genome.fa.s1360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1360
Parameters: 2 7 7 80 10 50 1000
Length:  91214

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6796--6820	13	1.9	13	100	0	50	32	20	16	32	1.94
6809--6860	20	2.7	20	87	3	70	32	15	17	34	1.91
6892--6956	33	2.0	33	84	6	87	33	13	16	35	1.89
12816--12859	20	2.3	20	84	7	56	27	2	20	50	1.60
12956--12982	13	2.1	13	100	0	54	29	14	14	40	1.86
14855--14896	22	1.9	22	90	0	66	40	4	30	23	1.75
14863--14938	22	3.5	21	84	10	91	39	2	30	27	1.70
15574--15606	13	2.5	13	95	0	57	33	15	15	36	1.88
19126--19155	14	2.1	14	93	0	51	26	10	6	56	1.57
19687--20209	166	3.1	161	81	7	591	33	10	13	42	1.80
20765--20861	19	5.8	18	71	27	88	34	12	16	37	1.86
20767--20866	32	3.1	32	97	0	182	35	12	17	36	1.86
20786--20842	13	3.9	13	76	24	60	35	14	17	33	1.90
20947--21127	52	3.5	52	93	0	299	35	18	17	28	1.93
22616--22642	13	2.1	13	100	0	54	29	14	14	40	1.86
25193--25230	13	2.9	13	88	0	58	31	13	18	36	1.89
29110--29154	21	2.1	21	84	8	56	22	20	4	53	1.63
31364--31389	13	2.0	13	100	0	52	30	15	15	38	1.88
31344--31407	32	2.0	33	87	3	94	28	14	17	40	1.88
35773--35824	19	2.7	19	81	3	59	28	19	13	38	1.89
42663--42762	49	2.1	47	83	10	125	33	19	26	22	1.97
42838--43388	28	18.9	28	84	7	636	23	17	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42852--43388	86	6.2	85	86	8	697	23	17	31	28	1.97
43237--43338	36	3.1	36	75	21	139	27	14	31	26	1.95
42839--43388	58	9.4	61	77	15	456	23	17	30	28	1.97
43179--43362	92	2.0	94	92	2	309	25	16	30	27	1.97
44603--44655	10	5.2	10	78	13	63	3	1	9	84	0.81
58656--58729	20	3.7	19	85	0	94	43	12	13	31	1.81
62768--63450	52	14.4	49	72	13	340	30	17	26	24	1.97
62807--63445	87	6.8	101	84	5	306	30	18	26	25	1.98
63097--63344	39	5.9	39	74	15	217	25	19	27	27	1.99
63136--63451	48	7.0	47	75	15	299	28	18	27	25	1.98
63045--63395	87	4.0	87	92	1	560	27	19	26	26	1.99
63310--63447	47	2.9	47	86	7	188	29	18	27	24	1.98
63457--63572	29	3.9	29	77	11	103	20	18	30	31	1.96
63457--63533	28	2.6	28	84	10	93	19	19	25	35	1.95
63467--63587	29	4.2	29	73	5	75	18	16	33	32	1.93
63565--64040	61	7.6	60	73	17	169	35	10	32	21	1.88
63632--64522	34	27.8	34	78	13	698	36	11	31	20	1.89
63631--64334	97	7.3	96	79	12	541	36	11	31	20	1.88
63613--64542	253	3.7	251	85	8	1124	36	11	31	20	1.89
63928--64398	233	2.1	219	87	7	667	37	12	31	19	1.88
64268--64596	155	2.1	156	86	6	465	35	13	29	21	1.91
64493--64678	30	6.1	30	83	8	207	32	13	30	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64372--64678	33	10.0	31	80	10	235	34	13	28	23	1.93
64516--64678	63	2.6	61	84	5	202	33	13	29	23	1.93
65954--65999	23	2.0	24	86	4	67	2	0	15	82	0.76
65962--66000	19	2.1	19	85	9	53	2	0	12	84	0.72
65970--66001	13	2.5	13	94	0	55	3	0	9	87	0.64
73847--74468	49	12.9	50	74	12	410	31	18	25	23	1.97
73856--74468	101	6.4	99	80	10	548	31	19	25	23	1.98
74155--74318	39	4.0	39	73	13	157	28	20	24	26	1.99
74193--74469	48	5.9	47	76	11	219	31	19	24	25	1.98
74101--74364	87	3.0	87	88	2	384	29	20	24	25	1.99
74279--74451	51	3.5	48	83	8	206	29	19	26	24	1.98
74488--74612	57	2.2	59	86	7	184	16	17	33	32	1.93
74488--74612	29	4.3	30	84	7	159	16	17	33	32	1.93
74586--74719	60	2.2	60	85	2	180	34	14	31	19	1.92
74621--74718	27	3.4	27	68	20	72	35	15	29	19	1.92
76867--76914	20	2.3	20	79	10	53	39	16	2	41	1.60
79314--79367	19	2.8	20	82	2	74	25	18	16	38	1.92
79412--79464	13	4.5	13	77	22	64	33	13	16	35	1.88
79396--79464	33	2.1	33	89	5	104	31	13	20	34	1.91
87379--87419	20	2.0	20	90	4	64	34	24	14	26	1.94
88745--88819	28	2.7	27	85	8	89	24	17	33	25	1.96
88965--89038	27	2.7	27	89	6	105	22	20	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88808--89146	51	6.4	51	69	14	170	32	12	24	30	1.92

Tables:   1

The End!