 AGTCATTCGAGAATTAATGTAAAATATATTTT-ATTTTTTA
65 AGTAAATCAAGATTTAATATAAAATATATTTTAATTTTTTA
*
26072 TTATTTTATAAAAAGTAATTTGAGATTTAATATAAAATGTTTTTTAATTTTTATTATTTTTAAAT
1 TTATTTT-TAAATAGTAATTTGAGATTTAATATAAAATGTTTTTTAATTTTTATTATTTTTAAAT
* *
26137 AGTAAATCAAGATTTAATGTAAAATATA----CA--TTTTA
65 AGTAAATCAAGATTTAATATAAAATATATTTTAATTTTTTA
* * * *
26172 TT-TTTATTAAATAATAATTT-ATGATTTAGA-ATGAAATAG--TTTAAACTTTTATTATTTTTT
1 TTATTT-TTAAATAGTAATTTGA-GATTTA-ATATAAAAT-GTTTTTTAATTTTTATTA-TTTTT
*
26232 AAATAGTAAATCAACATTTAATATAAAATATATATTTTAAATTTTTTA
61 AAATAGTAAATCAAGATTTAATAT-AAA-ATATATTTT-AATTTTTTA
* * * *
26280 CTA-TTTTAAATAGTCACTTGAGATTTAATATAAATAT-TTTTTGAATTTTTATTATTTTTAAAT
1 TTATTTTTAAATAGTAATTTGAGATTTAATATAAA-ATGTTTTTTAATTTTTATTATTTTTAAAT
* * * *
26343 AATAATTCAGGATTTATTATAAAATAT-TTTTAAATTTTTTA
65 AGTAAATCAAGATTTAATATAAAATATATTTT-AATTTTTTA
* * * *
26384 TTATTTTTTAAATAGTAATTCGATATTTAATCT-AAA-G-TATTT-A--TTT-TTATTTTTAAAT
1 TTA-TTTTTAAATAGTAATTTGAGATTTAATATAAAATGTTTTTTAATTTTTATTATTTTTAAAT
* * * *
26442 AATAATTTAAAATTTAATATAAAATAT-TTTTAA
65 AGTAAATCAAGATTTAATATAAAATATATTTTAA
26475 AATTGTTAAA
Statistics
Matches: 337, Mismatches: 39, Indels: 59
0.77 0.09 0.14
Matches are distributed among these distances:
98 16 0.05
99 92 0.27
100 16 0.05
101 5 0.01
102 2 0.01
103 10 0.03
104 33 0.10
105 66 0.20
106 28 0.08
107 45 0.13
108 24 0.07
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.52
Consensus pattern (105 bp):
TTATTTTTAAATAGTAATTTGAGATTTAATATAAAATGTTTTTTAATTTTTATTATTTTTAAATA
GTAAATCAAGATTTAATATAAAATATATTTTAATTTTTTA
Found at i:26171 original size:47 final size:47
Alignment explanation
Indices: 26120--26270 Score: 144
Period size: 47 Copynumber: 3.1 Consensus size: 47
26110 GTTTTTTAAT
*
26120 TTTTATTATTTTTAAATAGTAAATCAAGATTTAATGTAAAATATACA
1 TTTTATTATTTTTAAATAGTAAATCAAGATTTAATGTAAAATATAAA
* * * * *
26167 TTTTATT-TTTATTAAATAATAATTTATGATTTAGAATG-AAATAGTTTAAA
1 TTTTATTATTT-TTAAATAGTAAATCAAGATTT--AATGTAAA-A-TATAAA
* * *
26217 CTTTTATTATTTTTTAAATAGTAAATCAACATTTAATATAAAATATATA
1 -TTTTATTA-TTTTTAAATAGTAAATCAAGATTTAATGTAAAATATAAA
26266 TTTTA
1 TTTTA
26271 AATTTTTTAC
Statistics
Matches: 81, Mismatches: 14, Indels: 17
0.72 0.12 0.15
Matches are distributed among these distances:
46 3 0.04
47 24 0.30
48 8 0.10
49 9 0.11
50 8 0.10
51 10 0.12
52 16 0.20
53 3 0.04
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (47 bp):
TTTTATTATTTTTAAATAGTAAATCAAGATTTAATGTAAAATATAAA
Found at i:26439 original size:206 final size:202
Alignment explanation
Indices: 26016--26468 Score: 462
Period size: 206 Copynumber: 2.2 Consensus size: 202
26006 TTTTTTAATT
* * * *
26016 TTTATTATTTTTAAATAGTCATTCGAGAA-TTAATGT-AAA-ATATATTTTATTTTTTATTATTT
1 TTTATTATTTTTAAATAGTAATTC-AAAATTTAATATAAAATATATATTTTATTTTTTACTATTT
* * *
26078 TATAAAAAGTAATTTGAGATTTAATATAAAATGTTTTTTAATTTTTATTATTTTTAAATAGTAAA
65 TATAAAAAGTAACTTGAGATTTAATATAAAATGTTTTTGAATTTTTATTATTTTTAAATAATAAA
* * *
26143 TCAAGATTTAATGTAAAATATACATTTTATTTTTATTAAATAATAATTTATGATTTAGAATGAAA
130 TCAAGATTTAATATAAAATATAAATTTTATTTTTATTAAATAATAATTGATGATTTA-AATGAAA
26208 TAGTTTAAAC
194 TAGTTT-AAC
* *
26218 TTTTATTATTTTTTAAATAGTAAATCAACATTTAATATAAAATATATATTTTAAATTTTTTACTA
1 -TTTATTA-TTTTTAAATAGTAATTCAAAATTTAATATAAAATATATATTTT--ATTTTTTACTA
* *
26283 -TTT-TAAATAGTCACTTGAGATTTAATATAAATAT-TTTTTGAATTTTTATTATTTTTAAATAA
62 TTTTATAAAAAGTAACTTGAGATTTAATATAAA-ATGTTTTTGAATTTTTATTATTTTTAAATAA
* * * * *
26345 TAATTCAGGATTTATTATAAAATATTTTTAAATTTTTTATTATTTTTTAAATAGTAATTCGAT-A
126 TAAATCAAGATTTAATATAAAATA----TAAA--TTTTATT-TTTATTAAATAATAATT-GATGA
*
26409 TTT-AATCTAAAGTA-TTT-A-
183 TTTAAAT-GAAA-TAGTTTAAC
* *
26427 TTT-TTATTTTTAAATAATAATTTAAAATTTAATATAAAATAT
1 TTTATTATTTTTAAATAGTAATTCAAAATTTAATATAAAATAT
26469 TTTTAAAATT
Statistics
Matches: 209, Mismatches: 24, Indels: 31
0.79 0.09 0.12
Matches are distributed among these distances:
203 9 0.04
204 21 0.10
205 3 0.01
206 112 0.54
207 8 0.04
208 13 0.06
210 4 0.02
211 3 0.01
212 13 0.06
213 21 0.10
214 2 0.01
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (202 bp):
TTTATTATTTTTAAATAGTAATTCAAAATTTAATATAAAATATATATTTTATTTTTTACTATTTT
ATAAAAAGTAACTTGAGATTTAATATAAAATGTTTTTGAATTTTTATTATTTTTAAATAATAAAT
CAAGATTTAATATAAAATATAAATTTTATTTTTATTAAATAATAATTGATGATTTAAATGAAATA
GTTTAAC
Found at i:26457 original size:45 final size:44
Alignment explanation
Indices: 26376--26559 Score: 158
Period size: 45 Copynumber: 4.1 Consensus size: 44
26366 ATATTTTTAA
* * * * *
26376 ATTTTTTATTATTTTTTAAATAGTAATTCGATATTTAATCTAAAGT
1 ATTTTTT-TTA-TTTTTAAATAATAATTCAAGATTTAATATAAAAT
* *
26422 ATTTATTTTTATTTTTAAATAATAATTTAAAATTTAATATAAAAT
1 ATTT-TTTTTATTTTTAAATAATAATTCAAGATTTAATATAAAAT
*** * * *
26467 ATTTTTAAAATTGTTAAATAATAATCCAAGATTTACTAT-AAA-
1 ATTTTTTTTATTTTTAAATAATAATTCAAGATTTAATATAAAAT
* * *
26509 ATTTTTTTTATTTTTTAAAAAATAATGT-GAGATTTAATTTAAAAT
1 ATTTTTTTTA-TTTTTAAATAATAAT-TCAAGATTTAATATAAAAT
26554 ATTTTT
1 ATTTTT
26560 AATTTTTTAA
Statistics
Matches: 110, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
42 7 0.06
43 25 0.23
44 30 0.27
45 38 0.35
46 7 0.06
47 3 0.03
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (44 bp):
ATTTTTTTTATTTTTAAATAATAATTCAAGATTTAATATAAAAT
Found at i:26533 original size:43 final size:43
Alignment explanation
Indices: 26374--26570 Score: 173
Period size: 43 Copynumber: 4.5 Consensus size: 43
26364 AAATATTTTT
* * * *
26374 AAATTTTTTATTATTTTTTAAATAGTAATTCGATATTTAATCTA
1 AAATTTTTT-TTATTTTTTAAATAATAATTCAAGATTTAATATA
* *
26418 AAGTATTTATTTTTA-TTTTTAAATAATAATTTAAAATTTAATATA
1 AA--ATTT-TTTTTATTTTTTAAATAATAATTCAAGATTTAATATA
** * * * *
26463 AAATATTTTTAAAATTGTTAAATAATAATCCAAGATTTACTATA
1 AAAT-TTTTTTTATTTTTTAAATAATAATTCAAGATTTAATATA
* * *
26507 AAATTTTTTTTATTTTTTAAAAAATAATGT-GAGATTTAATTTA
1 AAATTTTTTTTATTTTTTAAATAATAAT-TCAAGATTTAATATA
* *
26550 AAATATTTTTAATTTTTTAAA
1 AAATTTTTTTTATTTTTTAAA
26571 ATAGTATTTA
Statistics
Matches: 124, Mismatches: 23, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
43 54 0.44
44 33 0.27
45 27 0.22
46 7 0.06
47 3 0.02
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (43 bp):
AAATTTTTTTTATTTTTTAAATAATAATTCAAGATTTAATATA
Found at i:26915 original size:2 final size:2
Alignment explanation
Indices: 26908--26955 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
26898 CGCTTGAGTA
26908 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
26950 TC TC TC
1 TC TC TC
26956 CTTTGTGATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:27348 original size:2 final size:2
Alignment explanation
Indices: 27341--27382 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
27331 AGTTATCTGA
*
27341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27383 TTATGAGCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:31579 original size:45 final size:45
Alignment explanation
Indices: 31529--31614 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
31519 TTTAAAATCA
*
31529 AAATTGATTTCAG-TTCAAA-ATTAGAATTTATAACTTGAAAATTTG
1 AAATTGATTT-AGATTCAAATATTA-AATTTATAACTTAAAAATTTG
* *
31574 AAATTGATTTTGATTCAAATTTTAAATTTATAACTTAAAAA
1 AAATTGATTTAGATTCAAATATTAAATTTATAACTTAAAAA
31615 AATATAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 1 0.03
45 32 0.89
46 3 0.08
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (45 bp):
AAATTGATTTAGATTCAAATATTAAATTTATAACTTAAAAATTTG
Found at i:31696 original size:17 final size:18
Alignment explanation
Indices: 31665--31699 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
31655 AATTAATAAT
*
31665 TTAAGATAAATATTTTAA
1 TTAAGATAAAAATTTTAA
31683 TTAA-ATAAAAATTTTAA
1 TTAAGATAAAAATTTTAA
31700 AATTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
TTAAGATAAAAATTTTAA
Found at i:32456 original size:16 final size:16
Alignment explanation
Indices: 32408--32456 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
32398 CATCGGATTA
* *
32408 TTTTT-AAATTATTAT
1 TTTTTAAAAATATTTT
**
32423 TTTTTAAAAATAACTT
1 TTTTTAAAAATATTTT
32439 TTTTTAAAAATATTTT
1 TTTTTAAAAATATTTT
32455 TT
1 TT
32457 AAACTCACAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 5 0.19
16 22 0.81
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTTAAAAATATTTT
Found at i:32770 original size:19 final size:19
Alignment explanation
Indices: 32746--32782 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32736 TTTTACACTA
* *
32746 AAAAAACTTTTTAATTTTG
1 AAAAAACTATTAAATTTTG
32765 AAAAAACTATTAAATTTT
1 AAAAAACTATTAAATTTT
32783 TTTTAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (19 bp):
AAAAAACTATTAAATTTTG
Found at i:32812 original size:29 final size:29
Alignment explanation
Indices: 32753--32812 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
32743 CTAAAAAAAC
* *
32753 TTTTTAATTTTGAAAAAACTATTAAATTT
1 TTTTTAATTTTGAAAAAACTATCAAACTT
*
32782 TTTTTAATTTATGAAAAAACTA-CGAACTT
1 TTTTTAATTT-TGAAAAAACTATCAAACTT
32811 TT
1 TT
32813 CCTTTTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (29 bp):
TTTTTAATTTTGAAAAAACTATCAAACTT
Found at i:33490 original size:2 final size:2
Alignment explanation
Indices: 33483--33520 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
33473 AATTATGGCC
33483 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33521 CTTATACTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:34682 original size:2 final size:2
Alignment explanation
Indices: 34677--34711 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
34667 GGTAAGAGGT
34677 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
34712 AGGAAGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:36169 original size:68 final size:68
Alignment explanation
Indices: 36094--36246 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
36084 AAAAGACAAT
* *
36094 TTAAAAATATTTATATGTATAC-ATTTAATTTACAAA-ATTA-ATTAA-ACTTTCACGTGCAAA-
1 TTAAAAATATTTATATGTA-ACAATTTAA-TTA-AAATATTATATTAAGAATTT-AAGTGCAAAC
36154 AAATTTAA
62 AAA-TTAA
* * *
36162 TTAAAAAT-TTTACATGTAACAAATTTAATTAAAATTTTATATTAAGAATTTAAGTGTAAACAAA
1 TTAAAAATATTTATATGTAAC-AATTTAATTAAAATATTATATTAAGAATTTAAGTGCAAACAAA
36226 TTAA
65 TTAA
36230 TTAAAAATATTTTATAT
1 TTAAAAATA-TTTATAT
36247 AATTCAAAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
66 5 0.07
67 15 0.21
68 38 0.54
69 7 0.10
70 6 0.08
ACGTcount: A:0.48, C:0.06, G:0.05, T:0.41
Consensus pattern (68 bp):
TTAAAAATATTTATATGTAACAATTTAATTAAAATATTATATTAAGAATTTAAGTGCAAACAAAT
TAA
Found at i:36173 original size:13 final size:14
Alignment explanation
Indices: 36151--36212 Score: 51
Period size: 13 Copynumber: 4.6 Consensus size: 14
36141 TTTCACGTGC
*
36151 AAAAAATTTA-ATT
1 AAAAATTTTACATT
36164 AAAAATTTTACATGT
1 AAAAATTTTACAT-T
36179 AACAAA-TTTA-ATT
1 AA-AAATTTTACATT
*
36192 -AAAATTTTATATT
1 AAAAATTTTACATT
*
36205 AAGAATTT
1 AAAAATTT
36213 AAGTGTAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
11 3 0.07
12 5 0.12
13 13 0.32
14 10 0.24
15 7 0.17
16 3 0.07
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (14 bp):
AAAAATTTTACATT
Found at i:36221 original size:27 final size:27
Alignment explanation
Indices: 36125--36200 Score: 89
Period size: 28 Copynumber: 2.8 Consensus size: 27
36115 CATTTAATTT
* * * * *
36125 ACAAAATTAATTAAACTTTCACGTGCA
1 ACAAATTTAATTAAAATTTTACATGTA
*
36152 AAAAATTTAATTAAAAATTTTACATGTA
1 ACAAATTTAATT-AAAATTTTACATGTA
36180 ACAAATTTAATTAAAATTTTA
1 ACAAATTTAATTAAAATTTTA
36201 TATTAAGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 19 0.46
28 22 0.54
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (27 bp):
ACAAATTTAATTAAAATTTTACATGTA
Found at i:36620 original size:2 final size:2
Alignment explanation
Indices: 36613--36650 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
36603 TGCGTGCCTG
36613 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36651 TAAATTGCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36760 original size:11 final size:11
Alignment explanation
Indices: 36746--36788 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
36736 ATATATATTT
36746 ATATAAATATA
1 ATATAAATATA
* *
36757 ATATAAAAATG
1 ATATAAATATA
36768 AT-TAAAATATA
1 ATAT-AAATATA
36779 ATATAAATAT
1 ATATAAATAT
36789 TTTAAAATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 1 0.04
11 24 0.92
12 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
ATATAAATATA
Found at i:37180 original size:25 final size:25
Alignment explanation
Indices: 37151--37198 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
37141 GAACTTGATT
37151 ATGCAACTTTTACAAGACCAGCCTG
1 ATGCAACTTTTACAAGACCAGCCTG
*
37176 ATGCAACTTTTACAAGACTAGCC
1 ATGCAACTTTTACAAGACCAGCC
37199 CGAAGTCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (25 bp):
ATGCAACTTTTACAAGACCAGCCTG
Found at i:42709 original size:12 final size:12
Alignment explanation
Indices: 42700--42724 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
42690 AAATTTTTCA
42700 ATTTATTTTTAG
1 ATTTATTTTTAG
42712 ATTTATTTTTAG
1 ATTTATTTTTAG
42724 A
1 A
42725 ATTCAATACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
ATTTATTTTTAG
Found at i:45042 original size:21 final size:20
Alignment explanation
Indices: 44989--45044 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
44979 TGAAGAGTAG
44989 TTTTGTATCGATACATTCAC
1 TTTTGTATCGATACATTCAC
* * *
45009 TTATGTATTGATACATTTAC
1 TTTTGTATCGATACATTCAC
45029 TGTTTGTATCGATACA
1 T-TTTGTATCGATACA
45045 AATTGTAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.46
Consensus pattern (20 bp):
TTTTGTATCGATACATTCAC
Found at i:48282 original size:13 final size:13
Alignment explanation
Indices: 48266--48295 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
48256 CTCTTCAAAA
48266 TTTTCCTTCTCTT
1 TTTTCCTTCTCTT
48279 TTTT-CTTCTCTT
1 TTTTCCTTCTCTT
48291 TTTTC
1 TTTTC
48296 ATACAAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTCCTTCTCTT
Found at i:48566 original size:17 final size:18
Alignment explanation
Indices: 48544--48582 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
48534 TTAAAATTTT
*
48544 TAAAAAAT-AAATTAAAA
1 TAAAAAATAAAATAAAAA
48561 TAAAAAATAAAATAAAAA
1 TAAAAAATAAAATAAAAA
48579 TAAA
1 TAAA
48583 CAAGATTAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAAAATAAAATAAAAA
Found at i:49255 original size:16 final size:17
Alignment explanation
Indices: 49224--49257 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
49214 AATTGAAGAG
*
49224 AGGGACAGAGAAGAGAA
1 AGGGAAAGAGAAGAGAA
49241 AGGGAAAGA-AAGAGAA
1 AGGGAAAGAGAAGAGAA
49257 A
1 A
49258 CAAGAGGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.59, C:0.03, G:0.38, T:0.00
Consensus pattern (17 bp):
AGGGAAAGAGAAGAGAA
Found at i:49780 original size:18 final size:18
Alignment explanation
Indices: 49759--49799 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
49749 TAAAAAAGAC
*
49759 AAAATAAATTAAAACATT
1 AAAATAAATAAAAACATT
* *
49777 AAAAAAAATAAAAACCTT
1 AAAATAAATAAAAACATT
49795 AAAAT
1 AAAAT
49800 TTAAAAAATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (18 bp):
AAAATAAATAAAAACATT
Found at i:50762 original size:184 final size:185
Alignment explanation
Indices: 50412--50791 Score: 627
Period size: 184 Copynumber: 2.1 Consensus size: 185
50402 GAATAAATTC
* *
50412 TTTGAACATGACTCGTTACGAGAATTCTATTTAGTAGCTCATTCAAGTGTTTATGAAAATATTCT
1 TTTGAATATGACTCGTTACGAGAATTCTATTTAGTAGCTCACTCAAGTGTTTATGAAAATATTCT
*
50477 CATTTGATAGTTATGCAACTAGATCTTAAACTTGAGATGCCAAGTTATCTTACATATGAATTGTC
66 CATTTGATAGTTATGCAACTAGATCTTAAACTTGAGATGCCAAGTTATCTTACATATAAATTGTC
* * *
50542 AAGTTTTAATTTCATAAGAATGGGTCACTTTAATTAATTCCTATGATAGGATGAT
131 AAGCTTTAATTTCATAAGAAGGGGTCACTTTAATTAATACCTATGATAGGATGAT
* * *
50597 TTTGGATATGACTCGTTACGAGAATTTTATTTGGTAGCTCACTCAAGTGTTTATGAAAATATTCT
1 TTTGAATATGACTCGTTACGAGAATTCTATTTAGTAGCTCACTCAAGTGTTTATGAAAATATTCT
** * *
50662 CATTTGATAGTTATGC-TTTAGTTCTTAAACTTGAGATGCCAAGTTATCTTACATATAAATTTTC
66 CATTTGATAGTTATGCAACTAGATCTTAAACTTGAGATGCCAAGTTATCTTACATATAAATTGTC
*
50726 ATGCTTTAATTTCATAAGAAGGGGTCACTTTAATTAATACCTATGATAGGATGAT
131 AAGCTTTAATTTCATAAGAAGGGGTCACTTTAATTAATACCTATGATAGGATGAT
50781 TTTGAATATGA
1 TTTGAATATGA
50792 AGTGAAGCAT
Statistics
Matches: 180, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
184 104 0.58
185 76 0.42
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (185 bp):
TTTGAATATGACTCGTTACGAGAATTCTATTTAGTAGCTCACTCAAGTGTTTATGAAAATATTCT
CATTTGATAGTTATGCAACTAGATCTTAAACTTGAGATGCCAAGTTATCTTACATATAAATTGTC
AAGCTTTAATTTCATAAGAAGGGGTCACTTTAATTAATACCTATGATAGGATGAT
Found at i:52336 original size:20 final size:20
Alignment explanation
Indices: 52291--52339 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
52281 CTTATAAATT
* *
52291 AATTTCTTTTATAATTTTAA
1 AATTTCTTTTATAAATATAA
**
52311 TTTTTCTTTTATAAATATAA
1 AATTTCTTTTATAAATATAA
52331 AATTTCTTT
1 AATTTCTTT
52340 ATTTATTTCA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (20 bp):
AATTTCTTTTATAAATATAA
Found at i:52542 original size:6 final size:6
Alignment explanation
Indices: 52531--52565 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
52521 TTATCTAAGT
* *
52531 TAAAAC TAAAAC TAAAAC TAAAAA GAAAAC TAAAA
1 TAAAAC TAAAAC TAAAAC TAAAAC TAAAAC TAAAA
52566 GGAAAAGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.71, C:0.11, G:0.03, T:0.14
Consensus pattern (6 bp):
TAAAAC
Found at i:52570 original size:12 final size:12
Alignment explanation
Indices: 52532--52571 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
52522 TATCTAAGTT
**
52532 AAAACTAAAACT
1 AAAACTAAAAAG
52544 AAAACTAAAAAG
1 AAAACTAAAAAG
*
52556 AAAACTAAAAGG
1 AAAACTAAAAAG
52568 AAAA
1 AAAA
52572 GGGGAAGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.72, C:0.10, G:0.07, T:0.10
Consensus pattern (12 bp):
AAAACTAAAAAG
Found at i:53919 original size:39 final size:40
Alignment explanation
Indices: 53851--54137 Score: 110
Period size: 39 Copynumber: 7.3 Consensus size: 40
53841 AGACATAGCT
* *
53851 TTTTTAAGTTTAGTTCCATATCTTCTATCAAAATTAAGTC
1 TTTTTAAGTTTAGTTCCATATCTTCTATCAAAACTAAGCC
* * *
53891 -TTTTAAGTTTAGTTTCATA-CATTTTATCAATACTAAGCC
1 TTTTTAAGTTTAGTTCCATATC-TTCTATCAAAACTAAGCC
** * * * **
53930 TTTTTAAGTCCAATGT-CGTATCTTCCATTGAAACTAAGTCC
1 TTTTTAAGTTTAGT-TCCATATCTTCTATCAAAACTAAG-CC
* * * * ** ** *
53971 --TTTAAGTTTAGTTTCATACCTTATGTTGAGGCCAAGCC
1 TTTTTAAGTTTAGTTCCATATCTTCTATCAAAACTAAGCC
* * * ** *
54009 TTTTGAAGTTTAGTTTCATA-CTT-TATGTCGAGGCCAAGCC
1 TTTTTAAGTTTAGTTCCATATCTTCTA--TCAAAACTAAGCC
* ** *
54049 -TTTTAAGTTTAGTT-CATACCTTCCGTCGAAACTAAG--
1 TTTTTAAGTTTAGTTCCATATCTTCTATCAAAACTAAGCC
* * * * **
54085 TTCGTTAGGTTTAGTTTCATATATTCTATCAAGGCTAAGCC
1 TT-TTTAAGTTTAGTTCCATATCTTCTATCAAAACTAAGCC
54126 TTTTTAAGTTTA
1 TTTTTAAGTTTA
54138 ATTTCATACC
Statistics
Matches: 185, Mismatches: 45, Indels: 34
0.70 0.17 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.15
39 89 0.48
40 61 0.33
41 6 0.03
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (40 bp):
TTTTTAAGTTTAGTTCCATATCTTCTATCAAAACTAAGCC
Found at i:53934 original size:79 final size:79
Alignment explanation
Indices: 53819--53989 Score: 184
Period size: 79 Copynumber: 2.2 Consensus size: 79
53809 ATCCCTTAGT
* * * * ** * *
53819 TTTAGTTTCGTACTTTTTATCGAGACATAGCTTTTTTAAGTTTAGT-TCCATATCTTCTATCAAA
1 TTTAGTTTCATACATTTTATCAAGACATAGCCTTTTTAAGTCCAATGT-CATATCTTCCATCAAA
* *
53883 ATTAAGTCTTTTAAG
65 ACTAAGTCCTTTAAG
* * **
53898 TTTAGTTTCATACATTTTATCAATAC-TAAGCCTTTTTAAGTCCAATGTCGTATCTTCCATTGAA
1 TTTAGTTTCATACATTTTATCAAGACAT-AGCCTTTTTAAGTCCAATGTCATATCTTCCATCAAA
53962 ACTAAGTCCTTTAAG
65 ACTAAGTCCTTTAAG
53977 TTTAGTTTCATAC
1 TTTAGTTTCATAC
53990 CTTATGTTGA
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 1 0.01
79 74 0.97
80 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (79 bp):
TTTAGTTTCATACATTTTATCAAGACATAGCCTTTTTAAGTCCAATGTCATATCTTCCATCAAAA
CTAAGTCCTTTAAG
Found at i:54022 original size:40 final size:39
Alignment explanation
Indices: 53971--54149 Score: 166
Period size: 40 Copynumber: 4.6 Consensus size: 39
53961 AACTAAGTCC
*
53971 TTTAAGTTTAGTTTCATACCTTATGTTGAGGCCAAGCCT
1 TTTAAGTTTAGTTTCATACCTTATGTCGAGGCCAAGCCT
*
54010 TTTGAAGTTTAGTTTCATACTTTATGTCGAGGCCAAGCCT
1 TTT-AAGTTTAGTTTCATACCTTATGTCGAGGCCAAGCCT
** ** *
54050 TTTAAGTTTAG-TTCATACCTTCCGTCGAAACTAAG--T
1 TTTAAGTTTAGTTTCATACCTTATGTCGAGGCCAAGCCT
* ** * * * *
54086 TCGTTAGGTTTAGTTTCATATATTCTATCAAGGCTAAGCCTT
1 T--TTAAGTTTAGTTTCATACCTTATGTCGAGGCCAAGCC-T
*
54128 TTTAAGTTTAATTTCATACCTT
1 TTTAAGTTTAGTTTCATACCTT
54150 CAGTCGAAAT
Statistics
Matches: 113, Mismatches: 20, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
36 2 0.02
38 27 0.24
39 28 0.25
40 54 0.48
42 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42
Consensus pattern (39 bp):
TTTAAGTTTAGTTTCATACCTTATGTCGAGGCCAAGCCT
Found at i:54125 original size:77 final size:79
Alignment explanation
Indices: 54016--54163 Score: 203
Period size: 77 Copynumber: 1.9 Consensus size: 79
54006 GCCTTTTGAA
* * *
54016 GTTTAGTTTCATACTTTATGTCGAGGCCAAGCC-TTTTAAGTTT-AGTTCATACCTTCCGTCGAA
1 GTTTAGTTTCATACTTTATATCAAGGCCAAGCCTTTTTAAGTTTAAGTTCATACCTTCAGTCGAA
54079 ACTAAGTTCGTTAG
66 ACTAAGTTCGTTAG
* * *
54093 GTTTAGTTTCATA-TATTCTATCAAGGCTAAGCCTTTTTAAGTTTAATTTCATACCTTCAGTCGA
1 GTTTAGTTTCATACT-TTATATCAAGGCCAAGCCTTTTTAAGTTTAAGTTCATACCTTCAGTCGA
*
54157 AATTAAG
65 AACTAAG
54164 GCTTTTAACC
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
76 1 0.02
77 27 0.44
78 10 0.16
79 23 0.38
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.41
Consensus pattern (79 bp):
GTTTAGTTTCATACTTTATATCAAGGCCAAGCCTTTTTAAGTTTAAGTTCATACCTTCAGTCGAA
ACTAAGTTCGTTAG
Found at i:54246 original size:38 final size:38
Alignment explanation
Indices: 54204--54310 Score: 101
Period size: 38 Copynumber: 2.8 Consensus size: 38
54194 AAAACCAAGC
54204 CATTAGAATTGGTTTCGTACTTTTCATCAAAATTGAGT
1 CATTAGAATTGGTTTCGTACTTTTCATCAAAATTGAGT
* * ** * *
54242 CATTAGGATCGGTTTTATAC-TTTCTGTCAAAGTTGAGT
1 CATTAGAATTGGTTTCGTACTTTTC-ATCAAAATTGAGT
* * *
54280 AATTA-AGATTAGTTTCGCACTTTTCATCAAA
1 CATTAGA-ATTGGTTTCGTACTTTTCATCAAA
54311 CCAAGTCCTA
Statistics
Matches: 52, Mismatches: 14, Indels: 6
0.72 0.19 0.08
Matches are distributed among these distances:
37 4 0.08
38 44 0.85
39 4 0.08
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (38 bp):
CATTAGAATTGGTTTCGTACTTTTCATCAAAATTGAGT
Found at i:56331 original size:2 final size:2
Alignment explanation
Indices: 56324--56357 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
56314 AACCCCTTTA
*
56324 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56358 TTCTATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:56415 original size:6 final size:6
Alignment explanation
Indices: 56402--56440 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
56392 AAAATTTGTA
*
56402 TTTA-T TTTATT TTTATT TTTATT TTTATT TTTATC TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA
56441 ACTTAAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:57054 original size:2 final size:2
Alignment explanation
Indices: 57047--57092 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
57037 TTCAATTCTA
57047 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57089 AT AT
1 AT AT
57093 TAATTCATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66588 original size:20 final size:20
Alignment explanation
Indices: 66563--66626 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
66553 CTTTCATTTA
66563 TATCAATACATA-TGAAAATG
1 TATCAATACATACT-AAAATG
*
66583 TATCAATACAATACTATAATG
1 TATCAATAC-ATACTAAAATG
* * *
66604 TATCGATACATCCTTAAATG
1 TATCAATACATACTAAAATG
66624 TAT
1 TAT
66627 TGATACATTG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 20 0.54
21 16 0.43
22 1 0.03
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (20 bp):
TATCAATACATACTAAAATG
Found at i:66605 original size:21 final size:21
Alignment explanation
Indices: 66563--66613 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
66553 CTTTCATTTA
66563 TATCAATAC-ATATGAAAATG
1 TATCAATACAATATGAAAATG
*
66583 TATCAATACAATACT-ATAATG
1 TATCAATACAATA-TGAAAATG
*
66604 TATCGATACA
1 TATCAATACA
66614 TCCTTAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 9 0.33
21 17 0.63
22 1 0.04
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (21 bp):
TATCAATACAATATGAAAATG
Found at i:70409 original size:13 final size:13
Alignment explanation
Indices: 70391--70417 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70381 ACATAATGCT
70391 TTGTATCGATACA
1 TTGTATCGATACA
70404 TTGTATCGATACA
1 TTGTATCGATACA
70417 T
1 T
70418 GTTCACTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:70525 original size:13 final size:13
Alignment explanation
Indices: 70507--70531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70497 CATGGCACAT
70507 TGTATCGATACAA
1 TGTATCGATACAA
70520 TGTATCGATACA
1 TGTATCGATACA
70532 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:70531 original size:33 final size:32
Alignment explanation
Indices: 70487--70551 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
70477 TACCATTATT
70487 TGTATCAATACATG-GCACATTGTATCGATACAA
1 TGTATCAATACATGAG-A-ATTGTATCGATACAA
*
70520 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCAATACATGA-GAATTGTATCGATACA
70552 TTGCTTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (32 bp):
TGTATCAATACATGAGAATTGTATCGATACAA
Found at i:76673 original size:20 final size:20
Alignment explanation
Indices: 76646--76702 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
76636 TACCCTAAGT
*
76646 GAAATGTATCAATACATG-G
1 GAAATGTATCGATACATGAG
76665 GACAATGTATCGATACATGAG
1 GA-AATGTATCGATACATGAG
*
76686 GAATTGTATCGATACAT
1 GAAATGTATCGATACAT
76703 CATGTCCAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 2 0.06
20 29 0.85
21 3 0.09
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (20 bp):
GAAATGTATCGATACATGAG
Found at i:78205 original size:27 final size:27
Alignment explanation
Indices: 78168--78246 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
78158 ATGATCATAG
*
78168 CATCAATAATATAAATAATACAAATAA
1 CATCATTAATATAAATAATACAAATAA
** *
78195 CA-CATTTAATATAGTTAACACAAATAA
1 CATCA-TTAATATAAATAATACAAATAA
* * *
78222 CATGATTAACATAAATAGTACAAAT
1 CATCATTAATATAAATAATACAAAT
78247 TATATAAATA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 2 0.05
27 37 0.93
28 1 0.03
ACGTcount: A:0.56, C:0.13, G:0.04, T:0.28
Consensus pattern (27 bp):
CATCATTAATATAAATAATACAAATAA
Found at i:78476 original size:20 final size:20
Alignment explanation
Indices: 78451--78490 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
78441 GGAATGATTG
78451 TAGTAACTTATTATTTAATA
1 TAGTAACTTATTATTTAATA
78471 TAGTAACTTATTATTTAATA
1 TAGTAACTTATTATTTAATA
78491 CTTGTTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (20 bp):
TAGTAACTTATTATTTAATA
Found at i:86907 original size:3 final size:3
Alignment explanation
Indices: 86899--86935 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
86889 CAAAAGCTCA
86899 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
86936 ATAGAAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:87330 original size:17 final size:18
Alignment explanation
Indices: 87297--87330 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
87287 ATTATTTAAT
*
87297 AAATTGATTTCATATAAC
1 AAATTAATTTCATATAAC
87315 AAATTAATTT-ATATAA
1 AAATTAATTTCATATAA
87331 TTTTGTGCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (18 bp):
AAATTAATTTCATATAAC
Found at i:89691 original size:13 final size:13
Alignment explanation
Indices: 89673--89732 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
89663 ATACATATCC
89673 TTGTATCGATACA
1 TTGTATCGATACA
89686 TTGTATCGATACA
1 TTGTATCGATACA
*
89699 -T-TAT-G---CT
1 TTGTATCGATACA
89706 TTGTATCGATACA
1 TTGTATCGATACA
89719 TTGTATCGATACA
1 TTGTATCGATACA
89732 T
1 T
89733 ACTCAATCGT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.08
10 2 0.05
11 3 0.08
12 1 0.03
13 28 0.72
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:89745 original size:33 final size:31
Alignment explanation
Indices: 89657--89752 Score: 129
Period size: 33 Copynumber: 3.0 Consensus size: 31
89647 ACCCTATAAA
*
89657 GTATCGATACATATCCTTGTATCGATACATT
1 GTATCGATACATATCATTGTATCGATACATT
*
89688 GTATCGATACATTATGCTTTGTATCGATACATT
1 GTATCGATACA-TAT-CATTGTATCGATACATT
*
89721 GTATCGATACATACTCAATCGTATCGATACAT
1 GTATCGATACATA-TC-ATTGTATCGATACAT
89753 GAAATTGGCA
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
31 11 0.19
32 6 0.10
33 41 0.71
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (31 bp):
GTATCGATACATATCATTGTATCGATACATT
Found at i:92031 original size:150 final size:150
Alignment explanation
Indices: 91760--92054 Score: 581
Period size: 150 Copynumber: 2.0 Consensus size: 150
91750 CAAAGAGATT
91760 CTCTCTCAAGGTTCACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCCTCTA
1 CTCTCTCAAGGTTCACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCCTCTA
91825 ACTAGGCTTGTGTTTGTGGGAATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATGA
66 ACTAGGCTTGTGTTTGTGGGAATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATGA
91890 CAATATGAACAAAAGTTTGC
131 CAATATGAACAAAAGTTTGC
*
91910 CTCTCTCAAGGTTTACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCCTCTA
1 CTCTCTCAAGGTTCACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCCTCTA
91975 ACTAGGCTTGTGTTTGTGGGAATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATGA
66 ACTAGGCTTGTGTTTGTGGGAATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATGA
92040 CAATATGAACAAAAG
131 CAATATGAACAAAAG
92055 CTCTTGAAAA
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 144 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (150 bp):
CTCTCTCAAGGTTCACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCCTCTA
ACTAGGCTTGTGTTTGTGGGAATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATGA
CAATATGAACAAAAGTTTGC
Found at i:92372 original size:13 final size:13
Alignment explanation
Indices: 92354--92379 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92344 CAATTTTTTG
92354 TGTATCGATACAT
1 TGTATCGATACAT
92367 TGTATCGATACAT
1 TGTATCGATACAT
92380 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:94487 original size:21 final size:20
Alignment explanation
Indices: 94458--94496 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
94448 GACTAGTGTG
*
94458 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGTGACCT
*
94479 GGGAGTGCCGGTCGTGAC
1 GGGACTGCCGGTCGTGAC
94497 TTGGTGGTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.10, C:0.26, G:0.44, T:0.21
Consensus pattern (20 bp):
GGGACTGCCGGTCGTGACCT
Found at i:94958 original size:13 final size:13
Alignment explanation
Indices: 94940--94977 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
94930 ATAATCCCCT
94940 TGTATCGATACAG
1 TGTATCGATACAG
*
94953 TGTATCGATACAT
1 TGTATCGATACAG
94966 TGTATCGATACA
1 TGTATCGATACA
94978 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:95211 original size:8 final size:8
Alignment explanation
Indices: 95179--95210 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
95169 CATCATTCAA
95179 CACAAAAT
1 CACAAAAT
95187 CACAAAAT
1 CACAAAAT
95195 CACAAAAT
1 CACAAAAT
*
95203 TACAAAAT
1 CACAAAAT
95211 TTAATCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.62, C:0.22, G:0.00, T:0.16
Consensus pattern (8 bp):
CACAAAAT
Found at i:97086 original size:15 final size:15
Alignment explanation
Indices: 97066--97096 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97056 ATTTCGTTTG
*
97066 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
97081 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
97096 G
1 G
97097 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:101181 original size:13 final size:13
Alignment explanation
Indices: 101163--101188 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101153 CAATTTTTTG
101163 TGTATCGATACAT
1 TGTATCGATACAT
101176 TGTATCGATACAT
1 TGTATCGATACAT
101189 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101205 original size:32 final size:33
Alignment explanation
Indices: 101143--101206 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
101133 TACAAGCCAA
**
101143 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
*
101176 TGTATCGATAC-ATACTTTGTGTATTGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
101207 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:105861 original size:29 final size:29
Alignment explanation
Indices: 105799--105854 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
105789 TGATCAACGG
105799 GCTGTTTCATCGTCCCAAACTACTTTGAA
1 GCTGTTTCATCGTCCCAAACTACTTTGAA
*
105828 GCTGTTTCATCGTCCCAAATTACTTTG
1 GCTGTTTCATCGTCCCAAACTACTTTG
105855 GGACTGTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (29 bp):
GCTGTTTCATCGTCCCAAACTACTTTGAA
Found at i:110497 original size:13 final size:13
Alignment explanation
Indices: 110479--110528 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
110469 AATCTAAAGT
*
110479 ACAAAATATAAAA
1 ACAAAATACAAAA
110492 ACAAAA-ACAAAA
1 ACAAAATACAAAA
* *
110504 AAAAAATGCAAAA
1 ACAAAATACAAAA
*
110517 GCAAAATA-AAAA
1 ACAAAATACAAAA
110529 GGGAACAACA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
12 14 0.47
13 16 0.53
ACGTcount: A:0.78, C:0.10, G:0.04, T:0.08
Consensus pattern (13 bp):
ACAAAATACAAAA
Found at i:110503 original size:19 final size:19
Alignment explanation
Indices: 110479--110528 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
110469 AATCTAAAGT
110479 ACAAAATATAAAAA-CAAAA
1 ACAAAATA-AAAAAGCAAAA
110498 ACAAAA-AAAAAATGCAAAA
1 ACAAAATAAAAAA-GCAAAA
*
110517 GCAAAATAAAAA
1 ACAAAATAAAAA
110529 GGGAACAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 5 0.19
18 1 0.04
19 16 0.59
20 5 0.19
ACGTcount: A:0.78, C:0.10, G:0.04, T:0.08
Consensus pattern (19 bp):
ACAAAATAAAAAAGCAAAA
Found at i:111858 original size:27 final size:28
Alignment explanation
Indices: 111805--111881 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 28
111795 CACGATTCAG
* *
111805 TGGCATTTCTTTTCAAAGTCCATAACTCTA
1 TGGCA-TTCTTTT-AAAGTCCACAACTCCA
*
111835 TGGCATTCTTTT-AAGTCCACAACTCCG
1 TGGCATTCTTTTAAAGTCCACAACTCCA
*
111862 TGGCATCCTTTTAAAGTCCA
1 TGGCATTCTTTTAAAGTCCA
111882 AAAGTCTACA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.55
28 7 0.17
29 7 0.17
30 5 0.12
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (28 bp):
TGGCATTCTTTTAAAGTCCACAACTCCA
Found at i:111894 original size:36 final size:35
Alignment explanation
Indices: 111847--111916 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 35
111837 GCATTCTTTT
*
111847 AAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCAA
1 AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCAA
* *
111883 AAGTCTACAACTCTGTGGCACCCTTTTAAGTCCA
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
111917 CAACTCCGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
35 7 0.23
36 24 0.77
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (35 bp):
AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCAA
Found at i:111918 original size:63 final size:63
Alignment explanation
Indices: 111819--111938 Score: 195
Period size: 63 Copynumber: 1.9 Consensus size: 63
111809 ATTTCTTTTC
* **
111819 AAAGTCCATAACTCTATGGCATTCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCA
1 AAAGTCCACAACTCTATGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCA
* *
111882 AAAGTCTACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAA
1 AAAGTCCACAACTCTATGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAA
111939 GTCTATAACT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (63 bp):
AAAGTCCACAACTCTATGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCA
Found at i:111921 original size:27 final size:27
Alignment explanation
Indices: 111883--112042 Score: 126
Period size: 28 Copynumber: 5.8 Consensus size: 27
111873 TAAAGTCCAA
*
111883 AAGTCTACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
* *
111910 AAGTCCACAACTCCGTGGCATCCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
* * *
111937 AAGTCTATAACT-TCGTGGCATCCTTTTT
1 AAGTCCACAACTCT-GTGGCA-CCCTTTT
* * * **
111965 AAGCCCACAAGTCAGTGGCACCCTTCCA
1 AAGTCCACAACTCTGTGGCACCCTT-TT
*
111993 AAGTCCACAACT-TCGTGGCATCCTTTTT
1 AAGTCCACAACTCT-GTGGCA-CCCTTTT
* * *
112021 AAGCCCACAAGTCAGTGGCACC
1 AAGTCCACAACTCTGTGGCACC
112043 ATTCCAAAAC
Statistics
Matches: 101, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
27 46 0.46
28 51 0.50
29 4 0.04
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (27 bp):
AAGTCCACAACTCTGTGGCACCCTTTT
Found at i:111982 original size:28 final size:28
Alignment explanation
Indices: 111951--112820 Score: 767
Period size: 28 Copynumber: 29.8 Consensus size: 28
111941 CTATAACTTC
**
111951 GTGGCATCCTTTTTAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* * * *
111979 GTGGCACCCTTCCAAAGTCCACAACTTC-
1 GTGGCATCCTTTCAAAGCCCACAA-GTCA
**
112007 GTGGCATCCTTTTTAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* *
112035 GTGGCA-CCATTCCAAAACCCACAAGTCA
1 GTGGCATCC-TTTCAAAGCCCACAAGTCA
* ** * *
112063 GTGGCACCCCTTTTTAGGCCCACAAGTTA
1 GTGGCA-TCCTTTCAAAGCCCACAAGTCA
* * *
112092 GTGGCATCATTTCAAAACCCACACAAGTCG
1 GTGGCATCCTTTC-AAAGCC-CACAAGTCA
* * * **
112122 GTGGTAACTCATTTGAAAGCCCACACAAGTTG
1 GTGG-CA-TCCTTTCAAAG-CC-CACAAGTCA
* *
112154 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
* * *
112186 GTGGAAACCTATTTCAAAG-CCACAATTCA
1 GTGGCATCC--TTTCAAAGCCCACAAGTCA
* **
112215 GTGACATCCTTTTTAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* * * *
112243 GTAGCACCCTTCCAAAGCTCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* ** *
112271 GTGGCACCCCTTTTTAAGCCTACAAGTCA
1 GTGGCA-TCCTTTCAAAGCCCACAAGTCA
* *
112300 GTGGCATCATTTCAAAGTCCACACAAGTCG
1 GTGGCATCCTTTCAAAG-CC-CACAAGTCA
* * *
112330 GTGGCAACTCATTTGAAAGCTCACACAAGTCG
1 GTGGC-A-TCCTTTCAAAGC-C-CACAAGTCA
* *
112362 GTGGCAACCCATTTCCAAGCCCACACAAGTC-
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
* *
112393 GATGGCAACCCATTTCAAAGCCCACAAGTAA
1 G-TGGC-ATCC-TTTCAAAGCCCACAAGTCA
*
112424 GTGGCATCCTTTCAAAGCCCATAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
*
112452 GTGGCATCCTTCTTAAAGCCCACAAGTCA
1 GTGGCATCCTT-TCAAAGCCCACAAGTCA
*
112481 GTGGCATCCTTCTCAAAGCCCACAAGCCA
1 GTGGCATCCTT-TCAAAGCCCACAAGTCA
*
112510 GTGGCATCCTTATCAAAGGCCACACAAATCA
1 GTGGCATCCTT-TCAAA-GCC-CACAAGTCA
* *
112541 GTGGTATCTTTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
*
112569 GGGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
112597 GTGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* * **
112625 GTGGCATCCTTCTCAAAGCTCATAAGTTT
1 GTGGCATCCTT-TCAAAGCCCACAAGTCA
*
112654 GTGGCATCCTTCTCAAAGCCCACAAGTCC
1 GTGGCATCCTT-TCAAAGCCCACAAGTCA
112683 GTGGCATCCTTCTCAAAGCCCACACAGATCA
1 GTGGCATCCTT-TCAAAGCCCACA-AG-TCA
* *
112714 GTGGTATCTTTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* *
112742 GTGGCGTCCTTTCAAAGCCCACAAGTTA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
*
112770 GTGGCATCCTTTCAAAGCCCGCAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
*
112798 GTGGCATCCTTTCAACGCCCACA
1 GTGGCATCCTTTCAAAGCCCACA
112821 CAAGTCAATG
Statistics
Matches: 700, Mismatches: 112, Indels: 60
0.80 0.13 0.07
Matches are distributed among these distances:
27 10 0.01
28 283 0.40
29 190 0.27
30 59 0.08
31 42 0.06
32 115 0.16
33 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
GTGGCATCCTTTCAAAGCCCACAAGTCA
Found at i:112145 original size:32 final size:32
Alignment explanation
Indices: 112098--112418 Score: 181
Period size: 32 Copynumber: 10.5 Consensus size: 32
112088 GTTAGTGGCA
* *
112098 TCATTTCAAAACCCACACAAGTCGGTGGTAAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
* * *
112130 TCATTTGAAAGCCCACACAAGTTGGTGGCAAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
*
112162 CCATTTCAAAGCCCACACAAGTCGGTGGAAAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
* * *
112194 -CTATTTCAAAG--C-CACAATTCAGT-GACA-
1 TC-ATTTCAAAGCCCACACAAGTCGGTGGAAAC
* ** * * *
112221 TCCTTTTTAAG-CC-CACAAGTCAGTAG-CAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
* * * * *
112250 -CCTTCCAAAG--CTCACAAGTCAGTGG-CAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
* * ** * * *
112278 CCCTTTTTAAG-CC-TACAAGTCAGTGG-CA-
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
* *
112306 TCATTTCAAAGTCCACACAAGTCGGTGGCAAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
* * *
112338 TCATTTGAAAGCTCACACAAGTCGGTGGCAAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
* * * *
112370 CCATTTCCAAGCCCACACAAGTCGATGGCAAC
1 TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
*
112402 CCATTTCAAAGCCCACA
1 TCATTTCAAAGCCCACA
112419 AGTAAGTGGC
Statistics
Matches: 238, Mismatches: 39, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
27 7 0.03
28 46 0.19
29 33 0.14
30 13 0.05
31 2 0.01
32 137 0.58
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (32 bp):
TCATTTCAAAGCCCACACAAGTCGGTGGAAAC
Found at i:112158 original size:62 final size:64
Alignment explanation
Indices: 112083--112206 Score: 173
Period size: 64 Copynumber: 2.0 Consensus size: 64
112073 TTTTTAGGCC
* * *
112083 CACAAGTTAGTGGC-A-TCATTTCAAAACCCACACAAGTCGGTGGTAA-CTCATTTGAAAGCCCA
1 CACAAGTTAGTGGCAACCCATTTCAAAACCCACACAAGTCGGTGGAAACCT-ATTTCAAAGCCCA
* *
112145 CACAAGTTGGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGAAACCTATTTCAAAGCC
1 CACAAGTTAGTGGCAACCCATTTCAAAACCCACACAAGTCGGTGGAAACCTATTTCAAAGCC
112207 ACAATTCAGT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 13 0.24
63 1 0.02
64 38 0.70
65 2 0.04
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (64 bp):
CACAAGTTAGTGGCAACCCATTTCAAAACCCACACAAGTCGGTGGAAACCTATTTCAAAGCCCA
Found at i:112369 original size:208 final size:207
Alignment explanation
Indices: 111970--112820 Score: 825
Period size: 208 Copynumber: 4.2 Consensus size: 207
111960 TTTTTAAGCC
* * * * * **
111970 CACAAGTCAGTGGC-ACCCTTCCAAAGTCCACAACTTC-GTGGCATCCTTTTTAAGCCCACAAGT
1 CACAAGTCGGTGGCAACCATTTCAAAGCCCACAA-GTCAGTGGCATCCTTTCAAAGCCCACAAGT
* * ** * *
112033 CAGTGGCACCATTC-CAAAACCCACAAGTCAGTGGCACCCCTT-TTTAGGCCCACAAGTTAGTGG
65 CAGTGGCACCCTTCTCAAAGCCCACAAGTCAGTGGCA-CCCTTCTCAAAGCCCACAAGTCAGTGG
* * * *
112096 CATCATTTCAAAACCCACACAAGTCGGTGGTAACTCATTTGAAAGCCCACACAAGTTGGTGGCAA
129 CATCATTTC-AAAGCCACACAAGTCAGTGGCAACTCATTTGAAAG-CCACACAAGTCGGTGGCAA
112161 CCCATTTCAAAGCCCA
192 CCCATTTCAAAGCCCA
* * * **
112177 CACAAGTCGGTGGAAACCTATTTCAAAG-CCACAATTCAGTGACATCCTTTTTAAGCCCACAAGT
1 CACAAGTCGGTGGCAACC-ATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT
* * ** *
112241 CAGTAGCACCCTTC-CAAAGCTCACAAGTCAGTGGCACCCCTT-TTTAAGCCTACAAGTCAGTGG
65 CAGTGGCACCCTTCTCAAAGCCCACAAGTCAGTGGCA-CCCTTCTCAAAGCCCACAAGTCAGTGG
*
112304 CATCATTTCAAAGTCCACACAAGTCGGTGGCAACTCATTTGAAAGCTCACACAAGTCGGTGGCAA
129 CATCATTTCAAAG-CCACACAAGTCAGTGGCAACTCATTTGAAAGC-CACACAAGTCGGTGGCAA
*
112369 CCCATTTCCAAGCCCA
192 CCCATTTCAAAGCCCA
* * *
112385 CACAAGTCGATGGCAACCCATTTCAAAGCCCACAAGTAAGTGGCATCCTTTCAAAGCCCATAAGT
1 CACAAGTCGGTGGCAA-CCATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT
* * * *
112450 CAGTGGCATCCTTCTTAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCACAAGCCAGTGGC
65 CAGTGGCACCCTTCTCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCCCACAAGTCAGTGGC
* * * * *
112515 ATCCTTATCAAAGGCCACACAAATCAGTGG-TA-TCTTTTCAAAGCC-CACAAGTCAGG-GGC-A
130 ATCATT-TCAAA-GCCACACAAGTCAGTGGCAACTCATTTGAAAGCCACACAAGTC-GGTGGCAA
*
112575 TCC-TTTCAAAG-CC-
192 CCCATTTCAAAGCCCA
* * * *
112588 CACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCTCATAAGT
1 CACAAGTCGGTGGCAACCATTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGT
** * * *
112652 TTGTGGCATCCTTCTCAAAGCCCACAAGTCCGTGGCATCCTTCTCAAAGCCCACACAGATCAGTG
65 CAGTGGCACCCTTCTCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCCCACA-AG-TCAGTG
* * * * * ** *
112717 GTATCTTTTCAAAGCC-CACAAGTCAGTGGC--GTCCTTTCAAAGCC-CACAAGTTAGTGGC-AT
128 GCATCATTTCAAAGCCACACAAGTCAGTGGCAACTCATTTGAAAGCCACACAAGTCGGTGGCAAC
112777 CC-TTTCAAAG-CC-
193 CCATTTCAAAGCCCA
* * * *
112789 CGCAAGTCAGTGGCATCC-TTTCAACGCCCACA
1 CACAAGTCGGTGGCAACCATTTCAAAGCCCACA
112821 CAAGTCAATG
Statistics
Matches: 567, Mismatches: 59, Indels: 42
0.85 0.09 0.06
Matches are distributed among these distances:
200 1 0.00
201 107 0.19
202 70 0.12
203 20 0.04
204 13 0.02
205 7 0.01
206 3 0.01
207 30 0.05
208 187 0.33
209 65 0.11
210 44 0.08
211 19 0.03
212 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (207 bp):
CACAAGTCGGTGGCAACCATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTC
AGTGGCACCCTTCTCAAAGCCCACAAGTCAGTGGCACCCTTCTCAAAGCCCACAAGTCAGTGGCA
TCATTTCAAAGCCACACAAGTCAGTGGCAACTCATTTGAAAGCCACACAAGTCGGTGGCAACCCA
TTTCAAAGCCCA
Found at i:112606 original size:173 final size:171
Alignment explanation
Indices: 111951--112808 Score: 732
Period size: 173 Copynumber: 4.9 Consensus size: 171
111941 CTATAACTTC
** * * * * ** *
111951 GTGGCATCCTT-TTTAAGCCCACAAGTCAGTGGCACCCTTCCAAAGTCCACA-ACTTC-GTGGCA
1 GTGGCATCCTTCTCAAAGCCCACAAG-CCGTGGCATCCTTTCAAAGGCCACACAAATCAGTGGTA
* * * *
112013 TCCTTTT-TAAGCCCACAAGTCAGTGGCA-CCATTCCAAAACCCACAAGTCAGTGGCACCCCTTT
65 T-CTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCA-TCCTTT
** * * * * * *
112076 TTAGGCCCACAAGTTAGTGGCATCATT-TCAAAACCCACACAAGTCG
127 CAAAGCCCACAAGTCAGTGGCATCCTTCT-TAAAGCC-CACAAGTCA
* * * ** * * * *
112122 GTGGTAACTCATT-TGAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGG-CA-TCCTTCTCAAAG-CC-CACAAG-CCGTGGC-ATCC-TTTCAAAGGCCACACAAATCA
* * * * ** * *
112186 GTGGAAACCTATTTCAAAG-CCACAATTCAGTGACATCCTTTTTAAGCCCACAAGTCAGTAGCAC
59 GTGG-TATCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT
* * * * *
112250 CCTTCCAAAGCTCACAAGTCAGTGGCACCCCTT-TTTAAGCCTACAAGTCA
122 CCTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTCTTAAAGCCCACAAGTCA
* * * * * *
112300 GTGGCATCATT-TCAAAGTCCACACAAGTCGGTGGCAACTCATTTGAAA-GCTCACACAAGTCGG
1 GTGGCATCCTTCTCAAAG-CC-CACAAG-CCGTGGC-A-TCCTTTCAAAGGC-CACACAAATCAG
* * * * * *
112363 TGGCAACCCATTTCCAAGCCCACACAAGTC-GATGGCAACCCATTTCAAAGCCCACAAGTAAGTG
60 TGG-TA-TCTTTTCAAAG-CC-CACAAGTCAG-TGGC-ATCC-TTTCAAAGCCCACAAGTCAGTG
*
112427 GCATCCTTTCAAAGCCCATAAGTCAGTGGCATCCTTCTTAAAGCCCACAAGTCA
118 GCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTCTTAAAGCCCACAAGTCA
112481 GTGGCATCCTTCTCAAAGCCCACAAGCCAGTGGCATCCTTATCAAAGGCCACACAAATCAGTGGT
1 GTGGCATCCTTCTCAAAGCCCACAAGCC-GTGGCATCCTT-TCAAAGGCCACACAAATCAGTGGT
*
112546 ATCTTTTCAAAGCCCACAAGTCAGGGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
64 ATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
* * * **
112611 AAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCTCATAAGTTT
129 AAGCCCACAAGTCAGTGGCATCCTTCTTAAAGCCCACAAGTCA
* *
112654 GTGGCATCCTTCTCAAAGCCCACAAGTCCGTGGCATCCTTCTCAAAGCCCACACAGATCAGTGGT
1 GTGGCATCCTTCTCAAAGCCCACAAG-CCGTGGCATCCTT-TCAAAGGCCACACAAATCAGTGGT
* *
112719 ATCTTTTCAAAGCCCACAAGTCAGTGGCGTCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCA
64 ATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
*
112784 AAGCCCGCAAGTCAGTGGCATCCTT
129 AAGCCCACAAGTCAGTGGCATCCTT
112809 TCAACGCCCA
Statistics
Matches: 574, Mismatches: 84, Indels: 56
0.80 0.12 0.08
Matches are distributed among these distances:
171 4 0.01
172 1 0.00
173 222 0.39
174 7 0.01
175 24 0.04
176 65 0.11
177 24 0.04
178 21 0.04
179 61 0.11
180 62 0.11
181 77 0.13
182 6 0.01
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (171 bp):
GTGGCATCCTTCTCAAAGCCCACAAGCCGTGGCATCCTTTCAAAGGCCACACAAATCAGTGGTAT
CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
GCCCACAAGTCAGTGGCATCCTTCTTAAAGCCCACAAGTCA
Found at i:113096 original size:48 final size:48
Alignment explanation
Indices: 112968--113077 Score: 193
Period size: 48 Copynumber: 2.3 Consensus size: 48
112958 GGCACCTTTA
112968 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACACTATCCACTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACACTATCCACTTTTCCC
* *
113016 TGAGCTCAATGTCGCTGGCCTTGAATCAGCACATTATCCACTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACACTATCCACTTTTCCC
*
113064 TTAGCTCGATGTCG
1 TTAGCTCAATGTCG
113078 TTAGCCTTCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.20, C:0.31, G:0.17, T:0.32
Consensus pattern (48 bp):
TTAGCTCAATGTCGCTGGCCTTGAATCAGCACACTATCCACTTTTCCC
Found at i:120565 original size:29 final size:29
Alignment explanation
Indices: 120523--120579 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
120513 GGGCATGATT
120523 AGTGTCCGCGATATGCCCGTGTGCAGATC
1 AGTGTCCGCGATATGCCCGTGTGCAGATC
* * *
120552 AGTGTCTGTGATATGTCCGTGTGCAGAT
1 AGTGTCCGCGATATGCCCGTGTGCAGAT
120580 TCAAGGCCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.30
Consensus pattern (29 bp):
AGTGTCCGCGATATGCCCGTGTGCAGATC
Found at i:120696 original size:48 final size:48
Alignment explanation
Indices: 120643--120751 Score: 155
Period size: 48 Copynumber: 2.3 Consensus size: 48
120633 TAAGGTCAAT
* * * * *
120643 GACATTGAGCTAAGGGGAAAGTGGACAATGTGTTGATTCAAAGCTAGC
1 GACATTGAGCTAAGAGAAAAGTGGACAATGTGCTGATTCAAAGCCAAC
* *
120691 GACATTGAGCTAAGAGAAAAGTGGATAATGTGCTGATTCAAGGCCAAC
1 GACATTGAGCTAAGAGAAAAGTGGACAATGTGCTGATTCAAAGCCAAC
120739 GACATTGAGCTAA
1 GACATTGAGCTAA
120752 TAAAGGTGCC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (48 bp):
GACATTGAGCTAAGAGAAAAGTGGACAATGTGCTGATTCAAAGCCAAC
Found at i:120922 original size:28 final size:28
Alignment explanation
Indices: 120858--122422 Score: 983
Period size: 28 Copynumber: 55.4 Consensus size: 28
120848 TTTTCAAAAA
* *
120858 AAAGG-TGCCATTAACTTGTGTTGGCTTTG
1 AAAGGATGCCACTGACTTGTG--GGCTTTG
120887 -AAGAGATGCCACTGACTTGTGGGCTTTG
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
* *
120915 AAAGGATGCCACTAACTCGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * **
120943 AAAGGGTGCTACTGACTTGTCAGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
120971 AAAGGATGCCACTGACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
120999 AAAGGGTACCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
121027 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
121055 AAAAGTGTTGCCACCGACTTGTGGGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
*
121085 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
*
121114 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
121142 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
121170 AAAAGTGTTGCCACTGACTCGTGGGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
* **
121200 AAAGGATG----TGGGCTT-T--G---AA
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* ** *
121219 AAGGATTGCCACCGACTCGTGTGGGCTTTG
1 AAAGGATGCCACTGACT--TGTGGGCTTTG
*
121249 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
121278 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
121306 AAAAGTGTTGCCACCGACTCGTGGGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
*
121336 AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* ** *
121364 AAAAGGGTTGCCACCAACTCGTATGGGCTTTG
1 -AAA-GGATGCCACTGACT--TGTGGGCTTTG
* *
121396 AAAAGAGTGACACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
*
121425 AAA-GAGTGCCACTGACTTATGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
**
121453 AAA-GAGTGCCACTGACTTGTAAGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
121481 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
121509 AAAAGTGTTGCCACCGACTCGTGTGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
* *
121539 AAAAGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
121567 AAAAGGGTTGCCA-TCGACTCGTGTGGGCTTTG
1 -AAA-GGATGCCACT-GACT--TGTGGGCTTTG
* * *
121599 AAAAGA-GTCCATTAACTTGTGGGCTTTG
1 AAAGGATG-CCACTGACTTGTGGGCTTTG
* * * * *
121627 AAAGGGTGCCACTAATTTATGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
121655 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
121683 AAAGGGTGCCATTGATTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
121711 AAATGGGTTACCACCGACTTGTGGGCTTT-
1 AAA--GGATGCCACTGACTTGTGGGCTTTG
* *
121740 AAAAGAGTGCCACTGACTTGTGGGCTTTA
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
* *
121769 AAAGGGTGCCACTGATTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
121797 AAATGGGTTGCCACCGACTTGTGTGGGCTTTCA
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTT-G
* * *
121830 AATAGGTTGCCACCGACTTGTGTGGGCTTTA
1 AA-AGGATGCCACTGAC-T-TGTGGGCTTTG
* **
121861 AAAGGGTGCCACTGACTTGTGGGCTTAA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* ** *
121889 AAAGGATGCCAC-GAAGTTGTGAAC-TTA
1 AAAGGATGCCACTG-ACTTGTGGGCTTTG
* * ** *
121916 AAAGGGTGCCACGGTGTTGTGGACTTT-
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
121943 AAAGGGTACCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
121971 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
121999 AAAGG-TACCACGGAGTTTTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
122025 AAACGATGCCACGGAGTTGTAGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
122053 AAAGGGTGACACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
122081 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
122109 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
122137 AAAGGGTGCCACGGAGTTGTAGACTTT-
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
122164 AAAGGGTACCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
122191 AAAAGATGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
122219 AAAGGGTGCCA-TGGAGTTGTGGACTTT-
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* * * * * *
122246 AAAGGGTACCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
122273 AAACGATGCCACAGAGTTATGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
122301 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
122329 AAAGGGTGCCACAGAGTTATGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
122356 AAAGGATGCCACGGAGTTGTGGACTCTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
122384 AAAGGGTGCCAC-GGCGTTGTGGACTTTA
1 AAAGGATGCCACTGAC-TTGTGGGCTTTG
122412 AAAGGATGCCA
1 AAAGGATGCCA
122423 TGGAGTTATG
Statistics
Matches: 1300, Mismatches: 172, Indels: 129
0.81 0.11 0.08
Matches are distributed among these distances:
19 5 0.00
22 4 0.00
24 3 0.00
25 4 0.00
26 11 0.01
27 188 0.14
28 719 0.55
29 107 0.08
30 170 0.13
31 29 0.02
32 57 0.04
33 2 0.00
34 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:121196 original size:58 final size:57
Alignment explanation
Indices: 120858--122422 Score: 1102
Period size: 56 Copynumber: 27.7 Consensus size: 57
120848 TTTTCAAAAA
* * * *
120858 AAAGG-TGCCATTAACTTGTGTTGGCTTTGAAGA-GATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTG--GGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * **
120915 AAAGGATGCCACTAACTCGTGGGCTTTG-AAAGGGTGCTACTGACTTGTCAGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
120971 AAAGGATGCCACTGACTTATGGGCTTTG-AAAGGGTACCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
121027 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAG-GGTGCCACTGACTTGTGGGCTTTG
*
121085 AAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
121142 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACTGACTCGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAG-GGTGCCACTGACTTGTGGGCTTTG
* *
121200 -AA--A-G-----GA--TGTGGGCTTTGAAAAGGATTGCCACCGACTCGTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG-GTGCCACTGACT--TGTGGGCTTTG
* *
121249 AAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
121306 AAAAGTGTTGCCACCGACTCGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* ** * * *
121364 AAAAGGGTTGCCACCAACTCGTATGGGCTTTGAAAAGAGTGACACTGACTTGTGGGCTTTG
1 -AAA-GGATGCCACTGACT--TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * **
121425 AAA-GAGTGCCACTGACTTATGGGCTTTG-AAAGAGTGCCACTGACTTGTAAGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
121481 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTGTGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAG-GGTGCCACTGACTTGTGGGCTTTG
* *
121539 AAAAGATGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCA-TCGACTCGTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGG-TGCCACT-GACT--TGTGGGCTTTG
* * * * * * *
121599 AAAAGA-GTCCATTAACTTGTGGGCTTTG-AAAGGGTGCCACTAATTTATGGGCTTTA
1 AAAGGATG-CCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
121655 AAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCATTGATTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
121711 AAATGGGTTACCACCGACTTGTGGGCTTT-AAAAGAGTGCCACTGACTTGTGGGCTTTA
1 AAA--GGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
121769 AAAGGGTGCCACTGATTTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTCA
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGG-TGCCACTGAC-T-TGTGGGCTTT-G
* * **
121830 AATAGGTTGCCACCGACTTGTGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTAA
1 AA-AGGATGCCACTGAC-T-TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* ** * ** *
121889 AAAGGATGCCAC-GAAGTTGTGAAC-TT-AAAAGGGTGCCACGGTGTTGTGGACTTT-
1 AAAGGATGCCACTG-ACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * * *
121943 AAAGGGTACCACGGAGTTGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * * * * * *
121999 AAAGG-TACCACGGAGTTTTGGAC-TT-AAAACGATGCCACGGAGTTGTAGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * * *
122053 AAAGGGTGACACGGAGTTGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * *
122109 AAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGGTGCCACGGAGTTGTAGACTTT-
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * * * * *
122164 AAAGGGTACCACGGAGTTGTGGAC-TT-AAAAAGATGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * *
122219 AAAGGGTGCCA-TGGAGTTGTGGACTTT--AAAGGGTACCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACT-GACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * * *
122273 AAACGATGCCACAGAGTTATGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * * * * *
122329 AAAGGGTGCCACAGAGTTATGGAC-TT-AAAAGGATGCCACGGAGTTGTGGACTCTA
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
122384 AAAGGGTGCCAC-GGCGTTGTGGACTTT-AAAAGGATGCCA
1 AAAGGATGCCACTGAC-TTGTGGGCTTTGAAAAGGGTGCCA
122423 TGGAGTTATG
Statistics
Matches: 1306, Mismatches: 138, Indels: 129
0.83 0.09 0.08
Matches are distributed among these distances:
46 1 0.00
47 27 0.02
49 12 0.01
50 2 0.00
52 1 0.00
54 107 0.08
55 226 0.17
56 385 0.29
57 79 0.06
58 263 0.20
59 57 0.04
60 70 0.05
61 39 0.03
62 20 0.02
63 7 0.01
64 10 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.28
Consensus pattern (57 bp):
AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG
Found at i:121212 original size:17 final size:18
Alignment explanation
Indices: 121190--121224 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
121180 CCACTGACTC
121190 GTGGGCTTTG-AAAGGAT
1 GTGGGCTTTGAAAAGGAT
121207 GTGGGCTTTGAAAAGGAT
1 GTGGGCTTTGAAAAGGAT
121225 TGCCACCGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.26, C:0.06, G:0.40, T:0.29
Consensus pattern (18 bp):
GTGGGCTTTGAAAAGGAT
Found at i:121228 original size:47 final size:48
Alignment explanation
Indices: 121159--121251 Score: 145
Period size: 47 Copynumber: 1.9 Consensus size: 48
121149 GCCACTGACT
*
121159 TGTGGGCTTTGAAAAGTGTTGCCACTGACTC-GTGGGCTTTGAAAGGA
1 TGTGGGCTTTGAAAAGTGTTGCCACCGACTCGGTGGGCTTTGAAAGGA
121206 TGTGGGCTTTGAAAAG-GATTGCCACCGACTCGTGTGGGCTTTGAAA
1 TGTGGGCTTTGAAAAGTG-TTGCCACCGACTCG-GTGGGCTTTGAAA
121252 AGAGTGCCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
46 1 0.02
47 28 0.67
49 13 0.31
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (48 bp):
TGTGGGCTTTGAAAAGTGTTGCCACCGACTCGGTGGGCTTTGAAAGGA
Found at i:121504 original size:203 final size:204
Alignment explanation
Indices: 121206--121900 Score: 884
Period size: 203 Copynumber: 3.4 Consensus size: 204
121196 TTTGAAAGGA
* *
121206 TGTGGGCTTTGAAAAGGATTGCCACCGACTCGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
1 TGTGGGCTTTG-AAA-GAGTGCCACCGACT-GTATGGGCTTT-AAAAGAGTGCCACTGACTTGTG
121271 GGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTGGGCTTTG
62 GGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTGGGCTTTG
* * *
121336 AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCACCAACTCGTATGGGCTTTGAAAAG
127 AAAAGATGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG
*
121401 AGTGACACTGACT
192 AGTGCCACTGACT
* * **
121414 TGTGGGCTTTGAAAGAGTGCCACTGACT-TATGGGCTTTGAAAGAGTGCCACTGACTTGTAAGCT
1 TGTGGGCTTTGAAAGAGTGCCACCGACTGTATGGGCTTTAAAAGAGTGCCACTGACTTGTGGGCT
*
121478 TTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTGTGCTTTGAAAA
66 TTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTGGGCTTTGAAAA
*
121543 GATGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCATCGACTCGTGTGGGCTTTGAAAAGAGT-
131 GATGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAGTG
* *
121607 CCATTAACT
196 CCACTGACT
* * * * * *
121616 TGTGGGCTTTGAAAGGGTGCCA-CTAATTTATGGGCTTTAAAAGGGTGCCACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAGAGTGCCACCGACTGTATGGGCTTTAAAAGAGTGCCACTGACTTGTGGGCT
* * * * * * *
121680 TTGAAAGGGTGCCATTGATTTGTGGGCTTTGAAATGGGTTACCACCGACTTGTGGGCTTT-AAAA
66 TTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTGGGCTTTGAAAA
* * * * *
121744 GAGTGCCACTGACTTGTGGGCTTT-AAAAGGG-TGCCACTGA-T-TTGTGGGCTTTGAAATGGGT
131 GA-TGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAG-
*
121805 TGCCACCGACTT
194 TGCCACTGAC-T
* * * *
121817 GTGTGGGCTTTCAAATAGGTTGCCACCGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTG
1 -TGTGGGCTTTGAAAGA-G-TGCCACCGAC-TGTATGGGCTTTAAAAGAGTGCCACTGACTTGTG
**
121882 GGCTTAAAAAGGATGCCAC
62 GGCTTTGAAAGGATGCCAC
121901 GAAGTTGTGA
Statistics
Matches: 425, Mismatches: 52, Indels: 22
0.85 0.10 0.04
Matches are distributed among these distances:
198 16 0.04
199 2 0.00
200 12 0.03
201 16 0.04
202 143 0.34
203 148 0.35
204 14 0.03
205 2 0.00
206 58 0.14
207 3 0.01
208 11 0.03
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (204 bp):
TGTGGGCTTTGAAAGAGTGCCACCGACTGTATGGGCTTTAAAAGAGTGCCACTGACTTGTGGGCT
TTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTGGGCTTTGAAAA
GATGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAGTG
CCACTGACT
Found at i:121921 original size:55 final size:56
Alignment explanation
Indices: 121615--122497 Score: 940
Period size: 55 Copynumber: 15.8 Consensus size: 56
121605 GTCCATTAAC
* * ** * * * ** *
121615 TTGTGGGCTTTGAAAGGGTGCCACTAATTTATGGGCTTTAAAAGGGTGCCACTAAC
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * ** * * * * * *
121671 TTGTGGGCTTTGAAAGGGTGCCATTGATTTGTGGGCTTTGAAATGGGTTACCACCGAC
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGG-TGCCACGGAG
* * * * * * *
121729 TTGTGGGCTTTAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGAT
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * * * * * * *
121785 TTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTCAAATAGGTTGCCACCGACT
1 TTGTGGACTTT-AAAAGGG-TGCCACGGA-GT-TGTGGACTTT-AAA-AGGGTGCCACGGA-G
* * * * * * *
121848 TGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTAAAAAGGATGCCACGAAG
1 T-TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * *
121905 TTGTGAAC-TTAAAAGGGTGCCACGGTGTTGTGGACTTT-AAAGGGTACCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
*
121959 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA-GGTACCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * * * *
122014 TTTTGGAC-TTAAAACGATGCCACGGAGTTGTAGACTTTAAAAGGGTGACACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
122069 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* *
122125 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTAGACTTT-AAAGGGTACCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * *
122180 TTGTGGAC-TTAAAAAGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCATGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * * *
122235 TTGTGGACTTT-AAAGGGTACCACGGAGTTGTGGAC-TTAAAACGATGCCACAGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* *
122289 TTATGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * * *
122345 TTATGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTCTAAAAGGGTGCCACGGCG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* * * ** *
122400 TTGTGGACTTTAAAAGGATGCCATGGAGTTATGGACTTTAAAAGAATGCCATGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
* *
122456 TTGTGGAC-TTAAAAAGATGCCACGGAGTTGTGGACTTTAAAA
1 TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
122498 ACAAATGCCA
Statistics
Matches: 723, Mismatches: 85, Indels: 39
0.85 0.10 0.05
Matches are distributed among these distances:
54 103 0.14
55 260 0.36
56 218 0.30
57 18 0.02
58 60 0.08
59 4 0.01
60 19 0.03
61 4 0.01
62 19 0.03
63 8 0.01
64 10 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (56 bp):
TTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAG
Found at i:122300 original size:248 final size:247
Alignment explanation
Indices: 121850--122497 Score: 949
Period size: 248 Copynumber: 2.6 Consensus size: 247
121840 CACCGACTTG
* * * * * * *
121850 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTAAAAAGGATGCCACGAAGTTGTGAACTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTG-ACTT
* * * * *
121915 AAAAGGGTGCCACGGTGTTGTGGACTTTAAAGGGTACCACGGAGTTGTGGACTTTAAAAGGGTGC
65 TAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGATGCCACGGAGTTGTGGACTTTAAAAGGGTGC
* * *
121980 CACGGAGTTGTGGACTTTAAAAGGTACCACGGAGTTTTGGACTTAAAACGATGCCACGGAGTTGT
130 CACGGAGTTGTGGACTTTAAAAGGTACCACGGAGTTGTGGACTTAAAACGATGCCACAGAGTTAT
*
122045 AGACTTTAAAAGGGTGACACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGT
195 AGACTTTAAAAGGGTGACACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGT
122098 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTAGACTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGT-GACTT
* *
122163 TAAAGGGTACCACGGAGTTGTGGACTTAAAAAGATGCCACGGAGTTGTGGACTTTAAAAGGGTGC
65 TAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGATGCCACGGAGTTGTGGACTTTAAAAGGGTGC
* *
122228 CATGGAGTTGTGGACTTTAAAGGGTACCACGGAGTTGTGGACTTAAAACGATGCCACAGAGTTAT
130 CACGGAGTTGTGGACTTTAAAAGGTACCACGGAGTTGTGGACTTAAAACGATGCCACAGAGTTAT
* *
122293 GGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGT
195 AGACTTTAAAAGGGTGACACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGT
* * * *
122346 TATGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTCTAAAAGGGTGCCACGGCGTTGTGGACTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGT-GACTT
* * * * * *
122410 TAAAAGGATGCCATGGAGTTATGGACTTTAAAAGAATGCCATGGAGTTGTGGAC-TTAAAAAGAT
65 T-AAAGGGTGCCACGGAGTTGTGGACTTTAAAAG-ATGCCACGGAGTTGTGGACTTTAAAAGGGT
122474 GCCACGGAGTTGTGGACTTTAAAA
128 GCCACGGAGTTGTGGACTTTAAAA
122498 ACAAATGCCA
Statistics
Matches: 360, Mismatches: 37, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
247 54 0.15
248 287 0.80
249 19 0.05
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.25
Consensus pattern (247 bp):
TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGACTTT
AAAGGGTGCCACGGAGTTGTGGACTTTAAAAGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCC
ACGGAGTTGTGGACTTTAAAAGGTACCACGGAGTTGTGGACTTAAAACGATGCCACAGAGTTATA
GACTTTAAAAGGGTGACACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGT
Found at i:123558 original size:11 final size:11
Alignment explanation
Indices: 123542--123569 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
123532 AGTGAAAAGG
123542 TTTTTTTTGTT
1 TTTTTTTTGTT
123553 TTTTTTTTGTT
1 TTTTTTTTGTT
123564 TTTTTT
1 TTTTTT
123570 CTTTTTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:123887 original size:23 final size:24
Alignment explanation
Indices: 123861--123905 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
123851 CTTTTGCACT
123861 TTTTTCTTTTCA-TTTTTTTGTGC
1 TTTTTCTTTTCACTTTTTTTGTGC
*
123884 TTTTTCTTTTGACTTTTTTTGT
1 TTTTTCTTTTCACTTTTTTTGT
123906 CATTTTAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.04, C:0.11, G:0.09, T:0.76
Consensus pattern (24 bp):
TTTTTCTTTTCACTTTTTTTGTGC
Found at i:123911 original size:23 final size:23
Alignment explanation
Indices: 123862--123911 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
123852 TTTTGCACTT
*
123862 TTTTCTTTTCATTTTTTTGTGCT
1 TTTTCTTTTCATTTTTTTGTGCA
*
123885 TTTTCTTTTGACTTTTTTTGT-CA
1 TTTTCTTTTCA-TTTTTTTGTGCA
123908 TTTT
1 TTTT
123912 AAAGGGAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.06, C:0.12, G:0.08, T:0.74
Consensus pattern (23 bp):
TTTTCTTTTCATTTTTTTGTGCA
Found at i:130192 original size:14 final size:14
Alignment explanation
Indices: 130173--130201 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
130163 CTTCTGCATC
130173 TTCTTTCTTTCTTA
1 TTCTTTCTTTCTTA
130187 TTCTTTCTTTCTTA
1 TTCTTTCTTTCTTA
130201 T
1 T
130202 CTAACCAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (14 bp):
TTCTTTCTTTCTTA
Found at i:130594 original size:26 final size:28
Alignment explanation
Indices: 130550--130601 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
130540 TTTGATTTTG
130550 ATTTTTTTTCTCAACCTCC-CCCCTCCT
1 ATTTTTTTTCTCAACCTCCACCCCTCCT
**
130577 ATTTTTTTTCTTTA-CTCCACCCCTC
1 ATTTTTTTTCTCAACCTCCACCCCTC
130602 GTTTTATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.12, C:0.40, G:0.00, T:0.48
Consensus pattern (28 bp):
ATTTTTTTTCTCAACCTCCACCCCTCCT
Found at i:131405 original size:38 final size:38
Alignment explanation
Indices: 131354--131432 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
131344 GAACTCTTTT
*
131354 TATTAAAACAAAAAGAAAAGATTTTTTAATTGTACAAG
1 TATTAAAACAAAAAGAAAAGATTTTTTAATTATACAAG
131392 TATTAAAACAAAAAGAAAAGATTTTTTAATTATACAAG
1 TATTAAAACAAAAAGAAAAGATTTTTTAATTATACAAG
131430 TAT
1 TAT
131433 CTATTGATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (38 bp):
TATTAAAACAAAAAGAAAAGATTTTTTAATTATACAAG
Found at i:134302 original size:17 final size:17
Alignment explanation
Indices: 134280--134312 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
134270 TAAATTTATG
*
134280 AAATTTTTTTTATAAAT
1 AAATTTGTTTTATAAAT
134297 AAATTTGTTTTATAAA
1 AAATTTGTTTTATAAA
134313 AGGGGAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
AAATTTGTTTTATAAAT
Found at i:134972 original size:19 final size:20
Alignment explanation
Indices: 134950--134996 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
134940 ACATTGTATT
*
134950 GATACATGTTC-ATTATATC
1 GATACATGCTCAATTATATC
* *
134969 GATACATACTCAATTGTATC
1 GATACATGCTCAATTATATC
134989 GATACATG
1 GATACATG
134997 AAACTGGCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (20 bp):
GATACATGCTCAATTATATC
Found at i:134990 original size:20 final size:19
Alignment explanation
Indices: 134941--134995 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
134931 TGTATCGATA
* **
134941 CATTGTATTGATACATGTT
1 CATTGTATCGATACATACT
*
134960 CATTATATCGATACATACT
1 CATTGTATCGATACATACT
134979 CAATTGTATCGATACAT
1 C-ATTGTATCGATACAT
134996 GAAACTGGCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (19 bp):
CATTGTATCGATACATACT
Found at i:135063 original size:33 final size:32
Alignment explanation
Indices: 135026--135090 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
135016 TATCATTGTT
135026 TGTATCAATACATG-GCACATTGTATCGATACAG
1 TGTATCAATACATGAG-A-ATTGTATCGATACAG
*
135059 TGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCAATACATG-AGAATTGTATCGATACA
135091 TTATACCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (32 bp):
TGTATCAATACATGAGAATTGTATCGATACAG
Found at i:135064 original size:13 final size:13
Alignment explanation
Indices: 135046--135070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
135036 CATGGCACAT
135046 TGTATCGATACAG
1 TGTATCGATACAG
135059 TGTATCGATACA
1 TGTATCGATACA
135071 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:136025 original size:16 final size:16
Alignment explanation
Indices: 135984--136026 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
135974 TTAATATTAA
*
135984 TATTAATATAATTTTT
1 TATTAATTTAATTTTT
**
136000 TATTTTTTTAATTTTT
1 TATTAATTTAATTTTT
136016 TATTAATTTAA
1 TATTAATTTAA
136027 AAATAATAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTAATTTAATTTTT
Found at i:140561 original size:21 final size:21
Alignment explanation
Indices: 140535--140583 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
140525 ATTTAATTTT
140535 TTAA-TTAAATAATAATTCAAA
1 TTAATTTAAATAA-AATTCAAA
* *
140556 TTAATTTAATTAAAATTTAAA
1 TTAATTTAAATAAAATTCAAA
*
140577 TTTATTT
1 TTAATTT
140584 CATTTAGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATTTAAATAAAATTCAAA
Found at i:146629 original size:34 final size:33
Alignment explanation
Indices: 146562--146627 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
146552 ATCATATCAT
146562 TTATAAATTAAGATAAAAAATAAAATTTTAAAA
1 TTATAAATTAAGATAAAAAATAAAATTTTAAAA
*
146595 TTATAAATTAGGATAAAAAATAAAATTTTAAAA
1 TTATAAATTAAGATAAAAAATAAAATTTTAAAA
146628 ATAATAGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (33 bp):
TTATAAATTAAGATAAAAAATAAAATTTTAAAA
Found at i:146991 original size:38 final size:38
Alignment explanation
Indices: 146940--147014 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
146930 TTAACTTAGT
146940 GAAATCAAATAAAACAAATTTATCAGAGGATACATGTA
1 GAAATCAAATAAAACAAATTTATCAGAGGATACATGTA
146978 GAAATCAAATAAAACAAATTTATCAGAGGATACATGT
1 GAAATCAAATAAAACAAATTTATCAGAGGATACATGT
147015 CATTAATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.52, C:0.11, G:0.13, T:0.24
Consensus pattern (38 bp):
GAAATCAAATAAAACAAATTTATCAGAGGATACATGTA
Found at i:152088 original size:174 final size:174
Alignment explanation
Indices: 151769--152102 Score: 481
Period size: 174 Copynumber: 1.9 Consensus size: 174
151759 ATGTTGATTT
* * * * * *
151769 GAAGTACTTAGATAATTTGATTCTGTAACTATTTTTCAAATGAATTTATACTAAAACTCTCAGTG
1 GAAGCACTTAGATAATTTGATTCTGTAACCATTCTTCAAATGAACTTACACTAAAAATCTCAGTG
* * * ** *
151834 CATTATATTATACATGCGATGCTAACTTGTGTCCAAATTCCAAAGCCTAATGATTCTAGCTATGA
66 CAATATATTACACATGCAATGCTAACTTGCATCCAAATTCCAAAGCCTAATGATTCTAGCCATGA
*
151899 GGCCCATAAAGCAGCTTTGTTAATCTTAATATGACAGGGATGTC
131 AGCCCATAAAGCAGCTTTGTTAATCTTAATATGACAGGGATGTC
* *
151943 GAAGCACTTAGATCATTTGAGTT-TGTTACCATTCTTCAAATGAACTTACACTAAAAATCTCAGT
1 GAAGCACTTAGATAATTTGA-TTCTGTAACCATTCTTCAAATGAACTTACACTAAAAATCTCAGT
* *
152007 GCAATATATTACACATGCAATGCTAACTTGCATCCAAATTCCAAAGCCTAGTGATTTTAGCCATG
65 GCAATATATTACACATGCAATGCTAACTTGCATCCAAATTCCAAAGCCTAATGATTCTAGCCATG
* *
152072 AAGCCCGTATAGCAGCTTTGTTAATCTTAAT
130 AAGCCCATAAAGCAGCTTTGTTAATCTTAAT
152103 TTTACATTAC
Statistics
Matches: 140, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
174 138 0.99
175 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34
Consensus pattern (174 bp):
GAAGCACTTAGATAATTTGATTCTGTAACCATTCTTCAAATGAACTTACACTAAAAATCTCAGTG
CAATATATTACACATGCAATGCTAACTTGCATCCAAATTCCAAAGCCTAATGATTCTAGCCATGA
AGCCCATAAAGCAGCTTTGTTAATCTTAATATGACAGGGATGTC
Found at i:152606 original size:22 final size:23
Alignment explanation
Indices: 152573--152617 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
152563 TAGCATAATG
*
152573 GAAATGATTAAAATTA-TATTAT
1 GAAATGATTAAAATGATTATTAT
152595 GAAATG-TATAAAATGATTATTAT
1 GAAATGAT-TAAAATGATTATTAT
152618 ATCAAGTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 13 0.65
23 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (23 bp):
GAAATGATTAAAATGATTATTAT
Found at i:153493 original size:13 final size:13
Alignment explanation
Indices: 153475--153592 Score: 68
Period size: 13 Copynumber: 9.2 Consensus size: 13
153465 AGATTTTTCT
153475 TTATATTATAATA
1 TTATATTATAATA
153488 TTATATGT-TAATAAA
1 TTATAT-TATAAT--A
* *
153503 TAATGTTAT-ATA
1 TTATATTATAATA
*
153515 ATATA-TATAATA
1 TTATATTATAATA
* *
153527 TTATAATAAAATA
1 TTATATTATAATA
153540 TT-TA-TATAACTA
1 TTATATTATAA-TA
*
153552 TTGATATTGTAATA
1 TT-ATATTATAATA
* **
153566 -TATAATATGCTA
1 TTATATTATAATA
153578 TTATATTATAATA
1 TTATATTATAATA
153591 TT
1 TT
153593 TAAATGTTTA
Statistics
Matches: 78, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
11 7 0.09
12 23 0.29
13 30 0.38
14 8 0.10
15 10 0.13
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (13 bp):
TTATATTATAATA
Found at i:153516 original size:17 final size:19
Alignment explanation
Indices: 153476--153531 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
153466 GATTTTTCTT
**
153476 TATATTATAATATTATATGT
1 TATA-TATAATATTATATAA
* *
153496 TAATAAATAATGTTATATAA
1 T-ATATATAATATTATATAA
153516 TATATATAATATTATA
1 TATATATAATATTATA
153532 ATAAAATATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 13 0.45
20 13 0.45
21 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (19 bp):
TATATATAATATTATATAA
Found at i:153579 original size:20 final size:19
Alignment explanation
Indices: 153509--153591 Score: 59
Period size: 18 Copynumber: 4.5 Consensus size: 19
153499 TAAATAATGT
*
153509 TATATAATAT-ATATAATA
1 TATATAATATGATATTATA
**
153527 T-TATAATAAAATATT-TA
1 TATATAATATGATATTATA
* *
153544 TATA-ACTATTGATATTGTAA
1 TATATAATA-TGATATTAT-A
*
153564 TATATAATATGCTATTATA
1 TATATAATATGATATTATA
153583 T-TATAATAT
1 TATATAATAT
153592 TTAAATGTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
17 13 0.25
18 20 0.39
19 3 0.06
20 12 0.24
21 3 0.06
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (19 bp):
TATATAATATGATATTATA
Done.