Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1376
Parameters: 2 7 7 80 10 50 1000
Length:  56088

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
232--264
2
17.0
2
93
6
59
51
0
0
48
1.00
235--265
15
2.1
15
100
0
62
54
0
0
45
0.99
1069--1122
2
29.5
2
82
17
73
44
0
0
55
0.99
1069--1122
11
5.3
11
86
13
80
44
0
0
55
0.99
3631--3660
2
15.0
2
92
0
51
50
3
0
46
1.18
4190--4231
13
3.3
13
90
3
59
47
4
0
47
1.23
4190--4219
2
15.5
2
93
6
53
50
0
0
50
1.00
5509--5542
17
2.0
17
94
0
59
32
5
0
61
1.20
7890--7934
17
2.6
17
83
13
56
62
0
4
33
1.15
8407--8432
2
13.0
2
100
0
52
50
0
0
50
1.00
13295--13324
2
15.0
2
100
0
60
50
0
0
50
1.00
15461--15518
17
3.4
17
82
2
80
56
0
0
43
0.99
15956--16036
35
2.2
38
76
10
89
48
1
0
50
1.08
16284--16323
2
20.0
2
100
0
80
0
50
0
50
1.00
19208--19282
20
3.8
20
76
0
78
36
13
10
40
1.79
19208--19285
40
2.0
39
84
2
102
35
12
11
39
1.80
20202--20250
23
2.1
23
100
0
98
16
8
8
67
1.40
20196--20250
23
2.5
21
88
11
92
18
10
9
61
1.54
33316--33392
25
2.9
26
83
11
86
84
11
2
1
0.79
33319--33378
23
2.6
23
89
5
86
86
11
1
0
0.64
33318--33373
11
4.8
11
83
12
76
87
12
0
0
0.54
33317--33380
1
64.0
1
74
0
56
87
10
1
0
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33317--33372
21
2.7
20
81
10
67
87
12
0
0
0.54
33320--33392
10
6.8
10
81
10
74
84
10
2
1
0.78
34614--35964
28
47.4
28
85
6
1638
28
32
17
21
1.96
34614--35554
57
16.5
57
93
1
1525
28
32
17
21
1.96
34614--35964
114
11.6
114
87
6
1779
28
32
17
21
1.96
35540--35576
17
2.1
19
90
10
60
32
27
24
16
1.96
35623--35964
145
2.4
144
84
6
417
28
30
18
23
1.97
36441--36517
20
3.9
19
76
6
73
33
12
12
40
1.82
36441--36518
40
2.0
39
84
2
102
33
12
14
39
1.84
37426--37479
21
2.5
22
93
6
101
18
11
9
61
1.55
37426--37486
21
2.9
21
90
4
70
21
11
9
57
1.62
42838--42956
42
2.8
42
89
0
175
9
44
2
43
1.49
46120--46162
19
2.3
18
80
4
50
60
0
6
32
1.23
46208--46245
19
1.9
21
89
10
62
50
0
0
50
1.00
46981--47008
2
14.0
2
100
0
56
50
0
0
50
1.00
50839--51006
8
20.9
8
67
21
59
58
0
2
39
1.11
50839--50882
13
3.2
13
87
6
52
61
0
2
36
1.09
50840--50888
15
3.2
16
83
13
52
61
0
4
34
1.15
50876--50962
33
2.6
32
78
14
95
54
0
1
44
1.07
50900--50993
15
6.0
17
72
27
68
59
0
1
39
1.04
50898--50979
25
3.3
24
72
24
64
58
0
1
40
1.06
51134--51167
10
3.6
10
92
7
54
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51176--51237
23
2.6
24
80
7
74
27
9
6
56
1.56
51228--51267
7
5.9
7
85
5
55
25
2
0
72
0.97
52788--52812
2
12.5
2
100
0
50
52
0
0
48
1.00
54343--54368
3
8.7
3
100
0
52
30
0
0
69
0.89

Tables:   1

The End!