Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1386
Parameters: 2 7 7 80 10 50 1000
Length:  85536

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
849--887
18
2.1
19
85
4
53
12
7
7
71
1.29
10604--10675
11
6.1
11
77
19
74
81
11
5
1
0.90
10606--10656
17
2.9
17
88
11
77
86
9
3
0
0.70
11895--12784
57
15.5
57
89
5
1271
28
31
16
23
1.96
11895--12790
86
10.4
86
91
4
1303
28
31
16
23
1.96
11895--12784
143
6.2
142
92
3
1367
28
31
16
23
1.96
13347--13421
20
3.8
20
78
0
87
33
13
13
40
1.83
13347--13424
40
2.0
39
87
2
111
33
12
14
39
1.84
17636--17687
26
2.0
26
84
0
68
32
1
3
61
1.25
18626--18662
17
2.2
17
90
0
56
27
0
0
72
0.84
19130--19166
17
2.2
17
90
0
56
27
0
0
72
0.84
19225--19276
26
2.0
25
85
3
68
36
1
1
59
1.19
20378--20453
15
4.9
15
72
15
57
40
2
2
53
1.28
20423--20451
15
1.9
15
100
0
58
34
0
0
65
0.93
20426--20469
23
2.0
23
90
4
72
31
0
0
68
0.90
21623--21660
2
20.0
2
89
10
62
50
0
0
50
1.00
21756--21794
13
2.8
13
92
7
60
41
0
7
51
1.31
22844--22968
15
8.5
15
67
21
52
40
1
0
57
1.14
23114--23265
65
2.3
65
98
0
295
40
4
11
42
1.62
24603--24699
12
8.5
12
71
16
55
50
0
0
49
1.00
24658--24700
22
2.0
22
85
0
59
55
0
0
44
0.99
26512--26560
22
2.2
22
82
7
64
51
2
24
22
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29599--29636
3
13.0
3
83
5
51
63
0
0
36
0.95
29835--29871
16
2.3
17
86
13
60
37
0
0
62
0.96
30541--30586
20
2.3
20
88
0
65
34
4
50
10
1.57
30623--30707
27
3.2
25
73
14
73
50
18
5
24
1.69
32587--32632
21
2.1
22
84
4
58
19
30
19
30
1.97
37417--37441
11
2.3
11
100
0
50
0
8
0
92
0.40
38816--38919
40
2.6
41
83
7
124
45
0
1
52
1.11
38907--38958
14
3.6
14
77
12
52
34
0
0
65
0.93
40131--40172
18
2.3
19
87
4
59
45
0
7
47
1.30
40456--40485
3
10.0
3
100
0
60
66
0
0
33
0.92
40699--40742
16
2.8
16
85
0
52
50
0
0
50
1.00
43328--43373
7
6.3
7
82
9
56
39
0
0
60
0.97
43332--43384
14
3.6
15
78
16
58
39
0
0
60
0.97
45053--45106
16
3.4
16
82
10
74
33
0
3
62
1.12
46658--46694
18
2.1
18
100
0
74
27
5
0
67
1.12
49640--49750
36
3.1
35
84
6
143
50
9
6
34
1.59
51817--51901
31
2.7
31
80
5
91
34
4
7
54
1.49
51812--51904
16
5.9
16
76
2
89
35
4
6
53
1.46
52341--52390
7
6.9
7
77
8
55
32
0
2
66
1.03
52332--52379
23
2.1
23
100
0
96
39
0
0
60
0.97
52885--52991
56
1.9
56
96
0
196
45
3
12
38
1.59
56114--56144
16
2.0
15
93
6
53
19
0
3
77
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57505--57558
5
10.8
5
89
0
72
51
7
20
20
1.70
57505--57558
10
5.4
10
90
0
81
51
7
20
20
1.70
57497--57558
15
4.2
15
89
2
90
51
8
20
19
1.72
57566--57592
14
1.9
14
100
0
54
44
7
25
22
1.79
57622--57656
15
2.3
16
90
9
56
62
5
14
17
1.49
60380--60443
21
3.1
21
62
8
51
32
6
10
50
1.63
65785--65816
17
1.9
17
93
6
57
31
6
12
50
1.65
65985--66029
18
2.5
18
96
0
81
53
0
0
46
1.00
66593--66629
19
1.9
20
94
5
67
29
13
0
56
1.37
67410--67547
68
2.0
68
94
0
240
39
15
24
19
1.91
67607--67642
18
2.0
18
89
10
56
19
13
0
66
1.24
67896--67938
17
2.4
18
92
3
70
48
0
4
46
1.22
68421--68465
16
2.8
16
83
9
56
40
4
2
53
1.33
72331--72390
29
2.1
29
82
14
72
50
1
0
48
1.11
73063--73105
15
2.8
15
86
10
52
46
0
4
48
1.22
73102--73150
21
2.3
21
85
0
62
57
0
2
40
1.10
73308--73389
31
2.7
31
85
9
98
30
0
3
65
1.09
73362--73424
30
2.2
27
86
13
83
41
1
0
57
1.08
73378--73424
15
3.1
16
74
20
55
42
2
0
55
1.12
73422--73489
32
2.2
31
84
5
91
60
0
1
38
1.06
73430--73536
22
4.8
22
72
10
65
54
0
0
45
0.99
73505--73538
17
2.1
16
88
5
50
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74294--74384
26
3.4
25
69
16
67
45
3
2
49
1.30
75333--75381
22
2.2
22
82
7
64
51
2
24
22
1.59

Tables:   1

The End!