genome.fa.s1371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1371
Parameters: 2 7 7 80 10 50 1000
Length:  46357

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5209--5250	6	6.7	6	91	8	66	19	0	2	78	0.86
5209--5253	18	2.3	20	88	11	76	20	0	2	77	0.87
6448--6498	1	51.0	1	96	0	93	0	0	1	98	0.14
6453--6504	26	2.0	26	92	0	86	0	0	7	92	0.39
6504--6609	18	6.2	17	73	16	85	0	0	83	16	0.64
6521--6573	1	53.0	1	84	0	70	0	0	92	7	0.39
6503--6576	15	4.7	16	80	15	75	0	0	86	13	0.57
6523--6609	7	12.7	7	75	17	58	0	0	85	14	0.61
6512--6607	10	9.7	10	76	8	90	0	0	84	15	0.63
12814--12866	2	26.5	2	100	0	106	50	0	0	49	1.00
13425--13463	2	19.5	2	83	0	51	43	2	5	48	1.38
13425--13463	12	3.2	12	92	0	60	43	2	5	48	1.38
13427--13470	10	4.2	10	83	11	52	40	2	9	47	1.48
13429--13474	18	2.6	18	89	0	65	41	4	8	45	1.55
14211--14243	2	16.5	2	93	0	57	48	3	0	48	1.17
16229--16272	20	2.2	20	87	0	61	40	15	11	31	1.83
17241--17292	27	1.9	26	81	14	61	28	13	30	26	1.94
20184--20698	52	9.8	52	71	8	216	37	13	23	25	1.92
20240--20490	104	2.4	103	83	2	315	37	14	23	25	1.92
20495--20683	104	1.8	104	83	0	252	39	13	21	25	1.90
20678--20763	38	2.2	39	91	2	138	25	16	26	31	1.96
20741--20930	49	3.8	49	87	2	254	35	17	22	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20981--21082	32	3.2	32	75	8	102	20	16	32	30	1.95
21087--21161	32	2.3	32	86	4	107	21	17	30	30	1.96
21168--21224	27	2.1	27	86	0	78	38	14	26	21	1.91
21193--21295	34	3.0	34	81	18	149	37	11	31	19	1.87
21263--21322	27	2.2	27	93	0	102	33	13	33	20	1.91
21350--21478	34	3.8	34	79	6	136	38	13	27	20	1.89
21213--21573	158	2.3	150	83	8	429	34	12	30	22	1.91
21505--21813	33	8.9	33	70	16	187	35	13	29	20	1.92
21493--21635	30	4.6	30	74	13	128	34	13	29	21	1.92
21664--21793	66	2.0	66	92	0	215	34	12	30	22	1.91
23119--23162	12	3.5	13	90	9	74	0	0	13	86	0.57
23120--23174	25	2.2	25	83	6	67	0	3	14	81	0.82
29985--30030	22	2.2	21	85	11	60	41	15	15	28	1.87
30578--30607	13	2.4	13	94	5	53	20	3	0	76	0.92
30554--30593	17	2.4	17	91	0	62	17	5	0	77	0.94
30575--30622	14	3.6	13	81	13	53	16	6	2	75	1.11
30662--30703	18	2.5	17	81	11	50	54	0	0	45	0.99
31405--31577	74	2.4	74	83	5	219	35	3	10	50	1.53
34373--34406	14	2.4	14	95	0	59	32	8	8	50	1.64
34524--34577	18	3.2	19	73	24	57	25	14	0	59	1.36
34493--34647	62	2.5	61	77	8	154	25	9	5	59	1.50
34520--34632	31	3.7	30	76	9	102	25	9	3	61	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35486--35614	49	2.6	49	91	3	197	27	19	15	37	1.92
37642--37713	28	2.6	28	88	0	99	23	19	34	22	1.96
37702--37975	52	5.3	52	79	7	288	33	11	25	29	1.91
37703--37975	104	2.6	105	90	2	417	34	11	24	29	1.91
37958--38060	27	3.8	27	92	3	154	21	20	33	24	1.97
38044--38175	51	2.5	51	78	13	133	31	9	26	32	1.89
40522--40547	13	2.0	13	100	0	52	38	15	15	30	1.88
40501--40567	33	2.0	33	88	0	98	43	16	14	25	1.86
40587--40654	19	3.9	18	76	23	83	38	14	11	35	1.83
40609--40633	13	1.9	13	100	0	50	32	16	16	36	1.90
40590--40652	32	2.0	32	96	0	117	36	15	12	34	1.86
40710--40766	21	2.7	21	97	0	105	36	19	10	33	1.86
40771--40818	1	48.0	1	93	0	69	4	2	0	93	0.39
40771--40821	20	2.7	20	91	8	81	7	3	0	88	0.63
41415--42260	55	15.3	55	90	4	1237	20	20	30	28	1.97
41415--42261	166	5.1	166	92	1	1339	20	20	30	28	1.97
42017--42103	29	3.2	26	66	22	70	17	18	35	28	1.93
43225--43299	1	75.0	1	83	0	96	0	4	4	92	0.48

Tables:   1

The End!