Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1362
Parameters: 2 7 7 80 10 50 1000
Length:  84528

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
731--776
2
23.0
2
100
0
92
50
0
50
0
1.00
4303--4335
2
16.5
2
93
0
57
54
0
0
45
0.99
6923--6960
20
1.9
20
100
0
76
18
7
10
63
1.50
9898--9930
17
1.9
17
93
0
57
42
0
0
57
0.98
10262--10296
7
4.9
7
89
3
52
48
0
0
51
1.00
10262--10307
14
3.1
15
84
9
67
50
2
0
47
1.13
10639--10682
23
1.9
23
90
9
72
63
0
0
36
0.95
10619--10939
121
2.7
121
90
2
477
46
4
4
44
1.45
10760--10803
23
1.9
23
90
9
72
63
0
0
36
0.95
13252--13560
50
6.2
50
87
0
395
33
20
16
28
1.95
13253--13560
100
3.1
99
86
0
436
33
20
16
28
1.95
13252--13560
150
2.1
149
88
0
456
33
20
16
28
1.95
18130--18390
50
5.3
50
76
7
174
41
16
9
33
1.80
18254--18435
99
1.8
100
82
5
235
48
10
3
36
1.57
18272--18435
50
3.3
50
79
5
172
50
11
1
36
1.50
20396--20464
34
2.0
34
100
0
138
17
20
2
59
1.50
21199--21234
2
18.0
2
100
0
72
50
0
0
50
1.00
25754--25806
14
3.8
13
76
16
52
41
0
1
56
1.10
25998--26033
19
1.9
19
88
5
56
38
0
2
58
1.13
29285--29319
18
2.0
17
88
5
52
77
2
0
20
0.90
29934--29980
23
2.0
25
87
8
71
55
2
0
42
1.12
30195--30234
21
1.9
21
85
10
55
30
0
2
67
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30251--30311
30
2.1
27
85
8
77
55
0
0
44
0.99
30441--30473
9
3.7
9
88
11
50
42
0
0
57
0.98
30515--30553
12
3.0
13
81
11
53
56
0
2
41
1.13
30841--30881
21
1.9
21
85
5
55
26
0
0
73
0.84
30831--30873
15
2.7
16
78
10
52
27
0
0
72
0.85
30891--30955
24
2.6
25
77
20
73
64
0
0
35
0.94
30946--31012
29
2.2
31
82
12
86
61
0
0
38
0.96
30969--31007
19
2.1
19
90
0
60
58
0
0
41
0.98
33588--33619
3
10.7
3
100
0
64
65
0
0
34
0.93
33984--34064
18
4.7
18
73
14
71
62
1
0
35
1.03
33969--34033
24
2.8
24
72
11
71
66
0
0
33
0.92
33965--34065
16
6.5
15
69
17
55
63
0
0
35
1.01
37358--37440
34
2.4
35
75
16
84
48
0
0
51
1.00
37379--37441
30
2.1
31
85
8
85
44
0
0
55
0.99
38402--38453
5
10.6
5
80
12
63
73
0
0
26
0.84
38402--38464
29
2.2
28
91
5
99
73
0
0
26
0.84
38374--38457
29
2.6
31
81
14
100
71
0
2
26
0.98
38580--38637
21
2.9
20
83
14
75
63
0
0
36
0.94
45415--45456
22
1.9
22
90
0
66
47
0
0
52
1.00
46345--46375
2
16.0
2
93
6
55
51
0
0
48
1.00
47866--47915
23
2.2
23
89
7
75
54
6
8
32
1.54
54016--54052
2
18.0
2
94
5
65
48
0
2
48
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59314--59345
15
2.1
15
100
0
64
43
12
21
21
1.86
61846--61967
19
7.1
18
65
28
52
58
0
0
40
1.04
61855--61916
11
5.7
11
73
16
58
61
0
0
38
0.96
61867--62005
32
4.3
33
84
7
178
54
0
2
43
1.12
62329--62403
26
3.0
26
83
11
79
46
0
1
52
1.09
65439--65467
2
14.5
2
100
0
58
0
48
0
51
1.00
67052--67077
3
8.7
3
100
0
52
34
34
0
30
1.58
67316--67342
2
13.5
2
100
0
54
48
0
0
51
1.00
69927--69964
2
19.0
2
100
0
76
50
0
0
50
1.00
70617--70667
26
2.0
27
88
7
79
43
5
0
50
1.26
71596--71648
17
3.1
17
77
0
61
64
0
1
33
1.05
72652--72693
14
3.1
14
80
16
52
61
0
0
38
0.96
72652--72693
20
2.0
21
90
4
68
61
0
0
38
0.96
73116--73155
18
2.2
18
90
0
62
62
0
2
35
1.09
75734--75776
2
21.5
2
100
0
86
48
0
0
51
1.00
76354--76435
33
2.5
31
82
9
85
47
3
0
48
1.19
76358--76435
32
2.5
29
78
15
75
47
3
0
48
1.20
77398--77435
9
3.9
10
83
16
53
26
0
2
71
1.00
81026--81079
6
9.5
6
75
18
53
33
1
14
50
1.54
81023--81083
10
5.8
10
77
11
50
34
1
14
49
1.54
81032--81083
10
5.3
10
76
4
52
30
1
17
50
1.57
83228--83254
3
9.0
3
100
0
54
33
33
0
33
1.58

Tables:   1

The End!