Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold138
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1735418
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Warning! 2489 characters in sequence are not A, C, G, or T
File 5 of 11
Found at i:694050 original size:27 final size:26
Alignment explanation
Indices: 694020--694128 Score: 88
Period size: 26 Copynumber: 4.3 Consensus size: 26
694010 TGTATAGTTT
694020 ATTAATTAAT-TATATCATAAATATATA
1 ATTAATTAATATATATC-TAAA-ATATA
694047 ATT-ATTAATATATATCTAAAATATA
1 ATTAATTAATATATATCTAAAATATA
*
694072 A-TAATTTAATATA-ATATAAACATAT-
1 ATTAA-TTAATATATATCTAAA-ATATA
* * *
694097 -TTAAATTAATAAATATATATAATAT-
1 ATT-AATTAATATATATCTAAAATATA
694122 ATTAATT
1 ATTAATT
694129 TTTAATATAA
Statistics
Matches: 71, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
24 1 0.01
25 29 0.41
26 32 0.45
27 9 0.13
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTAATTAATATATATCTAAAATATA
Found at i:694091 original size:51 final size:49
Alignment explanation
Indices: 694036--694146 Score: 111
Period size: 51 Copynumber: 2.2 Consensus size: 49
694026 TAATTATATC
* *
694036 ATAAATATATAATT-ATTAATATATATCTAAAATATAATAATTTAATATAAT
1 ATAAATATATAATTAATTAATAAATATATAAAATATAATAATTT--T-TAAT
* * *
694087 ATAAACATAT--TTAAATTAATAAATATATATAATATATTAATTTTTAAT
1 ATAAATATATAATT-AATTAATAAATATATAAAATATAATAATTTTTAAT
*
694135 ATAATTATATAA
1 ATAAATATATAA
694147 CATATATAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
48 12 0.24
49 3 0.06
51 34 0.69
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (49 bp):
ATAAATATATAATTAATTAATAAATATATAAAATATAATAATTTTTAAT
Found at i:694100 original size:20 final size:19
Alignment explanation
Indices: 694075--694122 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
694065 AAATATAATA
694075 ATTTAATATAATATAAACAT
1 ATTTAATATAA-ATAAACAT
* *
694095 ATTTAA-ATTAATAAATAT
1 ATTTAATATAAATAAACAT
*
694113 ATATAATATA
1 ATTTAATATA
694123 TTAATTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 12 0.52
19 5 0.22
20 6 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTAATATAAATAAACAT
Found at i:694359 original size:17 final size:18
Alignment explanation
Indices: 694319--694359 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
694309 ATCTTATAAA
694319 CTAAT-CAATAAAAATAT
1 CTAATGCAATAAAAATAT
694336 -TATATGCAATAAAAA-AT
1 CTA-ATGCAATAAAAATAT
694353 CTAATGC
1 CTAATGC
694360 GAAATAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
16 2 0.10
17 8 0.38
18 11 0.52
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (18 bp):
CTAATGCAATAAAAATAT
Found at i:694882 original size:14 final size:14
Alignment explanation
Indices: 694863--694901 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
694853 AGATAATTTT
*
694863 TTTTATTATTTAGA
1 TTTTATTATTTAAA
*
694877 TTTTATTATATAAA
1 TTTTATTATTTAAA
*
694891 TTTTAATATTT
1 TTTTATTATTT
694902 CTCGAATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (14 bp):
TTTTATTATTTAAA
Found at i:698826 original size:51 final size:52
Alignment explanation
Indices: 698741--698868 Score: 213
Period size: 51 Copynumber: 2.5 Consensus size: 52
698731 CGAAATATGA
*
698741 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
698793 AAATTTGCCTATATGTAT-GATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
698844 AAATTTGCCTGCATGTATCAATACA
1 AAATTTGCCTACATGTATCGATACA
698869 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 49 0.70
52 21 0.30
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:698895 original size:13 final size:13
Alignment explanation
Indices: 698877--698901 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
698867 CAAAGATCAG
698877 TGTATCGATACAA
1 TGTATCGATACAA
698890 TGTATCGATACA
1 TGTATCGATACA
698902 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:698962 original size:13 final size:13
Alignment explanation
Indices: 698940--699029 Score: 54
Period size: 13 Copynumber: 6.0 Consensus size: 13
698930 GGCAATAGCT
*
698940 TTGTAGCGATACA
1 TTGTATCGATACA
698953 TTGTATCGATACAAAA
1 TTGTATCGATAC---A
698969 CTTATGTATCGATACA
1 --T-TGTATCGATACA
698985 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
*
699001 TTTATGTATCGATATA
1 --T-TGTATCGATACA
699017 TTGTATCGATACA
1 TTGTATCGATACA
699030 AATCGTTGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 24
0.70 0.03 0.27
Matches are distributed among these distances:
13 31 0.50
14 2 0.03
16 7 0.11
18 2 0.03
19 20 0.32
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:698987 original size:32 final size:32
Alignment explanation
Indices: 698941--699031 Score: 146
Period size: 32 Copynumber: 2.8 Consensus size: 32
698931 GCAATAGCTT
*
698941 TGTAGCGATACATTGTATCGATACAAAACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
* *
698973 TGTATCGATACATTGTATCGATACAACATTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
*
699005 TGTATCGATATATTGTATCGATACAAA
1 TGTATCGATACATTGTATCGATACAAA
699032 TCGTTGAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAAAACTTA
Found at i:699010 original size:19 final size:18
Alignment explanation
Indices: 698954--699014 Score: 60
Period size: 19 Copynumber: 3.6 Consensus size: 18
698944 AGCGATACAT
*
698954 TGTATCGATACAAAACTTA
1 TGTATCGATACAACA-TTA
698973 TGTATCGAT---ACA-T-
1 TGTATCGATACAACATTA
698986 TGTATCGATACAACATTTA
1 TGTATCGATACAACA-TTA
699005 TGTATCGATA
1 TGTATCGATA
699015 TATTGTATCG
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
13 9 0.26
14 1 0.03
16 5 0.14
18 1 0.03
19 19 0.54
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (18 bp):
TGTATCGATACAACATTA
Found at i:699602 original size:21 final size:21
Alignment explanation
Indices: 699577--699622 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
699567 TGCTTACACG
699577 TTAATTCATGTGCTTTTGTGA
1 TTAATTCATGTGCTTTTGTGA
699598 TTAATTCATGTGCTTTTGTGA
1 TTAATTCATGTGCTTTTGTGA
699619 TTAA
1 TTAA
699623 AATCGCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.22, C:0.09, G:0.17, T:0.52
Consensus pattern (21 bp):
TTAATTCATGTGCTTTTGTGA
Found at i:702215 original size:19 final size:22
Alignment explanation
Indices: 702175--702216 Score: 63
Period size: 19 Copynumber: 2.0 Consensus size: 22
702165 TACCTACTAA
702175 ATTTTATTTGATTTTGATAAAT
1 ATTTTATTTGATTTTGATAAAT
702197 ATTTT-TTT-ATTTT-ATAAAT
1 ATTTTATTTGATTTTGATAAAT
702216 A
1 A
702217 GATGCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 5 0.25
21 3 0.15
22 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (22 bp):
ATTTTATTTGATTTTGATAAAT
Found at i:706883 original size:8 final size:8
Alignment explanation
Indices: 706857--706946 Score: 62
Period size: 8 Copynumber: 10.9 Consensus size: 8
706847 GTATTATAAT
706857 TATATTTA
1 TATATTTA
*
706865 -AAATATTA
1 TATAT-TTA
706873 TATATTTA
1 TATATTTA
*
706881 TATAAATTA
1 TAT-ATTTA
706890 -ATATTT-
1 TATATTTA
706896 TAT-TTTA
1 TATATTTA
706903 TATAATTTTTAA
1 TAT-A--TTT-A
706915 TATATTTA
1 TATATTTA
706923 TATATTTA
1 TATATTTA
*
706931 TATTATTTT
1 TA-TATTTA
706940 TATATTT
1 TATATTT
706947 TTTATTTTAT
Statistics
Matches: 66, Mismatches: 5, Indels: 22
0.71 0.05 0.24
Matches are distributed among these distances:
6 3 0.05
7 11 0.17
8 27 0.41
9 17 0.26
11 4 0.06
12 4 0.06
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TATATTTA
Found at i:706886 original size:20 final size:20
Alignment explanation
Indices: 706848--706926 Score: 56
Period size: 20 Copynumber: 3.9 Consensus size: 20
706838 TTATTTTTTG
*
706848 TATTATA-ATTATATTTAAAA
1 TATTATATATT-TATATAAAA
706868 TATTATATATTTATATAAATTAA
1 TATTATATATTTATAT-AA--AA
* *
706891 TATTTTAT-TTTATAT-AAT
1 TATTATATATTTATATAAAA
*
706909 TTTTAATATATTTATATA
1 TATT-ATATATTTATATA
706927 TTTATATTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
18 4 0.09
19 3 0.06
20 19 0.40
21 5 0.11
22 7 0.15
23 9 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTATATATTTATATAAAA
Found at i:706908 original size:17 final size:17
Alignment explanation
Indices: 706888--706956 Score: 52
Period size: 17 Copynumber: 3.9 Consensus size: 17
706878 TTATATAAAT
706888 TAATATTTTATTTTATA
1 TAATATTTTATTTTATA
*
706905 TAATTTTTAATATATTTATA
1 TAATATTT--TAT-TTTATA
* *
706925 TATTTATATTATTTT-TA
1 TA-ATATTTTATTTTATA
*
706942 T-ATTTTTTATTTTAT
1 TAATATTTTATTTTAT
706957 TTTTATGGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
15 9 0.22
16 1 0.03
17 10 0.25
18 3 0.08
19 6 0.15
20 8 0.20
21 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TAATATTTTATTTTATA
Found at i:706938 original size:28 final size:26
Alignment explanation
Indices: 706896--706956 Score: 61
Period size: 28 Copynumber: 2.3 Consensus size: 26
706886 ATTAATATTT
* *
706896 TATTTTATATAATTTTTAATATATTTA
1 TATTTTATATTATATTT-ATATATTTA
* *
706923 TATATTTATATTATTTTTATAT-TTTT
1 TAT-TTTATATTATATTTATATATTTA
706949 TATTTTAT
1 TATTTTAT
706957 TTTTATGGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 5 0.16
26 6 0.19
27 7 0.23
28 13 0.42
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TATTTTATATTATATTTATATATTTA
Found at i:706956 original size:20 final size:19
Alignment explanation
Indices: 706891--706962 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
706881 TATAAATTAA
706891 TATTTTATTTTATATAATTTT
1 TATTTTATTTT-TAT-ATTTT
* * *
706912 TA--ATATATTTATATATT
1 TATTTTATTTTTATATTTT
*
706929 TATATTATTTTTATATTTTT
1 TATTTTATTTTTATA-TTTT
706949 TATTTTATTTTTAT
1 TATTTTATTTTTAT
706963 GGTGTTATCT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
17 6 0.15
18 3 0.07
19 14 0.34
20 16 0.39
21 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTTATTTTTATATTTT
Found at i:718117 original size:13 final size:14
Alignment explanation
Indices: 718098--718131 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
718088 AGAAAAAATT
718098 GAAAAAATTGAAAA
1 GAAAAAATTGAAAA
718112 -AAAAAATTGAAAA
1 GAAAAAATTGAAAA
718125 GAAAAAA
1 GAAAAAA
718132 AAGTGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (14 bp):
GAAAAAATTGAAAA
Found at i:718124 original size:10 final size:9
Alignment explanation
Indices: 718082--718113 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
718072 AAAAAAAATT
718082 AAAATTAGAA
1 AAAATT-GAA
718092 AAAATTGAA
1 AAAATTGAA
718101 AAAATTGAA
1 AAAATTGAA
718110 AAAA
1 AAAA
718114 AAAATTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (9 bp):
AAAATTGAA
Found at i:718132 original size:38 final size:36
Alignment explanation
Indices: 718064--718142 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 36
718054 TGATTCTTTG
* * *
718064 AAAAATGAAAAAAAAATTAAAATTAGAAAAAATTGA
1 AAAAATGAAAAAAAAATTAAAATGAAAAAAAAGTGA
718100 AAAAATTGAAAAAAAAAATTGAAAA-GAAAAAAAAGTGA
1 AAAAA-TG-AAAAAAAAATT-AAAATGAAAAAAAAGTGA
718138 AAAAA
1 AAAAA
718143 ATTTATTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 5 0.14
37 2 0.05
38 26 0.70
39 4 0.11
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (36 bp):
AAAAATGAAAAAAAAATTAAAATGAAAAAAAAGTGA
Found at i:718133 original size:22 final size:22
Alignment explanation
Indices: 718090--718133 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
718080 TTAAAATTAG
**
718090 AAAAAATTGAAAAAATTGAAAA
1 AAAAAATTGAAAAAATAAAAAA
*
718112 AAAAAATTGAAAAGA-AAAAAA
1 AAAAAATTGAAAAAATAAAAAA
718133 A
1 A
718134 GTGAAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (22 bp):
AAAAAATTGAAAAAATAAAAAA
Found at i:718141 original size:17 final size:16
Alignment explanation
Indices: 718110--718140 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
718100 AAAAATTGAA
*
718110 AAAAAAAATTGAAAAG
1 AAAAAAAAGTGAAAAG
718126 AAAAAAAAGTGAAAA
1 AAAAAAAAGTGAAAA
718141 AAATTTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAAAAAGTGAAAAG
Found at i:721022 original size:13 final size:13
Alignment explanation
Indices: 721004--721034 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
720994 ACAATTCTTC
721004 ATGTATCGATACA
1 ATGTATCGATACA
721017 ATGTATCGATACA
1 ATGTATCGATACA
*
721030 TTGTA
1 ATGTA
721035 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:721022 original size:33 final size:33
Alignment explanation
Indices: 720982--721054 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
720972 CCGTTACAAG
* *
720982 CAATGTATCTATACAATTCT-TCATGTATCGATA
1 CAATGTATCGATAC-ATTCTACCATGTATCGATA
*
721015 CAATGTATCGATACATTGTACCATGTATCGATA
1 CAATGTATCGATACATTCTACCATGTATCGATA
*
721048 CATTGTA
1 CAATGTA
721055 CCATGTATCG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 4 0.11
33 31 0.89
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATTCTACCATGTATCGATA
Found at i:721042 original size:20 final size:20
Alignment explanation
Indices: 721017--721069 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
721007 TATCGATACA
721017 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
721037 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
721057 ATGTATCGATACA
1 ATGTATCGATACA
721070 AACAGTGGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:721143 original size:19 final size:19
Alignment explanation
Indices: 721099--721154 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
721089 CTGCCAATTT
**
721099 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
721119 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
721138 CATGTATCGATAGAATG
1 CATGTATCGATACAATG
721155 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:721161 original size:32 final size:33
Alignment explanation
Indices: 721120--721182 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
721110 ACAATTGTCC
*
721120 ATGTATCGATACAATG-A-ACATGTATCGATAGA
1 ATGTATCGATACAAAGCATA-ATGTATCGATAGA
721152 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
721183 CATCTGGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATAGA
Found at i:729943 original size:19 final size:19
Alignment explanation
Indices: 729895--729950 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
729885 CTGCCAATTT
**
729895 CATATATCGATACAATTGTC
1 CATATATCGATACAA-TGAA
729915 CATATATCGATACAATGAA
1 CATATATCGATACAATGAA
*
729934 CATGTATCGATACAATG
1 CATATATCGATACAATG
729951 TATCAATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (19 bp):
CATATATCGATACAATGAA
Found at i:730347 original size:13 final size:13
Alignment explanation
Indices: 730313--730340 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
730303 AGAGATGACG
730313 TTGTAATTAATTC
1 TTGTAATTAATTC
730326 TTGTAATTAATTC
1 TTGTAATTAATTC
730339 TT
1 TT
730341 AGAATTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTGTAATTAATTC
Found at i:732421 original size:10 final size:10
Alignment explanation
Indices: 732397--732430 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
732387 TAAGGATCGT
*
732397 TTTAAAAATAT
1 TTTAAAAAT-C
732408 TTTAAAAATC
1 TTTAAAAATC
732418 TTTAAAAATC
1 TTTAAAAATC
732428 TTT
1 TTT
732431 TTTCTAGTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (10 bp):
TTTAAAAATC
Found at i:734263 original size:20 final size:20
Alignment explanation
Indices: 734238--734363 Score: 90
Period size: 20 Copynumber: 5.8 Consensus size: 20
734228 TTTTAACTAG
734238 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
734258 ATGTATCGATACATCTAGGTAAAAACACAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
* *
734289 ATGTATCGATACAATGAAGA
1 ATGTATCGATACATTGAAAA
* ***
734309 ATGTATCGATACATTCATGC
1 ATGTATCGATACATTGAAAA
*
734329 ATGTATCGATACATTGAAAG
1 ATGTATCGATACATTGAAAA
734349 ATGTATCGATACATT
1 ATGTATCGATACATT
734364 TGGGTACTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 22
0.73 0.09 0.19
Matches are distributed among these distances:
20 62 0.73
21 1 0.01
22 1 0.01
23 2 0.02
28 2 0.02
29 1 0.01
30 2 0.02
31 14 0.16
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:744071 original size:20 final size:19
Alignment explanation
Indices: 744048--744095 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
744038 TTTATTAATA
*
744048 ATTTAATATATTTAATTATT
1 ATTTAATATATTAAATT-TT
744068 ATTTAATAT-TTAAATTTT
1 ATTTAATATATTAAATTTT
744086 -TTTAATATAT
1 ATTTAATATAT
744096 AAAAATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 8 0.31
18 3 0.12
19 6 0.23
20 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTAATATATTAAATTTT
Found at i:744091 original size:17 final size:17
Alignment explanation
Indices: 744049--744115 Score: 57
Period size: 17 Copynumber: 3.9 Consensus size: 17
744039 TTATTAATAA
*
744049 TTTAATATATTTAATTATT
1 TTTAATAT-TTAAATT-TT
744068 ATTTAATATTTAAATTTT
1 -TTTAATATTTAAATTTT
* **
744086 TTTAATATATAAAAATT
1 TTTAATATTTAAATTTT
744103 TTT--TATTTAAATT
1 TTTAATATTTAAATT
744116 AATCAATCAA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
15 7 0.17
17 17 0.43
18 2 0.05
19 6 0.15
20 8 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTAATATTTAAATTTT
Found at i:744095 original size:19 final size:19
Alignment explanation
Indices: 744049--744106 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
744039 TTATTAATAA
744049 TTTAATATATTT-AATTATT
1 TTTAATATATTTAAATT-TT
744068 ATTT-A-ATATTTAAATTTT
1 -TTTAATATATTTAAATTTT
**
744086 TTTAATATATAAAAATTTT
1 TTTAATATATTTAAATTTT
744105 TT
1 TT
744107 ATTTAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 3 0.09
18 9 0.27
19 18 0.55
20 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTAATATATTTAAATTTT
Found at i:751461 original size:21 final size:20
Alignment explanation
Indices: 751433--751475 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
751423 AAACTTAAAC
*
751433 ATTTGAATT-AAAGTTAGGTT
1 ATTTGAATTGAAA-ATAGGTT
751453 ATTTAGAATTGAAAATAGGTT
1 ATTT-GAATTGAAAATAGGTT
751474 AT
1 AT
751476 GTAGGATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 13 0.65
22 3 0.15
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.42
Consensus pattern (20 bp):
ATTTGAATTGAAAATAGGTT
Found at i:751484 original size:21 final size:21
Alignment explanation
Indices: 751447--751487 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
751437 GAATTAAAGT
*
751447 TAGGTTATTTAGAATTGAAAA
1 TAGGTTATGTAGAATTGAAAA
*
751468 TAGGTTATGTAGGATTGAAA
1 TAGGTTATGTAGAATTGAAA
751488 TTAAGTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (21 bp):
TAGGTTATGTAGAATTGAAAA
Found at i:752899 original size:14 final size:14
Alignment explanation
Indices: 752880--752909 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
752870 TATAATCATG
*
752880 TACAAAATGCAGTA
1 TACAAAATACAGTA
752894 TACAAAATACAGTA
1 TACAAAATACAGTA
752908 TA
1 TA
752910 TGACAGTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.10, T:0.23
Consensus pattern (14 bp):
TACAAAATACAGTA
Found at i:753855 original size:28 final size:29
Alignment explanation
Indices: 753801--753860 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
753791 CATGTCTTTA
753801 TTTAAATGTTATGTCTTTACATAACAA-T
1 TTTAAATGTTATGTCTTTACATAACAACT
*
753829 TTTAAATGTTGTGTTCTTT-CA-ACACAACT
1 TTTAAATGTTATG-TCTTTACATA-ACAACT
753858 TTT
1 TTT
753861 TGATGCAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 1 0.04
28 18 0.64
29 9 0.32
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.48
Consensus pattern (29 bp):
TTTAAATGTTATGTCTTTACATAACAACT
Found at i:753934 original size:18 final size:18
Alignment explanation
Indices: 753899--753947 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
753889 ATTTCGAATT
753899 AAATATTAATTAATAAATAAA
1 AAATA-TAATT-A-AAATAAA
*
753920 TAATATAATTAAAATAAA
1 AAATATAATTAAAATAAA
753938 AAATATAATT
1 AAATATAATT
753948 GCATCTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 16 0.62
19 1 0.04
20 5 0.19
21 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATATAATTAAAATAAA
Found at i:755101 original size:21 final size:21
Alignment explanation
Indices: 755076--755152 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
755066 CTTTTATCCA
755076 AATGTATCGATACATTTATAG
1 AATGTATCGATACATTTATAG
* *
755097 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTATAG
* *
755118 AATGTATCAATACATTCTACA-
1 AATGTATCGATACATT-TATAG
755139 AATGTATCGATACA
1 AATGTATCGATACA
755153 AGGTCCCAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 47 0.98
22 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTATAG
Found at i:755226 original size:32 final size:32
Alignment explanation
Indices: 755190--755265 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
755180 TTCAGCGATT
* *
755190 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACACAAGTGATGTATCGATACAA
*
755222 TGTATCGATAAACAAGTGATGTATCGATACAA
1 TGTATCGATACACAAGTGATGTATCGATACAA
*
755254 TGTATCGCTACA
1 TGTATCGATACA
755266 AAGCTACTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (32 bp):
TGTATCGATACACAAGTGATGTATCGATACAA
Found at i:755227 original size:13 final size:13
Alignment explanation
Indices: 755209--755266 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
755199 ACATAAGTGT
755209 TGTATCGATACAA
1 TGTATCGATACAA
755222 TGTATCGATAAACAAGTGA
1 TGTATCGAT--AC-A---A
755241 TGTATCGATACAA
1 TGTATCGATACAA
*
755254 TGTATCGCTACAA
1 TGTATCGATACAA
755267 AGCTACTACC
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 22 0.58
15 2 0.05
16 2 0.05
17 2 0.05
19 10 0.26
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:757816 original size:53 final size:51
Alignment explanation
Indices: 757694--757816 Score: 151
Period size: 51 Copynumber: 2.4 Consensus size: 51
757684 CAATTCTCCG
* * *
757694 CAATCGGGGATA-TCCCAACTCCGATTTTATTTTCAAAATACTAATTTTCTA
1 CAATCGGGGATACT-CCAACTCCGATTTTATTTCCAAAACACCAATTTTCTA
*
757745 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTT-TCA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTCC--AAAACACCAATTTTCT-A
*
757798 CAATCGAGGATACTCCAAC
1 CAATCGGGGATACTCCAAC
757817 CCCGTTAATC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
51 30 0.48
52 2 0.03
53 30 0.48
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (51 bp):
CAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCTA
Found at i:757919 original size:103 final size:104
Alignment explanation
Indices: 757781--758057 Score: 317
Period size: 103 Copynumber: 2.6 Consensus size: 104
757771 TTATTTCCAA
* *
757781 AAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCC
1 AAAACATCAATTTTT--C-ATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCC
* * *
757846 CATTA-TTTCTGAGGGAACACTCCAA-CCTCGGTTTTATTTCT
63 CATTATTTTC-GAGGGAACACTCCAACCCCCGGCTTTATTCCT
*
757887 AAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCCCGT
1 AAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCCCAT
* * *
757952 TATTTTCGAGGGGATATTCCAACCCCCGGCTTTATTCCT
66 TATTTTCGAGGGAACACTCCAACCCCCGGCTTTATTCCT
* ** * * *
757991 AAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCA-AGGGGATACTCCAAC
1 AAAACATCAATTT-T--TCATCGGGGATACTCCAACCCCGTTA--ATCATCGGGGATACTCCAAC
758055 CCC
61 CCC
758058 GTTACTATCT
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
103 61 0.41
104 28 0.19
105 1 0.01
106 14 0.09
107 25 0.17
108 17 0.11
109 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (104 bp):
AAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCCCAT
TATTTTCGAGGGAACACTCCAACCCCCGGCTTTATTCCT
Found at i:757977 original size:28 final size:27
Alignment explanation
Indices: 757901--757953 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
757891 CATCAATTTT
757901 TCATCGGGGATACTCCAACCCCGTTAA
1 TCATCGGGGATACTCCAACCCCGTTAA
757928 TCATCGGGGATACTCCAACCCCGTTA
1 TCATCGGGGATACTCCAACCCCGTTA
757954 TTTTCGAGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.23
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCGTTAA
Found at i:771911 original size:55 final size:54
Alignment explanation
Indices: 771526--772200 Score: 717
Period size: 55 Copynumber: 11.9 Consensus size: 54
771516 TTTCCTTTTA
* *
771526 AAAGCCCCCACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACCCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACCCC-TTTC
* * *
771582 TTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTT
1 ----AAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGAC-CC----CTTTC
* *
771646 AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTT
1 AAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGAC-CC----CTTTC
* * *
771705 AAAGCCCACACAAGTTGGTGGCACCTTCAATCCTCAAAGAGCAGGACGCCTTTTCTTTT
1 AAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGAC-CC----CTTTC
* * * *
771764 AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGA--C----CCCTTTC
* *
771824 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGGGCAGGACCCCTTTC
1 AAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACCCCTTTC
* * * *
771879 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGAACACATTTC
1 AAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACCCCTTTC
* *
771934 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTT-
1 AAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACCCCT-TTC
* * * *
771989 AAAGCCCATACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGTAGGACACCTTTC
1 AAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACCCCTTTC
* *
772044 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTT-
1 AAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACCCCT-TTC
*
772099 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
1 AAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACCCCTTTC
*
772154 AAAGCCCACA-AGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 AAAGCCCACACA-AGTTGGTGGCAC-TTTCAGTCCTCAAAGAGCAGGA
772201 TACACTTTTT
Statistics
Matches: 557, Mismatches: 36, Indels: 49
0.87 0.06 0.08
Matches are distributed among these distances:
54 12 0.02
55 275 0.49
56 10 0.02
59 137 0.25
60 91 0.16
61 27 0.05
64 4 0.01
65 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (54 bp):
AAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACCCCTTTC
Found at i:772010 original size:165 final size:165
Alignment explanation
Indices: 771526--772200 Score: 795
Period size: 165 Copynumber: 4.0 Consensus size: 165
771516 TTTCCTTTTA
* * *
771526 AAAGCCCCCACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACCCCTTTTCTTTTAAAGC
1 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCA-GAACACTTTTC---TAAAGC
* *
771591 CCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTAAAGCCCACA
62 CCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACGCC---TC--TTAAAGCCCACA
* *
771656 CAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTT
121 CAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGAC-CC----CTTTC
** * * *
771705 AAAGCCCACACAAGTTGGTGGCACCTT-CAATCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGC
1 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGAAC-ACTTTTC---TAAAGC
* * *
771769 CCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTTAAAGCCCACA
62 CCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACGC-----C-TCTTAAAGCCCACA
*
771834 CAAGTTGGTGGCACCTTTCAGTCCCCAAAGGGCAGGACCCCTTTC
121 CAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACCCCTTTC
*
771879 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGAACACATTTC-AAAGCCCAC
1 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGAACACTTTTCTAAAGCCCAC
* * *
771943 ACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCATACAAGTTGGT
66 ACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGT
* *
772008 GGCACCTTTCAGTCCCCAAAGAGTAGGACACCTTTC
130 GGCACCTTTCAGTCCCCAAAGAGCAGGACCCCTTTC
* * *
772044 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCT-TAAAGCCCAC
1 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGAACACTTTTCTAAAGCCCAC
772108 ACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACA-AGAGTTG
66 ACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACA-AGTTG
* * *
772171 GTGGCACTTTTTAGTCCTCAAAGAGCAGGA
128 GTGGCACCTTTCAGTCCCCAAAGAGCAGGA
772201 TACACTTTTT
Statistics
Matches: 444, Mismatches: 39, Indels: 40
0.85 0.07 0.08
Matches are distributed among these distances:
164 3 0.01
165 191 0.43
166 4 0.01
170 25 0.06
171 20 0.05
174 34 0.08
175 18 0.04
177 24 0.05
178 78 0.18
179 44 0.10
180 2 0.00
182 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (165 bp):
AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGAACACTTTTCTAAAGCCCAC
ACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTG
GCACCTTTCAGTCCCCAAAGAGCAGGACCCCTTTC
Found at i:772976 original size:21 final size:21
Alignment explanation
Indices: 772950--773003 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
772940 CTTTTATCCA
772950 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
772971 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
772992 AATGTATCGATA
1 AATGTATCGATA
773004 TAAGGTCCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:773082 original size:32 final size:32
Alignment explanation
Indices: 773046--773118 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 32
773036 AGCGATTTGT
* * *
773046 ATCGATACATAAGTGTTGTATCGATACAATGA
1 ATCGATACACAAGTGATATATCGATACAATGA
*
773078 ATCGATACACAAGTGATATATCGATACAATGT
1 ATCGATACACAAGTGATATATCGATACAATGA
*
773110 ATCGCTACA
1 ATCGATACA
773119 AAGCTACTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (32 bp):
ATCGATACACAAGTGATATATCGATACAATGA
Found at i:775605 original size:53 final size:51
Alignment explanation
Indices: 775489--775611 Score: 151
Period size: 53 Copynumber: 2.4 Consensus size: 51
775479 CAATTCTCCG
* *
775489 CAATCGGGGATA-TCCTAACTCCGATTTTATTTTCAAAACACTAATTTTCTA
1 CAATCGGGGATACTCC-AACTCCGATTTTATTTCCAAAACACCAATTTTCTA
** *
775540 TTATCGGAGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTT-TCA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTCC--AAAACACCAATTTTCT-A
775593 CAATCGGGGATACTCCAAC
1 CAATCGGGGATACTCCAAC
775612 CCCGTTAATC
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
51 26 0.43
52 4 0.07
53 30 0.50
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (51 bp):
CAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCTA
Found at i:775735 original size:103 final size:103
Alignment explanation
Indices: 775551--775824 Score: 325
Period size: 103 Copynumber: 2.6 Consensus size: 103
775541 TATCGGAGAT
* * * *
775551 ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCG
1 ACTCCAACCCCGGTTTTATTT-C-TAAAACATCAATTTTT--C-ATCGGGGATACTCCAACCCCG
775616 TTAATCATCGGGGATACTCCAACCCCGTTA-TTTCTGAGAGAAC
61 TTAATCATCGGGGATACTCCAACCCCGTTATTTTC-GAGAGAAC
775659 ACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTAAT
1 ACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTAAT
* * *
775724 CATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
66 CATCGGGGATACTCCAACCCCGTTATTTTCGAGAGAAC
* * * * ** *
775762 ACTCCAACCCCCAGCTTTATTCCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCC
1 ACTCCAA-CCCCGGTTTTATTTCTAAAACATCAATTT-T--TCATCGGGGATACTCCAACCCC
775825 ATTACTATCT
Statistics
Matches: 147, Mismatches: 14, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
103 63 0.43
104 28 0.19
105 1 0.01
106 14 0.10
107 22 0.15
108 19 0.13
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (103 bp):
ACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTAAT
CATCGGGGATACTCCAACCCCGTTATTTTCGAGAGAAC
Found at i:775768 original size:28 final size:27
Alignment explanation
Indices: 775696--775772 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 27
775686 CATCAATTTT
775696 TCATCGGGGATACTCCAACCCCGTTAA
1 TCATCGGGGATACTCCAACCCCGTTAA
775723 TCATCGGGGATACTCCAACCCCGTT-A
1 TCATCGGGGATACTCCAACCCCGTTAA
**
775749 TTTTCGAGGGGATACTCCAACCCC
1 TCATC--GGGGATACTCCAACCCC
775773 CAGCTTTATT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 4 0.09
27 25 0.54
28 17 0.37
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCGTTAA
Found at i:775851 original size:52 final size:51
Alignment explanation
Indices: 775756--775855 Score: 125
Period size: 52 Copynumber: 1.9 Consensus size: 51
775746 TTATTTTCGA
*
775756 GGGGATACTCCAACCCCCAGCTTTATTCCTAAAATATTGATTTCTCATAATC
1 GGGGATACTCCAACCCCCA-CTTTATTCCTAAAATATTAATTTCTCATAATC
775808 GGGGATACTCCAA-CCCCA-TTACTATCTCC-AAAATATTAAATTTCTCAT
1 GGGGATACTCCAACCCCCACTT--TAT-TCCTAAAATATT-AATTTCTCAT
775856 CGGGAAATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
49 2 0.05
51 16 0.37
52 25 0.58
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCCACTTTATTCCTAAAATATTAATTTCTCATAATC
Found at i:777343 original size:19 final size:19
Alignment explanation
Indices: 777298--777369 Score: 99
Period size: 19 Copynumber: 3.7 Consensus size: 19
777288 TTTCAACAAT
*
777298 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACATA-AGT-A
*
777319 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTA
*
777338 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTA
777357 TTGTATCGATACA
1 TTGTATCGATACA
777370 ATGTATCACT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
19 31 0.65
20 3 0.06
21 14 0.29
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:781179 original size:13 final size:13
Alignment explanation
Indices: 781161--781185 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
781151 CATAAAGTGT
781161 TGTATCGATACAA
1 TGTATCGATACAA
781174 TGTATCGATACA
1 TGTATCGATACA
781186 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:781203 original size:32 final size:33
Alignment explanation
Indices: 781141--781206 Score: 100
Period size: 32 Copynumber: 2.0 Consensus size: 33
781131 TTCAACGATT
781141 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
781174 TGTATCGATACAT-AAGTTTTGTAGT-GATACAA
1 TGTATCGATACATAAAGTGTTGTA-TCGATACAA
781206 T
1 T
781207 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
32 17 0.55
33 14 0.45
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:781265 original size:13 final size:13
Alignment explanation
Indices: 781247--781271 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
781237 ATTACTCAAA
781247 TGTATCGATACAT
1 TGTATCGATACAT
781260 TGTATCGATACA
1 TGTATCGATACA
781272 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:781324 original size:52 final size:52
Alignment explanation
Indices: 781280--781408 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
781270 CACTGATCTT
781280 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
781332 TGTATCTATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
781384 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
781409 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:785704 original size:11 final size:11
Alignment explanation
Indices: 785688--785732 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 11
785678 AAAAGTAAAC
785688 ACAAAAAAAAA
1 ACAAAAAAAAA
785699 ACAAAAAACAAA
1 ACAAAAAA-AAA
785711 ACAAAAAAAAA
1 ACAAAAAAAAA
785722 CACAGAAAAAA
1 -ACA-AAAAAA
785733 GGTGCAAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.35
12 14 0.45
13 6 0.19
ACGTcount: A:0.84, C:0.13, G:0.02, T:0.00
Consensus pattern (11 bp):
ACAAAAAAAAA
Found at i:786000 original size:16 final size:16
Alignment explanation
Indices: 785972--786014 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
785962 GCTCTTTTCC
* *
785972 AAACACAAAAAAAAGA
1 AAACAGAAAAAAAACA
*
785988 GAAAAAGAAAAAAAACA
1 -AAACAGAAAAAAAACA
786005 AAACAGAAAA
1 AAACAGAAAA
786015 TCTCGGTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.81, C:0.09, G:0.09, T:0.00
Consensus pattern (16 bp):
AAACAGAAAAAAAACA
Found at i:787080 original size:62 final size:61
Alignment explanation
Indices: 787007--787224 Score: 262
Period size: 62 Copynumber: 3.5 Consensus size: 61
786997 TTCAAATACC
* *
787007 TTCTT-AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTT
1 TTCTTCAAAGTCCACGACTCAGTGGC-ATCTTTTCTCAAAGTCCACGACTCAGTGGCATTTT
* * *
787068 TTCTTCAAAGTCCATGACTCAGTGGCGT-TTTGTCTCAAAGTCCACGACTCAGTGGCATCCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTTT-TCTCAAAGTCCACGACTCAGTGGCAT-TTT
* * *
787130 TTCTTTAAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGTCCATGACTCAGTGGCATTTT
1 TTCTTCAAAGTCCACGACTCAGTGGCAT-CTTTTC-TCAAAGTCCACGACTCAGTGGCATTTT
* * * *
787193 GTC-TCAAAGTCCACCACTCTGTGGCACCTTTT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTTTT
787225 TCTTTTCAAA
Statistics
Matches: 135, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
60 2 0.01
61 36 0.27
62 66 0.49
63 6 0.04
64 25 0.19
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (61 bp):
TTCTTCAAAGTCCACGACTCAGTGGCATCTTTTCTCAAAGTCCACGACTCAGTGGCATTTT
Found at i:787181 original size:94 final size:94
Alignment explanation
Indices: 787012--787262 Score: 341
Period size: 94 Copynumber: 2.7 Consensus size: 94
787002 ATACCTTCTT
* * * *
787012 AAAGTCCACGACTCAGTGGCAAT-CTCTTC-TCAAAGCCCACGACTCAGTGGCAT-TTTTTCTTC
1 AAAGTCCACGACTCAGTGGC-ATCCTTTTCTTTAAAGCCCACGACTCAGTGGCATCCTTTTCTTT
*
787074 AAAGTCCATGACTCAGTGGCGTTTTGTCTC
65 AAAGTCCATGACTCAGTGGCATTTTGTCTC
*
787104 AAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGTCCACGACTCAGTGGCATCCTTTTCTTTA
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGCCCACGACTCAGTGGCATCCTTTTCTTTA
787169 AAGTCCATGACTCAGTGGCATTTTGTCTC
66 AAGTCCATGACTCAGTGGCATTTTGTCTC
* * * *
787198 AAAGTCCACCACTCTGTGGCA-CCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCA-CCTTTTCT
1 AAAGTCCACGACTCAGTGGCATCC-TTTTC-TTT-AAAGCCCACGACTCAGTGGCATCCTTTTCT
787261 TT
63 TT
787263 TCAAAGCCCA
Statistics
Matches: 142, Mismatches: 11, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
91 2 0.01
92 25 0.18
93 24 0.17
94 60 0.42
95 13 0.09
96 18 0.13
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (94 bp):
AAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGCCCACGACTCAGTGGCATCCTTTTCTTTA
AAGTCCATGACTCAGTGGCATTTTGTCTC
Found at i:787235 original size:34 final size:34
Alignment explanation
Indices: 787196--787644 Score: 617
Period size: 34 Copynumber: 13.4 Consensus size: 34
787186 GCATTTTGTC
* * *
787196 TCAAAGTCCACCACTCTGTGGCACCTTTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
787230 TCAAAGCCCACAACTCCGTGGCACC-TTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
787263 TCAAAGCCCACAACTTCGTGGCACCTTTTT-TTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
787296 T-AAAGCCCACCACTCCGTGGCACC-TTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
* * * * *
787328 TCAAAACTCACCATTCCGTGGCACCTTTTCCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
787362 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
787396 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
* *
787430 TCAAAGCCCACCACTCCGTGACA-CTTTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
787463 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
787497 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
* *
787531 TCAAAACCCACCACTCCGTGGCACC-TTTTCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
* *
787564 TTAAAGCCCACAACTCCGTGGCTCC-TTTTCTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTT
* *
787598 TCAAAGCCCATAACTCCGTGGCATTCCTTTTCCTTT
1 TCAAAGCCCACAACTCCGTGGCA--CCTTTTTCTTT
787634 T-AAAGCCCACA
1 TCAAAGCCCACA
787645 CGAGTTGGTG
Statistics
Matches: 372, Mismatches: 34, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
31 4 0.01
32 25 0.07
33 120 0.32
34 204 0.55
35 9 0.02
36 6 0.02
37 4 0.01
ACGTcount: A:0.20, C:0.35, G:0.11, T:0.34
Consensus pattern (34 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
Found at i:787284 original size:67 final size:67
Alignment explanation
Indices: 787102--787644 Score: 624
Period size: 67 Copynumber: 8.2 Consensus size: 67
787092 GCGTTTTGTC
* * * * * *
787102 TCAAAGTCCACGACTCAGTGGCATCCTTTTC-TTT-AAAGTCCACGACTCAGTGGCATCC-TTTT
1 TCAAAGCCCACAACTCCGTGGCA-CCTTTTCTTTTCAAAGCCCACAACTCCGTGGCA-CCTTTTT
787164 C-TT
64 CTTT
* ** * * * * * *
787167 T-AAAGTCCATGACTCAGTGGCA--TTTT-GTCTCAAAGTCCACCACTCTGTGGCACCTTTTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
787228 TT
66 TT
*
787230 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTTCGTGGCACCTTTTT-T
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
787294 TT
66 TT
* * * * * *
787296 T-AAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAACTCACCATTCCGTGGCACCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
787360 TT
66 TT
* *
787362 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACC-TTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
787427 TTT
65 TTT
* * * *
787430 TCAAAGCCCACCACTCCGTGACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
787495 TT
66 TT
* * *
787497 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAACCCACCACTCCGTGGCACC-TTTTC
1 TCAAAGCCCACAACTCCGTGGCACC-TTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
787561 TTT
65 TTT
* * *
787564 TTAAAGCCCACAACTCCGTGGCTCCTTTTCTTTTTCAAAGCCCATAACTCCGTGGCATTCCTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTC-TTTTCAAAGCCCACAACTCCGTGGCA--CCTTTT
*
787629 CCTTT
63 TCTTT
787634 T-AAAGCCCACA
1 TCAAAGCCCACA
787645 CGAGTTGGTG
Statistics
Matches: 421, Mismatches: 41, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
61 8 0.02
62 24 0.06
63 3 0.01
64 37 0.09
65 55 0.13
66 17 0.04
67 168 0.40
68 89 0.21
69 12 0.03
70 8 0.02
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.34
Consensus pattern (67 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
TT
Found at i:787457 original size:101 final size:100
Alignment explanation
Indices: 787198--787643 Score: 655
Period size: 101 Copynumber: 4.4 Consensus size: 100
787188 ATTTTGTCTC
* * * *
787198 AAAGTCCACCACTCTGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTT
*
787263 TCAAAGCCCACAACTTCGTGGCACCTTTT-TTTTT
66 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTT
* * * *
787297 AAAGCCCACCACTCCGTGGCACC-TTTTCTTTTCAAAACTCACCATTCCGTGGCACCTTTTCCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT-CTT
*
787361 TTCAAAGCCCACCACTCCGTGGCACCTTTTTCTTTTT
65 TTCAAAGCCCACAACTCCGTGGCACC-TTTTCTTTTT
* *
787398 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGACACTTTTTCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTT
*
787463 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
66 TCAAAGCCCACAACTCCGTGGCACC-TTTTCTTTTT
*
787499 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAACCCACCACTCCGTGGCACCTTTTCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTT
* *
787564 TTAAAGCCCACAACTCCGTGGCTCCTTTTCTTTTT
66 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTT
* *
787599 CAAAGCCCATAACTCCGTGGCATTCCTTTTCCTTTT-AAAGCCCAC
1 -AAAGCCCACAACTCCGTGGCA--CCTTTTTCTTTTCAAAGCCCAC
787644 ACGAGTTGGT
Statistics
Matches: 317, Mismatches: 23, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
98 33 0.10
99 48 0.15
100 14 0.04
101 171 0.54
102 40 0.13
103 11 0.03
ACGTcount: A:0.20, C:0.35, G:0.11, T:0.34
Consensus pattern (100 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTT
TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTT
Found at i:787674 original size:33 final size:33
Alignment explanation
Indices: 787634--787698 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
787624 CTTTTCCTTT
*
787634 TAAAGCCCACACGAGTTGGTGGCAACCATTCTC
1 TAAAGCCCACACAAGTTGGTGGCAACCATTCTC
*
787667 TAAAGCCCACACAAGTTGGTGGCAACCCTTCT
1 TAAAGCCCACACAAGTTGGTGGCAACCATTCT
787699 AAGCCCAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.22
Consensus pattern (33 bp):
TAAAGCCCACACAAGTTGGTGGCAACCATTCTC
Found at i:787764 original size:49 final size:49
Alignment explanation
Indices: 787711--788217 Score: 594
Period size: 43 Copynumber: 10.7 Consensus size: 49
787701 GCCCAATATC
787711 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
* *
787760 GCTGGCCTTGAATCAGCACATTGG---CA-C--CTTTAAGTCCAATATA
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
*
787803 GCTGGCCTTGAATCAGCATATTGGCACCTTCCATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCATATTGGCACCAT-CATCTTTAAGTCCAATGTA
* * *
787853 GCTGGCCTTGAATCAGCACACTGG---CA-C-T-TTTAAGTCCAATATA
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
* *
787896 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
* *
787945 GCTGGCCTTGAATCAGCACATTGGCA-C--CA---TTAAGTCCAATATA
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
*
787988 GCTGGCCTTGAATCAGCATATTGGCACCATTATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
788037 GCTGGCCTTGAATCAGCATATTGG------CATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
* * * * *
788080 GCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
* ** *
788129 GCTGGCCTTGAATCAGCATATTGGCGCTTTTGTCATCTTTTAAGTCCAATGTC
1 GCTGGCCTTGAATCAGCATATTGGCAC---CATCATC-TTTAAGTCCAATGTA
* * *
788182 GCTGGCCTTGAATCAGCACATTAGCACCTTCATCTT
1 GCTGGCCTTGAATCAGCATATTGGCACCATCATCTT
788218 CAACATTCCT
Statistics
Matches: 394, Mismatches: 35, Indels: 58
0.81 0.07 0.12
Matches are distributed among these distances:
43 152 0.39
44 2 0.01
45 2 0.01
46 6 0.02
47 2 0.01
48 3 0.01
49 142 0.36
50 42 0.11
52 5 0.01
53 38 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
GCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTA
Found at i:787978 original size:92 final size:92
Alignment explanation
Indices: 787693--788153 Score: 753
Period size: 92 Copynumber: 5.0 Consensus size: 92
787683 TGGTGGCAAC
* * *
787693 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
787758 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
787786 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCCATCTTTAAGTCCAATG
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-CATCTTTAAGTCCAATG
*
787851 TAGCTGGCCTTGAATCAGCACACTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* *
787879 CTTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
787944 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
787971 CCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATT-ATCTTTAAGTCCAATG
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTCATCTTTAAGTCCAATG
*
788035 TAGCTGGCCTTGAATCAGCATATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
788063 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* *
788128 CGCTGGCCTTGAATCAGCATATTGGC
66 AGCTGGCCTTGAATCAGCACATTGGC
788154 GCTTTTGTCA
Statistics
Matches: 347, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
91 2 0.01
92 249 0.72
93 96 0.28
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:788188 original size:53 final size:49
Alignment explanation
Indices: 788061--788217 Score: 224
Period size: 49 Copynumber: 3.1 Consensus size: 49
788051 AGCATATTGG
*
788061 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTT
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCACCTT
* * * * *
788110 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTTGT
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCAC--CT-T
788162 CATCTTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCACCTT
1 CATC-TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCACCTT
788212 CATCTT
1 CATCTT
788218 CAACATTCCT
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
49 43 0.46
50 5 0.05
51 2 0.02
52 5 0.05
53 38 0.41
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.34
Consensus pattern (49 bp):
CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCACCTT
Found at i:789073 original size:13 final size:13
Alignment explanation
Indices: 789055--789111 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
789045 CATAAAGTGT
789055 TGTATCGATACAA
1 TGTATCGATACAA
789068 TGTATCGATACATAA
1 TGTATCGATAC--AA
*
789083 GTGTTGTATCTATACAA
1 ----TGTATCGATACAA
789100 TGTATCGATACA
1 TGTATCGATACA
789112 TAAGTTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 22 0.61
15 2 0.06
17 2 0.06
19 10 0.28
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:789090 original size:32 final size:32
Alignment explanation
Indices: 789035--789132 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
789025 TTCAACGATT
789035 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
*
789068 TGTATCGATACATAAGTGTTGTATCTATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
789100 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
789132 T
1 T
789133 TTAAGCTACT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 49 0.79
33 13 0.21
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:789092 original size:19 final size:18
Alignment explanation
Indices: 789033--789130 Score: 81
Period size: 19 Copynumber: 5.8 Consensus size: 18
789023 ATTTCAACGA
789033 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
789052 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
789068 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
789084 TGTTGTATCTATAC--AA-
1 T-TTGTATCGATACATAAG
789100 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
789116 TTTTGTATCGATACA
1 -TTTGTATCGATACA
789131 ATTTAAGCTA
Statistics
Matches: 64, Mismatches: 2, Indels: 26
0.70 0.02 0.28
Matches are distributed among these distances:
13 21 0.33
15 4 0.06
17 4 0.06
19 23 0.36
20 12 0.19
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:789191 original size:13 final size:13
Alignment explanation
Indices: 789173--789197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
789163 ATTACTCAAA
789173 TGTATCGATACAT
1 TGTATCGATACAT
789186 TGTATCGATACA
1 TGTATCGATACA
789198 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:796050 original size:12 final size:11
Alignment explanation
Indices: 796008--796052 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 11
795998 AAAAGTAAAC
796008 ACAAAAAAAAA
1 ACAAAAAAAAA
*
796019 ATAAAAAACAAA
1 ACAAAAAA-AAA
796031 ACAAAAAAAAA
1 ACAAAAAAAAA
796042 CACAGAAAAAA
1 -ACA-AAAAAA
796053 GGTGCAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 10 0.34
12 13 0.45
13 6 0.21
ACGTcount: A:0.84, C:0.11, G:0.02, T:0.02
Consensus pattern (11 bp):
ACAAAAAAAAA
Found at i:797401 original size:30 final size:30
Alignment explanation
Indices: 797331--797389 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
797321 CTTCAAATAC
* *
797331 CTTCTTAAAGTCCACGACTCAGTGGCAATCT
1 CTTCTCAAAGCCCACGACTCAGTGGC-ATCT
797362 CTTCTCAAAGCCCACGACTCAGTGGCAT
1 CTTCTCAAAGCCCACGACTCAGTGGCAT
797390 TTTGTCTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (30 bp):
CTTCTCAAAGCCCACGACTCAGTGGCATCT
Found at i:797435 original size:34 final size:34
Alignment explanation
Indices: 797396--797810 Score: 567
Period size: 34 Copynumber: 12.3 Consensus size: 34
797386 GCATTTTGTC
797396 TCAAAGTCCC-CCACTCCGTGGCACCTTTTTCTTT
1 TCAAAG-CCCACCACTCCGTGGCACCTTTTTCTTT
*
797430 TCAAAGCCCACAACTCCGTGGCACC-TTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
* *
797463 TCAAATCCCACAACTCCGTGGCACC-TTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
*
797496 TTAAAGCCCACCACTCCGTGGCACC-TTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
* *
797529 TCAAAACCCACCACTCCGTGGCACCTTTTCCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
797563 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
797597 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
*
797631 TCAAAGCCCACCACTCCATGGCA-CTTTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
* * *
797664 TTAAAGCCCACAACTCCGTGACACCTTTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
*
797698 TCAAAGCCCACCACTCTGTGGCACC-TTTTCTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
* * ** *
797731 TTAAAACCCATAACTCCGTGGCTCC-TTTTCTTTT
1 TCAAAGCCCACCACTCCGTGGCACCTTTTTC-TTT
* * *
797765 TCAAGGCCCACAACTCCGTGGCACTCCTTTTCCTTT
1 TCAAAGCCCACCACTCCGTGGCA--CCTTTTTCTTT
797801 T-AAAGCCCAC
1 TCAAAGCCCAC
797811 ACGAGTTGGT
Statistics
Matches: 342, Mismatches: 32, Indels: 13
0.88 0.08 0.03
Matches are distributed among these distances:
33 157 0.46
34 167 0.49
35 8 0.02
36 6 0.02
37 4 0.01
ACGTcount: A:0.20, C:0.37, G:0.11, T:0.33
Consensus pattern (34 bp):
TCAAAGCCCACCACTCCGTGGCACCTTTTTCTTT
Found at i:797464 original size:33 final size:33
Alignment explanation
Indices: 797361--797810 Score: 568
Period size: 33 Copynumber: 13.5 Consensus size: 33
797351 AGTGGCAATC
* * *
797361 TCTTCTCAAAGCCCACGACTCAGTGGCA--TTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
* *
797392 T-GTCTCAAAGTCCC-CCACTCCGTGGCACCTTTT
1 TCTTTTCAAAG-CCCACCACTCCGTGGCACC-TTT
*
797425 TCTTTTCAAAGCCCACAACTCCGTGGCACCTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
* *
797458 TCTTTTCAAATCCCACAACTCCGTGGCACCTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
*
797491 TCTTTTTAAAGCCCACCACTCCGTGGCACCTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
*
797524 TCTTTTCAAAACCCACCACTCCGTGGCACCTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
797557 TCCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
1 T-CTTTTCAAAGCCCACCACTCCGTGGCACC-TTT
797592 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACC-TTT
* *
797626 TCTTTTCAAAGCCCACCACTCCATGGCACTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
* * *
797659 TCTTTTTAAAGCCCACAACTCCGTGACACCTTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACC-TTT
*
797693 TCTTTTCAAAGCCCACCACTCTGTGGCACCTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
* * ** *
797726 TCTTTTTAAAACCCATAACTCCGTGGCTCCTTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
* *
797759 TCTTTTTCAAGGCCCACAACTCCGTGGCACTCCTTT
1 TC-TTTTCAAAGCCCACCACTCCGTGGCA--CCTTT
797795 TCCTTTT-AAAGCCCAC
1 T-CTTTTCAAAGCCCAC
797811 ACGAGTTGGT
Statistics
Matches: 370, Mismatches: 36, Indels: 22
0.86 0.08 0.05
Matches are distributed among these distances:
30 19 0.05
31 4 0.01
33 164 0.44
34 160 0.43
35 12 0.03
36 10 0.03
37 1 0.00
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.33
Consensus pattern (33 bp):
TCTTTTCAAAGCCCACCACTCCGTGGCACCTTT
Found at i:797491 original size:67 final size:67
Alignment explanation
Indices: 797361--797811 Score: 583
Period size: 67 Copynumber: 6.7 Consensus size: 67
797351 AGTGGCAATC
* * * * * *
797361 TCTTCTCAAAGCCCACGACTCAGTGGCA--TTTT-GTCTCAAAGTCCC-CCACTCCGTGGCACCT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAG-CCCACAACTCCGTGGCACCT
797422 TTT
65 TTT
* *
797425 TCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTCAAATCCCACAACTCCGTGGCACC-T
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTT
797489 TT
66 TT
* * *
797491 TCTTTTTAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAACCCACCACTCCGTGGCACCTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTT
797556 TT
66 TT
* *
797558 CCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACC-TTTTCTTTTCAAAGCCCACAACTCCGTGGCACCT
797623 TTT
65 TTT
* * * *
797626 TCTTTTCAAAGCCCACCACTCCATGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGACACCTT
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTT
797691 TT
66 TT
* * * * *
797693 TCTTTTCAAAGCCCACCACTCTGTGGCACCTTTTCTTTTTAAAACCCATAACTCCGTGGCTCC-T
1 TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTT
797757 TT
66 TT
* *
797759 TCTTTTTCAAGGCCCACAACTCCGTGGCACTCCTTTTCCTTTT-AAAGCCCACA
1 TC-TTTTCAAAGCCCACCACTCCGTGGCA--CCTTTT-CTTTTCAAAGCCCACA
797812 CGAGTTGGTG
Statistics
Matches: 345, Mismatches: 32, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
64 25 0.07
66 74 0.21
67 164 0.48
68 63 0.18
69 14 0.04
70 5 0.01
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.33
Consensus pattern (67 bp):
TCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTT
TT
Found at i:797840 original size:33 final size:33
Alignment explanation
Indices: 797801--797865 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
797791 CTTTTCCTTT
*
797801 TAAAGCCCACACGAGTTGGTGGCAACCATTCTC
1 TAAAGCCCACACAAGTTGGTGGCAACCATTCTC
*
797834 TAAAGCCCACACAAGTTGGTGGCAACCCTTCT
1 TAAAGCCCACACAAGTTGGTGGCAACCATTCT
797866 AAGCCCAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.22
Consensus pattern (33 bp):
TAAAGCCCACACAAGTTGGTGGCAACCATTCTC
Found at i:797972 original size:43 final size:43
Alignment explanation
Indices: 797860--798277 Score: 449
Period size: 43 Copynumber: 9.1 Consensus size: 43
797850 TGGTGGCAAC
* *
797860 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---CA
* *
797907 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
797953 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
797996 CCTTCCATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA
1 -----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
798046 CCTTTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
798089 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
798138 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
798181 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
798224 CCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCG
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
798273 CCTTT
1 CCTTT
798278 GTCATCTTTT
Statistics
Matches: 321, Mismatches: 28, Indels: 47
0.81 0.07 0.12
Matches are distributed among these distances:
43 162 0.50
45 4 0.01
46 2 0.01
47 1 0.00
48 2 0.01
49 109 0.34
50 41 0.13
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:798163 original size:22 final size:22
Alignment explanation
Indices: 798138--798206 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
798128 CACATTGGCA
798138 CCTTTAAGTCCAATATAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
* ** *
798160 CCTTGAA-T-CAGCATA-TTGG
1 CCTTTAAGTCCAATATAGCTGG
*
798179 CATCTTTAAGTCCAATGTAGCTGG
1 C--CTTTAAGTCCAATATAGCTGG
798203 CCTT
1 CCTT
798207 GAATCAGCAC
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 5 0.15
21 6 0.18
22 10 0.30
23 4 0.12
24 4 0.12
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (22 bp):
CCTTTAAGTCCAATATAGCTGG
Found at i:798163 original size:92 final size:92
Alignment explanation
Indices: 797860--798329 Score: 673
Period size: 92 Copynumber: 5.0 Consensus size: 92
797850 TGGTGGCAAC
* * *
797860 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
797925 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
*
797953 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATTGGCACCTTCCATCTTTAAGTCCAATG
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-CATCTTTAAGTCCAATG
*
798018 TAGCTAGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* *
798046 CCTTTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
798111 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
798138 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG------CATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
798197 AGCTGGCCTTGAATCAGCACATTAGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* *
798224 CCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC-TTTA
* * *
798289 AGTCCAATGTCGCTGGCCTTGATTCAACACATTGGCA
56 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
798326 CCTT
1 CCTT
798330 CATCTTCAAC
Statistics
Matches: 343, Mismatches: 17, Indels: 31
0.88 0.04 0.08
Matches are distributed among these distances:
86 43 0.13
90 1 0.00
92 161 0.47
93 93 0.27
96 3 0.01
98 1 0.00
101 4 0.01
102 37 0.11
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:798306 original size:53 final size:51
Alignment explanation
Indices: 798179--798329 Score: 198
Period size: 49 Copynumber: 3.0 Consensus size: 51
798169 AGCATATTGG
*
798179 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACC--TT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTT
* * * *
798228 CATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTT-T
* * *
798280 CATCTTTTAAGTCCAATGTCGCTGGCCTTGATTCAACACATTGGCACCTT
1 CATC-TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
798330 CATCTTCAAC
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
49 42 0.48
51 1 0.01
52 5 0.06
53 39 0.45
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (51 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTT
Found at i:799192 original size:13 final size:13
Alignment explanation
Indices: 799174--799198 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
799164 CATAAAGTGT
799174 TGTATCGATACAA
1 TGTATCGATACAA
799187 TGTATCGATACA
1 TGTATCGATACA
799199 TAAGTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:799217 original size:32 final size:33
Alignment explanation
Indices: 799154--799219 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
799144 TTCAACGATT
799154 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
* *
799187 TGTATCGATACAT-AAGTTTTTTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
799219 T
1 T
799220 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:799278 original size:13 final size:13
Alignment explanation
Indices: 799260--799284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
799250 ATTACTCAAA
799260 TGTATCGATACAT
1 TGTATCGATACAT
799273 TGTATCGATACA
1 TGTATCGATACA
799285 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:799337 original size:52 final size:52
Alignment explanation
Indices: 799293--799421 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
799283 CACTGATCTT
* *
799293 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAA
*
799345 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAA
799397 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
799422 TCATATTTGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAA
Found at i:804186 original size:28 final size:28
Alignment explanation
Indices: 804152--804227 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
804142 TCATCCAATA
*
804152 ATCACCTTGAATGAAAATGTGTATAAAT
1 ATCACCTTGAATGAAAAGGTGTATAAAT
804180 ATCACCTTGAATGAAAAGGTGTATAAAT
1 ATCACCTTGAATGAAAAGGTGTATAAAT
* **
804208 ATCATCTTTTATGAAAAGGT
1 ATCACCTTGAATGAAAAGGT
804228 ATCTTTGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (28 bp):
ATCACCTTGAATGAAAAGGTGTATAAAT
Found at i:804277 original size:21 final size:21
Alignment explanation
Indices: 804231--804279 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
804221 AAAAGGTATC
804231 TTTGGATGAAATGATGCATTG
1 TTTGGATGAAATGATGCATTG
* * *
804252 GTTGGATGAGA-GAATGCATTT
1 TTTGGATGAAATG-ATGCATTG
804273 TTTGGAT
1 TTTGGAT
804280 TAAAAATGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.27, C:0.04, G:0.31, T:0.39
Consensus pattern (21 bp):
TTTGGATGAAATGATGCATTG
Found at i:807692 original size:21 final size:21
Alignment explanation
Indices: 807649--807692 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
807639 GATGCATTGA
* * **
807649 TTGGATGAAAGAATTTATTTT
1 TTGGATGAAAAAATGTAACTT
807670 TTGGATGAAAAAATGTAACTT
1 TTGGATGAAAAAATGTAACTT
807691 TT
1 TT
807693 AATAATTAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.43
Consensus pattern (21 bp):
TTGGATGAAAAAATGTAACTT
Found at i:807786 original size:27 final size:27
Alignment explanation
Indices: 807748--807804 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
807738 TGCCTTTTGG
807748 TAACCTATAAATACAAATCTCTATTGC
1 TAACCTATAAATACAAATCTCTATTGC
*
807775 TAACCTATAAATACGAATCTCTATTGC
1 TAACCTATAAATACAAATCTCTATTGC
807802 TAA
1 TAA
807805 AATTTTCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.33
Consensus pattern (27 bp):
TAACCTATAAATACAAATCTCTATTGC
Found at i:809857 original size:15 final size:16
Alignment explanation
Indices: 809837--809868 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
809827 TATTTATAAA
809837 AAATTAATAAAT-TAT
1 AAATTAATAAATATAT
809852 AAATTAATAAATATAT
1 AAATTAATAAATATAT
809868 A
1 A
809869 TTTTATACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTAATAAATATAT
Found at i:810239 original size:19 final size:19
Alignment explanation
Indices: 810211--810252 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
810201 TTTAACCTGA
810211 TTTT-AATTTT-AATATTAT
1 TTTTCAATTTTCAAT-TTAT
*
810229 TTTTCAATTTTCAATTTCT
1 TTTTCAATTTTCAATTTAT
810248 TTTTC
1 TTTTC
810253 TGTGTGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 14 0.67
20 3 0.14
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTCAATTTTCAATTTAT
Found at i:810326 original size:43 final size:43
Alignment explanation
Indices: 810236--810323 Score: 135
Period size: 41 Copynumber: 2.1 Consensus size: 43
810226 TATTTTTCAA
* *
810236 TTTTCAATTTCTTTTTCTGTGTGTTTTGCCATGCTTTTCTGAT
1 TTTTCAAATTCTTTTTCTATGTGTTTTGCCATGCTTTTCTGAT
*
810279 TTTTCAAATT-TTTTTC-ATGTGTTTTGCCATGCTTTTTTGAT
1 TTTTCAAATTCTTTTTCTATGTGTTTTGCCATGCTTTTCTGAT
810320 TTTT
1 TTTT
810324 TTCTATTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
41 27 0.64
42 6 0.14
43 9 0.21
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.62
Consensus pattern (43 bp):
TTTTCAAATTCTTTTTCTATGTGTTTTGCCATGCTTTTCTGAT
Found at i:810663 original size:17 final size:18
Alignment explanation
Indices: 810641--810674 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
810631 AAATTATATC
810641 AATAAT-TTACATTTTTA
1 AATAATGTTACATTTTTA
*
810658 AATAATGTTATATTTTT
1 AATAATGTTACATTTTT
810675 TTGTTAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
AATAATGTTACATTTTTA
Found at i:811655 original size:33 final size:33
Alignment explanation
Indices: 811590--811656 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
811580 AGTTATCTAC
* *
811590 TTTAAAAAAATTATATATTTTTTATATTTATTT
1 TTTAAAAAAATTATATATTTTTGATATATATTT
811623 TTTAAAATACAATT-TATATTTTTGA-ATATATTT
1 TTTAAAA-A-AATTATATATTTTTGATATATATTT
811656 T
1 T
811657 CCCTCAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 15 0.50
34 11 0.37
35 4 0.13
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (33 bp):
TTTAAAAAAATTATATATTTTTGATATATATTT
Found at i:817457 original size:16 final size:16
Alignment explanation
Indices: 817412--817500 Score: 63
Period size: 16 Copynumber: 5.6 Consensus size: 16
817402 TCATTTTATG
* *
817412 TTCGAGTCATTTCGGA
1 TTCGGGTCATTTTGGA
* *
817428 TTCGAGTCACTTTGGA
1 TTCGGGTCATTTTGGA
*
817444 TTCGGGTCATTTTGGG
1 TTCGGGTCATTTTGGA
* * *
817460 TTCAGGTTA-TTTCGA
1 TTCGGGTCATTTTGGA
* **
817475 GTTCGGATCATTTCAGA
1 -TTCGGGTCATTTTGGA
817492 TTCGGGTCA
1 TTCGGGTCA
817501 ATCGGGGTTA
Statistics
Matches: 56, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
15 4 0.07
16 48 0.86
17 4 0.07
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.39
Consensus pattern (16 bp):
TTCGGGTCATTTTGGA
Found at i:818550 original size:32 final size:32
Alignment explanation
Indices: 818508--818593 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 32
818498 TTAATTTAAG
* *
818508 TTCGGATCATTTCGGGTTCGAATCATTTTGA-A
1 TTCGGGTCATTTCGGGTTCGAATCA-TTCGAGA
* *
818540 TTCGGGTCATTTCGGGTTTGAGTCATTCGAGA
1 TTCGGGTCATTTCGGGTTCGAATCATTCGAGA
**
818572 TTCGGGTCATTTCAAGTTCGAA
1 TTCGGGTCATTTCGGGTTCGAA
818594 CTATTTCGGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
31 4 0.09
32 41 0.91
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (32 bp):
TTCGGGTCATTTCGGGTTCGAATCATTCGAGA
Found at i:820646 original size:36 final size:34
Alignment explanation
Indices: 820587--820655 Score: 84
Period size: 36 Copynumber: 2.0 Consensus size: 34
820577 ATAAAATATT
* **
820587 AAATTATTTATATTTTTTTATAATTAAATTTAAATA
1 AAATTATTTATATTATTAAATAA-T-AATTTAAATA
*
820623 AAATTATTTTTATTATTAAATAATAATTTAAAT
1 AAATTATTTATATTATTAAATAATAATTTAAAT
820656 CGATTCATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 9 0.31
35 1 0.03
36 19 0.66
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (34 bp):
AAATTATTTATATTATTAAATAATAATTTAAATA
Found at i:821446 original size:6 final size:6
Alignment explanation
Indices: 821425--821461 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
821415 GTTTACATTC
* *
821425 AATATA TATTTA AATATA AATATA AATATA AATATA A
1 AATATA AATATA AATATA AATATA AATATA AATATA A
821462 TTTTTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (6 bp):
AATATA
Found at i:825615 original size:16 final size:16
Alignment explanation
Indices: 825591--825625 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
825581 TTGATCTATT
825591 TTTACAAATTTAAAAA
1 TTTACAAATTTAAAAA
* *
825607 TTTATAAATTTAAAGA
1 TTTACAAATTTAAAAA
825623 TTT
1 TTT
825626 GCAAGTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (16 bp):
TTTACAAATTTAAAAA
Found at i:826985 original size:22 final size:23
Alignment explanation
Indices: 826960--827015 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
826950 GTATTTAATT
826960 TTAAAAAAATTAC-TTTAACAAA
1 TTAAAAAAATTACATTTAACAAA
* **
826982 TTAAAAAAATAACATTTAAGGAA
1 TTAAAAAAATTACATTTAACAAA
827005 TTAAAAAAATT
1 TTAAAAAAATT
827016 TATCATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (23 bp):
TTAAAAAAATTACATTTAACAAA
Found at i:827013 original size:108 final size:106
Alignment explanation
Indices: 826799--827014 Score: 233
Period size: 108 Copynumber: 2.0 Consensus size: 106
826789 AATTAAATGA
826799 AAAAAGGATTTATTATTATTATTTTTTAATAAAATAAAAAATAATATTTTAATTAAGTTAAAAAA
1 AAAAAGGATTTATTATTATTATTTTTTAATAAAATAAAAAATAATATTTTAATT-A-TTAAAAAA
* * * **
826864 TTACATTAACAAATTAAAATAATTAATATATAATTTGAAAAAT
64 TTACATTAACAAATTAAAAAAATAAATATAGAATTAAAAAAAT
* * * *
826907 AAAAAGTATTTTTTTTTA-TATTTTTTAATTAAAA-AAAAAAT-ATGTATTTAATT-TTAAAAAA
1 AAAAAGGATTTATTATTATTATTTTTTAA-TAAAATAAAAAATAATAT-TTTAATTATT-AAAAA
* *
826968 ATTACTTTAACAAATTAAAAAAATAACATTTAAGGAATTAAAAAAAT
63 ATTACATTAACAAATTAAAAAAATAA-ATAT-A-GAATTAAAAAAAT
827015 TTATCATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
104 2 0.02
105 28 0.31
106 6 0.07
107 25 0.27
108 30 0.33
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (106 bp):
AAAAAGGATTTATTATTATTATTTTTTAATAAAATAAAAAATAATATTTTAATTATTAAAAAATT
ACATTAACAAATTAAAAAAATAAATATAGAATTAAAAAAAT
Found at i:827351 original size:15 final size:15
Alignment explanation
Indices: 827322--827350 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
827312 AATAAAAATC
827322 TTTTTTAATTTAAAA
1 TTTTTTAATTTAAAA
827337 TTTTTT-ATTTAAAA
1 TTTTTTAATTTAAAA
827351 ACATATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTTTAATTTAAAA
Found at i:827669 original size:120 final size:119
Alignment explanation
Indices: 827323--827670 Score: 369
Period size: 120 Copynumber: 2.9 Consensus size: 119
827313 ATAAAAATCT
* *
827323 TTTTTAATTTAAAATTTTTTATTTAAAAACATATAATTAATGTTTTAATTTGTTAATGTAAATTT
1 TTTTT-ATTT-AAATTTTTTATTTATAAA-A-ATAATTAATATTTTAATTTGTTAATGTAAATTT
*
827388 TTTAAACTTAATTAAATATTATTTTTTATTTATTAAAAATTATAATAAAAAATCCTTTTA
62 TTTAAACTTAATTAAATATTA-TTTTTATTTA-TAAAAATAATAATAAAAAATCCTTTTA
* *
827448 ----T-TTTAAATTTTTTATTTTTATAAAAATATAGTATTACATTTTAATTTGTTAATGT-AATT
1 TTTTTATTTAAATTTTTTA--TTTATAAAAATA-A-T-TAATATTTTAATTTGTTAATGTAAATT
* *
827507 TTTTAAACCTT-ATTAAATATTATTTTTAATTTTATTAAAATAATAATAATAAA-CCTTTTTTA
61 TTTTAAA-CTTAATTAAATATTATTTTT-A-TTTATAAAAATAATAATAAAAAATCC--TTTTA
* *
827569 TTTTTATTTAAATTTTTTATTT-TAAAAATAATTAATATTTTAATTTATTAATATAAATTTTTTT
1 TTTTTATTTAAATTTTTTATTTATAAAAATAATTAATATTTTAATTTGTTAATGTAAA-TTTTTT
*
827633 AAAGTTAATTAAATATTATTTTTA--T-TAAAAATAATAAT
65 AAACTTAATTAAATATTATTTTTATTTATAAAAATAATAAT
827671 TAATGTATTA
Statistics
Matches: 192, Mismatches: 13, Indels: 44
0.77 0.05 0.18
Matches are distributed among these distances:
117 12 0.06
118 14 0.07
119 12 0.06
120 65 0.34
121 38 0.20
122 26 0.14
123 8 0.04
124 3 0.02
125 1 0.01
126 13 0.07
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (119 bp):
TTTTTATTTAAATTTTTTATTTATAAAAATAATTAATATTTTAATTTGTTAATGTAAATTTTTTA
AACTTAATTAAATATTATTTTTATTTATAAAAATAATAATAAAAAATCCTTTTA
Found at i:827683 original size:33 final size:32
Alignment explanation
Indices: 827637--827754 Score: 105
Period size: 33 Copynumber: 3.6 Consensus size: 32
827627 TTTTTTAAAG
*
827637 TTAATTAAATATTATTTTTATTAAAAATAATAA
1 TTAATT-ATTATTATTTTTATTAAAAATAATAA
** **
827670 TTAATGTATTATTATTTTTA--AAATTTTTTAAA
1 TTAAT-TATTATTATTTTTATTAAAAATAAT-AA
*
827702 TTTAATTAAATATTATTTTTATTAAAAATAATAA
1 -TTAATT-ATTATTATTTTTATTAAAAATAATAA
*
827736 TTAATACATTATTATTTTT
1 TTAAT-TATTATTATTTTT
827755 TAAATTTTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
31 5 0.08
32 3 0.05
33 50 0.76
34 3 0.05
35 5 0.08
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (32 bp):
TTAATTATTATTATTTTTATTAAAAATAATAA
Found at i:827713 original size:66 final size:66
Alignment explanation
Indices: 827622--827774 Score: 261
Period size: 66 Copynumber: 2.3 Consensus size: 66
827612 TTTATTAATA
* * **
827622 TAAATTTTTTTAAAGTTAATTAAATATTATTTTTATTAAAAATAATAATTAATGTATTATTATTT
1 TAAAATTTTTTAAATTTAATTAAATATTATTTTTATTAAAAATAATAATTAATACATTATTATTT
827687 T
66 T
827688 TAAAATTTTTTAAATTTAATTAAATATTATTTTTATTAAAAATAATAATTAATACATTATTATTT
1 TAAAATTTTTTAAATTTAATTAAATATTATTTTTATTAAAAATAATAATTAATACATTATTATTT
827753 T
66 T
*
827754 TTAAATTTTTTAAATTTAATT
1 TAAAATTTTTTAAATTTAATT
827775 CATTTATAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 82 1.00
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (66 bp):
TAAAATTTTTTAAATTTAATTAAATATTATTTTTATTAAAAATAATAATTAATACATTATTATTT
T
Found at i:827773 original size:33 final size:33
Alignment explanation
Indices: 827677--827778 Score: 93
Period size: 33 Copynumber: 3.1 Consensus size: 33
827667 TAATTAATGT
*
827677 ATTATTATTTTTAAAATTTTTTAAATTTAATTA-
1 ATTATTATTTTTTAAATTTTTTAAATTTAA-TAC
* ** **
827710 AATATTATTTTTATTAAAAATAAT-AA-TTAATAC
1 ATTATTA-TTTT-TTAAATTTTTTAAATTTAATAC
*
827743 ATTATTATTTTTTAAATTTTTTAAATTTAATTC
1 ATTATTATTTTTTAAATTTTTTAAATTTAATAC
827776 ATT
1 ATT
827779 TATAAAAAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
31 7 0.13
32 8 0.15
33 25 0.48
34 6 0.12
35 6 0.12
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (33 bp):
ATTATTATTTTTTAAATTTTTTAAATTTAATAC
Found at i:828223 original size:11 final size:11
Alignment explanation
Indices: 828207--828243 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
828197 TTATTACTTT
828207 TTATTTATAAA
1 TTATTTATAAA
* *
828218 TTATTTTTAAT
1 TTATTTATAAA
828229 TTATTTATAAA
1 TTATTTATAAA
828240 TTAT
1 TTAT
828244 ACAAATTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTATTTATAAA
Found at i:834156 original size:20 final size:20
Alignment explanation
Indices: 834131--834266 Score: 69
Period size: 20 Copynumber: 6.7 Consensus size: 20
834121 AAAAGACATA
**
834131 ATGTATCGATACATTCATTC
1 ATGTATCGATACATTCAAAC
* * *
834151 ATGTATCGATAAATTGAAAG
1 ATGTATCGATACATTCAAAC
***
834171 ATGTATCGATACATCTGGGTA-
1 ATGTATCGATACAT-T-CAAAC
** *
834192 ATGTATCGATACATTGGAAG
1 ATGTATCGATACATTCAAAC
* ***
834212 ATGTATCGATACGTCTGGGTA-
1 ATGTATCGATACAT-T-CAAAC
* *
834233 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTCAAAC
834253 ATGTATCGATACAT
1 ATGTATCGATACAT
834267 CTGGGTAAAA
Statistics
Matches: 96, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
19 5 0.05
20 57 0.59
21 29 0.30
22 5 0.05
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTCAAAC
Found at i:834197 original size:21 final size:21
Alignment explanation
Indices: 834171--834274 Score: 133
Period size: 21 Copynumber: 5.0 Consensus size: 21
834161 AAATTGAAAG
834171 ATGTATCGATACATCTGGGTA
1 ATGTATCGATACATCTGGGTA
*
834192 ATGTATCGATACAT-T-GGAA
1 ATGTATCGATACATCTGGGTA
*
834211 GATGTATCGATACGTCTGGGTA
1 -ATGTATCGATACATCTGGGTA
***
834233 ATGTATCGATACAT-TGAAAA
1 ATGTATCGATACATCTGGGTA
834253 ATGTATCGATACATCTGGGTA
1 ATGTATCGATACATCTGGGTA
834274 A
1 A
834275 AAATGTGATT
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
19 3 0.04
20 31 0.45
21 32 0.46
22 3 0.04
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (21 bp):
ATGTATCGATACATCTGGGTA
Found at i:834213 original size:41 final size:41
Alignment explanation
Indices: 834151--834274 Score: 212
Period size: 41 Copynumber: 3.0 Consensus size: 41
834141 ACATTCATTC
*
834151 ATGTATCGATAAATTGAAAGATGTATCGATACATCTGGGTA
1 ATGTATCGATACATTGAAAGATGTATCGATACATCTGGGTA
* *
834192 ATGTATCGATACATTGGAAGATGTATCGATACGTCTGGGTA
1 ATGTATCGATACATTGAAAGATGTATCGATACATCTGGGTA
*
834233 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTA
1 ATGTATCGATACATTGAAAGATGTATCGATACATCTGGGTA
834274 A
1 A
834275 AAATGTGATT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (41 bp):
ATGTATCGATACATTGAAAGATGTATCGATACATCTGGGTA
Found at i:835125 original size:28 final size:28
Alignment explanation
Indices: 835039--835557 Score: 573
Period size: 28 Copynumber: 18.3 Consensus size: 28
835029 CACCAACTTG
* * *
835039 TGTGGGCTTTAGAAAAAGTTACCACCGACT
1 TGTGGGCTTT-G-AAAAGATGCCACTGACT
**
835069 TGTGTAGGCTTT-AAAAGGATGCCGTTGACT
1 TGTG--GGCTTTGAAAA-GATGCCACTGACT
* * *
835099 TGTGGGCTTTGAGAATGA-GCCTCTGACC
1 TGTGGGCTTTGA-AAAGATGCCACTGACT
* * *
835127 TGTGGCCTTTGAGAAAG-TGCCACTAATT
1 TGTGGGCTTTGA-AAAGATGCCACTGACT
835155 TGTGGGCTTTGAAAATG-TGCCACTGACT
1 TGTGGGCTTTGAAAA-GATGCCACTGACT
*
835183 TGTGGGCTATGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* *
835211 TGTGGACTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* *
835239 TGTGAG-TTGTGAAAAGGTGCCACTGACT
1 TGTGGGCTT-TGAAAAGATGCCACTGACT
* *
835267 TGTGGGCTTTGAAAA-AGTGCTACTAACT
1 TGTGGGCTTTGAAAAGA-TGCCACTGACT
*
835295 TGTGGGCTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
835323 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* **
835351 TATGGGCTTTGAAAAGAAACCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* *
835379 TGTGGGCTTTGAAAAGATGCTATTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* * * *
835407 TATTGGCTTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAAGATGCCACTGACT
835436 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
*
835464 TGTGGGTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
** * *
835492 TGTTAGCTTTTGAAAGGAAGCCACTGACT
1 TGTGGGC-TTTGAAAAGATGCCACTGACT
*
835521 TGTGGGCTTTGAAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAA-GATGCCACTGACT
835550 TGTGGGCT
1 TGTGGGCT
835558 ATTGTCGTAA
Statistics
Matches: 413, Mismatches: 61, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
27 6 0.01
28 308 0.75
29 75 0.18
30 18 0.04
32 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGATGCCACTGACT
Found at i:838671 original size:32 final size:32
Alignment explanation
Indices: 838630--838690 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
838620 CCCGAAATAT
838630 GAAAATTTGCCTGCATGTATCGATACATTGGG
1 GAAAATTTGCCTGCATGTATCGATACATTGGG
838662 GAAAATTTGCCTGCATGTATCGATACATT
1 GAAAATTTGCCTGCATGTATCGATACATT
838691 TTATAATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (32 bp):
GAAAATTTGCCTGCATGTATCGATACATTGGG
Found at i:838753 original size:52 final size:52
Alignment explanation
Indices: 838644--838760 Score: 157
Period size: 52 Copynumber: 2.2 Consensus size: 52
838634 ATTTGCCTGC
***
838644 ATGTATCGATACATTGGGGAAAATTTGCCTGCATGTATCGATACATTTTATA
1 ATGTATCGATACATTGGGGAAAATTTGCCTGCATGTATCGATACATAAGATA
*
838696 ATGTATCGATACATCT-GGGTAAATTTGCCTGCATGTATCGATACA-AAGATCA
1 ATGTATCGATACAT-TGGGGAAAATTTGCCTGCATGTATCGATACATAAGAT-A
*
838748 GTGTATCGATACA
1 ATGTATCGATACA
838761 ATGTATCGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.03
52 55 0.95
53 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (52 bp):
ATGTATCGATACATTGGGGAAAATTTGCCTGCATGTATCGATACATAAGATA
Found at i:838767 original size:13 final size:13
Alignment explanation
Indices: 838749--838773 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
838739 CAAAGATCAG
838749 TGTATCGATACAA
1 TGTATCGATACAA
838762 TGTATCGATACA
1 TGTATCGATACA
838774 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:838851 original size:33 final size:33
Alignment explanation
Indices: 838814--838880 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
838804 AGTAGCTTAA
838814 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
838847 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
838880 A
1 A
838881 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:838854 original size:13 final size:13
Alignment explanation
Indices: 838836--838860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
838826 CAAAAAAATA
838836 TGTATCGATACAT
1 TGTATCGATACAT
838849 TGTATCGATACA
1 TGTATCGATACA
838861 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:839688 original size:48 final size:48
Alignment explanation
Indices: 839624--839961 Score: 363
Period size: 48 Copynumber: 6.9 Consensus size: 48
839614 GTTAGACTTG
* * * * * *
839624 AAGGTGACAATGTGCTGATTCAAGGCCGGTGACACTGGTCTTAAAGAC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAC
* * * **
839672 AAGGTGCAAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAC
* * * * *
839720 GAGGTACCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-C
* * *
839769 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGGTGCC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA---GAC
* * * *
839820 AAAGGCGCCAATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-C
* *
839870 AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAC
* * *
839917 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA
839962 AGAAGACGCC
Statistics
Matches: 242, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
47 2 0.01
48 155 0.64
49 42 0.17
52 43 0.18
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (48 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAC
Found at i:839888 original size:149 final size:148
Alignment explanation
Indices: 839680--839961 Score: 474
Period size: 149 Copynumber: 1.9 Consensus size: 148
839670 ACAAGGTGCA
* * * *
839680 AATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAGGTACCAATGTGCTGATTCAAGG
1 AATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTACCAATGTGCTGATTCAAGG
*
839745 CCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACT
66 CCAGCTACATTGGACTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACT
839810 TAAAGGTGCCAAAGGCGCC
130 TAAAGGTGCCAAAGGCGCC
*
839829 AATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCCAATGTGCTGATTCAAGG
1 AATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTACCAATGTGCTGATTCAAGG
* * *
839894 CCAGCTACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
66 CCAGCTACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTT
839959 AAA
131 AAA
839962 AGAAGACGCC
Statistics
Matches: 124, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
148 42 0.34
149 82 0.66
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (148 bp):
AATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTACCAATGTGCTGATTCAAGG
CCAGCTACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTT
AAAGGTGCCAAAGGCGCC
Done.