Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold136
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1039917
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.32
Warning! 114553 characters in sequence are not A, C, G, or T
File 4 of 6
Found at i:655105 original size:35 final size:37
Alignment explanation
Indices: 655019--655151 Score: 102
Period size: 35 Copynumber: 3.7 Consensus size: 37
655009 AAAAAATTTA
* * *
655019 AATATAATATAATATTAAATATCAAAATATAT-AACAAAT
1 AATATTAT-TAATA-TAATTAT-AAAATATATAAACATAT
655058 AA-ATTATTAATAT-ATTA-AAAATATATAAACATAT
1 AATATTATTAATATAATTATAAAATATATAAACATAT
*
655092 AATATT-TTAAATATAATTATAACATATA-AAA-ATAT
1 AATATTATT-AATATAATTATAAAATATATAAACATAT
* * *
655127 ATTAATA-TAATATAAATATATAAAT
1 AATATTATTAATATAATTATA-AAAT
655152 TTTTCAATAA
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
33 9 0.11
34 21 0.27
35 23 0.29
36 8 0.10
37 12 0.15
38 4 0.05
39 2 0.03
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (37 bp):
AATATTATTAATATAATTATAAAATATATAAACATAT
Found at i:655126 original size:21 final size:22
Alignment explanation
Indices: 655100--655149 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
655090 ATAATATTTT
655100 AAATATAATT-ATA-ACATATAA
1 AAATATAATTAATATA-ATATAA
655121 AAATAT-ATTAATATAATATAA
1 AAATATAATTAATATAATATAA
*
655142 ATATATAA
1 AAATATAA
655150 ATTTTTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.12
21 20 0.80
22 2 0.08
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AAATATAATTAATATAATATAA
Found at i:655147 original size:8 final size:8
Alignment explanation
Indices: 654970--655151 Score: 68
Period size: 8 Copynumber: 23.0 Consensus size: 8
654960 TTTAAATATA
*
654970 ATATAATT
1 ATATAAAT
654978 ATAATAAAT
1 AT-ATAAAT
* *
654987 AAAAAAAT
1 ATATAAAT
*
654995 ATTTAAA-
1 ATATAAAT
655002 ATAT-AAT
1 ATATAAAT
655009 A-A-AAA-
1 ATATAAAT
*
655014 ATTTAAAT
1 ATATAAAT
655022 ATAATATAAT
1 AT-ATA-AAT
655032 AT-TAAAT
1 ATATAAAT
655039 ATCA-AAAT
1 AT-ATAAAT
655047 ATATAACA-
1 ATATAA-AT
655055 A-ATAAAT
1 ATATAAAT
655062 -TATTAATAT
1 ATA-TAA-AT
*
655071 ATTAAAAAT
1 A-TATAAAT
*
655080 ATATAAAC
1 ATATAAAT
655088 ATAT-AAT
1 ATATAAAT
* *
655095 ATTTTAA-
1 ATATAAAT
655102 ATAT-AAT
1 ATATAAAT
655109 -TATAACAT
1 ATATAA-AT
*
655117 ATAAAAAT
1 ATATAAAT
655125 ATATTAATAT
1 ATA-TAA-AT
655135 AATATAAAT
1 -ATATAAAT
655144 ATATAAAT
1 ATATAAAT
655152 TTTTCAATAA
Statistics
Matches: 131, Mismatches: 17, Indels: 52
0.65 0.09 0.26
Matches are distributed among these distances:
5 1 0.01
6 11 0.08
7 27 0.21
8 53 0.40
9 22 0.17
10 12 0.09
11 5 0.04
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (8 bp):
ATATAAAT
Found at i:655160 original size:27 final size:27
Alignment explanation
Indices: 655080--655160 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 27
655070 TATTAAAAAT
*
655080 ATATAAACATAT-AATATTTTAAATATA
1 ATATAAATATATAAATATTTT-AATATA
* *
655107 ATTATAACATATAAAAATATATTAATATA
1 A-TATAA-ATATATAAATATTTTAATATA
655136 ATATAAATATATAAAT-TTTTCAATA
1 ATATAAATATATAAATATTTT-AATA
655161 AATTTTATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
26 3 0.07
27 14 0.31
28 10 0.22
29 11 0.24
30 7 0.16
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (27 bp):
ATATAAATATATAAATATTTTAATATA
Found at i:655191 original size:11 final size:12
Alignment explanation
Indices: 655175--655223 Score: 52
Period size: 11 Copynumber: 4.4 Consensus size: 12
655165 TTATAATTTA
655175 TATATTTAT-AT
1 TATATTTATAAT
655186 TATA-TTATAAT
1 TATATTTATAAT
*
655197 TATATTTA-AAA
1 TATATTTATAAT
*
655208 TAT-TTTTTAAT
1 TATATTTATAAT
655219 TATAT
1 TATAT
655224 AAATTTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
10 7 0.23
11 20 0.65
12 4 0.13
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATATTTATAAT
Found at i:655203 original size:22 final size:22
Alignment explanation
Indices: 655175--655223 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
655165 TTATAATTTA
* *
655175 TATATTTATATTATATTATAAT
1 TATATTTAAAATATATTATAAT
* *
655197 TATATTTAAAATATTTTTTAAT
1 TATATTTAAAATATATTATAAT
655219 TATAT
1 TATAT
655224 AAATTTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TATATTTAAAATATATTATAAT
Found at i:655231 original size:26 final size:28
Alignment explanation
Indices: 655102--655251 Score: 84
Period size: 27 Copynumber: 5.4 Consensus size: 28
655092 AATATTTTAA
* *
655102 ATATAATTATA-ACATATAAAAATATATT
1 ATATAATTATATAAATTTAAAAATAT-TT
* * * *
655130 A-AT-ATAATATAAATATATAAATTTTT
1 ATATAATTATATAAATTTAAAAATATTT
* *
655156 CA-ATAAATTTTAT-AATTT--ATATATTT
1 -ATAT-AATTATATAAATTTAAAAATATTT
*
655182 ATATTATATTATAATTATATTT-AAAATATTT
1 ATA-TA-ATTAT-A-TAAATTTAAAAATATTT
*
655213 -TTTAATTATATAAATTTAAAAATATTT
1 ATATAATTATATAAATTTAAAAATATTT
655240 ATATAATTATAT
1 ATATAATTATAT
655252 TATATATTTT
Statistics
Matches: 94, Mismatches: 15, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
25 1 0.01
26 21 0.22
27 31 0.33
28 21 0.22
29 8 0.09
30 5 0.05
31 7 0.07
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
ATATAATTATATAAATTTAAAAATATTT
Found at i:655897 original size:13 final size:13
Alignment explanation
Indices: 655861--655925 Score: 55
Period size: 13 Copynumber: 5.2 Consensus size: 13
655851 CTTAAAAATT
*
655861 TAAATATGATATA
1 TAAATATAATATA
*
655874 CAAATAT--TATA
1 TAAATATAATATA
655885 TAAATATAATATA
1 TAAATATAATATA
*
655898 TTTAATA-AATATA
1 -TAAATATAATATA
* *
655911 AAAATATATTATA
1 TAAATATAATATA
655924 TA
1 TA
655926 TTTAAATATA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
11 10 0.24
12 4 0.10
13 22 0.54
14 5 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (13 bp):
TAAATATAATATA
Found at i:655932 original size:17 final size:16
Alignment explanation
Indices: 655912--655973 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
655902 ATAAATATAA
655912 AAATATATTATATATTT
1 AAATATATTA-ATATTT
655929 AAATATAATTAATATTT
1 AAATAT-ATTAATATTT
655946 --ATAT-TTAATATATT
1 AAATATATTAATAT-TT
*
655960 AAATTTATT-ATATT
1 AAATATATTAATATT
655974 AATATTTATG
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 7 0.18
14 2 0.05
15 5 0.13
16 7 0.18
17 14 0.36
18 4 0.10
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AAATATATTAATATTT
Found at i:655970 original size:23 final size:22
Alignment explanation
Indices: 655922--655995 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 22
655912 AAATATATTA
*
655922 TATATTTAAATATAATT-AATATT
1 TATATTT-AATAT-ATTAAATTTT
655945 TATATTTAATATATTAAATTTAT
1 TATATTTAATATATTAAATTT-T
*
655968 TATA-TTAATATTTATGAAATTTT
1 TATATTTAATA--TATTAAATTTT
655991 TATAT
1 TATAT
655996 AAAAAACTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
21 3 0.07
22 15 0.34
23 17 0.39
24 9 0.20
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (22 bp):
TATATTTAATATATTAAATTTT
Found at i:655971 original size:14 final size:15
Alignment explanation
Indices: 655940--655982 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
655930 AATATAATTA
* *
655940 ATATTTATATTTAAT
1 ATATTAATATTTATT
655955 ATATTAA-ATTTATT
1 ATATTAATATTTATT
655969 ATATTAATATTTAT
1 ATATTAATATTTAT
655983 GAAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTAATATTTATT
Found at i:656382 original size:21 final size:22
Alignment explanation
Indices: 656358--656406 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
656348 ATGATATTTG
656358 AAATAAATTTT-TTAAAAAATA
1 AAATAAATTTTATTAAAAAATA
* *
656379 AAATTAATTTTATTAATAAATA
1 AAATAAATTTTATTAAAAAATA
*
656401 ATATAA
1 AAATAA
656407 TTAAAATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATAAATTTTATTAAAAAATA
Found at i:656407 original size:21 final size:20
Alignment explanation
Indices: 656359--656408 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
656349 TGATATTTGA
656359 AATA-AATTTTTTAAAAAAT
1 AATATAATTTTTTAAAAAAT
* *
656378 AAAATTAATTTTATTAATAAAT
1 AATA-TAATTTT-TTAAAAAAT
656400 AATATAATT
1 AATATAATT
656409 AAAATATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 3 0.12
21 11 0.44
22 11 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATATAATTTTTTAAAAAAT
Found at i:657045 original size:2 final size:2
Alignment explanation
Indices: 657040--657064 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
657030 TCTTCTGATT
657040 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
657065 CTCTGAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:661492 original size:2 final size:2
Alignment explanation
Indices: 661487--661520 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
661477 TCTCCTTTCA
661487 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
661521 CCTGTTTCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:662398 original size:16 final size:17
Alignment explanation
Indices: 662353--662399 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
662343 ATATTATATA
*
662353 TATTTAATTTATAATGT
1 TATTTAATTTAAAATGT
* *
662370 TAATCATATTTAAAAT-T
1 TATTTA-ATTTAAAATGT
662387 TATTTAATTTAAA
1 TATTTAATTTAAA
662400 TGAATTTAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
16 7 0.29
17 9 0.38
18 8 0.33
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
TATTTAATTTAAAATGT
Found at i:663203 original size:12 final size:12
Alignment explanation
Indices: 663186--663210 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
663176 ACAGAAGTAA
663186 CATCCGCCAAAG
1 CATCCGCCAAAG
663198 CATCCGCCAAAG
1 CATCCGCCAAAG
663210 C
1 C
663211 GAGAATCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.44, G:0.16, T:0.08
Consensus pattern (12 bp):
CATCCGCCAAAG
Found at i:665730 original size:3 final size:3
Alignment explanation
Indices: 665722--665752 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
665712 CTTTCGCTCC
665722 CTT CTT CTT CTT CTT CTT CTT CCTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT -CTT CTT CTT
665753 TGATTCCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:671155 original size:11 final size:11
Alignment explanation
Indices: 671131--671188 Score: 62
Period size: 11 Copynumber: 4.9 Consensus size: 11
671121 TTTAAATATG
671131 ATATAATTATATA
1 ATATAA-TATA-A
671144 ATATAAATATAA
1 ATAT-AATATAA
*
671156 AAATAATATAA
1 ATATAATATAA
*
671167 ATATAAAATAA
1 ATATAATATAA
671178 ATATATATATA
1 ATATA-ATATA
671189 TTAAATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
11 21 0.54
12 8 0.21
13 8 0.21
14 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATAATATAA
Found at i:671163 original size:17 final size:17
Alignment explanation
Indices: 671141--671224 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 17
671131 ATATAATTAT
671141 ATAATATAAATATAAAA
1 ATAATATAAATATAAAA
671158 ATAATATAAATAT-AAA
1 ATAATATAAATATAAAA
* *
671174 ATAAATATATATATATTAA
1 AT-AATATAAATATA-AAA
* *
671193 ATTAT-TAACTTATAAAAA
1 ATAATATAA-ATAT-AAAA
*
671211 ATTATATAAATATA
1 ATAATATAAATATA
671225 TAATACAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
16 5 0.09
17 26 0.48
18 15 0.28
19 8 0.15
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (17 bp):
ATAATATAAATATAAAA
Found at i:671171 original size:36 final size:37
Alignment explanation
Indices: 671131--671245 Score: 96
Period size: 36 Copynumber: 3.1 Consensus size: 37
671121 TTTAAATATG
671131 ATATAATTATATAATATA-AATATAAAAATAATATAA
1 ATATAATTATATAATATATAATATAAAAATAATATAA
* *
671167 ATATAA-AATA-AATATATATATATTAAATTATTAACTTATAA
1 ATATAATTATATAATATATA-ATA-TAAA--AATAA--TATAA
* *
671208 A-A-AATTATATAAATATATAATACAAAAAAAATATAA
1 ATATAATTATAT-AATATATAATATAAAAATAATATAA
671244 AT
1 AT
671246 TTAAATATGA
Statistics
Matches: 62, Mismatches: 6, Indels: 21
0.70 0.07 0.24
Matches are distributed among these distances:
34 6 0.10
35 4 0.06
36 15 0.24
37 4 0.06
38 3 0.05
39 6 0.10
40 7 0.11
41 9 0.15
42 8 0.13
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (37 bp):
ATATAATTATATAATATATAATATAAAAATAATATAA
Found at i:677343 original size:17 final size:18
Alignment explanation
Indices: 677316--677363 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
677306 ATATAATATA
677316 TTTAA-ATATTTAA-AAT
1 TTTAATATATTTAATAAT
677332 TTTAATATATTTAATAAT
1 TTTAATATATTTAATAAT
*
677350 TTATATTATATTTA
1 TT-TAATATATTTA
677364 TATATATACG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 5 0.18
17 8 0.29
18 5 0.18
19 10 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATATATTTAATAAT
Found at i:677351 original size:8 final size:9
Alignment explanation
Indices: 677309--677370 Score: 67
Period size: 8 Copynumber: 6.9 Consensus size: 9
677299 TACTTAAATA
677309 TAATATATT
1 TAATATATT
677318 TAA-ATATT
1 TAATATATT
*
677326 TAAAAT-TT
1 TAATATATT
677334 TAATATATT
1 TAATATATT
677343 TAATA-ATT
1 TAATATATT
677351 TATATTATATT
1 TA-A-TATATT
677362 TATATATAT
1 TA-ATATAT
677371 ACGAATTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
8 20 0.43
9 13 0.28
10 7 0.15
11 7 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
TAATATATT
Found at i:677707 original size:2 final size:2
Alignment explanation
Indices: 677700--677724 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
677690 AGATCCTTTA
677700 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
677725 ATTTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:681888 original size:12 final size:12
Alignment explanation
Indices: 681873--681900 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
681863 GGAAAAAAAA
681873 ATTATGTTAATG
1 ATTATGTTAATG
681885 ATTATGTTAATG
1 ATTATGTTAATG
681897 ATTA
1 ATTA
681901 ATTTACCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (12 bp):
ATTATGTTAATG
Found at i:687396 original size:2 final size:2
Alignment explanation
Indices: 687389--687419 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
687379 AAGTTTATTA
687389 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
687420 GATTTTATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:687755 original size:16 final size:16
Alignment explanation
Indices: 687736--687816 Score: 62
Period size: 16 Copynumber: 5.2 Consensus size: 16
687726 TATATTCGAT
687736 TATAAATATAAAAATA
1 TATAAATATAAAAATA
*
687752 TAT-AATATTCAAAATA
1 TATAAATA-TAAAAATA
* *
687768 TAT-AA-ATAAAATTT
1 TATAAATATAAAAATA
* *
687782 TATAAAAATAAAAAAA
1 TATAAATATAAAAATA
* *
687798 TATATATAT-CAAATA
1 TATAAATATAAAAATA
687813 TATA
1 TATA
687817 TTTATATTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
14 8 0.16
15 15 0.29
16 28 0.55
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
TATAAATATAAAAATA
Found at i:689490 original size:23 final size:24
Alignment explanation
Indices: 689428--689492 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 24
689418 ATTAATAAAT
689428 AAAATAATTATTTAAAT-TTAATTA
1 AAAATAATT-TTTAAATATTAATTA
* * *
689452 TAAA-AATATATAAAATATT-ATTA
1 AAAATAAT-TTTTAAATATTAATTA
689475 AAAATAATTTTTAAATAT
1 AAAATAATTTTTAAATAT
689493 GTTAATATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
23 23 0.72
24 9 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAATAATTTTTAAATATTAATTA
Found at i:690163 original size:17 final size:17
Alignment explanation
Indices: 690129--690173 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
690119 AGGTATGGAT
*
690129 AAAAA-AATA-AAAATA
1 AAAAATAATATAATATA
*
690144 AAAAATATTATAATATA
1 AAAAATAATATAATATA
690161 AAAAATAATATAA
1 AAAAATAATATAA
690174 ATATGATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 5 0.20
16 3 0.12
17 17 0.68
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATAATATAATATA
Found at i:690173 original size:29 final size:30
Alignment explanation
Indices: 690130--690191 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
690120 GGTATGGATA
*
690130 AAAAAATAAAAATAAAAAAT-ATTATAATAT
1 AAAAAATAAAAAT-AAAAATGATAATAATAT
* *
690160 AAAAAAT-AATATAAATATGATAATAATAT
1 AAAAAATAAAAATAAAAATGATAATAATAT
690189 AAA
1 AAA
690192 GATATATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 5 0.18
29 16 0.57
30 7 0.25
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (30 bp):
AAAAAATAAAAATAAAAATGATAATAATAT
Found at i:690221 original size:30 final size:30
Alignment explanation
Indices: 690185--690262 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 30
690175 TATGATAATA
*
690185 ATATAAAGATATAT-TAA-AAATTTAAAATTT
1 ATATAAA-ATAAATATAATAAA-TTAAAATTT
690215 ATATAAAATAAATATAATAAATTAAAATTT
1 ATATAAAATAAATATAATAAATTAAAATTT
690245 ATAT-AAATAAATAATAAT
1 ATATAAAATAAAT-ATAAT
690263 TTAAATATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
29 13 0.30
30 28 0.64
31 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (30 bp):
ATATAAAATAAATATAATAAATTAAAATTT
Found at i:690240 original size:14 final size:14
Alignment explanation
Indices: 690217--690275 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
690207 TAAAATTTAT
*
690217 ATAAAATAAATATA
1 ATAAATTAAATATA
*
690231 ATAAATTAAAATTTA
1 ATAAATT-AAATATA
690246 TATAAA-T-AA-ATA
1 -ATAAATTAAATATA
*
690258 ATAATTTAAATATA
1 ATAAATTAAATATA
690272 ATAA
1 ATAA
690276 TTATACGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
11 4 0.11
12 3 0.08
13 4 0.11
14 13 0.36
15 7 0.19
16 5 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAATTAAATATA
Found at i:690255 original size:20 final size:20
Alignment explanation
Indices: 690226--690275 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
690216 TATAAAATAA
690226 ATAT-AATAAATTAA-AATTT
1 ATATAAATAAA-TAATAATTT
690245 ATATAAATAAATAATAATTT
1 ATATAAATAAATAATAATTT
*
690265 AAATATAATAA
1 ATATA-AATAA
690276 TTATACGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 7 0.26
20 15 0.56
21 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATAAATAAATAATAATTT
Found at i:690530 original size:22 final size:22
Alignment explanation
Indices: 690499--690543 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
690489 TTATATTATA
*
690499 ATTTTTTTAAATA-CA-TAAAT
1 ATTTTTTTTAATATCATTAAAT
690519 ATTTTTTATTAATATCATTAAAT
1 ATTTTTT-TTAATATCATTAAAT
690542 AT
1 AT
690544 ATGTTAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 5 0.24
22 2 0.10
23 7 0.33
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTTTTTTAATATCATTAAAT
Found at i:692572 original size:22 final size:22
Alignment explanation
Indices: 692504--692576 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 22
692494 TATTGTTAAA
692504 AATA-TTAAAATATTATTTTATATT
1 AATATTTAAAATA-T-TTTTAT-TT
*
692528 AATATTT-ATATATTTTATAATTT
1 AATATTTAAAATATTTT-T-ATTT
692551 AAT-TTTAAAATACTTTTTATTT
1 AATATTTAAAATA-TTTTTATTT
692573 AATA
1 AATA
692577 AACAATTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
22 13 0.32
23 12 0.29
24 14 0.34
25 2 0.05
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (22 bp):
AATATTTAAAATATTTTTATTT
Found at i:693137 original size:2 final size:2
Alignment explanation
Indices: 693125--693171 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
693115 ACTAATTCTT
*
693125 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
693167 TA TA T
1 TA TA T
693172 TAGCACAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:695267 original size:13 final size:13
Alignment explanation
Indices: 695249--695278 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
695239 TATTTTAAAT
695249 AATAAAAAATATA
1 AATAAAAAATATA
695262 AATAAAAAATATA
1 AATAAAAAATATA
695275 AATA
1 AATA
695279 CTTAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AATAAAAAATATA
Found at i:695314 original size:15 final size:16
Alignment explanation
Indices: 695294--695339 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
695284 TTTTTTTTTC
695294 CTTTCTTCTCTTC-TT
1 CTTTCTTCTCTTCTTT
*
695309 CTTTCTTTTCTTCTTT
1 CTTTCTTCTCTTCTTT
695325 C-TT-TTCT-TTCTTT
1 CTTTCTTCTCTTCTTT
695338 CT
1 CT
695340 GCTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 7 0.26
14 3 0.11
15 14 0.52
16 3 0.11
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
CTTTCTTCTCTTCTTT
Found at i:695319 original size:12 final size:12
Alignment explanation
Indices: 695299--695339 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
695289 TTTTCCTTTC
*
695299 TTCTCTTCTTCT
1 TTCTTTTCTTCT
695311 TTCTTTTCTTCT
1 TTCTTTTCTTCT
695323 TTCTTTTCTTTCT
1 TTCTTTTC-TTCT
695336 TTCT
1 TTCT
695340 GCTAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 19 0.70
13 8 0.30
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TTCTTTTCTTCT
Found at i:695412 original size:15 final size:15
Alignment explanation
Indices: 695394--695423 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
695384 TAACTCATTT
*
695394 TAGATATATTTAAAA
1 TAGATATATATAAAA
695409 TAGATATATATAAAA
1 TAGATATATATAAAA
695424 AATTTAAACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (15 bp):
TAGATATATATAAAA
Found at i:695461 original size:23 final size:22
Alignment explanation
Indices: 695414--695461 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
695404 TAAAATAGAT
* * *
695414 ATATATAAAAAATTTAAACATA
1 ATATAAAAAAAATATAAACACA
695436 ATATAAAAAATAATATAAACACA
1 ATATAAAAAA-AATATAAACACA
695459 ATA
1 ATA
695462 CGAATATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (22 bp):
ATATAAAAAAAATATAAACACA
Found at i:695632 original size:10 final size:10
Alignment explanation
Indices: 695625--695685 Score: 60
Period size: 9 Copynumber: 6.5 Consensus size: 10
695615 GAATATAAGT
695625 ATATATAAAA
1 ATATATAAAA
695635 ATATAT-AAA
1 ATATATAAAA
695644 ATA-A-AATAA
1 ATATATAA-AA
* *
695653 AT-TATTAAT
1 ATATATAAAA
695662 ATATA-AAAA
1 ATATATAAAA
695671 ATATATAAAA
1 ATATATAAAA
695681 ATATA
1 ATATA
695686 ATATTTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
8 2 0.05
9 21 0.51
10 18 0.44
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
ATATATAAAA
Found at i:695665 original size:35 final size:34
Alignment explanation
Indices: 695624--695704 Score: 103
Period size: 33 Copynumber: 2.3 Consensus size: 34
695614 CGAATATAAG
695624 TATATATAAAAATATATAAAATAAAATAA-ATTATTAA
1 TATATA-AAAAATATAT-AAA-AAAATAATATT-TTAA
*
695661 TATATAAAAAATATATAAAAATATAATATTTTAA
1 TATATAAAAAATATATAAAAAAATAATATTTTAA
695695 -ATATAAAAAA
1 TATATAAAAAA
695705 AATTTCTTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
33 10 0.24
34 10 0.24
35 6 0.14
36 10 0.24
37 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (34 bp):
TATATAAAAAATATATAAAAAAATAATATTTTAA
Found at i:695682 original size:37 final size:33
Alignment explanation
Indices: 695624--695704 Score: 101
Period size: 37 Copynumber: 2.3 Consensus size: 33
695614 CGAATATAAG
695624 TATATATAAAAATATATAAAATAAAATAAATTATTAA
1 TATATA-AAAAATATATAAAATAAAAT--ATT-TTAA
*
695661 TATATAAAAAATATATAAAAATATAATATTTTAA
1 TATATAAAAAATATAT-AAAATAAAATATTTTAA
695695 -ATATAAAAAA
1 TATATAAAAAA
695705 AATTTCTTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
33 10 0.24
34 4 0.10
35 3 0.07
36 10 0.24
37 15 0.36
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (33 bp):
TATATAAAAAATATATAAAATAAAATATTTTAA
Found at i:695705 original size:35 final size:35
Alignment explanation
Indices: 695631--695707 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
695621 AAGTATATAT
*
695631 AAAAATATATAAAATAAAATAAATTATTAATATATA
1 AAAAATATATAAAATAAAAT-AATTATTAATATAAA
*
695667 AAAAATATATAAAAATATAAT-ATT-TTAAATATAAA
1 AAAAATATAT-AAAATAAAATAATTATT-AATATAAA
695702 AAAAAT
1 AAAAAT
695708 TTCTTTCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
34 2 0.05
35 16 0.43
36 10 0.27
37 9 0.24
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (35 bp):
AAAAATATATAAAATAAAATAATTATTAATATAAA
Found at i:695714 original size:4 final size:4
Alignment explanation
Indices: 695707--695781 Score: 77
Period size: 4 Copynumber: 19.8 Consensus size: 4
695697 ATAAAAAAAA
* *
695707 TTTC TTTC TTT- TTT- TTCC TTTT TTTC -TTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
* * *
695752 TTCC TTTA TTT- TTTC TTTT TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
695782 TTCAGCTGAA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
3 11 0.19
4 48 0.81
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTC
Found at i:695748 original size:12 final size:12
Alignment explanation
Indices: 695707--695781 Score: 77
Period size: 11 Copynumber: 6.6 Consensus size: 12
695697 ATAAAAAAAA
695707 TTTCTTTCTTT-
1 TTTCTTTCTTTC
* *
695718 TTT-TTCCTTTT
1 TTTCTTTCTTTC
695729 TTTC-TTCTTTC
1 TTTCTTTCTTTC
695740 TTTCTTTCTTTC
1 TTTCTTTCTTTC
* *
695752 TTCCTTTATTT-
1 TTTCTTTCTTTC
*
695763 TTTCTTTTTTTC
1 TTTCTTTCTTTC
695775 TTTCTTT
1 TTTCTTT
695782 TTCAGCTGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
10 6 0.11
11 24 0.45
12 23 0.43
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTCTTTCTTTC
Found at i:697161 original size:2 final size:2
Alignment explanation
Indices: 697148--697186 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
697138 AGTGCAGGAC
*
697148 GA GA GC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
697187 GGCAAAGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.03, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:697624 original size:2 final size:2
Alignment explanation
Indices: 697619--697643 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
697609 GTGTGTGTGT
697619 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
697644 GGGAGGGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:697697 original size:13 final size:13
Alignment explanation
Indices: 697678--697715 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
697668 CCCAAAGTTG
697678 TTTCATCGATCATA
1 TTTCATC-ATCATA
697692 -TTCATCATTCATA
1 TTTCATCA-TCATA
697705 TTTCATCATCA
1 TTTCATCATCA
697716 GAATCGTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.05
13 14 0.64
14 7 0.32
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.45
Consensus pattern (13 bp):
TTTCATCATCATA
Found at i:706489 original size:24 final size:24
Alignment explanation
Indices: 706462--706536 Score: 75
Period size: 23 Copynumber: 3.2 Consensus size: 24
706452 CACTTATATC
706462 ATAATATTTTATAATATAAAT-TAA
1 ATAATATTTTAT-ATATAAATATAA
* *
706486 ATAATA-TTTATATTTATATATAA
1 ATAATATTTTATATATAAATATAA
* *
706509 ATAATA-TATATATATATGATATAA
1 ATAATATTTTATATATA-AATATAA
706533 ATAA
1 ATAA
706537 AATATAAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
22 6 0.14
23 22 0.50
24 16 0.36
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (24 bp):
ATAATATTTTATATATAAATATAA
Found at i:706509 original size:23 final size:24
Alignment explanation
Indices: 706483--706542 Score: 86
Period size: 23 Copynumber: 2.5 Consensus size: 24
706473 TAATATAAAT
* *
706483 TAAATAATATTTATATTTAT-ATA
1 TAAATAATATATATATATATGATA
706506 TAAATAATATATATATATATGATA
1 TAAATAATATATATATATATGATA
*
706530 TAAATAAAATATA
1 TAAATAATATATA
706543 AAATTAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 18 0.55
24 15 0.45
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
TAAATAATATATATATATATGATA
Found at i:706517 original size:11 final size:11
Alignment explanation
Indices: 706471--706544 Score: 53
Period size: 11 Copynumber: 6.5 Consensus size: 11
706461 CATAATATTT
706471 TATAATATAA-A
1 TATAA-ATAATA
706482 T-TAAATAATA
1 TATAAATAATA
* * *
706492 TTTATATTTATA
1 TATA-AATAATA
706504 TATAAATAATA
1 TATAAATAATA
*
706515 TATATATATATGA
1 TATAAATA-AT-A
*
706528 TATAAATAAAA
1 TATAAATAATA
706539 TATAAA
1 TATAAA
706545 ATTAATTAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
9 4 0.08
10 5 0.10
11 22 0.44
12 11 0.22
13 8 0.16
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (11 bp):
TATAAATAATA
Found at i:715552 original size:3 final size:3
Alignment explanation
Indices: 715544--715571 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
715534 CAGCACCCAT
715544 CAA CAA CAA CAA CAA CAA CAA CAA CAA C
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA C
715572 CACCACCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:716964 original size:2 final size:2
Alignment explanation
Indices: 716957--716988 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
716947 CAAACGTGAA
716957 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
716989 GTTTTAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:717333 original size:18 final size:18
Alignment explanation
Indices: 717270--717336 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
717260 TAATTATATC
*
717270 TAAAATATTTTATATTTATA
1 TAAAAT-TTTAATA-TTATA
*
717290 TAAAAATTTAATA--A-A
1 TAAAATTTTAATATTATA
* *
717305 TTAAATATTAATATTATA
1 TAAAATTTTAATATTATA
717323 TAAAATTTTAATAT
1 TAAAATTTTAATAT
717337 ATAATATATA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
15 11 0.30
16 1 0.03
17 1 0.03
18 13 0.35
19 6 0.16
20 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAAATTTTAATATTATA
Found at i:717358 original size:15 final size:15
Alignment explanation
Indices: 717333--717374 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
717323 TAAAATTTTA
*
717333 ATATATAATATATATT
1 ATATATCATAT-TATT
717349 ATAT-TCATATTATT
1 ATATATCATATTATT
*
717363 TTATATCATATT
1 ATATATCATATT
717375 TTAATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 12 0.52
16 4 0.17
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATATCATATTATT
Found at i:719452 original size:14 final size:15
Alignment explanation
Indices: 719425--719453 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
719415 TAAAAATTAT
719425 TTTTTTAAAGTTTGA
1 TTTTTTAAAGTTTGA
719440 TTTTTTAAA-TTTGA
1 TTTTTTAAAGTTTGA
719454 AAAAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (15 bp):
TTTTTTAAAGTTTGA
Found at i:719468 original size:5 final size:5
Alignment explanation
Indices: 719458--719484 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
719448 ATTTGAAAAA
719458 ATATT ATATT ATATT ATATT ATATT AT
1 ATATT ATATT ATATT ATATT ATATT AT
719485 TTAAGACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATATT
Found at i:719532 original size:22 final size:22
Alignment explanation
Indices: 719504--719550 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
719494 GTTAAAATAT
* *
719504 TAATTTTA-ATTTAATATTTATA
1 TAATTTTATAATTAA-ATTTAAA
719526 TAATTTTATAATTAAATTTAAA
1 TAATTTTATAATTAAATTTAAA
719548 TAA
1 TAA
719551 AATAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TAATTTTATAATTAAATTTAAA
Found at i:719812 original size:3 final size:3
Alignment explanation
Indices: 719806--719860 Score: 94
Period size: 3 Copynumber: 18.3 Consensus size: 3
719796 ATATTAACTG
719806 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GA-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
719854 ATA ATA A
1 ATA ATA A
719861 ATAAATTCCA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
2 1 0.02
3 48 0.96
4 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:726785 original size:57 final size:57
Alignment explanation
Indices: 726697--726807 Score: 204
Period size: 57 Copynumber: 1.9 Consensus size: 57
726687 CTGATGCTGA
726697 ATGGGTGAGAAAACTGGATAACAAACATGTTTGCAATAATCAGAAGCAGGTTTCCAT
1 ATGGGTGAGAAAACTGGATAACAAACATGTTTGCAATAATCAGAAGCAGGTTTCCAT
* *
726754 ATGGGTGAGAAAACTGGATGACAAACATGTTTGCAGTAATCAGAAGCAGGTTTC
1 ATGGGTGAGAAAACTGGATAACAAACATGTTTGCAATAATCAGAAGCAGGTTTC
726808 GATTTCTATC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (57 bp):
ATGGGTGAGAAAACTGGATAACAAACATGTTTGCAATAATCAGAAGCAGGTTTCCAT
Found at i:735374 original size:15 final size:14
Alignment explanation
Indices: 735350--735383 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
735340 ATTTTAATTA
735350 ATAATTTTTATATG
1 ATAATTTTTATATG
735364 ATAATTTTT-TAT-
1 ATAATTTTTATATG
735376 ATAATTTT
1 ATAATTTT
735384 CATAGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 3 0.15
14 9 0.45
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (14 bp):
ATAATTTTTATATG
Found at i:742941 original size:16 final size:16
Alignment explanation
Indices: 742907--742958 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
742897 TTATTTTTTG
* * *
742907 TTTAAGTTGTATTAGA
1 TTTAAATTGTTTTAAA
*
742923 TTTGAATTGTTTTAAA
1 TTTAAATTGTTTTAAA
* *
742939 TTTAAATTTTTTTGAA
1 TTTAAATTGTTTTAAA
742955 TTTA
1 TTTA
742959 GTTTTTTTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (16 bp):
TTTAAATTGTTTTAAA
Found at i:743363 original size:2 final size:2
Alignment explanation
Indices: 743356--743381 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
743346 GCAAATAATC
743356 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
743382 CACAATGCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:745845 original size:6 final size:6
Alignment explanation
Indices: 745834--745859 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
745824 ATTAGCACCG
745834 ATGATC ATGATC ATGATC ATGATC AT
1 ATGATC ATGATC ATGATC ATGATC AT
745860 CAGAGCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (6 bp):
ATGATC
Found at i:746883 original size:17 final size:18
Alignment explanation
Indices: 746861--746894 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
746851 TTATATAATT
*
746861 ATTT-AAATATATAAAAA
1 ATTTAAAATAAATAAAAA
746878 ATTTAAAATAAATAAAA
1 ATTTAAAATAAATAAAA
746895 TATAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
ATTTAAAATAAATAAAAA
Found at i:747395 original size:15 final size:16
Alignment explanation
Indices: 747376--747418 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
747366 TTGAGAAAAA
*
747376 AAAATTATAAGATTTT
1 AAAATTATAAAATTTT
747392 -AAATT-TAAAATTTT
1 AAAATTATAAAATTTT
*
747406 AAAATTATTAAAT
1 AAAATTATAAAAT
747419 ATTATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 8 0.35
15 10 0.43
16 5 0.22
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
AAAATTATAAAATTTT
Found at i:755169 original size:2 final size:2
Alignment explanation
Indices: 755162--755206 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
755152 TCGAGCCATA
755162 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
755204 AG A
1 AG A
755207 ACAAAACCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:757141 original size:23 final size:24
Alignment explanation
Indices: 757115--757161 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
757105 TTTTTTAAAA
757115 AAAATTAAAATAAT-AAAAATTTT
1 AAAATTAAAATAATAAAAAATTTT
**
757138 AAAATTAATTTAATAAAAAATTTT
1 AAAATTAAAATAATAAAAAATTTT
757162 CAATACGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAATTAAAATAATAAAAAATTTT
Found at i:760924 original size:18 final size:18
Alignment explanation
Indices: 760901--760936 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
760891 AAAAGCAAGA
760901 GCCATTAACAAACATTCC
1 GCCATTAACAAACATTCC
760919 GCCATTAACAAACATTCC
1 GCCATTAACAAACATTCC
760937 AAAGCAGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.33, G:0.06, T:0.22
Consensus pattern (18 bp):
GCCATTAACAAACATTCC
Found at i:763502 original size:29 final size:30
Alignment explanation
Indices: 763463--763522 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
763453 TCATTTATAT
** *
763463 TAAATATTTTATTTAGGTATAATTTAAAAA
1 TAAATATTTTATTTAAATATAAATTAAAAA
763493 TAAATA-TTTATTTAAATATAAATTAAAAA
1 TAAATATTTTATTTAAATATAAATTAAAAA
763522 T
1 T
763523 TTATCTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (30 bp):
TAAATATTTTATTTAAATATAAATTAAAAA
Found at i:763524 original size:23 final size:23
Alignment explanation
Indices: 763487--763539 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
763477 AGGTATAATT
* *
763487 TAAAAA-TAAATATTTATTTAAA
1 TAAAAATTAAAAATTTATCTAAA
*
763509 TATAAATTAAAAATTTATCTAAA
1 TAAAAATTAAAAATTTATCTAAA
763532 TAAAAATT
1 TAAAAATT
763540 TTACTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAAAATTAAAAATTTATCTAAA
Found at i:763663 original size:17 final size:17
Alignment explanation
Indices: 763634--763668 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
763624 CTTTTACGTG
763634 TAAAAGATTTATTTATAT
1 TAAAAGATTTATTT-TAT
763652 TAAAAG-TTTATTTTAT
1 TAAAAGATTTATTTTAT
763668 T
1 T
763669 TATGTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 7 0.41
18 6 0.35
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
TAAAAGATTTATTTTAT
Found at i:763704 original size:29 final size:29
Alignment explanation
Indices: 763664--763769 Score: 106
Period size: 29 Copynumber: 3.5 Consensus size: 29
763654 AAAGTTTATT
* * *
763664 TTATTTATGTATAATTTAAAAGTAAAAAA
1 TTATTTAAGTATAAATTAAAATTAAAAAA
* *
763693 TTATTTAAGTATAAATTAATAATTAATAAT
1 TTATTTAAGTATAAATTAA-AATTAAAAAA
763723 TTA-TTAAGATATAAATTAAAATTTTAAAAAAA
1 TTATTTAAG-TATAAATTAAAA--TT-AAAAAA
*
763755 TTATTTAAATATAAA
1 TTATTTAAGTATAAA
763770 AATATAAATA
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
29 24 0.38
30 20 0.32
31 2 0.03
32 13 0.21
33 4 0.06
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (29 bp):
TTATTTAAGTATAAATTAAAATTAAAAAA
Found at i:763784 original size:26 final size:26
Alignment explanation
Indices: 763755--763804 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
763745 TTTAAAAAAA
*
763755 TTATTTAAATATAA-AAATATAAATAT
1 TTATTTAAATAAAATAAATA-AAATAT
763781 TTATTTAAATAAAATAAATAAAAT
1 TTATTTAAATAAAATAAATAAAAT
763805 TTGAAGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
TTATTTAAATAAAATAAATAAAATAT
Found at i:764611 original size:3 final size:3
Alignment explanation
Indices: 764605--764630 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
764595 AATTATTACC
764605 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
764631 GCAAATTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:764975 original size:19 final size:20
Alignment explanation
Indices: 764960--765008 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
764950 TAAAATATAT
*
764960 ATATTT-TATTTTAATATTA
1 ATATTTATAATTTAATATTA
764979 ATATTTATAATTTAAT-TTA
1 ATATTTATAATTTAATATTA
*
764998 A-ATTTAAAATT
1 ATATTTATAATT
765009 AAAAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 9 0.33
19 10 0.37
20 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATATTTATAATTTAATATTA
Found at i:765004 original size:25 final size:25
Alignment explanation
Indices: 764944--765004 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
764934 ATTATTATTA
*
764944 AAATATTAAAATATATATATTTTATTT
1 AAATATT--AATATATATATTTAATTT
* *
764971 TAATATTAATATTTATAATTTAATTT
1 AAATATTAATATATAT-ATTTAATTT
764997 AAAT-TTAA
1 AAATATTAA
765005 AATTAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 12 0.41
26 11 0.38
27 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
AAATATTAATATATATATTTAATTT
Found at i:765510 original size:21 final size:21
Alignment explanation
Indices: 765473--765513 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
765463 AATATTTTAA
*
765473 AAATATTATTTATTTAAATTT
1 AAATATTATTTACTTAAATTT
765494 AAAT-TTATTCTACTTAAATT
1 AAATATTATT-TACTTAAATT
765514 ATCTTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (21 bp):
AAATATTATTTACTTAAATTT
Found at i:765574 original size:19 final size:19
Alignment explanation
Indices: 765537--765575 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
765527 TTTTAATAAT
*
765537 TTAAATTAATTTAATTCAA
1 TTAAATTAATTAAATTCAA
765556 TTAAATT-ATTAAATATCAA
1 TTAAATTAATTAAAT-TCAA
765575 T
1 T
765576 ATTTCATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTAAATTAATTAAATTCAA
Found at i:765585 original size:49 final size:51
Alignment explanation
Indices: 765484--765587 Score: 119
Period size: 49 Copynumber: 2.1 Consensus size: 51
765474 AATATTATTT
* *
765484 ATTTAAATTTAAATTTATTCTACTTAAATTATCTTAAATAATATTTTAATA
1 ATTTAAATTTAAATTTATTCTAATTAAATTATCTAAAATAATATTTTAATA
*
765535 ATTTAAA-TT-AATTTAATTC-AATTAAATTAT-TAAATATCAATA-TTTCATA
1 ATTTAAATTTAAATTT-ATTCTAATTAAATTATCTAAA-AT-AATATTTTAATA
765584 ATTT
1 ATTT
765588 TTTATGCATA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
48 3 0.06
49 27 0.57
50 10 0.21
51 7 0.15
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (51 bp):
ATTTAAATTTAAATTTATTCTAATTAAATTATCTAAAATAATATTTTAATA
Found at i:765600 original size:2 final size:2
Alignment explanation
Indices: 765595--765627 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
765585 TTTTTTATGC
765595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
765628 AACAATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:766125 original size:20 final size:18
Alignment explanation
Indices: 766092--766138 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
766082 TTTATATATT
766092 AAAAAAT-T-AATATTTA
1 AAAAAATATAAATATTTA
*
766108 AATATAAATATAAATATTTT
1 AA-A-AAATATAAATATTTA
766128 AAAAAATATAA
1 AAAAAATATAA
766139 TTATATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 2 0.08
17 1 0.04
18 12 0.46
19 2 0.08
20 9 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAAATATAAATATTTA
Found at i:766144 original size:20 final size:18
Alignment explanation
Indices: 766085--766151 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 18
766075 TAATTTTTTT
*
766085 ATATATTAAAAAAT-T-A
1 ATATTTTAAAAAATATAA
*
766101 ATATTTAAATATAAATATAA
1 ATATTTTAA-A-AAATATAA
766121 ATATTTTAAAAAATATAA
1 ATATTTTAAAAAATATAA
766139 TTATATTTTAAAA
1 --ATATTTTAAAA
766152 TTTTAGTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
16 7 0.17
17 1 0.02
18 12 0.29
19 2 0.05
20 20 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATTTTAAAAAATATAA
Found at i:766152 original size:18 final size:17
Alignment explanation
Indices: 766113--766151 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 17
766103 ATTTAAATAT
766113 AAATATAAATATTTTAAA
1 AAATATAAATATTTT-AA
766131 AAATATAATTATATTTTAA
1 AAATATAA--ATATTTTAA
766150 AA
1 AA
766152 TTTTAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 4 0.21
20 7 0.37
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATAAATATTTTAA
Found at i:766366 original size:19 final size:19
Alignment explanation
Indices: 766337--766394 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
766327 AAAATATGTA
766337 TTATATA-TAAAATTATAT
1 TTATATATTAAAATTATAT
* *
766355 TTATTTTTTAAAATT-TAT
1 TTATATATTAAAATTATAT
*
766373 TATATATATAAAAATTATAT
1 T-TATATATTAAAATTATAT
766393 TT
1 TT
766395 TTATGTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 9 0.28
19 19 0.59
20 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTATATATTAAAATTATAT
Found at i:766422 original size:40 final size:36
Alignment explanation
Indices: 766338--766420 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 36
766328 AAATATGTAT
766338 TATATAT-AAAATTATATTTATTTTTTAAAATTTATTA
1 TATATATAAAAATTATATTTATTTTTT--AATTTATTA
*
766375 TATATATAAAAATTATATTTTTATGTTTTT-ATTTAATA
1 TATATATAAAAATTATA--TTTAT-TTTTTAATTTATTA
766413 TATATATA
1 TATATATA
766421 TATTCAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
37 7 0.17
38 24 0.59
40 5 0.12
41 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (36 bp):
TATATATAAAAATTATATTTATTTTTTAATTTATTA
Found at i:770453 original size:37 final size:37
Alignment explanation
Indices: 770403--770482 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
770393 GGAATAAAAC
770403 CAAAAA-GAAGAAACAGACCACATCTTCACACTCACT
1 CAAAAAGGAAGAAACAGACCACATCTTCACACTCACT
* * * *
770439 TAAAAAGGAAGAAACAGACCATATCTTCTCACTCAGT
1 CAAAAAGGAAGAAACAGACCACATCTTCACACTCACT
770476 CAAAAAG
1 CAAAAAG
770483 AATATTGCGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
36 5 0.13
37 33 0.87
ACGTcount: A:0.47, C:0.25, G:0.11, T:0.16
Consensus pattern (37 bp):
CAAAAAGGAAGAAACAGACCACATCTTCACACTCACT
Found at i:772434 original size:21 final size:19
Alignment explanation
Indices: 772409--772451 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
772399 ATAACGACAC
772409 AAACAATCGAAACAAAAATAG
1 AAACAAT-GAAA-AAAAATAG
*
772430 AAACAATGAAAACAAATAG
1 AAACAATGAAAAAAAATAG
772449 AAA
1 AAA
772452 GAGAGAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
20 4 0.19
21 7 0.33
ACGTcount: A:0.70, C:0.12, G:0.09, T:0.09
Consensus pattern (19 bp):
AAACAATGAAAAAAAATAG
Found at i:772712 original size:5 final size:5
Alignment explanation
Indices: 772697--772737 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
772687 TCCTTATCTG
772697 TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA -TTTA -TTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
772738 TCGAGATGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 12 0.35
5 22 0.65
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:772717 original size:10 final size:9
Alignment explanation
Indices: 772697--772737 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
772687 TCCTTATCTG
772697 TTTTATTTA
1 TTTTATTTA
772706 TTTTATTTTA
1 TTTTA-TTTA
772716 TTTTATTT-
1 TTTTATTTA
772724 TATTTATTTA
1 T-TTTATTTA
772734 TTTT
1 TTTT
772738 TCGAGATGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 1 0.03
9 18 0.62
10 10 0.34
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTATTTA
Found at i:773190 original size:32 final size:31
Alignment explanation
Indices: 773154--773214 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
773144 CATAATTAAT
773154 ATATTAAATATTA-ATTTTTTAAAATTTATAAA
1 ATATT-AATATTATA-TTTTTAAAATTTATAAA
* *
773186 ATATTATTATTTTATTTTTAAAATTTATA
1 ATATTAATATTATATTTTTAAAATTTATA
773215 TTTGATTCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (31 bp):
ATATTAATATTATATTTTTAAAATTTATAAA
Found at i:773207 original size:22 final size:20
Alignment explanation
Indices: 773177--773217 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
773167 ATTTTTTAAA
773177 ATTTATAAAATATTATTATTTT
1 ATTTATAAAAT-TTA-TATTTT
*
773199 ATTTTTAAAATTTATATTT
1 ATTTATAAAATTTATATTT
773218 GATTCGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTATAAAATTTATATTTT
Found at i:775095 original size:13 final size:15
Alignment explanation
Indices: 775057--775097 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
775047 ATAATTATGT
775057 TAAATTTAAA-AAGA
1 TAAATTTAAATAAGA
775071 TAAATATTAAATAA-A
1 TAAAT-TTAAATAAGA
775086 -AAATTTAAATAA
1 TAAATTTAAATAA
775098 CTTACGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.32
14 9 0.36
15 6 0.24
16 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (15 bp):
TAAATTTAAATAAGA
Found at i:775297 original size:14 final size:14
Alignment explanation
Indices: 775278--775321 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
775268 TTTAATTAAA
*
775278 AATATATTTATATT
1 AATATATTTATAAT
*
775292 AATATATTTTTAAT
1 AATATATTTATAAT
775306 AATATA-TTA-AAT
1 AATATATTTATAAT
775318 AATA
1 AATA
775322 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 7 0.26
13 2 0.07
14 18 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATATATTTATAAT
Found at i:775298 original size:16 final size:14
Alignment explanation
Indices: 775273--775313 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
775263 TTAAATTTAA
*
775273 TTAAAAATATATTT
1 TTAATAATATATTT
* *
775287 ATATTAATATATTT
1 TTAATAATATATTT
775301 TTAATAATATATT
1 TTAATAATATATT
775314 AAATAATAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTAATAATATATTT
Found at i:782323 original size:22 final size:21
Alignment explanation
Indices: 782277--782337 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
782267 TATAAAATTA
* *
782277 AAATTAATAATAATACATATTT
1 AAATTAAAAATAATA-ATATGT
782299 AAATTAAAAATAATAATAATGT
1 AAATTAAAAATAATAAT-ATGT
* *
782321 AAAATAAATTATAATAA
1 AAATTAAA-AATAATAA
782338 AAAATATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 2 0.06
22 24 0.73
23 7 0.21
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
AAATTAAAAATAATAATATGT
Found at i:782968 original size:3 final size:3
Alignment explanation
Indices: 782960--782984 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
782950 CTATTCAAAC
782960 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
782985 TAGCCATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:783243 original size:23 final size:23
Alignment explanation
Indices: 783217--783262 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
783207 AAGTTACTTT
* * *
783217 TAAATATGATCTAATATATTTAA
1 TAAATACGATATAATATAATTAA
783240 TAAATACGATATAATATAATTAA
1 TAAATACGATATAATATAATTAA
783263 ATATAAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (23 bp):
TAAATACGATATAATATAATTAA
Found at i:784013 original size:24 final size:26
Alignment explanation
Indices: 783974--784023 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
783964 AGCAATGTTT
*
783974 TAAAATTTAATAAAAATATA-ATTAC
1 TAAAATTAAATAAAAATATATATTAC
783999 TAAAATTAAATAAAAATATATATTA
1 TAAAATTAAATAAAAATATATATTA
784024 ATTTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (26 bp):
TAAAATTAAATAAAAATATATATTAC
Found at i:784040 original size:23 final size:22
Alignment explanation
Indices: 784004--784046 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
783994 ATTACTAAAA
784004 TTAAATAAAAATATATATTAATT
1 TTAAATAAAAATATAT-TTAATT
* *
784027 TTAAATTAATATATATTTAA
1 TTAAATAAAAATATATTTAA
784047 AAATATAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TTAAATAAAAATATATTTAATT
Found at i:784809 original size:19 final size:18
Alignment explanation
Indices: 784793--784848 Score: 76
Period size: 19 Copynumber: 3.0 Consensus size: 18
784783 AATTAATAAA
784793 AATTAATATAATAAATAT
1 AATTAATATAATAAATAT
*
784811 AATATAATATATTTAAATAT
1 AAT-TAATATA-ATAAATAT
*
784831 AATTAATATAATATATAT
1 AATTAATATAATAAATAT
784849 TTATAGTTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 9 0.27
19 14 0.42
20 10 0.30
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTAATATAATAAATAT
Found at i:784811 original size:9 final size:9
Alignment explanation
Indices: 784797--784848 Score: 59
Period size: 9 Copynumber: 5.6 Consensus size: 9
784787 AATAAAAATT
784797 AATATAATA
1 AATATAATA
784806 AATATAATA
1 AATATAATA
*
784815 TAATATATTTA
1 -AATATA-ATA
*
784826 AATATAATT
1 AATATAATA
784835 AATATAATA
1 AATATAATA
*
784844 TATAT
1 AATAT
784849 TTATAGTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
9 22 0.61
10 12 0.33
11 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATATAATA
Found at i:784813 original size:14 final size:14
Alignment explanation
Indices: 784782--784845 Score: 67
Period size: 14 Copynumber: 4.5 Consensus size: 14
784772 GTAATACTTT
*
784782 TAAT-TAATAAAAA
1 TAATATAATAAATA
784795 TTAATATAATAAATA
1 -TAATATAATAAATA
* *
784810 TAATATAATATATT
1 TAATATAATAAATA
*
784824 TAAATATAATTAATA
1 T-AATATAATAAATA
784839 TAATATA
1 TAATATA
784846 TATTTATAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
14 23 0.55
15 19 0.45
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TAATATAATAAATA
Found at i:784814 original size:5 final size:5
Alignment explanation
Indices: 784796--784845 Score: 61
Period size: 5 Copynumber: 10.4 Consensus size: 5
784786 TAATAAAAAT
*
784796 TAATA TAATA -AATA TAATA TAATA T-ATT TAAATA TAAT- TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA T-AATA TAATA TAATA TAATA
784844 TA
1 TA
784846 TATTTATAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 11 0.28
5 25 0.64
6 3 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAATA
Found at i:789160 original size:2 final size:2
Alignment explanation
Indices: 789153--789178 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
789143 ACTGGCCATA
789153 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
789179 TATCTTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:799569 original size:16 final size:18
Alignment explanation
Indices: 799545--799583 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
799535 TTATTTATTC
*
799545 AATTAATATAA-TAAA-T
1 AATTTATATAATTAAAGT
799561 AATTTATATAATTAAAGT
1 AATTTATATAATTAAAGT
799579 AATTT
1 AATTT
799584 TATTTATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 4 0.20
18 6 0.30
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
AATTTATATAATTAAAGT
Found at i:800181 original size:31 final size:31
Alignment explanation
Indices: 800146--800211 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
800136 AATAGTCCTT
* *
800146 AGTCCATATCTCCCCTTTATTTTCCC-TTTTA
1 AGTCCATAT-TACCCTTTATTTGCCCTTTTTA
* *
800177 AGTCCATGTTACCTTTTATTTGCCCTTTTTA
1 AGTCCATATTACCCTTTATTTGCCCTTTTTA
800208 AGTC
1 AGTC
800212 ACACCATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.17, C:0.27, G:0.08, T:0.48
Consensus pattern (31 bp):
AGTCCATATTACCCTTTATTTGCCCTTTTTA
Found at i:803505 original size:21 final size:19
Alignment explanation
Indices: 803478--803527 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 19
803468 ATTTTGTAAT
803478 TTAAATAAATTTATTTAAA
1 TTAAATAAATTTATTTAAA
*
803497 TAATAAATATTATTTTATTTAAA
1 T--TAAATA--AATTTATTTAAA
803520 TTAAATAA
1 TTAAATAA
803528 TGATATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
19 2 0.08
21 12 0.46
23 12 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAAATAAATTTATTTAAA
Found at i:803835 original size:3 final size:3
Alignment explanation
Indices: 803827--803861 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
803817 AGAAATTCAA
803827 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
803862 AAACAATTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:804071 original size:19 final size:18
Alignment explanation
Indices: 804043--804079 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
804033 TTAATTCCAT
*
804043 TAAAATAATTAATTAAATA
1 TAAAAAAATTAA-TAAATA
804062 TAAAAAAATTAATAAATA
1 TAAAAAAATTAATAAATA
804080 CTTATAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAAAAATTAATAAATA
Found at i:805217 original size:20 final size:19
Alignment explanation
Indices: 805186--805237 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 19
805176 TGCTCTGACT
805186 TATTTTTT-TTTTTTAAAA
1 TATTTTTTATTTTTTAAAA
805204 TATTATTTTATTTTTTAAAA
1 TATT-TTTTATTTTTTAAAA
*
805224 TATTTTATATTTTT
1 TATTTTTTATTTTT
805238 ATATATTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
18 4 0.13
19 13 0.42
20 14 0.45
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTTTTATTTTTTAAAA
Found at i:805460 original size:2 final size:2
Alignment explanation
Indices: 805453--805479 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
805443 CATATTTAGC
805453 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
805480 TTGCTTTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:807689 original size:20 final size:20
Alignment explanation
Indices: 807661--807705 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
807651 AAAATTAAAT
807661 TTAAATAAA-AATTAATTTTA
1 TTAAATAAATAA-TAATTTTA
*
807681 TTAATTAAATAATAATTTTA
1 TTAAATAAATAATAATTTTA
*
807701 ATAAA
1 TTAAA
807706 ACTTAAACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAAATAAATAATAATTTTA
Found at i:811134 original size:1 final size:1
Alignment explanation
Indices: 811128--811152 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
811118 ATTTGTATGG
811128 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
811153 GCTTCCTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:813468 original size:16 final size:15
Alignment explanation
Indices: 813444--813491 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
813434 ATATTTAATA
813444 TAAAATTTAATATAT
1 TAAAATTTAATATAT
* *
813459 TAATAATTTATTTTAT
1 TAA-AATTTAATATAT
*
813475 ATAAATTTTAATATAT
1 -TAAAATTTAATATAT
813491 T
1 T
813492 TATGTATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
15 4 0.15
16 19 0.73
17 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TAAAATTTAATATAT
Found at i:815896 original size:38 final size:38
Alignment explanation
Indices: 815844--815934 Score: 148
Period size: 38 Copynumber: 2.4 Consensus size: 38
815834 TTGTTGTTAG
*
815844 CCTAAA-TACCTTTTAGTTATGAGTTGTAAATTTCACT
1 CCTAAACTATCTTTTAGTTATGAGTTGTAAATTTCACT
*
815881 CCTAAACTATCTTTTAGTTATTAGTTGTAAATTTCACT
1 CCTAAACTATCTTTTAGTTATGAGTTGTAAATTTCACT
*
815919 CCTAAACTATTTTTTA
1 CCTAAACTATCTTTTA
815935 TACACGATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 6 0.12
38 44 0.88
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (38 bp):
CCTAAACTATCTTTTAGTTATGAGTTGTAAATTTCACT
Found at i:817024 original size:13 final size:15
Alignment explanation
Indices: 817008--817040 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
816998 TAATTTATAT
817008 ATTTAT-TTTAA-AA
1 ATTTATATTTAATAA
817021 ATTTATATTTAATAA
1 ATTTATATTTAATAA
817036 ATTTA
1 ATTTA
817041 AAATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 5 0.28
15 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTATATTTAATAA
Found at i:817048 original size:23 final size:23
Alignment explanation
Indices: 817014--817057 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
817004 ATATATTTAT
817014 TTTAAAAATTT-ATATTTAATAAA
1 TTTAAAAATTTAAT-TTTAATAAA
*
817037 TTTAAAATTTTAATTTTAATA
1 TTTAAAAATTTAATTTTAATA
817058 TTTGTGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAAAAATTTAATTTTAATAAA
Done.