genome.fa.s1364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1364
Parameters: 2 7 7 80 10 50 1000
Length:  118566

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31--425	32	12.3	32	92	4	609	31	35	18	14	1.91
31--433	65	6.3	64	92	3	616	31	34	18	15	1.91
963--1037	20	3.8	20	78	0	87	34	13	12	40	1.81
963--1040	40	2.0	39	87	2	111	34	12	12	39	1.82
7746--7787	3	14.0	3	100	0	84	33	0	0	66	0.92
8366--8394	2	14.5	2	100	0	58	48	0	0	51	1.00
8613--8715	39	2.5	39	89	6	152	28	9	7	54	1.61
8613--8716	41	2.5	41	87	10	151	27	9	7	54	1.60
9214--9288	20	3.8	20	81	0	105	33	12	12	42	1.79
9214--9291	40	2.0	39	92	2	129	33	11	12	42	1.79
13049--13095	3	16.0	3	91	4	78	29	0	0	70	0.88
13362--13411	18	3.1	17	74	25	54	44	0	2	54	1.11
14030--14075	3	15.3	3	90	0	74	67	0	2	30	1.03
14150--14198	15	3.6	15	69	25	54	24	20	6	48	1.72
14121--14287	40	4.0	40	70	23	126	28	20	8	42	1.82
14141--14333	14	14.9	14	67	19	66	26	20	8	43	1.81
14165--14375	114	1.8	115	94	2	379	28	20	9	41	1.83
14244--14314	25	2.8	25	75	8	81	28	19	8	43	1.80
14593--14652	26	2.3	26	97	2	111	60	15	15	10	1.60
14595--14667	26	2.5	30	76	23	91	58	13	17	9	1.61
15083--15223	74	1.9	74	85	2	194	33	34	19	13	1.90
18331--18374	16	2.8	16	85	0	52	36	11	4	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18928--18958	6	5.0	6	92	7	53	64	3	0	32	1.09
18928--18958	13	2.5	12	90	10	53	64	3	0	32	1.09
21538--21604	26	2.6	25	84	9	91	44	16	4	34	1.68
30000--30059	5	11.4	5	75	10	57	36	1	1	60	1.17
29999--30069	28	2.5	26	78	14	70	36	1	1	60	1.14
30141--30193	16	2.8	19	71	28	51	41	3	1	52	1.30
29976--30179	15	12.3	16	68	25	90	41	2	1	54	1.25
30171--30221	15	3.5	15	71	10	52	43	3	0	52	1.19
30141--30215	37	2.1	36	80	12	82	41	4	1	53	1.28
30316--30358	22	2.0	21	86	4	59	55	0	0	44	0.99
30306--30364	30	1.9	32	89	6	95	52	0	1	45	1.10
34093--34118	3	8.7	3	100	0	52	69	0	0	30	0.89
34620--34648	2	14.5	2	100	0	58	48	0	0	51	1.00
42236--42278	22	2.0	22	90	9	70	11	9	0	79	0.95
42235--42277	13	3.3	13	77	9	52	13	6	0	79	0.93
42458--42585	22	5.7	22	73	19	97	42	0	0	57	0.98
42498--42598	16	6.0	16	77	17	98	45	0	0	53	1.07
42499--42593	6	17.8	6	73	22	54	46	0	0	53	1.00
42536--42598	31	2.0	33	90	6	103	46	1	0	52	1.10
42500--42617	53	2.2	53	89	0	173	46	1	0	50	1.17
42650--42715	16	4.2	16	80	5	82	34	1	4	59	1.27
42657--42715	31	1.9	31	85	0	82	35	1	5	57	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42817--42880	29	2.2	28	84	13	78	32	0	0	67	0.91
43167--43224	16	3.8	15	77	18	57	44	0	0	55	0.99
43871--43901	15	2.1	15	100	0	62	32	0	12	54	1.38
46011--46052	20	2.0	20	82	13	50	33	9	4	52	1.55
46442--46566	62	2.0	62	96	0	232	27	20	16	36	1.94
55305--55345	2	20.5	2	89	0	64	46	0	53	0	1.00
55483--55552	4	16.8	4	73	14	52	24	2	1	71	1.08
55494--55552	9	6.9	9	73	7	52	23	1	1	72	1.02
56934--57030	2	49.0	2	81	2	106	40	1	6	52	1.33
57403--57441	3	13.0	3	100	0	78	66	0	0	33	0.92
59507--59567	27	2.3	27	91	0	95	36	19	26	18	1.94
59774--59819	22	2.2	21	88	7	67	43	0	2	54	1.12
59779--59822	7	6.1	7	78	5	52	50	0	2	47	1.13
59829--59870	21	2.0	20	86	4	57	71	0	7	21	1.09
64257--64304	23	2.2	21	76	16	53	39	0	0	60	0.97
64263--64327	23	2.8	23	81	11	71	41	1	1	55	1.18
65802--65838	2	18.5	2	100	0	74	48	0	0	51	1.00
70669--70711	22	1.9	23	85	4	61	60	4	2	32	1.30
71212--71252	21	2.1	19	86	9	55	60	0	0	39	0.96
71484--71545	33	1.9	32	83	3	79	51	0	1	46	1.10
71495--71549	25	2.3	25	84	6	69	49	0	1	49	1.11
72103--72174	28	2.6	28	82	4	83	50	4	9	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72770--72870	37	2.7	37	77	17	111	45	0	0	54	0.99
73240--73281	21	2.0	21	86	9	59	30	0	0	69	0.89
73240--73281	20	2.1	19	86	13	57	30	0	0	69	0.89
73659--73749	33	2.8	32	75	16	91	54	6	4	34	1.46
74235--74279	14	3.3	14	81	3	56	44	0	2	53	1.13
74593--74628	2	18.0	2	100	0	72	50	0	0	50	1.00
74673--74760	19	4.8	19	74	18	71	34	0	2	63	1.07
74651--74732	25	3.5	23	72	19	64	36	0	2	60	1.10
74652--74732	24	3.5	24	72	22	68	37	0	2	60	1.10
74976--75001	2	13.0	2	100	0	52	50	0	0	50	1.00
75827--75884	20	3.1	17	81	16	62	43	0	1	55	1.10
78910--78975	33	2.0	33	100	0	132	36	9	15	39	1.79
79002--79026	2	12.5	2	100	0	50	0	48	0	52	1.00
79180--79223	23	2.0	21	86	8	61	45	0	2	52	1.13
79404--79446	21	2.0	21	100	0	86	27	9	0	62	1.25
79587--79631	17	2.8	17	83	6	58	60	0	0	40	0.97
79622--79659	19	2.0	19	85	10	51	31	0	0	68	0.90
80249--80279	14	2.1	15	94	5	55	58	0	0	41	0.98
80289--80383	33	2.9	33	75	13	83	62	3	0	34	1.11
80500--80538	13	2.8	14	84	11	53	66	0	0	33	0.92
81418--81527	56	2.0	56	96	0	202	33	1	15	49	1.55
87575--87626	17	3.1	17	82	0	68	36	30	9	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89188--89229	17	2.4	18	80	11	52	42	0	2	54	1.13
89294--89338	23	1.9	24	90	4	74	66	2	4	26	1.22
90048--90107	21	2.8	22	82	14	72	68	1	3	26	1.15
91241--91288	17	2.8	18	77	22	59	37	0	2	60	1.09
92262--92297	17	2.1	17	89	0	54	2	19	0	77	0.88
92278--92317	21	1.9	21	85	10	55	0	25	0	75	0.81
93231--93279	22	2.1	22	81	7	53	57	2	4	36	1.30
93451--93502	17	3.0	17	83	8	52	51	1	0	46	1.12
93471--93525	30	2.0	29	82	13	71	47	3	1	47	1.30
95281--95322	22	2.0	21	90	4	66	59	0	0	40	0.97
95689--95911	114	2.0	114	81	3	261	32	4	10	52	1.56
96021--96063	2	21.5	2	95	0	77	48	0	0	51	1.00
96916--96967	26	2.0	26	96	0	95	48	15	3	32	1.63
97311--97350	20	2.0	21	90	9	66	60	0	0	40	0.97
97351--97385	18	1.9	18	88	0	52	40	0	0	60	0.97
97346--97389	19	2.3	18	80	7	52	45	0	0	54	0.99
97659--97722	30	2.0	32	82	14	80	50	3	3	43	1.33
97970--98012	23	1.9	23	86	13	63	51	0	0	48	1.00
98009--98049	22	1.9	21	85	5	55	58	0	0	41	0.98
98063--98118	18	3.1	18	80	14	62	50	1	7	41	1.40
98361--98403	21	2.0	21	86	0	59	20	27	32	18	1.96
98502--98569	12	5.9	11	71	20	50	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104204--104239	18	2.0	18	88	0	54	41	11	0	47	1.39
104213--104261	25	2.0	25	87	0	71	36	14	4	44	1.64
104744--104774	2	15.5	2	100	0	62	51	0	0	48	1.00
107237--107271	16	2.2	16	100	0	70	20	31	20	28	1.97
110920--110954	2	17.5	2	100	0	70	48	0	0	51	1.00
113706--113743	20	1.9	20	94	0	67	57	5	10	26	1.53
113872--113908	12	3.1	12	92	0	65	72	0	2	24	0.97
117208--117257	2	26.0	2	78	8	50	56	0	2	42	1.11

Tables:   1

The End!