genome.fa.s1380.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1380
Parameters: 2 7 7 80 10 50 1000
Length:  15224

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2492--2710	33	6.8	32	76	13	189	22	32	11	32	1.90
2458--2710	66	3.9	65	80	11	247	22	32	11	33	1.90
2553--2644	28	3.1	28	81	12	96	21	32	13	32	1.92
2611--2729	35	3.5	35	75	15	124	22	38	10	27	1.88
2553--2760	61	3.2	63	79	13	201	23	35	12	28	1.92
2717--2869	33	4.8	31	88	6	227	30	30	18	20	1.97
2716--2869	63	2.4	64	89	2	240	29	31	18	20	1.96
2874--3240	43	8.1	43	79	11	394	25	25	18	29	1.98
2875--3284	92	4.4	92	92	2	651	25	25	18	30	1.98
3194--3316	52	2.3	55	83	5	162	26	24	13	36	1.92
3363--3853	49	10.2	49	78	11	498	24	25	17	31	1.97
3467--3844	43	8.1	43	76	14	256	25	25	18	30	1.98
3418--3853	92	4.6	92	83	8	491	25	25	17	31	1.97
3695--3844	52	2.9	52	92	0	255	22	25	18	34	1.96
4706--4795	13	5.9	13	71	28	63	36	13	16	33	1.88
4685--4750	20	3.7	20	71	26	74	34	10	18	36	1.85
4719--4814	19	5.6	19	69	28	81	35	12	16	35	1.87
4686--4816	32	4.0	33	95	1	221	35	11	16	35	1.85
4686--4816	65	2.0	65	92	2	219	35	11	16	35	1.85
4708--4847	65	2.2	65	82	7	160	38	14	14	32	1.86
4857--4881	13	1.9	13	100	0	50	40	16	8	36	1.77
4738--5053	151	2.1	152	98	0	607	37	15	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4890--4946	13	3.9	13	76	24	60	36	14	15	33	1.88
4903--4965	19	3.6	19	74	24	75	34	12	15	36	1.86
4889--4967	32	2.5	32	97	0	149	35	12	15	36	1.85
5009--5033	13	1.9	13	100	0	50	40	16	8	36	1.77
5024--5170	52	2.8	50	86	6	195	35	18	14	31	1.91
7270--7323	27	2.1	26	86	10	76	24	38	16	20	1.92
8478--8517	19	2.2	19	86	4	55	45	0	2	52	1.14
8478--8529	18	2.8	19	80	13	56	38	0	5	55	1.24
8872--8907	16	2.1	18	90	10	58	63	0	5	30	1.17
12814--12866	6	8.8	6	93	0	79	49	5	0	45	1.26
12814--12866	8	6.6	8	93	0	79	49	5	0	45	1.26
12814--12866	14	3.8	14	94	0	79	49	5	0	45	1.26

Tables:   1

The End!