genome.fa.s1379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1379
Parameters: 2 7 7 80 10 50 1000
Length:  58234

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--30	12	2.5	12	88	0	51	83	0	10	6	0.81
1857--1910	20	2.7	20	91	0	81	35	16	14	33	1.90
1943--1991	19	2.5	19	83	3	62	36	14	16	32	1.89
4068--4098	14	2.2	14	100	0	62	16	9	32	41	1.80
8941--9016	12	6.9	11	75	15	52	39	2	48	9	1.49
8940--9025	24	3.8	24	72	17	85	41	2	45	10	1.51
8931--9049	42	2.8	42	92	0	193	42	2	46	8	1.47
14437--14490	19	2.8	19	82	2	63	35	14	18	31	1.91
19013--19052	15	2.4	17	88	12	57	85	2	5	7	0.83
19926--19986	28	2.2	28	87	0	86	29	34	16	19	1.94
20321--20385	14	4.9	13	76	16	62	41	13	13	30	1.84
20326--20407	12	6.3	12	79	14	67	39	13	14	32	1.85
20346--20407	12	4.9	12	81	15	72	37	14	14	33	1.87
24807--25038	103	2.3	100	81	6	272	28	27	14	29	1.95
27544--27698	82	1.9	80	84	10	208	43	18	7	30	1.77
35902--35948	18	2.6	18	83	6	51	10	46	0	42	1.38
35933--36014	9	9.8	9	69	15	50	12	36	3	47	1.59
35905--36014	42	2.6	42	82	0	157	11	40	2	45	1.55
42830--43122	157	1.9	157	81	3	356	37	14	17	30	1.90
42838--43188	157	2.2	157	78	3	339	36	15	17	30	1.91
43519--43556	20	1.9	20	88	0	58	28	15	13	42	1.85
44343--45058	159	4.5	159	74	6	455	37	13	16	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44772--45142	160	2.4	157	82	5	444	37	12	15	34	1.85
44954--45386	149	2.8	149	77	13	360	39	12	17	31	1.86
57093--57600	251	2.0	252	93	1	876	23	29	14	32	1.94

Tables:   1

The End!