Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1363
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114652
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Found at i:3907 original size:14 final size:14
Alignment explanation
Indices: 3876--3924 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
3866 AATTTAAAAA
*
3876 AAATAATATTAAAT
1 AAATAATATTAAAC
* *
3890 AAATATTATTAACC
1 AAATAATATTAAAC
*
3904 AAATTAATATTAAAA
1 AAA-TAATATTAAAC
3919 AAATAA
1 AAATAA
3925 AATTTTGATT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATAATATTAAAC
Found at i:3922 original size:15 final size:15
Alignment explanation
Indices: 3869--3922 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
3859 GATTTTAAAT
*
3869 TTAAAAAAAATAATA
1 TTAAAAAAATTAATA
* *
3884 TTAAATAAA-TATTA
1 TTAAAAAAATTAATA
**
3898 TTAACCAAATTAATA
1 TTAAAAAAATTAATA
3913 TTAAAAAAAT
1 TTAAAAAAAT
3923 AAAATTTTGA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAAAAAAATTAATA
Found at i:5632 original size:2 final size:2
Alignment explanation
Indices: 5625--5671 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
5615 AACTAGCATC
5625 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5667 TA TA T
1 TA TA T
5672 CAATGTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11000 original size:15 final size:16
Alignment explanation
Indices: 10970--11002 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
10960 ATTTTTTTAA
*
10970 AATATAATTATAATTT
1 AATAAAATTATAATTT
10986 AATAAAATT-TAATTT
1 AATAAAATTATAATTT
11001 AA
1 AA
11003 AATTAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATAAAATTATAATTT
Found at i:11008 original size:21 final size:21
Alignment explanation
Indices: 10967--11009 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
10957 AAAATTTTTT
*
10967 TAAAATATAATTATAATTTAA
1 TAAAATATAATTATAAATTAA
*
10988 TAAAATTTAATT-TAAAATTAA
1 TAAAATATAATTAT-AAATTAA
11009 T
1 T
11010 TATTACAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAATATAATTATAAATTAA
Found at i:11212 original size:20 final size:22
Alignment explanation
Indices: 11173--11217 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
11163 TTAAAACATA
11173 ATTAAAAAGTATTGATATATACT
1 ATTAAAAAGTATTGATATATA-T
11196 ATTAAAAA-T-TT-ATATATAT
1 ATTAAAAAGTATTGATATATAT
11215 ATT
1 ATT
11218 TTTTACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.18
20 7 0.32
21 2 0.09
22 1 0.05
23 8 0.36
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTAAAAAGTATTGATATATAT
Found at i:11234 original size:21 final size:22
Alignment explanation
Indices: 11204--11261 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 22
11194 CTATTAAAAA
*
11204 TTTATATATATATTTT-T-TACT
1 TTTATTTATA-ATTTTATATACT
*
11225 TTTATTTATAATTTTATATATT
1 TTTATTTATAATTTTATATACT
11247 TTTATTT-T-ATTTTAT
1 TTTATTTATAATTTTAT
11262 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 12 0.36
21 11 0.33
22 10 0.30
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTATTTATAATTTTATATACT
Found at i:11254 original size:27 final size:27
Alignment explanation
Indices: 11210--11266 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
11200 AAAATTTATA
11210 TATATATTTTTTACTTTTATTTATAATTT
1 TATATATTTTTTACTTTTATTT-T-ATTT
11239 TATATA-TTTTTA-TTTTATTTTATTT
1 TATATATTTTTTACTTTTATTTTATTT
11264 TAT
1 TAT
11267 CTAATAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.25
26 1 0.04
27 8 0.29
28 6 0.21
29 6 0.21
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (27 bp):
TATATATTTTTTACTTTTATTTTATTT
Found at i:11602 original size:16 final size:17
Alignment explanation
Indices: 11581--11613 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
11571 TGATGATTAG
*
11581 TTAA-TTTAATAAAATT
1 TTAATTTTAAAAAAATT
11597 TTAATTTTAAAAAAATT
1 TTAATTTTAAAAAAATT
11614 AATATTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATTTTAAAAAAATT
Found at i:11631 original size:17 final size:16
Alignment explanation
Indices: 11581--11647 Score: 57
Period size: 16 Copynumber: 4.1 Consensus size: 16
11571 TGATGATTAG
*
11581 TTAAT-TTAATAAAATT
1 TTAATATTAA-AAAATA
*
11597 TTAATTTTAAAAAA-A
1 TTAATATTAAAAAATA
11612 TTAATATTAAATAAATA
1 TTAATATTAAA-AAATA
*
11629 TTATATATATTAAAAATA
1 TTA-ATAT-TAAAAAATA
11647 T
1 T
11648 GTATTTAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
15 10 0.23
16 12 0.28
17 8 0.19
18 10 0.23
19 3 0.07
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAATATTAAAAAATA
Found at i:14070 original size:23 final size:22
Alignment explanation
Indices: 14030--14082 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 22
14020 TTAAAAACTC
* *
14030 ATTATTTTTTTTAGTTTTCATTT
1 ATTATTTTATATAGTTTT-ATTT
*
14053 ATTATTTTATATATTTTTATTT
1 ATTATTTTATATAGTTTTATTT
14075 A--ATTTTAT
1 ATTATTTTAT
14083 TTTACATAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 7 0.26
22 5 0.19
23 15 0.56
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (22 bp):
ATTATTTTATATAGTTTTATTT
Found at i:16373 original size:983 final size:975
Alignment explanation
Indices: 14402--17716 Score: 4784
Period size: 983 Copynumber: 3.4 Consensus size: 975
14392 AAAATCAATT
* * *
14402 AAAAATACCCAATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAAAATTTAAAAAT-AAA
1 AAAAATACCTAATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAGAATTTGAAAATAAAA
* *
14466 AATAATTATAATGTAATAAAATTTAATTTAAAATTACTTATTACAATTAATTAATTTAAAAGTTA
66 AATAATTATAATGTAATAAAATTTAATTTAAAATTAATTATTACAATTAATTAATTAAAAAGTTA
* *
14531 TAAAGCCCCAATATGAATGGATTAAATGCTAGTATACATAAAAATACATATATATATATATATAT
131 TAGAGCCCCAACATGAATGGATTAAATGCTAGTATACATAAAAATACATATATATATATATATAT
* *
14596 TAATTTATTAAAATTATTTACTTGAATAATACATTTAAATTATTTTGCCTTCCAAATTTGTATGT
196 TAATTTATTAAAATTATTTACTTGAATCATACATTTAAATTATTTTGCCTTCCAAATTTGTATTT
*
14661 GAAACACAGGT-AAAAGTATTAACATATAATATTGAAAACTTGTCA-ATTTTTTTT-CTTTCATT
261 GAAACACAGTTAAAAAGTATTAACATATAATATTGAAAACTTGTCATATTTTTTTTGCTTTCATT
* * * * *
14723 TATAATTTTACATATTTTTATTTTATTTTATATAGCTAAGCTAATTAAGACAATTATCTGTATGT
326 TATAATTTTACATATTTTTATTTTATTTCATACAGCTAAGCTGATTAAGACAATTATCAGTATAT
* *
14788 GTACTATGATTATGACTTCATTATCAGCTTATCTGTATCTGTAGAGAGATTTA--TATT-TTTTA
391 GTACTATGATTATGACTTCATTATCAGCTCATCTGTATCTGTAGGGAGATTTATTTATTATTTTA
* * * *
14850 TTTTATTTTATTTAAAAAATCTTTGTTGATAAAATTGTTTAAAACGATTCATTTTCTATCTTTTT
456 TTTTATTTTATTTAAAAAATCTTTATTGATAAAGTTGGTCAAAACGATTCATTTTCTA---TTTT
*
14915 TTAAAAATTTGAGAGAAAAAAATTTTATTGATGCTTTTTACTATGAAAAAAATGAAGTTAATTTT
518 TTAAAAATTTGAGAGAAAAAAA-TTTATTGATGCTTTTTACTATGAAAAAAATGAAGTTAGTTTT
* * * * *
14980 TCATCCGCTCTTTTGCAATTATATTAATTCTGTGTTTTCATCT-GAGAGAGATTGACACACCTTC
582 TCATCCGCTCTTTTGCATTTGTATTAATTTTGCGTTTTCATCTAGAGAGAGATTGACACACCTTT
* * *
15044 TTTGATTTGTAGTGTTTATTGTTAGTAAATGCTATTGATTAATAACATAATTGAAAAGGCTTGAG
647 TTTGATTTGTAGTGTTTATTGTTAGTAAGTGCTATCGATTAATAACATAATTGAGAAGGCTTGAG
* * *
15109 ATATGAGTTACGGATATTAG-CAAGCACTCGAGAGGCAGACAAATTTCATTTTAAGGTCAAAAGT
712 ATATGAGTTACGGATACT-GTCAAGCACTCGAGAGGTAGATAAATTTCATTTTAAGGTC-AAAGT
* * *
15173 TTCAAACCTTGACTAGATCAATTTTTTAAATATGAGAAAGTCAAAATTTCTATAATTTTTGTCAG
775 TTCAAACCTTGACTAGATCAATTTTTTAGATTTGGGAAAGTCAAAATTTCTATAATTTTTGTCAG
* * * *
15238 CATGATTATTTTATTTTATTTATTTCGAATATATACGTGTAACTGTTTATTCATATACGCAGTAT
840 TACGATTATTTTA-TTT-TTTATTTCGGATATGTACGTGTAACTGTTTATTCATATACGCAGTAT
*
15303 TTATCAACATCAATAATTTTTAAATAATTTTTTATATAATTAATCCATACATTTACTTATAAGTT
903 TTATCAACACCAATAATTTTTAAATAATTTTTTATATAATTAATCCATACATTTACTTATAAGTT
15368 AATTTAAG
968 AATTTAAG
*
15376 --AACTACAC-AATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAGAATTTGAAAAT-AA
1 AAAAATAC-CTAATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAGAATTTGAAAATAAA
* * *
15437 AAATAATTATAATGTAATAATATTTAATTAAAAATTAATTATTACAATTAATTAATTTAAAAGTT
65 AAATAATTATAATGTAATAAAATTTAATTTAAAATTAATTATTACAATTAATTAATTAAAAAGTT
15502 ATAGAGCCCCAACATGAATGGATTAAATGCTAGTATACATAAAAATACATATATATATATATATA
130 ATAGAGCCCCAACATGAATGGATTAAATGCTAGTATACATAAAAATAC----ATATATATATATA
* ** *
15567 TATATTAATTTATTAAAATTATTTACTAGAATCACGCATTTAAATTATTTTTCCTTCCAAATTTG
191 TATATTAATTTATTAAAATTATTTACTTGAATCATACATTTAAATTATTTTGCCTTCCAAATTTG
*
15632 TATTTGAAACACAGTTAAAAAGTATTGACATATAATATTGAAAACTTGTCA-ATTTTTTTTGCTT
256 TATTTGAAACACAGTTAAAAAGTATTAACATATAATATTGAAAACTTGTCATATTTTTTTTGCTT
15696 TCATTTATAATTTTACATATTTTTATTTTATTTCA-ACAGCTAAGCTGATTAAGACAATTATCAG
321 TCATTTATAATTTTACATATTTTTATTTTATTTCATACAGCTAAGCTGATTAAGACAATTATCAG
* * *
15760 TATATGTATTATGATTATGACTTCATTATCAGCTCATTTGTATTTGTAGGGAGATTATATTTAAT
386 TATATGTACTATGATTATGACTTCATTATCAGCTCATCTGTATCTGTAGGGAGATT-TATTT-AT
*
15825 TATTTTATTTTATTTTATTTAAAAAAATCTTTATTGATAAAGTTGGTCAAAACGATTCATTTCCT
449 TATTTTATTTTATTTTATTT-AAAAAATCTTTATTGATAAAGTTGGTCAAAACGATTCATTTTCT
*
15890 ATTTTTTAAAAAAATTGAGAG-AAAAAATTTATTGATGCTTTTTACTATGAAAAAAATGAAGTTA
513 ATTTTTT-AAAAATTTGAGAGAAAAAAATTTATTGATGCTTTTTACTATGAAAAAAATGAAGTTA
* *
15954 GTTTTTCATCCGCTCTTTTGCATTTGTATTAGTTTTGCGTTTTCATATGAGAGAGAGATATTGAC
577 GTTTTTCATCCGCTCTTTTGCATTTGTATTAATTTTGCGTTTTCATCT-AGAGAGAG--ATTGAC
*
16019 ACACCTTTTTTGATTTGTAGTGTTTGTTGTTAGTAAGTGCTATCGATTAATAACATAATTGAGAA
639 ACACCTTTTTTGATTTGTAGTGTTTATTGTTAGTAAGTGCTATCGATTAATAACATAATTGAGAA
* * * * * * *
16084 TGCTTAAGATATGAATTATGGATACTGTCAAGTAC-CTGAAAGGTA-AGTAAATTTCATCTTAAG
704 GGCTTGAGATATGAGTTACGGATACTGTCAAGCACTC-GAGAGGTAGA-TAAATTTCATTTTAAG
* * *
16147 GTCAAATTTTCAAAACCTTAACTCGATCAATTTTTTAGATTTGGGAAAGTCAAAATTTCTATAAT
767 GTCAAAGTTTC-AAACCTTGACTAGATCAATTTTTTAGATTTGGGAAAGTCAAAATTTCTATAAT
* * *
16212 TTTTGTCAGTACAATTATTTTATTTTTTATTTCGGATATGTACGTGTAACTGTTTATTTATATAT
831 TTTTGTCAGTACGATTATTTTATTTTTTATTTCGGATATGTACGTGTAACTGTTTATTCATATAC
* *
16277 GCAGTATTTATCAACACCAATAGTTTTTAAATAATTTTTTATATAATTAATCCATACAGTTACTT
896 GCAGTATTTATCAACACCAATAATTTTTAAATAATTTTTTATATAATTAATCCATACATTTACTT
16342 ATAAGTTAATTTAAG
961 ATAAGTTAATTTAAG
16357 AAAAATACCTAATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAGAATTTGAAAATAAAA
1 AAAAATACCTAATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAGAATTTGAAAATAAAA
16422 AATAATTATAATGTAATAAAATTTAATTTAAAATTAATTATTACAATTAATTAATTAAAAAGTTA
66 AATAATTATAATGTAATAAAATTTAATTTAAAATTAATTATTACAATTAATTAATTAAAAAGTTA
*
16487 TAGAGCCCCAACATGAATGGATTATATGCTAGTATACATAAAAATACATATA-A-ATATATATAT
131 TAGAGCCCCAACATGAATGGATTAAATGCTAGTATACATAAAAATACATATATATATATATATAT
* *
16550 TAATTTATTAAAATTATTTACTTGAATCATATATTTAAATTATTTTACCTTCCAAATTTGTATTT
196 TAATTTATTAAAATTATTTACTTGAATCATACATTTAAATTATTTTGCCTTCCAAATTTGTATTT
* * * *
16615 GAAATACAGTTAAAAGGTATTAACATATAATATTAAAAACTTGTCATTTTTTTTTTTGCTTTCAT
261 GAAACACAGTTAAAAAGTATTAACATATAATATTGAAAACTTGTCA-TATTTTTTTTGCTTTCAT
* **
16680 TTATAATTTTACATATTTTTATTTTATTTTATATGGCTAAGCTGATTAAGACAATTATC--TATA
325 TTATAATTTTACATATTTTTATTTTATTTCATACAGCTAAGCTGATTAAGACAATTATCAGTATA
* *
16743 TGCGTACTATGATTATGACTTTATTATCAGCTCATCTGTATCTGTAAGGAG----ATTTA-TA-T
390 T--GTACTATGATTATGACTTCATTATCAGCTCATCTGTATCTGTAGGGAGATTTATTTATTATT
16802 TTA-TTTATTTTATTTAAAAAATCTTTATTGATAAAGTTGGTCAAAACGATTCATTTTCTATTTT
453 TTATTTTATTTTATTTAAAAAATCTTTATTGATAAAGTTGGTCAAAACGATTCATTTTCTATTTT
*
16866 CTTAAAAATTTGAGAGAAAAAAAATTTATTGATGCCTTTTACTAT-AAAAAAATGAAGTTAGTTT
518 -TTAAAAATTTGAGAG-AAAAAAATTTATTGATGCTTTTTACTATGAAAAAAATGAAGTTAGTTT
*
16930 TTCATCCGCTCTTCTAG-ATTTGTATTAATTGTATGC--TTTCATCTAG-GAGAGATTGACACAC
581 TTCATCCGCTCTT-TTGCATTTGTATTAATT-T-TGCGTTTTCATCTAGAGAGAGATTGACACAC
* * * * * **
16991 CTTTTTTGGTTTGTCGTATTTATTGTTAGTAAGT-CTTTTCGATTGATAACACGATTGAGAAGGC
643 CTTTTTTGATTTGTAGTGTTTATTGTTAGTAAGTGC-TATCGATTAATAACATAATTGAGAAGGC
* * * *
17055 TTGAGATATGAGTTACGGATACTATTAAGCACTCGAGAGGTAGTTAAATTTCGTTTTAAGGTCAA
707 TTGAGATATGAGTTACGGATACTGTCAAGCACTCGAGAGGTAGATAAATTTCATTTTAAGGTCAA
* * * * *
17120 AGGTTTCAAACCTTGACTTA-ATCAATTCTTTCGATTTGGTAAAATCAAAATTTTTATAATTTTT
772 A-GTTTCAAACCTTGAC-TAGATCAATTTTTTAGATTTGGGAAAGTCAAAATTTCTATAATTTTT
* * * * * * *
17184 GTTAGCT-CGAGTATTTTATTTTATTATTTTGGATATGTACATGTAACTCTTTGTTCATATACAC
835 GTCAG-TACGATTATTTTATTTT-TTATTTCGGATATGTACGTGTAACTGTTTATTCATATACGC
* **
17248 AGTATTTATCAACACCAACAATTTTTAAATAAATTTTTTATATAATTAATTTATACATTTACTT-
898 AGTATTTATCAACACCAATAATTTTTAAAT-AATTTTTTATATAATTAATCCATACATTTACTTA
*
17312 TCTAGTTAATTTAAG
962 T-AAGTTAATTTAAG
* * * * *
17327 AACAATACGTAATCCTATACAATTAACATAAATCTAATTTTTATAATTCGAATTTGAAAATAAAA
1 AAAAATACCTAATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAGAATTTGAAAAT-AAA
*
17392 AAATAATTATAATGTAATAAAATTTAATTTAAAACTAATTATTACAATTAATTAATTAAAAAGTT
65 AAATAATTATAATGTAATAAAATTTAATTTAAAATTAATTATTACAATTAATTAATTAAAAAGTT
* * * * *
17457 AAAGAGCCCCAACATAAATGGATTAAATGCTAATTTATATAAAAATACAAATAACTATATATATA
130 ATAGAGCCCCAACATGAATGGATTAAATGCTAGTATACATAAAAATAC--AT-A-TATATATATA
*
17522 TATATTAATTTATTAAAATTATTTACTTGAATCATATATTTAAATTATTTTGCCTTCCAAATTTG
191 TATATTAATTTATTAAAATTATTTACTTGAATCATACATTTAAATTATTTTGCCTTCCAAATTTG
* * * * *
17587 TATTTGAAACACAGTAAAAAAGTATTGATATATAATTTTGAAAACTTGTCATTTTTTTTTTGCTT
256 TATTTGAAACACAGTTAAAAAGTATTAACATATAATATTGAAAACTTGTCATATTTTTTTTGCTT
17652 TCATTTATAA--TTACATATTTTTATTTTATTTCATACAGCTAAGCTGATTAAGACAATTATCAG
321 TCATTTATAATTTTACATATTTTTATTTTATTTCATACAGCTAAGCTGATTAAGACAATTATCAG
17715 TA
386 TA
17717 CTGTAGAGAA
Statistics
Matches: 2121, Mismatches: 165, Indels: 108
0.89 0.07 0.05
Matches are distributed among these distances:
967 1 0.00
968 181 0.09
969 70 0.03
970 103 0.05
971 171 0.08
972 229 0.11
973 36 0.02
974 54 0.03
975 3 0.00
976 118 0.06
977 231 0.11
978 151 0.07
979 84 0.04
980 64 0.03
981 203 0.10
982 32 0.02
983 279 0.13
984 111 0.05
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (975 bp):
AAAAATACCTAATCCTAAAGAATTAACATAAATCTAATTTTTATAATTAGAATTTGAAAATAAAA
AATAATTATAATGTAATAAAATTTAATTTAAAATTAATTATTACAATTAATTAATTAAAAAGTTA
TAGAGCCCCAACATGAATGGATTAAATGCTAGTATACATAAAAATACATATATATATATATATAT
TAATTTATTAAAATTATTTACTTGAATCATACATTTAAATTATTTTGCCTTCCAAATTTGTATTT
GAAACACAGTTAAAAAGTATTAACATATAATATTGAAAACTTGTCATATTTTTTTTGCTTTCATT
TATAATTTTACATATTTTTATTTTATTTCATACAGCTAAGCTGATTAAGACAATTATCAGTATAT
GTACTATGATTATGACTTCATTATCAGCTCATCTGTATCTGTAGGGAGATTTATTTATTATTTTA
TTTTATTTTATTTAAAAAATCTTTATTGATAAAGTTGGTCAAAACGATTCATTTTCTATTTTTTA
AAAATTTGAGAGAAAAAAATTTATTGATGCTTTTTACTATGAAAAAAATGAAGTTAGTTTTTCAT
CCGCTCTTTTGCATTTGTATTAATTTTGCGTTTTCATCTAGAGAGAGATTGACACACCTTTTTTG
ATTTGTAGTGTTTATTGTTAGTAAGTGCTATCGATTAATAACATAATTGAGAAGGCTTGAGATAT
GAGTTACGGATACTGTCAAGCACTCGAGAGGTAGATAAATTTCATTTTAAGGTCAAAGTTTCAAA
CCTTGACTAGATCAATTTTTTAGATTTGGGAAAGTCAAAATTTCTATAATTTTTGTCAGTACGAT
TATTTTATTTTTTATTTCGGATATGTACGTGTAACTGTTTATTCATATACGCAGTATTTATCAAC
ACCAATAATTTTTAAATAATTTTTTATATAATTAATCCATACATTTACTTATAAGTTAATTTAAG
Found at i:17862 original size:17 final size:16
Alignment explanation
Indices: 17826--17870 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
17816 AATATGTCAT
*
17826 AATTATTTAATTAAAA
1 AATTATTTTATTAAAA
**
17842 AATTTATTTTATTAATT
1 AA-TTATTTTATTAAAA
17859 AATTATTTTATT
1 AATTATTTTATT
17871 TAAATGATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTATTTTATTAAAA
Found at i:18155 original size:40 final size:36
Alignment explanation
Indices: 18101--18212 Score: 102
Period size: 40 Copynumber: 3.0 Consensus size: 36
18091 TTTTTCTTTC
*
18101 TTTTATTTTATAAATAATATATTTAAAGCGTTTTGAA-A
1 TTTT-TTTT-TAAATAATATATTTAAAGCGCTTT-AAGA
* * *
18139 CTTATTTTTTCTTAAATATTTTATTTAAAGTGCTTTAAGA
1 --T-TTTTTT-TTAAATAATATATTTAAAGCGCTTTAAGA
*
18179 TTTTTTTTTAAATAATATA-TTAAAGTGCTTTAAG
1 TTTTTTTTTAAATAATATATTTAAAGCGCTTTAAG
18213 TTTCTTATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
35 15 0.24
36 10 0.16
37 6 0.10
38 1 0.02
39 2 0.03
40 25 0.40
41 4 0.06
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.53
Consensus pattern (36 bp):
TTTTTTTTTAAATAATATATTTAAAGCGCTTTAAGA
Found at i:18190 original size:36 final size:35
Alignment explanation
Indices: 18142--18212 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
18132 TTTGAAACTT
* *
18142 ATTTTTTCTTAAATATTTTATTTAAAGTGCTTTAAG
1 ATTTTTTCTTAAATAATATA-TTAAAGTGCTTTAAG
*
18178 ATTTTTTTTTAAATAATATATTAAAGTGCTTTAAG
1 ATTTTTTCTTAAATAATATATTAAAGTGCTTTAAG
18213 TTTCTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 15 0.47
36 17 0.53
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.54
Consensus pattern (35 bp):
ATTTTTTCTTAAATAATATATTAAAGTGCTTTAAG
Found at i:18224 original size:39 final size:37
Alignment explanation
Indices: 18106--18233 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 37
18096 CTTTCTTTTA
* * * *
18106 TTTTATAAATAATATATTTAAAGCGTTTTGAAACTTATT
1 TTTTTTAAATAATATATTTAAAGTGCTTT-AAGCTTA-T
* * *
18145 TTTTCTTAAATATTTTATTTAAAGTGCTTTAAGATT-T
1 TTTT-TTAAATAATATATTTAAAGTGCTTTAAGCTTAT
18182 TTTTTTAAATAATATA-TTAAAGTGCTTTAAGTTTCTTAT
1 TTTTTTAAATAATATATTTAAAGTGCTTTAAG---CTTAT
*
18221 TTTTTAAAATAAT
1 TTTTTTAAATAAT
18234 TTTAATATTA
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
35 15 0.21
36 10 0.14
37 5 0.07
38 2 0.03
39 21 0.29
40 20 0.27
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (37 bp):
TTTTTTAAATAATATATTTAAAGTGCTTTAAGCTTAT
Found at i:18377 original size:10 final size:10
Alignment explanation
Indices: 18362--18391 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
18352 ATATTTTTGA
18362 AAAAATAATT
1 AAAAATAATT
*
18372 AAAAATAAAT
1 AAAAATAATT
18382 AAAAATAATT
1 AAAAATAATT
18392 TTTTAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAATAATT
Found at i:19307 original size:21 final size:21
Alignment explanation
Indices: 19264--19309 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
19254 TGCATTAATT
*
19264 ATTTATTTTTATTATATTTTA
1 ATTTATTTTTATTATATTATA
*
19285 ATTTATTTTATATTTTA-TATA
1 ATTTATTTT-TATTATATTATA
19306 ATTT
1 ATTT
19310 TTTATAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTATTTTTATTATATTATA
Found at i:19431 original size:16 final size:15
Alignment explanation
Indices: 19412--19441 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
19402 AAGAAAAATT
19412 TATTTTATTATTTAAA
1 TATTTTATT-TTTAAA
19428 TATTTTATTTTTAA
1 TATTTTATTTTTAA
19442 TAATATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTTTATTTTTAAA
Found at i:26255 original size:23 final size:21
Alignment explanation
Indices: 26229--26279 Score: 57
Period size: 24 Copynumber: 2.3 Consensus size: 21
26219 AATATTTTTT
*
26229 ATTTTTTAAAACAAATAAAGATCA
1 ATTTTTTAAAA-AAA-AAACAT-A
*
26253 TTTTTTTAAAAAAAAAACATA
1 ATTTTTTAAAAAAAAAACATA
26274 ATTTTT
1 ATTTTT
26280 GAAACTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.25
22 5 0.21
23 3 0.12
24 10 0.42
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (21 bp):
ATTTTTTAAAAAAAAAACATA
Found at i:26277 original size:22 final size:24
Alignment explanation
Indices: 26230--26279 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 24
26220 ATATTTTTTA
* *
26230 TTTTTTAAAACAAATAAAGATCAT
1 TTTTTTAAAACAAATAAACATAAT
26254 TTTTTTAAAA-AAA-AAACATAAT
1 TTTTTTAAAACAAATAAACATAAT
26276 TTTT
1 TTTT
26280 GAAACTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 11 0.46
23 3 0.12
24 10 0.42
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (24 bp):
TTTTTTAAAACAAATAAACATAAT
Found at i:26425 original size:2 final size:2
Alignment explanation
Indices: 26418--26456 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
26408 GATTTTCAAA
* *
26418 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26457 AATAAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:26771 original size:58 final size:58
Alignment explanation
Indices: 26681--26797 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
26671 CAAGCCATTT
26681 CAATTTTTCAATTACCCAGAAAATTAACAAGTTAAATAACTATTTTGGTAATTTTTAA
1 CAATTTTTCAATTACCCAGAAAATTAACAAGTTAAATAACTATTTTGGTAATTTTTAA
* *
26739 CAATTTTTCAATTACCTAGAAAATTAACAAGTTAAATAACTGTTTTGGTAATTTTTAA
1 CAATTTTTCAATTACCCAGAAAATTAACAAGTTAAATAACTATTTTGGTAATTTTTAA
26797 C
1 C
26798 TAAAAAATGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (58 bp):
CAATTTTTCAATTACCCAGAAAATTAACAAGTTAAATAACTATTTTGGTAATTTTTAA
Found at i:28929 original size:13 final size:13
Alignment explanation
Indices: 28911--28936 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28901 CAATTTTTTG
28911 TGTATCGATACAT
1 TGTATCGATACAT
28924 TGTATCGATACAT
1 TGTATCGATACAT
28937 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:29001 original size:21 final size:21
Alignment explanation
Indices: 28975--29050 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
28965 CTGCCAAGAA
*
28975 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
28996 ATGTATCGATACAT-TACAAC
1 ATGTATCGATACATCTTTTTC
29016 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
29037 ATGTATCGATACAT
1 ATGTATCGATACAT
29051 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:29021 original size:20 final size:20
Alignment explanation
Indices: 28996--29068 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
28986 CATCTTTTTT
28996 ATGTATCGATACATTACAAC
1 ATGTATCGATACATTACAAC
****
29016 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TACAAC
*
29037 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTACAAC
29057 ATGTATCGATAC
1 ATGTATCGATAC
29069 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTACAAC
Found at i:29032 original size:41 final size:41
Alignment explanation
Indices: 28975--29068 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
28965 CTGCCAAGAA
*
28975 ATGTATCGATACATCTTTTTTATGTATCGATACATTACAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTACAAC
*
29016 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTACAAC
29057 ATGTATCGATAC
1 ATGTATCGATAC
29069 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTACAAC
Found at i:29704 original size:16 final size:16
Alignment explanation
Indices: 29673--29718 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
29663 CTCTCCTTTG
29673 TCTCCCCCGTTTAAAAAA
1 TCTCCCCC--TTAAAAAA
29691 TCTCCCCCTTAAAAAA
1 TCTCCCCCTTAAAAAA
29707 TCTCCCCCTTAA
1 TCTCCCCCTTAA
29719 TCAAGTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 20 0.71
18 8 0.29
ACGTcount: A:0.30, C:0.39, G:0.02, T:0.28
Consensus pattern (16 bp):
TCTCCCCCTTAAAAAA
Found at i:31542 original size:13 final size:13
Alignment explanation
Indices: 31524--31562 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
31514 ATAATCACCC
*
31524 TGTATCGATACAG
1 TGTATCGATACAA
31537 TGTATCGATACAA
1 TGTATCGATACAA
31550 TGTATCGATACAA
1 TGTATCGATACAA
31563 CAAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:31573 original size:20 final size:20
Alignment explanation
Indices: 31548--31626 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
31538 GTATCGATAC
31548 AATGTATCGATACAACAAAA
1 AATGTATCGATACAACAAAA
* *
31568 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACA-ACAA----AA
*
31593 GATGTATCGATAC-ACAAAA
1 AATGTATCGATACAACAAAA
31612 ACATGTATCGATACA
1 A-ATGTATCGATACA
31627 TTTTGGACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.02
20 26 0.57
21 3 0.07
23 3 0.07
25 13 0.28
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAACAAAA
Found at i:33669 original size:15 final size:15
Alignment explanation
Indices: 33633--33670 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
33623 TACATCAATT
* *
33633 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
33648 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
33663 TCATTTTG
1 TCATTTTG
33671 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:37751 original size:13 final size:13
Alignment explanation
Indices: 37733--37758 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37723 CAATTTTTTG
37733 TGTATCGATACAT
1 TGTATCGATACAT
37746 TGTATCGATACAT
1 TGTATCGATACAT
37759 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:37823 original size:21 final size:21
Alignment explanation
Indices: 37797--37872 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
37787 CTGCCAAGAA
*
37797 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
37818 ATGTATCGATACAT-TACAAC
1 ATGTATCGATACATCTTTTTC
37838 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
37859 ATGTATCGATACAT
1 ATGTATCGATACAT
37873 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:37843 original size:20 final size:20
Alignment explanation
Indices: 37818--37890 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
37808 CATCTTTTTT
37818 ATGTATCGATACATTACAAC
1 ATGTATCGATACATTACAAC
****
37838 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TACAAC
*
37859 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTACAAC
37879 ATGTATCGATAC
1 ATGTATCGATAC
37891 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTACAAC
Found at i:37854 original size:41 final size:41
Alignment explanation
Indices: 37797--37890 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
37787 CTGCCAAGAA
*
37797 ATGTATCGATACATCTTTTTTATGTATCGATACATTACAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTACAAC
*
37838 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTACAAC
37879 ATGTATCGATAC
1 ATGTATCGATAC
37891 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTACAAC
Found at i:38271 original size:32 final size:32
Alignment explanation
Indices: 38200--38576 Score: 596
Period size: 32 Copynumber: 11.8 Consensus size: 32
38190 AAAATGGTGA
* * ** *
38200 TTTGAAAAGGGTTGCCACTGACTTGCAT-AGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
38231 TTTTAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
38263 TTTGAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
38295 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
38327 TTTTAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
38359 TTTGAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
38391 TTAGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
38423 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
38455 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
38487 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
38519 TATGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
38551 TTTGAAATGGG-TGCCACAGAGTTGTG
1 TTTGAAATGGGTTGCCACCGACTTGTG
38577 GATTTAAAAG
Statistics
Matches: 320, Mismatches: 25, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
31 36 0.11
32 284 0.89
ACGTcount: A:0.17, C:0.18, G:0.33, T:0.31
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:38593 original size:27 final size:27
Alignment explanation
Indices: 38559--39705 Score: 1844
Period size: 27 Copynumber: 42.0 Consensus size: 27
38549 GCTTTGAAAT
* *
38559 GGGTGCCACAGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
38586 GGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
38613 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
38640 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
38667 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
38695 GGGTGCCATGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
38722 GGGTGCTACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
38749 GGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
38776 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
38803 GGGATGCCACAGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
38831 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
38858 GAGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
38885 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
38912 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
38939 GGGTACCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
38966 GGGTGCCACAGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
38994 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
39021 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
39049 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
39076 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39103 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
39130 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39157 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
39185 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
39212 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
39240 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
39267 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39294 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
39322 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39349 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
39377 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
39404 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
39432 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
39459 GGGTGCCATGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39486 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
* *
39514 GGGTGCCACAGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39541 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39568 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
39595 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
39622 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
39650 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* **
39677 GGATGCCACAAAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
39705 G
1 G
39706 AAAATGCCAC
Statistics
Matches: 1043, Mismatches: 65, Indels: 23
0.92 0.06 0.02
Matches are distributed among these distances:
27 761 0.73
28 282 0.27
ACGTcount: A:0.28, C:0.14, G:0.35, T:0.23
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:38694 original size:82 final size:81
Alignment explanation
Indices: 38559--39705 Score: 1844
Period size: 82 Copynumber: 14.0 Consensus size: 81
38549 GCTTTGAAAT
* * *
38559 GGGTGCCACAGAGTTGTGGATTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
38624 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* * *
38640 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCATG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
38705 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
38722 GGGTGCTACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
38787 AGTTGTGGTCTTAAAA
66 AGTTGTGGACTTAAAA
* *
38803 GGGATGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
38868 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
38885 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTACCACAG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
38950 AGTTGTGGACTAAAAA
66 AGTTGTGGACTTAAAA
* * *
38966 GGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCAC
*
39031 GGAGTTATGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
*
39049 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
39114 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* * *
39130 GGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
39195 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
39212 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
39277 GAGTTGTGGTCTTAAAA
65 GAGTTGTGGACTTAAAA
39294 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
39359 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * *
39377 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
39442 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * *
39459 GGGTGCCATGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
39524 GAGTTGTGGATTTAAAA
65 GAGTTGTGGACTTAAAA
*
39541 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
39606 AGTTGTGGACTAAAAA
66 AGTTGTGGACTTAAAA
* * *
39622 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATGCCACA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
39687 AAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
39705 G
1 G
39706 AAAATGCCAC
Statistics
Matches: 991, Mismatches: 63, Indels: 22
0.92 0.06 0.02
Matches are distributed among these distances:
81 313 0.32
82 534 0.54
83 144 0.15
ACGTcount: A:0.28, C:0.14, G:0.35, T:0.23
Consensus pattern (81 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAA
Found at i:46968 original size:22 final size:23
Alignment explanation
Indices: 46920--46969 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
46910 AATATTTTTT
* *
46920 ATTTTTTAAAACAAATAAAGATC
1 ATTTTTTAAAACAAATAAACATA
46943 ATTTTTTAAAA-AAA-AAACATA
1 ATTTTTTAAAACAAATAAACATA
*
46964 AATTTT
1 ATTTTT
46970 GAAACTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 3 0.12
23 11 0.46
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (23 bp):
ATTTTTTAAAACAAATAAACATA
Found at i:47127 original size:14 final size:14
Alignment explanation
Indices: 47108--47140 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
47098 GATTTTCAAA
47108 ATATATATATATAC
1 ATATATATATATAC
47122 ATATATATATATAC
1 ATATATATATATAC
47136 ATATA
1 ATATA
47141 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATATATATATAC
Found at i:51111 original size:14 final size:13
Alignment explanation
Indices: 51092--51145 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 13
51082 GAGTTCCCTT
*
51092 AAAAAAATAATGAA
1 AAAAAAATAA-CAA
51106 AAAAAAATAAC-A
1 AAAAAAATAACAA
51118 AAAAAAA-AAC-A
1 AAAAAAATAACAA
* *
51129 AAAACAACAACAA
1 AAAAAAATAACAA
51142 AAAA
1 AAAA
51146 CACACAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
11 10 0.28
12 11 0.31
13 5 0.14
14 10 0.28
ACGTcount: A:0.83, C:0.09, G:0.02, T:0.06
Consensus pattern (13 bp):
AAAAAAATAACAA
Found at i:51120 original size:11 final size:11
Alignment explanation
Indices: 51106--51158 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
51096 AAATAATGAA
51106 AAAAAAATAAC
1 AAAAAAATAAC
*
51117 AAAAAAAAAAC
1 AAAAAAATAAC
*
51128 AAAAACAACAAC
1 AAAAA-AATAAC
*
51140 AAAAAACA-CAC
1 AAAAAA-ATAAC
51151 AAAAAAAT
1 AAAAAAAT
51159 GCAAAGGCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 1 0.03
11 24 0.67
12 11 0.31
ACGTcount: A:0.81, C:0.15, G:0.00, T:0.04
Consensus pattern (11 bp):
AAAAAAATAAC
Found at i:51120 original size:12 final size:11
Alignment explanation
Indices: 51105--51157 Score: 61
Period size: 12 Copynumber: 4.6 Consensus size: 11
51095 AAAATAATGA
51105 AAAAAAAATAAC
1 AAAAAAAA-AAC
51117 AAAAAAAAAAC
1 AAAAAAAAAAC
*
51128 AAAAACAACAAC
1 AAAAA-AAAAAC
* *
51140 AAAAAACACAC
1 AAAAAAAAAAC
51151 AAAAAAA
1 AAAAAAA
51158 TGCAAAGGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
11 17 0.49
12 18 0.51
ACGTcount: A:0.83, C:0.15, G:0.00, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:51131 original size:23 final size:23
Alignment explanation
Indices: 51105--51157 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
51095 AAAATAATGA
*
51105 AAAAAAAATAACAAAAAAAAAAC
1 AAAAAAAACAACAAAAAAAAAAC
* * *
51128 AAAAACAACAACAAAAAACACAC
1 AAAAAAAACAACAAAAAAAAAAC
51151 AAAAAAA
1 AAAAAAA
51158 TGCAAAGGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.83, C:0.15, G:0.00, T:0.02
Consensus pattern (23 bp):
AAAAAAAACAACAAAAAAAAAAC
Found at i:52409 original size:31 final size:31
Alignment explanation
Indices: 52367--52719 Score: 210
Period size: 31 Copynumber: 11.2 Consensus size: 31
52357 CAATTCTTCA
*
52367 CATCTCTTTTCTCCAAAGTCCACGACTCAGTGG
1 CATCT-TTTTCT-CAAAGTCCACAACTCAGTGG
52400 CAT-TTTTTCTCCAAAGTCCACAACTCAGTGG
1 CATCTTTTTCT-CAAAGTCCACAACTCAGTGG
* *
52431 CAATCTCTTT-TCAAAGTCCACGACTCAGTGG
1 C-ATCTTTTTCTCAAAGTCCACAACTCAGTGG
* *
52462 CATC-TTTTCTTTAAAGTCCACAACTCCGTGG
1 CATCTTTTTC-TCAAAGTCCACAACTCAGTGG
*
52493 CATCTCTTTCCTTCAAAGTCCACAACTCAGTGG
1 CATCT-TTTTC-TCAAAGTCCACAACTCAGTGG
** *
52526 CATCCCTTTTTCATGTAAGTCCACAATTCAGTGG
1 CAT--CTTTTTC-TCAAAGTCCACAACTCAGTGG
* * *
52560 CAT-TTCTTT-TCTAAGTCCACGACTCCGTGG
1 CATCTT-TTTCTCAAAGTCCACAACTCAGTGG
* * * * * *
52590 TACCTTTTTCTTTTTAAAGCCCACAACTCCGTGA
1 CATCTTTTTC---TCAAAGTCCACAACTCAGTGG
** *
52624 CACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGG
1 CA-TCTTTTT--C-TCAAAGTCCACAACTCAGTGG
** * *
52659 CA-CCCTTT-T--AAGTCTACAACTCCGTGG
1 CATCTTTTTCTCAAAGTCCACAACTCAGTGG
* *
52686 CATC-CTTT-T--AAGTCCACAACTCCGTGG
1 CATCTTTTTCTCAAAGTCCACAACTCAGTGG
52713 CATCTTT
1 CATCTTT
52720 CTCCTTTTCA
Statistics
Matches: 265, Mismatches: 36, Indels: 43
0.77 0.10 0.12
Matches are distributed among these distances:
27 45 0.17
28 2 0.01
29 4 0.02
30 24 0.09
31 73 0.28
32 7 0.03
33 38 0.14
34 42 0.16
35 29 0.11
37 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (31 bp):
CATCTTTTTCTCAAAGTCCACAACTCAGTGG
Found at i:52576 original size:64 final size:61
Alignment explanation
Indices: 52380--52589 Score: 251
Period size: 62 Copynumber: 3.3 Consensus size: 61
52370 CTCTTTTCTC
* **
52380 CAAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAGTCCACAACTCAGTGGCAATCTCTTTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTGTAAAGTCCACAACTCAGTGGC-ATCTCTTTT
* *
52442 CAAAGTCCACGACTCAGTGGCATCTTTTCTTTAAAGTCCACAACTCCGTGGCATCTCTTTCCTT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTGTAAAGTCCACAACTCAGTGGCATCTC-TT--TT
* * *
52506 CAAAGTCCACAACTCAGTGGCATCCCTTTTTCATGT-AAGTCCACAATTCAGTGGCATTTCTTTT
1 CAAAGTCCACGACTCAGTGGCAT--C-TTTTC-TGTAAAGTCCACAACTCAGTGGCATCTCTTTT
* *
52570 CTAAGTCCACGACTCCGTGG
1 CAAAGTCCACGACTCAGTGG
52590 TACCTTTTTC
Statistics
Matches: 129, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
61 5 0.04
62 50 0.39
64 43 0.33
66 3 0.02
67 26 0.20
68 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (61 bp):
CAAAGTCCACGACTCAGTGGCATCTTTTCTGTAAAGTCCACAACTCAGTGGCATCTCTTTT
Found at i:52600 original size:34 final size:33
Alignment explanation
Indices: 52444--52694 Score: 168
Period size: 34 Copynumber: 7.8 Consensus size: 33
52434 TCTCTTTTCA
* * * *
52444 AAGTCCACGACTCAGTGGCATC-TTTTC-TTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * **
52475 AAGTCCACAACTCCGTGGCATCTCTTTCCTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
52508 AAGTCCACAACTCAGTGGCATCCCTTTTTC-ATGT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCTTTTT
* *
52542 AAGTCCACAATTCAGTGGCA----TTTCTTTTCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT-T
* *
52572 AAGTCCACGACTCCGTGGTACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
52605 AAAGCCCACAACTCCGTGACACTCTTTTTCCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
52641 AAGTCCACAACTCCGTGGCACC-----C-TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
*
52668 AAGTCTACAACTCCGTGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTT
52695 AAGTCCACAA
Statistics
Matches: 177, Mismatches: 25, Indels: 35
0.75 0.11 0.15
Matches are distributed among these distances:
27 23 0.13
28 7 0.04
29 1 0.01
30 17 0.10
31 20 0.11
32 4 0.02
33 23 0.13
34 46 0.26
35 31 0.18
36 5 0.03
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.34
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:52634 original size:64 final size:63
Alignment explanation
Indices: 52380--52634 Score: 234
Period size: 64 Copynumber: 4.0 Consensus size: 63
52370 CTCTTTTCTC
* * ** *
52380 CAAAGTCCACGACTCAGTGGCA-TTTTTTCTCCAAAGTCCACAACTCAGTGGCAATCTCTTTT
1 CAAAGTCCACGACTCAGTGGTACCTTTTTCTTTAAAGTCCACAACTCAGTGGCACTCTCTTTT
* * *
52442 CAAAGTCCACGACTCAGTGGCATC-TTTTCTTTAAAGTCCACAACTCCGTGGCA-TCTCTTTCCT
1 CAAAGTCCACGACTCAGTGGTACCTTTTTCTTTAAAGTCCACAACTCAGTGGCACTCTC-TT--T
52505 T
63 T
* * * * *
52506 CAAAGTCCACAACTCAGTGGCATCCCTTTTTCATGT-AAGTCCACAATTCAGTGGCA-TTTCTTT
1 CAAAGTCCACGACTCAGTGG--TACCTTTTTC-TTTAAAGTCCACAACTCAGTGGCACTCTCTTT
52569 T
63 T
* * * * *
52570 CTAAGTCCACGACTCCGTGGTACCTTTTTCTTTTTAAAGCCCACAACTCCGTGACACTCT-TTTT
1 CAAAGTCCACGACTCAGTGGTACCTTTTTC--TTTAAAGTCCACAACTCAGTGGCACTCTCTTTT
52634 C
1 C
52635 CCTTTTAAGT
Statistics
Matches: 159, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
61 4 0.03
62 59 0.37
63 2 0.01
64 61 0.38
65 2 0.01
66 3 0.02
67 26 0.16
68 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (63 bp):
CAAAGTCCACGACTCAGTGGTACCTTTTTCTTTAAAGTCCACAACTCAGTGGCACTCTCTTTT
Found at i:52649 original size:35 final size:33
Alignment explanation
Indices: 52444--52727 Score: 183
Period size: 27 Copynumber: 9.0 Consensus size: 33
52434 TCTCTTTTCA
* * * *
52444 AAGTCCACGACTCAGTGGCATC-TTTT-CTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * **
52475 AAGTCCACAACTCCGTGGCATCTCTTTCCTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
52508 AAGTCCACAACTCAGTGGCATCCCTTTTT-CATGT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCCTTTT
* * *
52542 AAGTCCACAATTCAGTGGCA--TTTCTT--TTCT
1 AAGTCCACAACTCCGTGGCACCTTT-TTCCTTTT
* * *
52572 AAGTCCACGACTCCGTGGTACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
52605 AAAGCCCACAACTCCGTGACACTCTTTTTCCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
52641 AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
52668 AAGTCTACAACTCCGTGGCA------TCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
52695 AAGTCCACAACTCCGTGGCATCTTTCTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
52728 CAAAAGCTCA
Statistics
Matches: 207, Mismatches: 27, Indels: 36
0.77 0.10 0.13
Matches are distributed among these distances:
27 50 0.24
30 21 0.10
31 24 0.12
32 6 0.03
33 34 0.16
34 38 0.18
35 29 0.14
36 5 0.02
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:52847 original size:49 final size:49
Alignment explanation
Indices: 52787--53771 Score: 807
Period size: 49 Copynumber: 20.7 Consensus size: 49
52777 GGCATCTTCT
* *
52787 TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTC-TC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTCATC
* * * * **
52836 TTTAAGTCCAATATCGTTGGCCTTGAATCAGTATATTGGCACCTTTTTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
52885 TTTAAGACCAATGTCGTTGGCCTTGAATCAACACATTGG------CA--
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* *
52926 --TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
** * * *
52973 TTTAAGTCCGGTATCGCTGGCCTTTAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
53022 TTTAAGACCAATGTCGTTGGCCTTGAATCAACACATTGG------CA--
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
53063 --TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTAGCATCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
** * * *
53110 TTTAAGTCCGGTATCGCTGGCCTTTAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
53159 TTTAAGACCAATGTCGTTGGCCTTGAATCAACACATTGG------CA--
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* ** * *
53200 --TAAGCCCAATGTCGCTAACGTTGAATCAGCACATTGGCATCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
*** * * *
53247 TTTAAGTCTGGTATCGCTGGCTTTGAATCAGCATATTGGCA-CTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
53295 TTTAAGACCAATGTCGTTGGCCTTGAATCAACACATTGG------CA--
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
53336 --TAAGCCCAATGTCGCTGGCCTTAAATC-GACACATTGGCATCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAG-CACATTGGCACCTTCATC
* * *
53383 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATC
*
53435 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * * * ** *
53484 TTTAAGTCTAATATCGCTAGCCTTTAATCAGCATATTGGCGCATTTGTCATA
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT-G-GCACCT-TCATC
*
53536 TTTAAGTCCAATTTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * * * *
53585 TTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGATGC-CTTTGTCTTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTG--GCAC-CT-TCATC
* *
53637 TTTAAGTCCAATGTCGCTGGCCTTAAATCAACACATTGGCACCTTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * * * *
53686 TTTAAGTCCAATATTGATGGCCTTGAATCAACATATTGGTATCTCTATCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-CT-TCATC
** *
53738 TTTAAAACCCAATGTCGTTGGCCTTGAATCAGCA
1 TTT-AAGTCCAATGTCGCTGGCCTTGAATCAGCA
53772 AAAGTGGTTT
Statistics
Matches: 749, Mismatches: 129, Indels: 112
0.76 0.13 0.11
Matches are distributed among these distances:
39 130 0.17
43 6 0.01
45 8 0.01
48 39 0.05
49 393 0.52
50 12 0.02
51 13 0.02
52 124 0.17
53 24 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (49 bp):
TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
Found at i:52946 original size:39 final size:39
Alignment explanation
Indices: 52887--52965 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
52877 CCTTTTTCTT
*
52887 TAAGACCAATGTCGTTGGCCTTGAATCAACACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA
* *
52926 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA
52965 T
1 T
52966 CTTCATCTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (39 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA
Found at i:52956 original size:137 final size:137
Alignment explanation
Indices: 52789--53768 Score: 1174
Period size: 137 Copynumber: 6.9 Consensus size: 137
52779 CATCTTCTTT
* * *
52789 TAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTC-TCTTTAAGTCCAATATCGT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATC-TTCATCTTTAAGTCCAATATCGC
* **
52853 TGGCCTTGAATCAGTATATTGGCACCTTTTTCTTTAAGACCAATGTCGTTGGCCTTGAATCAACA
65 TGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACA
52918 CATTGGCA
130 CATTGGCA
**
52926 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCGGTATCGCT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCT
*
52991 GGCCTTTAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACAC
66 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACAC
53056 ATTGGCA
131 ATTGGCA
* **
53063 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTAGCATCTTCATCTTTAAGTCCGGTATCGCT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCT
*
53128 GGCCTTTAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACAC
66 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACAC
53193 ATTGGCA
131 ATTGGCA
** * ***
53200 TAAGCCCAATGTCGCTAACGTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCTGGTATCGCT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCT
*
53265 GGCTTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACAC
66 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACAC
53329 ATTGGCA
131 ATTGGCA
*
53336 TAAGCCCAATGTCGCTGGCCTTAAATC-GACACATTGGCATCTTCATCTTTAAGTCCAATATCGC
1 TAAGCCCAATGTCGCTGGCCTTGAATCAG-CACATTGGCATCTTCATCTTTAAGTCCAATATCGC
* * *
53400 TGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCA
65 TGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGACCAATGTCGTTGGCCTTGAATCA
*
53465 GCACATTGGCACTTTCA
127 ACACATTGG------CA
* * * * * * * *
53482 TCTTTAAGTCTAATATCGCTAGCCTTTAATCAGCATATTGGCGCATTTGTCATATTTAAGTCCAA
1 ----TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATT-G-GCATCT-TCATCTTTAAGTCCAA
* * * * *
53547 TTTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATTGTTGGCCTTGAA
59 TATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAA
* * *
53612 TCAGCATATTGATGCCTTTGTCTTCTT
124 TCAACACA-T--TG-----G----C-A
* * * * * *
53639 TAAGTCCAATGTCGCTGGCCTTAAATCAACACATTGGCACCTTCATCTTTAAGTCCAATATTGAT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCT
* * *
53704 GGCCTTGAATCAACATATTGGTATCTCTATCATCTTTAAAACCCAATGTCGTTGGCCTTGAATCA
66 GGCCTTGAATCAGCATATTGGCA-C-CT-TCATCTTTAAGA-CCAATGTCGTTGGCCTTGAATCA
53769 GCAAAAGTGG
Statistics
Matches: 744, Mismatches: 66, Indels: 49
0.87 0.08 0.06
Matches are distributed among these distances:
135 1 0.00
136 128 0.17
137 342 0.46
139 1 0.00
140 41 0.06
146 2 0.00
150 102 0.14
151 9 0.01
152 8 0.01
153 85 0.11
154 21 0.03
156 3 0.00
158 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (137 bp):
TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCT
GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAACAC
ATTGGCA
Found at i:52994 original size:88 final size:89
Alignment explanation
Indices: 52837--53475 Score: 316
Period size: 88 Copynumber: 7.0 Consensus size: 89
52827 ACCTTTCTCT
* * * * * ** *
52837 TTAAGTCCAATATCGTTGGCCTTGAATCAGTATATTGGCACCTTTTTCTTTAAGACCAATGTCGT
1 TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGC
*
52902 TGGCCTTGAATCAACACATTGGCA
66 TGGCCTTGAATCAGCACATTGGCA
* * ** *
52926 -TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCGGTATCGC
1 TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGC
* *
52990 TGGCCTTTAATCAGCATATTGGCACCTTCA
66 TGGCCTTGAATCAGCACATTGG------CA
* * * *
53020 TCTTTAAGACCAATGTCGTTGGCCTTGAATCAACACATTGG------CA----TAAGCCCAATGT
1 ---TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGT
*
53075 CGCTGGCCTTGAATCAGCACATTAGCATCTTCA
63 CGCTGGCCTTGAATCAGCACATT-G-----GCA
* ** * * *
53108 TCTTTAAGTCCGGTATCGCTGGCCTTTAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGT
1 ---TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGT
* *
53173 CGTTGGCCTTGAATCAACACATTGGCA
63 CGCTGGCCTTGAATCAGCACATTGGCA
** * * * *** *
53200 -TAAGCCCAATGTCGCTAACGTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCTGGTATCGC
1 TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGC
* *
53264 TGGCTTTGAATCAGCATATTGGCACTTCA
66 TGGCCTTGAATCAGCACATTGG-----CA
* * * *
53293 TCTTTAAGACCAATGTCGTTGGCCTTGAATCAACACATTGG------CA----TAAGCCCAATGT
1 ---TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGT
*
53348 CGCTGGCCTTAAATC-GACACATTGGCATCTTCA
63 CGCTGGCCTTGAATCAG-CACATTGG------CA
* * * * *
53381 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAA
1 ---TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGACCAA
53446 TGTCGCTGGCCTTGAATCAGCACATTGGCA
60 TGTCGCTGGCCTTGAATCAGCACATTGGCA
53476 CTTTCATCTT
Statistics
Matches: 419, Mismatches: 80, Indels: 96
0.70 0.13 0.16
Matches are distributed among these distances:
86 1 0.00
87 27 0.06
88 242 0.58
89 1 0.00
91 2 0.00
92 4 0.01
93 2 0.00
94 4 0.01
95 2 0.00
97 34 0.08
98 66 0.16
101 33 0.08
102 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (89 bp):
TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGC
TGGCCTTGAATCAGCACATTGGCA
Found at i:53083 original size:39 final size:39
Alignment explanation
Indices: 53024--53102 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
53014 CCTTCATCTT
* *
53024 TAAGACCAATGTCGTTGGCCTTGAATCAACACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCAACACATTAGCA
* *
53063 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTAGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCAACACATTAGCA
53102 T
1 T
53103 CTTCATCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (39 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAACACATTAGCA
Found at i:53356 original size:39 final size:39
Alignment explanation
Indices: 53297--53375 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
53287 ACTTCATCTT
* *
53297 TAAGACCAATGTCGTTGGCCTTGAATCAACACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTAAATCAACACATTGGCA
* *
53336 TAAGCCCAATGTCGCTGGCCTTAAATCGACACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTAAATCAACACATTGGCA
53375 T
1 T
53376 CTTCATCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (39 bp):
TAAGACCAATGTCGCTGGCCTTAAATCAACACATTGGCA
Found at i:53516 original size:101 final size:101
Alignment explanation
Indices: 53336--53771 Score: 595
Period size: 101 Copynumber: 4.3 Consensus size: 101
53326 CACATTGGCA
* * *
53336 TAAGCCCAATGTCGCTGGCCTTAAATC-GACACATTGGCATCTTCATCTTTAAGTCCAATATCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAG-CACATTGGCACCTTCATCTTTAAGTCCAATATCGC
53400 TGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
65 TGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
* *
53437 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATCTTTAAGTCTAATATCGCT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
* * * *
53502 AGCCTTTAATCAGCATATTGGCGCATTTGTCATATT
66 GGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
* * *
53538 TAAGTCCAATTTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATTGTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
** *
53603 GGCCTTGAATCAGCATATTGATGCCTTTGTCTTCTT
66 GGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
* * * *
53639 TAAGTCCAATGTCGCTGGCCTTAAATCAACACATTGGCACCTTCATCTTTAAGTCCAATATTGAT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
* *** * *
53704 GGCCTTGAATCAACATATTGGTATCTCTATCATCTT
66 GGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
** *
53740 TAAAACCCAATGTCGTTGGCCTTGAATCAGCA
1 T-AAGTCCAATGTCGCTGGCCTTGAATCAGCA
53772 AAAGTGGTTT
Statistics
Matches: 296, Mismatches: 37, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
101 270 0.91
102 26 0.09
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (101 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCT
GGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
Found at i:57987 original size:11 final size:10
Alignment explanation
Indices: 57972--58017 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
57962 TTTAAATTTT
57972 TAATATTAAA
1 TAATATTAAA
57982 TAAATATTAAA
1 T-AATATTAAA
57993 T-ATATTAAA
1 TAATATTAAA
*
58002 TTATTATTAAA
1 -TAATATTAAA
58013 -AATAT
1 TAATAT
58018 GTATTTAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
9 12 0.39
10 2 0.06
11 17 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TAATATTAAA
Found at i:57999 original size:20 final size:20
Alignment explanation
Indices: 57973--58017 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
57963 TTAAATTTTT
57973 AATATTAAATAAATATTAAA
1 AATATTAAATAAATATTAAA
* * *
57993 TATATTAAATTATTATTAAA
1 AATATTAAATAAATATTAAA
58013 AATAT
1 AATAT
58018 GTATTTAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AATATTAAATAAATATTAAA
Found at i:60537 original size:7 final size:7
Alignment explanation
Indices: 60525--60558 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
60515 TAAATTGGTA
60525 TAATTTT
1 TAATTTT
60532 TAATTTT
1 TAATTTT
60539 TAATTTT
1 TAATTTT
60546 TAATTTT
1 TAATTTT
*
60553 AAATTT
1 TAATTT
60559 AATCAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TAATTTT
Found at i:60647 original size:18 final size:18
Alignment explanation
Indices: 60626--60666 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
60616 ATATTTTACA
*
60626 TAATTTATTATATT-TATT
1 TAATTT-TTATATTAAATT
60644 TAATTTTTATATTAAATT
1 TAATTTTTATATTAAATT
60662 TAATT
1 TAATT
60667 ACTTAAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TAATTTTTATATTAAATT
Found at i:60731 original size:16 final size:16
Alignment explanation
Indices: 60710--60749 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
60700 AATACATCAT
60710 AATTATTTAATTAAAA
1 AATTATTTAATTAAAA
* **
60726 AATTATTTGATTAATT
1 AATTATTTAATTAAAA
60742 AATTATTT
1 AATTATTT
60750 TATTTTAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
AATTATTTAATTAAAA
Found at i:61091 original size:37 final size:37
Alignment explanation
Indices: 61003--61104 Score: 132
Period size: 40 Copynumber: 2.7 Consensus size: 37
60993 TTTTCTTTTT
* ** *
61003 TTATTTTTTAAATAATATATTTAAAGTGCTTTGGGAT
1 TTATTTTTTAAATAATGTATTTAAAGTGCTTTAAGAC
*
61040 TTATTTTTCCTTAAATATTGTATTTAAAGTGCTTTAAGAC
1 TTA-TTTT--TTAAATAATGTATTTAAAGTGCTTTAAGAC
61080 TTATTTTTTAAATAATGTATTTAAA
1 TTATTTTTTAAATAATGTATTTAAA
61105 CTTTAAGTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
37 20 0.36
38 4 0.07
39 4 0.07
40 28 0.50
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (37 bp):
TTATTTTTTAAATAATGTATTTAAAGTGCTTTAAGAC
Found at i:62981 original size:12 final size:12
Alignment explanation
Indices: 62964--62992 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
62954 GCCTAGGCTT
62964 GAGCTTGAGCTA
1 GAGCTTGAGCTA
62976 GAGCTTGAGCTA
1 GAGCTTGAGCTA
62988 GAGCT
1 GAGCT
62993 AAAAGTCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (12 bp):
GAGCTTGAGCTA
Found at i:62983 original size:18 final size:17
Alignment explanation
Indices: 62956--62993 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
62946 CGGGTCGGGC
*
62956 CTAGGCTTGAGCTTGAG
1 CTAGGCTTGAGCTAGAG
62973 CTAGAGCTTGAGCTAGAG
1 CTAG-GCTTGAGCTAGAG
62991 CTA
1 CTA
62994 AAAGTCAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (17 bp):
CTAGGCTTGAGCTAGAG
Found at i:73349 original size:19 final size:19
Alignment explanation
Indices: 73325--73385 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
73315 CAGTAGCTAA
73325 TTATGTATCGATACAACAC
1 TTATGTATCGATACAACAC
*
73344 TTATGTATCGAT---GCA-
1 TTATGTATCGATACAACAC
73359 -T-TGTATCGATACAACAC
1 TTATGTATCGATACAACAC
73376 TTATGTATCG
1 TTATGTATCG
73386 GTATAAATCG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
13 9 0.26
14 1 0.03
16 4 0.12
18 1 0.03
19 19 0.56
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (19 bp):
TTATGTATCGATACAACAC
Found at i:77457 original size:20 final size:20
Alignment explanation
Indices: 77432--77550 Score: 121
Period size: 20 Copynumber: 5.7 Consensus size: 20
77422 TTTTACCCAG
*
77432 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTGTTCA
* * *
77452 ATGTATCGATATATATGGATGA
1 ATGTATCGATACAT-T-GTTCA
*
77474 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTGTTCA
* *
77494 ATGTATCGATACATTCTACCTA
1 ATGTATCGATACATTGT-TC-A
*
77516 GATATATCGATACATTGTTCA
1 -ATGTATCGATACATTGTTCA
77537 ATGTATCGATACAT
1 ATGTATCGATACAT
77551 CTAGTAAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
20 45 0.56
21 4 0.05
22 17 0.21
23 15 0.19
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTGTTCA
Found at i:77537 original size:43 final size:44
Alignment explanation
Indices: 77425--77550 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 44
77415 TCTGTCTTTT
* * * *
77425 TACCCAGATGTATCGATACATTTTTCAATGTATCGATATATATG
1 TACCTAGATGTATCGATACATTCTTCAATGTATCGATACATATC
*
77469 GA--T-GAATGTATCGATACATTCTTCAATGTATCGATACAT-TC
1 TACCTAG-ATGTATCGATACATTCTTCAATGTATCGATACATATC
* *
77510 TACCTAGATATATCGATACATTGTTCAATGTATCGATACAT
1 TACCTAGATGTATCGATACATTCTTCAATGTATCGATACAT
77551 CTAGTAAAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
41 3 0.04
42 32 0.46
43 33 0.47
44 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (44 bp):
TACCTAGATGTATCGATACATTCTTCAATGTATCGATACATATC
Found at i:91416 original size:52 final size:52
Alignment explanation
Indices: 91280--91426 Score: 206
Period size: 52 Copynumber: 2.8 Consensus size: 52
91270 AATATGAAAT
*
91280 TTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
* * * *
91332 TTTACCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGTAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
* **
91384 TTTGCCTGCGTGTATCGATACA-AAAATCAGTGTATCGATACAT
1 TTTGCCTGCATGTATCGATACATTTAAT-AGTGTATCGATACAT
91427 TGTATCGATA
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
51 2 0.02
52 82 0.98
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
Found at i:91432 original size:13 final size:13
Alignment explanation
Indices: 91414--91440 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91404 CAAAAATCAG
91414 TGTATCGATACAT
1 TGTATCGATACAT
91427 TGTATCGATACAT
1 TGTATCGATACAT
91440 T
1 T
91441 TGAGTAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:91471 original size:19 final size:19
Alignment explanation
Indices: 91447--91511 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
91437 CATTTGAGTA
91447 ATGTATCGATACAACACTT
1 ATGTATCGATACAACACTT
*
91466 ATGTATCGAT---GCA--T
1 ATGTATCGATACAACACTT
* *
91480 -TGTTTGGATACAACACTT
1 ATGTATCGATACAACACTT
91498 ATGTATCGATACAA
1 ATGTATCGATACAA
91512 ATCATTGACA
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
13 7 0.21
14 1 0.03
16 4 0.12
18 1 0.03
19 21 0.62
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (19 bp):
ATGTATCGATACAACACTT
Found at i:92379 original size:49 final size:49
Alignment explanation
Indices: 92265--93246 Score: 1116
Period size: 49 Copynumber: 19.8 Consensus size: 49
92255 ATGAGAAGAA
* * * * **
92265 TGCCAATGTGCTTATTTAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGAT---GAAGG
* * * *
92318 TGCCAATATGCTGATTCAAGGCCAGCAATATCGGACTTAAAGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
92367 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA-A-A-GATGAAGG
* * * ** * *
92419 CGCCAATATGCTGATTCAAGGCCAACGATATCAGATTTAAAGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
92468 CGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGG
* * *
92520 CGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
92569 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * *
92618 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
92667 TGCCAATATGCTGATTCAAGGACAGCGATATTGGACTTAAAGGTG-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * * *
92715 TGCCAGTGTGCTGACTCAAGGCCAACTACATTGGACTTAAAGATGCCAA-A
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG--AAGG
* * *
92765 TGCGCTAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGA
1 TGC-C-AATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
92816 TGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
92865 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
92914 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
92963 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
93012 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGTGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AAA--GATGAAGG
* * *
93064 TGCCAATATGCTGATTCAAGGCTAACGATATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGG
* *
93116 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
93165 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
93208 TGCCAATGTGCTGAGTCAAGGCCAACGACATTGGACTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
93247 GAAGGGTTGC
Statistics
Matches: 813, Mismatches: 97, Indels: 47
0.85 0.10 0.05
Matches are distributed among these distances:
43 36 0.04
45 1 0.00
48 39 0.05
49 471 0.58
50 11 0.01
51 11 0.01
52 219 0.27
53 25 0.03
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
Found at i:92679 original size:98 final size:98
Alignment explanation
Indices: 92265--93246 Score: 1116
Period size: 101 Copynumber: 9.9 Consensus size: 98
92255 ATGAGAAGAA
* * * * **
92265 TGCCAATGTGCTTATTTAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGTGCCAATATGCT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGAT---GAAGGTGCCAATATGCT
* * * *
92330 GATTCAAGGCCAGCAATATCGGACTTAAAGATGAAGA
62 GATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
92367 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGATGAAGGCGCCAATATGCTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA-A-A-GATGAAGGTGCCAATATGCTG
* * ** * *
92432 ATTCAAGGCCAACGATATCAGATTTAAAGATGAAGA
63 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
92468 CGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACAAAGGCGCCAATATGTTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGTGCCAATATGCTG
*
92533 ATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
63 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
92569 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
92634 CAAGGCCAGCTACATTGGACTTAAAGATAAAAG
66 CAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * * *
92667 TGCCAATATGCTGATTCAAGGACAGCGATATTGGACTTAAAGGTG-AGGTGCCAGTGTGCTGACT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
92731 CAAGGCCAACTACATTGGACTTAAAGATGCCAA-A
66 CAAGGCCAGCGACATTGGACTTAAAGATG--AAGG
* * * *
92765 TGCGCTAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGA
1 TGC-C-AATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGA
* *
92830 TTCAAGGCCAGCAACATTAGACTTAAAGATGAAGG
64 TTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
92865 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
92930 CAAGGCCAGCAACATTGGACTTAAAGATGAAGG
66 CAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
92963 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
93028 CAAGGCCAGCTATATTGGACTTAAAAGTGATAAAGG
66 CAAGGCCAGCGACATTGGACTT-AAA--GATGAAGG
* * *
93064 TGCCAATATGCTGATTCAAGGCTAACGATATTGGACTTAAAGATGACAAAGGTGCCAATATGCTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGTGCCAATATGCTG
* *
93129 ATTCAAGGCCAGCGATATTGGACTTAAAGATGGAGG
63 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
93165 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGCTGAGT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
93224 CAAGGCCAACGACATTGGACTTA
66 CAAGGCCAGCGACATTGGACTTA
93247 GAAGGGTTGC
Statistics
Matches: 784, Mismatches: 78, Indels: 46
0.86 0.09 0.05
Matches are distributed among these distances:
92 39 0.05
97 45 0.06
98 262 0.33
99 10 0.01
100 42 0.05
101 308 0.39
102 30 0.04
103 4 0.01
104 44 0.06
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (98 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
CAAGGCCAGCGACATTGGACTTAAAGATGAAGG
Found at i:93386 original size:34 final size:34
Alignment explanation
Indices: 93324--93863 Score: 617
Period size: 34 Copynumber: 16.3 Consensus size: 34
93314 TGCTACTAAC
* *
93324 TTGTGGGCTTAACAGGAGA-AA-GATGCCACGGAG
1 TTGTGGACTTAAAAGGA-ACAAGGATGCCACGGAG
* **
93357 TCGTGGACTTAAAAGGAACAAGGGGGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* *
93391 TTGTGGACTTAAATGGAACAAAGATGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* *
93425 TTGTGGACTTAAAAGGAACAAGGGTGCCACAGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
*
93459 TTGTGGACTTAAAAGGAACAAGGATGCCATGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
*
93493 TTGTGGACTTAAAAGGAACAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
*
93527 TTGTGGACTTAAAAGGAACAAGGATGCCATGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* * *
93561 TTGTGGATTTAAATGGAACAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
93595 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
93629 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
93663 TTGTGGACTTAAAAAGGAACAAGGATGCCACGGAG
1 TTGTGGACTT-AAAAGGAACAAGGATGCCACGGAG
**
93698 TTGTGGACTTAAAA-GAA-AA-GATGCCACTAAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* ** * *
93729 TCGTGGACTTTGAA-GAA-AAGGATGTCACTGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
** ** **
93761 TCATGGACTT-TGA-GAA-AAGGATGCCATTGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* ** *
93792 TCGTGGACTT--TGGGAA-AAGGATGCCACTGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
* ** *
93823 TCGTGGACTT--TGGGAA-AAGGATGCCACTGAG
1 TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
*
93854 TCGTGGACTT
1 TTGTGGACTT
93864 TGAAGAAAAA
Statistics
Matches: 458, Mismatches: 44, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
31 110 0.24
32 22 0.05
33 19 0.04
34 273 0.60
35 34 0.07
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.20
Consensus pattern (34 bp):
TTGTGGACTTAAAAGGAACAAGGATGCCACGGAG
Found at i:93820 original size:62 final size:63
Alignment explanation
Indices: 93580--93902 Score: 308
Period size: 62 Copynumber: 5.0 Consensus size: 63
93570 TAAATGGAAC
* * ** * ** *
93580 AAGGATGCCACAGAGTTGTGGACTTAAAAGGAACAAGGATGCCACGGAGTTGTGGACTTAAAAGG
1 AAGGATGCCACTGAGTCGTGGACTT-TGAGGAA-AAGGATGCCACTGAGTCATGGACTT-TAA-G
93645 AA
62 AA
* * ** * ** *
93647 CAAGGATGCCACGGAGTTGTGGACTTAAAAAGGAACAAGGATGCCACGGAGTTGTGGACTTAAAA
1 -AAGGATGCCACTGAGTCGTGGACTT--TGAGGAA-AAGGATGCCACTGAGTCATGGACTT-TAA
93712 GAA
61 GAA
* * * *
93715 AA-GATGCCACTAAGTCGTGGACTTTGAAGAAAAGGATGTCACTGAGTCATGGACTTTGAGAA
1 AAGGATGCCACTGAGTCGTGGACTTTGAGGAAAAGGATGCCACTGAGTCATGGACTTTAAGAA
* * **
93777 AAGGATGCCATTGAGTCGTGGACTTTG-GGAAAAGGATGCCACTGAGTCGTGGACTTTGGGAA
1 AAGGATGCCACTGAGTCGTGGACTTTGAGGAAAAGGATGCCACTGAGTCATGGACTTTAAGAA
* *
93839 AAGGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCATGGACTTTAAGAA
1 AAGGATGCCACTGAGTCGTGGACTTTG-AGGAAAAGGATGCCACTGAGTCATGGACTTTAAGAA
93903 GGTATTTAAA
Statistics
Matches: 226, Mismatches: 25, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
62 63 0.28
63 43 0.19
64 34 0.15
66 19 0.08
67 2 0.01
68 27 0.12
69 38 0.17
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (63 bp):
AAGGATGCCACTGAGTCGTGGACTTTGAGGAAAAGGATGCCACTGAGTCATGGACTTTAAGAA
Found at i:94920 original size:16 final size:17
Alignment explanation
Indices: 94899--94941 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
94889 CTCACCGAGA
*
94899 TTTTCTGTTT-TGTTTT
1 TTTTCTGTTTCTCTTTT
*
94915 TTTTCTTTTTCTCTTTT
1 TTTTCTGTTTCTCTTTT
*
94932 TTTTGTGTTT
1 TTTTCTGTTT
94942 GGAAAAGAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.81
Consensus pattern (17 bp):
TTTTCTGTTTCTCTTTT
Found at i:95202 original size:22 final size:22
Alignment explanation
Indices: 95177--95221 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
95167 GCCTTTGCAC
95177 TTTTTTTTTG-TGTGTTGTTTTG
1 TTTTTTTTTGCTGTGTT-TTTTG
*
95199 TTTTTTTTTGCTTTGTTTTTTG
1 TTTTTTTTTGCTGTGTTTTTTG
95221 T
1 T
95222 GTTTACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.00, C:0.02, G:0.18, T:0.80
Consensus pattern (22 bp):
TTTTTTTTTGCTGTGTTTTTTG
Found at i:95239 original size:34 final size:33
Alignment explanation
Indices: 95176--95239 Score: 76
Period size: 34 Copynumber: 1.9 Consensus size: 33
95166 TGCCTTTGCA
* **
95176 CTTTTTTTTTGTGTGTTGTTTTGTTTTTTTTTG
1 CTTTTTTTTTGTGTGTTCTTTTGACTTTTTTTG
95209 CTTTGTTTTTTGTGT-TTACTTTTGACTTTTT
1 CTTT-TTTTTTGTGTGTT-CTTTTGACTTTTT
95240 CATCATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
33 6 0.23
34 20 0.77
ACGTcount: A:0.03, C:0.06, G:0.16, T:0.75
Consensus pattern (33 bp):
CTTTTTTTTTGTGTGTTCTTTTGACTTTTTTTG
Found at i:102232 original size:52 final size:52
Alignment explanation
Indices: 102087--102212 Score: 198
Period size: 52 Copynumber: 2.4 Consensus size: 52
102077 AATATGAAAT
*
102087 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATATATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
* * * *
102139 TTTTCCTGTATGTATCAATATATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
*
102191 TTTGCCTGCGTGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
102213 AAGATCAGTG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:103985 original size:28 final size:28
Alignment explanation
Indices: 103904--103985 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
103894 TTTTGGAGAT
*
103904 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
103932 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
103960 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
103986 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:104037 original size:51 final size:51
Alignment explanation
Indices: 103968--104137 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 51
103958 GAAATAACGA
* * *
103968 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTGAAAATAAAATCGG
** * * * *
104019 AATTGGAGTATCCCCGATTAAAG-GAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT---GTGAAAAATTGGTATTTTGAAAATAAAATCGG
* * * *
104072 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTGAAAATAAAATCGG
104123 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
104138 TCAGAAATAA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
51 54 0.56
53 41 0.43
54 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:104183 original size:27 final size:28
Alignment explanation
Indices: 104120--104195 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
104110 AAAATAAAGT
*
104120 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
104148 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
104175 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
104196 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:106710 original size:28 final size:28
Alignment explanation
Indices: 106629--106710 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
106619 TTTTGGAGAT
*
106629 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
106657 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
106685 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
106711 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:106853 original size:51 final size:51
Alignment explanation
Indices: 106693--106863 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 51
106683 GAAATAACGA
* * *
106693 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
106745 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
106798 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
*
106849 GGTTGGTGTATCCCC
1 GGTTGGAGTATCCCC
106864 TCAGAAATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
51 38 0.40
52 16 0.17
53 32 0.33
54 10 0.10
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:109224 original size:442 final size:442
Alignment explanation
Indices: 108393--113256 Score: 9565
Period size: 442 Copynumber: 11.0 Consensus size: 442
108383 ATGTGAATAT
*
108393 GAGAGGGATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
108458 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
*
108523 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
108588 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
108653 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
108718 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
*
108783 AGCCTGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
108835 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
108900 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
108965 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
109030 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
109095 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
109160 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
109225 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
109277 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
109342 TGAAACAAAAAAAAGGTCCTAAACTACCACAAAC-AAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
*
109406 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
109471 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
109536 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
109601 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
*
109666 AGCCTGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
109718 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
109783 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
109848 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
109913 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
109978 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
110043 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
110108 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
110160 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
*
110225 TGAAACAAAAAAAAGGTCCTAAACTACCACAAATAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
*
110290 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
110355 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
110420 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
110485 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
110550 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
110602 GAGAGGTATGAACAAAGGATGCAAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCC
1 GAGAGGTATGAACAAAGGATGC-AAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCC
110667 ATGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
65 ATGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
110732 GGTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGA
130 GGTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGA
110797 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
195 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
110862 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
260 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
110927 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
325 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
110992 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
390 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
111045 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
111110 TGAAACAAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
66 TGAAAC-AAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
111175 GGTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCC-AAACAGAAACCAAAAGA
130 GGTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGA
111239 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
195 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
111304 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
260 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
111369 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
325 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
111434 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
390 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
111487 GAGAGGTATGAACAAAGGATGCAAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCC
1 GAGAGGTATGAACAAAGGATGC-AAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCC
111552 ATGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
65 ATGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
111617 GGTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGA
130 GGTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGA
111682 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
195 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
111747 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
260 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
111812 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
325 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
111877 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
390 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
111930 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
111995 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
*
112060 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
112125 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
112190 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
112255 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
112320 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
112372 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
112437 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
112502 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAGAAACCAAAAG
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAAC--AGAAACCAAAAG
112567 ATCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTG
194 ATCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTG
112632 GCCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGG
259 GCCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGG
112697 TAGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTA
324 TAGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTA
112762 CTAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
389 CTAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
112816 GAGAGGTATGAACAAAGGATGC-AAAACA-GGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
112879 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
*
112944 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
113009 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
*
113074 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAATGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
113139 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
113204 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
113256 G
1 G
113257 CTGCCCCTCT
Statistics
Matches: 4400, Mismatches: 15, Indels: 16
0.99 0.00 0.00
Matches are distributed among these distances:
440 261 0.06
441 439 0.10
442 2530 0.57
443 887 0.20
444 283 0.06
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (442 bp):
GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
GTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
Found at i:111228 original size:885 final size:884
Alignment explanation
Indices: 108393--113256 Score: 9601
Period size: 885 Copynumber: 5.5 Consensus size: 884
108383 ATGTGAATAT
*
108393 GAGAGGGATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
108458 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
108523 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
108588 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
108653 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
108718 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
*
108783 AGCCTGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
108848 AAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAAA
456 AAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAAA
108913 AGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGCA
521 AGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGCA
108978 TGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGAGA
586 TGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGAGA
109043 ATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCCAT
651 ATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCCAT
109108 CTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAGAG
716 CTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAGAG
109173 AAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTTAA
781 AAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTTAA
109238 ATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
846 ATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
109277 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
109342 TGAAACAAAAAAAAGGTCCTAAACTACCACAAAC-AAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
109406 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
109471 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
109536 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
109601 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
*
109666 AGCCTGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
109731 AAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAAA
456 AAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAAA
109796 AGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGCA
521 AGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGCA
109861 TGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGAGA
586 TGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGAGA
109926 ATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCCAT
651 ATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCCAT
109991 CTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAGAG
716 CTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAGAG
110056 AAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTTAA
781 AAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTTAA
110121 ATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
846 ATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
110160 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
*
110225 TGAAACAAAAAAAAGGTCCTAAACTACCACAAATAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
110290 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
110355 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
110420 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
110485 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
110550 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
110615 AAAGGATGCAAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAA
456 AAAGGATGC-AAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAA
110680 AAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGC
520 AAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGC
110745 ATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGAG
585 ATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGAG
110810 AATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCCA
650 AATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCCA
110875 TCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAGA
715 TCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAGA
110940 GAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTTA
780 GAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTTA
111005 AATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
845 AATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
111045 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
111110 TGAAACAAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
66 TGAAAC-AAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAA
*
111175 GGTGTTTATGAGCATGGAAAGGGACTTCTAAAATGTCAGAAATGTCC-AAACAGAAACCAAAAGA
130 GGTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGA
111239 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
195 TCAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGG
111304 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
260 CCTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGT
111369 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
325 AGTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTAC
111434 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAA
390 TAGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAA
111499 CAAAGGATGCAAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAA
455 CAAAGGATGC-AAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAA
111564 AAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAG
519 AAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAG
111629 CATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGA
584 CATGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGA
111694 GAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCC
649 GAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCC
111759 ATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAG
714 ATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAG
111824 AGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTT
779 AGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTT
111889 AAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
844 AAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
111930 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
111995 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
112060 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
112125 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
112190 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
112255 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
112320 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
112385 AAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAAA
456 AAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAAA
112450 AGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGCA
521 AGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGCA
112515 TGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAGAAACCAAAAGATCAAGGTAGAGA
586 TGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAAC--AGAAACCAAAAGATCAAGGTAGAGA
112580 GAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCC
649 GAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCC
112645 ATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAG
714 ATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAG
112710 AGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTT
779 AGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTT
112775 AAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
844 AAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
112816 GAGAGGTATGAACAAAGGATGC-AAAACA-GGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
1 GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
112879 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
66 TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
112944 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
131 GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
113009 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
196 CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
*
113074 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAATGATGAAAGGATGTAGCTTTTGGGTA
261 CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
113139 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
326 GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
113204 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAG
391 AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAG
113257 CTGCCCCTCT
Statistics
Matches: 3967, Mismatches: 7, Indels: 12
1.00 0.00 0.00
Matches are distributed among these distances:
883 882 0.22
884 1136 0.29
885 1563 0.39
886 386 0.10
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (884 bp):
GAGAGGTATGAACAAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCA
TGAAACAAAAAAAAGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAG
GTGTTTATGAGCATGGAAAGGGACTTTTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGAT
CAAGGTAGAGAGAATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGC
CTAGTTTCTCCATCTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTA
GTATGGTTGAGAGAAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACT
AGCCAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACAGAGAGGTATGAAC
AAAGGATGCAAAAACAGGGGCTGTTATGGTGATGAAAATGCAAAGAAAGCCATGAAACAAAAAAA
AGGTCCTAAACTACCACAAACAAAAACCACAAGAATGCATGGGAGTCCTAAGGTGTTTATGAGCA
TGGAAAGGGACTTCTAAAATGTCAGAAATGTCCAAAACAGAAACCAAAAGATCAAGGTAGAGAGA
ATATACCAAAAGGCTTGAACTTTCCTTGTCTCCCGGAATAAGGGTTGTTGGCCTAGTTTCTCCAT
CTCTTTGCTATTATTTAGCAAAGAAAGGATGAAAGGATGTAGCTTTTGGGTAGTATGGTTGAGAG
AAGAGCTGTCGGACAAAATTCGTCCCCACATATGTCGGATCCTCCACCTACTAGCCAGGCCTTAA
ATTGTCGAAAATTGACCCGGACAAAATGAGGTGTCTACA
Found at i:113896 original size:55 final size:55
Alignment explanation
Indices: 113796--114633 Score: 1064
Period size: 55 Copynumber: 15.2 Consensus size: 55
113786 ATAAAGTGTA
* * * * * * *
113796 TCCTTCTCATTGAGGAGTAAAAAGTGCCACCCAACTCGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCA-CCAACTTGTGTGGGCTTTAAAAGGTG
*
113852 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* *
113907 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* *
113962 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
*
114017 TCCTGCTCTTTGAGGACTGGACAA--TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
*
114072 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
*
114127 T-CTGCTCTTTG-GGACTGAAAGGTGCCACCAAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACC-AACTTGTGTGGGCTTTAAAAGGTG
* * *
114181 TCCTGCTCGTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
*
114236 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGTGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGT-G
*
114292 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
114347 TCCTGCTCGTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
*
114402 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGC-TTAAAAGG-G
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
114455 T-CTGCTTCTTGGAGGATTGAAAGTTGCCTACCAACTTGTGTGGG--TTAAGAA-GTG
1 TCCTGC-TCTTTGAGGACTGAAAGGTGCC-ACCAACTTGTGTGGGCTTTAA-AAGGTG
* * * * *
114509 TCCTGCGCGTTGAGGAATGGAAA--AGCCACCCAATCTTG-GTGGGGCTTTGAAAGGTTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCA-CCAA-CTTGTGT-GGGCTTTAAAAGG-TG
* * *
114566 TCATGC-CTTTTGAGGACTGAAAGGTGCCACC--GTTGTGTGGGCTTTTTTAAACGGTG
1 TCCTGCTC-TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC---TTTAAAAGGTG
114622 TCCTGCTCTTTG
1 TCCTGCTCTTTG
114634 GACTGGAAAC
Statistics
Matches: 699, Mismatches: 50, Indels: 66
0.86 0.06 0.08
Matches are distributed among these distances:
52 5 0.01
53 55 0.08
54 92 0.13
55 397 0.57
56 115 0.16
57 31 0.04
58 4 0.01
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
Found at i:113931 original size:26 final size:26
Alignment explanation
Indices: 113845--113987 Score: 78
Period size: 26 Copynumber: 5.3 Consensus size: 26
113835 GTGGGCTTTA
* *
113845 AAAGGCGTCCTGCTCTTTGAGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** * *
113871 AAAGGTG-CCACCAACTTGTGTGGG-CTTT
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
113899 AAGAGGTGTCCTGCTCTTTGGGGACTG
1 AA-AGGTGTCCTGCTCTTTGGGGACTG
** * *
113926 AAAGGTG-CCACCAACTTGTGTGGG-CTTT
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
113954 AAGAGGTGTCCTGCTCTTTGGGGACTG
1 AA-AGGTGTCCTGCTCTTTGGGGACTG
113981 AAAGGTG
1 AAAGGTG
113988 CCACCAACTT
Statistics
Matches: 85, Mismatches: 18, Indels: 28
0.65 0.14 0.21
Matches are distributed among these distances:
25 6 0.07
26 22 0.26
27 18 0.21
28 17 0.20
29 16 0.19
30 6 0.07
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.28
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:114317 original size:27 final size:27
Alignment explanation
Indices: 114227--114317 Score: 78
Period size: 27 Copynumber: 3.3 Consensus size: 27
114217 GTGTGGGCTT
114227 TGAAAGGT-GTCCTGCTCTTTGAGGAC
1 TGAAAGGTGGTCCTGCTCTTTGAGGAC
** * * * *
114253 TGAAAGGTGCCACCAGCT-TGTGTGGGC
1 TGAAAGGTG-GTCCTGCTCTTTGAGGAC
*
114280 TTTAAAAGGTGGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGGTCCTGCTCTTTGAGGAC
114309 TGAAAGGTG
1 TGAAAGGTG
114318 CCACCAACTT
Statistics
Matches: 46, Mismatches: 14, Indels: 9
0.67 0.20 0.13
Matches are distributed among these distances:
26 8 0.17
27 14 0.30
28 10 0.22
29 14 0.30
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.29
Consensus pattern (27 bp):
TGAAAGGTGGTCCTGCTCTTTGAGGAC
Found at i:114419 original size:330 final size:328
Alignment explanation
Indices: 113819--114633 Score: 1220
Period size: 330 Copynumber: 2.5 Consensus size: 328
113809 GGAGTAAAAA
* * * * *
113819 GTGCCACCCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACC
1 GTGCCA-CCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCGTTGAGGACTGGAAA-ATGCCACC
* *
113883 AACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGT
64 AACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGT
* *
113947 GGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAG
128 GGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAG
* *
114012 AGGTGTCCTGCTCTTTGAGGACTGGACAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTG
193 AGGTGTCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTG
* *
114077 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCTGC-TCTTTG-GG
258 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGG-GTCTGCTTCTTGGAGG
114140 ACTGAAAG
321 ACTGAAAG
114148 GTGCCACCAAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCGTTGAGGACTGGAAAATGCCACCA
1 GTGCCACC-AACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCGTTGAGGACTGGAAAATGCCACCA
114213 ACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGG
65 ACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGG
114278 GCTTTAAAAGGTGGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGA
130 GCTTTAAAAGGT-GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGA
114343 GGTGTCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGC
194 GGTGTCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGC
* *
114408 TCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTAAAAGGGTCTGCTTCTTGGAGGATT
259 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGGTCTGCTTCTTGGAGGACT
114473 GAAAG
324 GAAAG
* * * *
114478 TTGCCTACCAACTTGTGTGGG--TTAAGAAGTGTCCTGCGCGTTGAGGAATGGAAAA-GCCACCC
1 GTGCC-ACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCGTTGAGGACTGGAAAATGCCA-CC
*
114540 AATCTTG-GTGGGGCTTTGAAAGGTTGTCATGC-CTTTTGAGGACTGAAAGGTGCCACC-G-TTG
64 AA-CTTGTGT-GGGCTTTGAAAGG-TGTCCTGCTC-TTTGAGGACTGAAAGGTGCCACCAGCTTG
*
114601 TGTGGGCTTTTTTAAACGGTGTCCTGCTCTTTG
125 TGTGGGC---TTTAAAAGGTGTCCTGCTCTTTG
114634 GACTGGAAAC
Statistics
Matches: 450, Mismatches: 21, Indels: 29
0.90 0.04 0.06
Matches are distributed among these distances:
327 4 0.01
328 55 0.12
329 154 0.34
330 225 0.50
331 12 0.03
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (328 bp):
GTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCGTTGAGGACTGGAAAATGCCACCAA
CTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGG
CTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGG
TGTCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTC
TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGGTCTGCTTCTTGGAGGACTGA
AAG
Done.