genome.fa.s1356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1356
Parameters: 2 7 7 80 10 50 1000
Length:  78840

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1926--1971	20	2.3	22	75	21	55	43	17	4	34	1.69
4893--5041	29	5.2	29	76	8	126	27	16	27	28	1.97
5151--5205	29	2.0	29	89	7	87	27	18	23	30	1.97
5231--5349	31	3.9	31	75	6	100	24	21	21	31	1.98
5353--5420	34	2.0	34	91	0	109	32	13	19	35	1.90
7329--7681	78	4.5	79	77	6	322	33	11	24	30	1.91
7467--7681	81	2.7	79	80	4	245	34	10	25	30	1.89
7350--7681	159	2.1	159	80	7	365	32	11	25	30	1.91
7350--7726	78	4.8	77	75	10	239	32	11	25	30	1.91
7607--7802	107	1.8	107	85	3	279	32	11	26	30	1.91
7740--7839	51	2.0	51	84	7	132	34	8	26	32	1.85
7790--7937	79	1.9	78	87	6	219	35	12	23	28	1.92
7794--7974	79	2.3	78	82	12	214	35	13	22	28	1.92
9605--9631	13	2.1	13	100	0	54	29	14	14	40	1.86
9586--9649	32	2.0	32	87	9	94	28	15	15	40	1.88
9616--9671	19	2.9	19	86	2	85	30	17	14	37	1.90
13455--13510	22	2.5	23	97	2	105	62	8	10	17	1.52
14421--14495	20	3.8	20	78	3	71	40	13	13	33	1.83
14418--14495	40	2.0	39	84	2	102	39	14	12	33	1.84
14984--16497	29	52.9	28	88	4	1996	22	17	32	28	1.96
14984--16496	115	13.2	114	89	2	2082	22	17	31	28	1.96
17719--17792	1	74.0	1	73	0	58	1	2	9	86	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17714--17790	20	3.7	20	76	15	68	2	3	9	84	0.84
17740--17791	11	4.6	11	86	13	79	0	0	11	88	0.52
17735--17793	12	5.0	12	83	10	77	0	1	11	86	0.65
17748--17798	26	1.9	27	88	4	77	0	0	17	82	0.67
30855--30910	22	2.5	23	97	2	105	62	8	10	17	1.52
31821--31895	20	3.8	20	78	3	71	40	13	13	33	1.83
31818--31895	40	2.0	39	84	2	102	39	14	12	33	1.84
33316--33573	130	2.0	130	93	0	444	29	14	13	42	1.84
40922--40952	15	2.1	15	100	0	62	38	0	19	41	1.51
44218--44258	21	1.9	22	90	5	66	43	17	17	21	1.87
45094--45193	52	1.9	52	89	4	157	30	19	18	33	1.95
45231--45346	13	7.5	13	67	29	52	37	18	12	31	1.88
45239--45367	19	7.8	18	71	28	117	37	17	12	31	1.87
45231--45365	32	4.2	32	98	0	243	37	18	12	31	1.88
45958--46431	156	3.0	156	91	2	729	33	16	24	25	1.95
46484--46627	43	3.2	42	77	12	144	31	17	24	26	1.97
46313--46613	87	3.4	87	79	8	345	29	20	24	24	1.99
46313--46627	91	3.5	90	80	7	340	29	20	24	25	1.99
46711--46856	30	4.8	30	80	11	131	23	15	29	30	1.96
46648--46856	56	3.5	62	78	12	170	27	15	28	28	1.96
46746--46862	57	2.1	57	88	4	175	21	16	32	29	1.95
46743--46856	30	4.0	29	82	10	153	22	16	30	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48292--48407	16	7.2	16	72	16	82	0	5	12	81	0.84
48306--48407	36	2.8	34	80	14	98	0	5	11	82	0.83
48341--48406	24	2.7	25	81	11	82	0	3	12	84	0.72
48301--48407	26	4.1	24	74	24	60	0	5	12	82	0.83
48349--48408	26	2.4	26	86	5	79	0	3	13	83	0.77
50742--50806	19	3.8	18	75	24	77	32	12	16	38	1.86
50763--50787	13	1.9	13	100	0	50	36	16	16	32	1.90
50744--50814	32	2.2	32	97	0	133	32	12	18	36	1.88
50859--50883	13	1.9	13	100	0	50	32	16	16	36	1.90
50892--51020	52	2.5	52	94	0	231	34	17	19	28	1.95
53827--53893	19	3.9	18	74	23	72	35	11	14	37	1.84
53850--53874	13	1.9	13	100	0	50	36	16	16	32	1.90
53831--53901	32	2.2	32	94	0	124	33	12	16	36	1.87
53946--53970	13	1.9	13	100	0	50	32	16	16	36	1.90
53979--54107	52	2.5	52	94	0	231	34	17	19	28	1.95
69163--69246	19	4.7	19	80	16	108	38	17	11	32	1.87
69182--69244	32	2.0	32	100	0	126	34	19	12	33	1.89
69201--69225	13	1.9	13	100	0	50	32	16	16	36	1.90
70601--70638	19	1.9	19	89	5	58	39	5	0	55	1.23
71056--71089	2	17.0	2	93	0	59	0	47	0	52	1.00
74705--74756	2	26.0	2	100	0	104	50	0	0	50	1.00
75389--75448	23	2.7	23	78	17	63	30	0	0	70	0.88

Tables:   1

The End!