Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1378
Parameters: 2 7 7 80 10 50 1000
Length:  72211

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2046--2797
390
2.0
385
83
5
977
27
15
15
41
1.87
2887--2960
27
2.7
28
77
10
73
55
0
1
43
1.08
3447--3474
14
2.0
14
100
0
56
35
14
14
35
1.86
3651--3687
2
18.5
2
94
0
65
51
2
0
45
1.15
11230--11284
28
2.0
28
100
0
110
18
10
21
49
1.78
12552--12596
22
2.0
22
83
8
56
57
4
2
35
1.31
12794--12827
4
8.8
4
93
6
61
73
0
0
26
0.83
26333--26399
13
4.6
14
74
20
66
64
1
2
31
1.18
26333--26400
15
4.7
15
71
18
54
63
1
2
32
1.18
29683--29721
2
19.5
2
100
0
78
48
0
0
51
1.00
30180--30204
2
12.5
2
100
0
50
52
48
0
0
1.00
30204--30229
2
13.0
2
100
0
52
50
0
0
50
1.00
32081--32151
27
2.6
27
88
6
99
22
7
23
46
1.76
41865--41898
11
2.8
13
86
13
54
64
0
0
35
0.94
41901--41956
29
1.9
29
85
7
78
62
0
5
32
1.18
42155--42188
4
8.5
4
93
0
59
73
0
2
23
0.97
47827--47895
22
3.2
22
73
20
65
60
1
1
36
1.14
49068--49252
34
5.5
34
87
3
257
40
26
7
25
1.82
53666--53848
34
5.4
34
87
3
253
39
26
7
25
1.83
60833--60866
17
2.0
17
88
11
52
58
5
2
32
1.37
61070--61286
34
6.4
34
90
1
303
23
7
28
40
1.81
61070--61286
102
2.1
102
93
0
364
23
7
28
40
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66104--66180
14
6.1
13
75
23
58
66
2
2
28
1.18
66104--66179
39
1.9
39
86
5
109
65
2
2
28
1.19
66121--66180
25
2.4
26
76
18
65
66
3
1
28
1.17
66150--66193
22
2.0
22
86
8
63
65
4
0
29
1.12
67654--67679
8
3.2
8
100
0
52
11
0
0
88
0.52
71376--71447
36
2.0
37
83
8
94
65
2
5
26
1.28

Tables:   1

The End!