genome.fa.s1358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1358
Parameters: 2 7 7 80 10 50 1000
Length:  93759

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4618--4647	9	3.2	9	95	4	51	3	10	0	86	0.67
9853--9900	21	2.2	21	85	7	60	60	6	2	31	1.33
13454--13581	51	2.5	52	93	1	213	28	17	17	35	1.94
13590--13614	13	1.9	13	100	0	50	36	16	16	32	1.90
13652--13752	32	3.1	32	86	1	148	37	15	9	36	1.81
13708--13732	13	1.9	13	100	0	50	32	16	16	36	1.90
14238--14311	33	2.2	32	76	9	76	64	10	0	24	1.25
14272--14339	16	4.2	16	76	12	52	61	8	0	29	1.26
14254--14343	33	2.7	32	81	11	94	63	8	0	27	1.24
14238--14345	17	6.5	17	72	13	73	62	10	0	26	1.27
15846--15902	25	2.2	25	84	3	69	28	0	3	68	1.06
16029--17207	400	3.0	391	77	11	1092	44	8	5	41	1.58
18335--18446	58	2.0	57	94	3	199	32	22	11	33	1.90
22069--22106	13	2.9	13	92	0	67	31	18	15	34	1.92
28458--28533	31	2.4	31	79	14	84	31	19	1	47	1.58
30221--30282	31	2.0	31	93	0	106	46	4	22	25	1.71
31127--31157	13	2.4	13	94	0	53	32	12	12	41	1.81
35534--35608	22	3.6	21	82	7	73	30	18	13	37	1.89
36731--36805	20	3.8	20	98	0	141	38	12	18	30	1.87
37384--37423	20	2.0	20	90	9	64	37	0	0	62	0.95
39773--39799	13	2.1	13	100	0	54	29	14	14	40	1.86
40268--40295	13	2.2	13	100	0	56	28	14	17	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40248--40313	33	2.0	33	88	5	98	30	15	13	40	1.85
40354--40988	214	3.0	214	99	0	1234	29	21	17	31	1.96
43894--43923	13	2.3	13	94	0	51	36	16	13	33	1.88
47884--47908	13	1.9	13	100	0	50	36	16	16	32	1.90
47864--47930	33	2.0	33	88	0	98	32	11	14	40	1.83
47972--47996	13	1.9	13	100	0	50	32	16	20	32	1.94
48005--48125	52	2.3	52	97	0	224	34	18	18	28	1.94
51712--51765	12	4.5	13	77	15	62	38	0	25	35	1.57
51719--51764	3	15.3	3	86	0	65	36	0	26	36	1.57
55164--55195	16	2.0	16	100	0	64	43	0	0	56	0.99
60388--60420	16	2.0	17	94	5	59	39	0	0	60	0.97
61937--61967	2	15.5	2	93	0	53	54	0	0	45	0.99
62477--62556	34	2.3	34	78	2	88	22	1	36	40	1.62
74370--74441	10	7.0	10	75	6	54	48	13	2	34	1.57
74415--74445	2	15.5	2	93	0	53	51	3	0	45	1.17
74859--74908	16	3.1	16	88	2	64	54	8	2	36	1.42
75717--75785	16	4.4	16	78	7	70	53	5	1	39	1.34
75725--75790	32	2.1	31	85	2	87	59	4	1	34	1.27
77092--77121	15	2.0	15	93	0	51	50	0	0	50	1.00
77088--77124	19	1.9	19	88	0	56	45	0	0	54	1.00
79121--79171	9	5.8	9	77	11	52	76	0	19	3	0.94
79213--79252	14	2.7	15	88	11	57	70	0	22	7	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79234--79308	39	1.9	38	84	7	98	60	4	30	5	1.38
84425--84580	35	4.6	35	74	12	137	41	14	23	21	1.89
84413--84541	31	4.0	31	80	10	116	42	15	22	19	1.88
84416--84544	33	3.9	33	76	15	131	43	15	21	19	1.88
84699--84805	35	3.1	35	78	2	108	51	12	16	19	1.76
84868--84943	28	2.6	30	77	10	84	42	13	18	26	1.87
86207--86405	79	2.5	79	81	1	202	30	16	27	25	1.97
86360--86431	28	2.6	28	86	0	90	25	19	33	22	1.97
86286--86485	107	1.9	108	81	5	244	30	16	27	27	1.96
86309--86808	262	1.9	262	89	2	781	31	13	26	28	1.94
86622--86697	27	2.8	26	88	9	100	21	22	34	22	1.97
86419--86803	51	7.4	52	70	11	232	32	12	25	29	1.93
89172--89197	13	2.0	13	100	0	52	38	15	15	30	1.88
89151--89217	33	2.0	33	88	0	98	43	16	14	25	1.86
89237--89300	19	3.7	18	76	23	75	35	14	12	37	1.83
89259--89283	13	1.9	13	100	0	50	32	16	16	36	1.90
89240--89300	32	1.9	32	96	0	113	36	14	13	36	1.85
89340--89400	21	3.1	19	79	11	77	32	13	16	37	1.87
90004--91066	55	19.3	55	89	4	1567	20	20	30	28	1.98
92034--92083	10	5.0	10	79	11	50	0	10	4	86	0.71

Tables:   1

The End!