Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1389
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13582
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Found at i:2538 original size:476 final size:476
Alignment explanation
Indices: 4--11689 Score: 20181
Period size: 476 Copynumber: 24.6 Consensus size: 476
1 ATT
* * * * ** * * * *
4 AATGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACGTGAAGCACGAACTTGGACTTTAACAAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTT-ACAGAA
*
69 ATTGGAGTGAAGAAATCCATTCTTGCAAATCCAAAGCATC-ATTTCGTCTATCCTAATGAGTTGA
65 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
*
133 CTATGTTGATAGTGCCTAATCCT-AAAAGATTAGGGATTA-TATAACTATTCATGTTTGTC-TA-
130 CTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
194 TTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGTGACACCAAAG
195 TTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
* *
259 CAT-AAAATCA-TTATCC-AATAAAGGGA-TGGGTTTCTTAGTTCC-AATCTTGAAAA-AGATGG
260 CATCAATATCATTTATCCTAATGAAGGGATTGGG-TTCTTAGTTCCAAATCTTGAAAAGA-ATGG
* * *
318 AAACAGTT-CGAGAATCGATAATT-TCATAATTCAGGGATGAATTTGTATTTTAAAGAAAAATAG
323 AGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTT-AAGGAAAATAG
* * *
381 GGTTAAGAAATGATTTCCATGC-AAACAAAATCATCAATATCATTTATCCTACTGAAAAGAATTT
387 GGTAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGT
445 GTTTTATAGTGCGTAATCACAAAA-G
452 G-TTTATAGTGCGTAATCACAAAATG
* *
470 AATGCAGATCATTACTAG-ATCCTTTTTTGTCTCATTTGGGGCACAAACGTTAGAC-TTACAGAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAAC-TTAGACTTTACAGAA
*
533 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCAGCAATTTCGTCTATCCCTAATGAGTTG
65 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTAT-CCTAATGAGTTG
* *
598 ACTATGTTGATAGTGCCTAATCCTAAAAAGATTA-GGATTAGTATAACTATTCA-GTTTGTCTTA
129 ACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTA
* *
661 TTTAA-AGGCAAACTTTGATTCTAACAAAAACGGTAGAGAC-AAACCTTTTCCTGTGACACCAAA
194 TTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAA
* *
724 GCATAAAATATCATTTATCCTAATGAAGGGATT-GGTTCTTAGTTCCAAATCTTGATGAAAGATT
259 GCAT-CAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGA--AAAGAAT
* * *
788 GGAGACAGTTACGAGAATCGATAATTGTCAGAATTCAGGGATGAA-TTTGATTTTAAGAAAAATA
321 GGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATA
*
852 GGGTAAAGAAATGATTTCCATGCAAAACAAAATCATCAATATCATTTATCACTACTGAAAAGAAT
386 GGGTAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-CTACTGAAAAGAAT
917 GTGTTTTATAGTGCGTAATC-CAAAATG
450 GTG-TTTATAGTGCGTAATCACAAAATG
* *
944 AATGAAGATCATTACTAGAATCTTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAG-AA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
1008 GTGGAGTGAAGAAATCCA-TCTTGCGAATTCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
66 TTGGAGTGAAGAAATCCATTCTTGCGAA-TCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
* *
1072 CTATGTTGATAGAGCCTAATCCTGAAAAG-CTAGGGATTAGTATGACTATTCATG-TTGTCTTAT
130 CTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
1135 TTAAGAGGCAGACTTTGATTCTAACAAAAACGGGTAGAGAGGAAACCTTTTCTTGCGACACC-AA
195 TTAAGAGGCAAACTTTGATTCTAACAAAAAC-GGTAGAGACGAAACCTTTTCTTGCGACACCAAA
1199 GCATCAATATCATTTATCCT-AT-AAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGA
259 GCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGA
* *
1262 GACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGG
324 GACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGG
* * * *
1327 TAAAGAAACAGATTTTCATGCAAAAGAAAGTCATCAATATCATTTATCATAAC-GAAAAGAATGT
389 TAAAGAAA-TGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-ACTGAAAAGAATGT
* * *
1391 ATTTATAGTGCCTAATCACAAAATT
452 GTTTATAGTGCGTAATCACAAAATG
* * * * * * * * *
1416 AATGTAGAATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAA
1 AATGAAG-ATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAA
1481 ATTGGAGTGAAGAAATCCATT-TTGC-AATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
65 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
1544 CTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
130 CTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * *
1609 TTACGAGGCAAACTTTGATTCCTAACAAAAACGGTAGAGTAGGAAAACCTTTTTTTGCGACACCA
195 TTAAGAGGCAAACTTTGATT-CTAACAAAAACGGTAGAG-ACG-AAACCTTTTCTTGCGACACCA
*
1674 AAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGTATG
257 AAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATG
1739 GAGACTAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTT-AGGAAAATA
322 GAGAC-AGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATA
1803 GGGTAAGAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAAT
386 GGGTAA-AGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAAT
1868 GTGTTTATAGTGCGTAATCACAAAATG
450 GTGTTTATAGTGCGTAATCACAAAATG
*
1895 AATGAAGATCATTACTAGAAT-CTTTTTTGTCTCATTTGGGGCACCAAACTTAGACTTTACAGAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCA-CAAACTTAGACTTTACAGAA
1959 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTTCGTCTATCCTAATGAGTTG
65 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAA-TTTCGTCTATCCTAATGAGTTG
2024 ACTATG-TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTA
129 ACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTA
2088 TTTAAGAGGCAAACTTTGATTCTAACAAAAA-GGTAGAGACGAAACCTTTTCTTGCGACACCAAA
194 TTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAA
*
2152 GCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTCAAAAGAATGGA
259 GCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGA
2217 GACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGG
324 GACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGG
* * * * ** * *
2282 CAGAGAAATGATTTCCATGCAAAAGAAAATCGTTAATATCATTTATCGAAATGAGAAGAATGTGT
389 TAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGT
2347 TTATAGTGCGTAATCACAAAATG
454 TTATAGTGCGTAATCACAAAATG
* *
2370 AATGCAGATCATTACTAGAATCCTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAG-AA
2435 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
65 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
* *
2500 CTATGTTGATAGTGCCTAATCCTAAAAAGATTAGGGATTAGTATAACTATTCATGTTTGTCTTAT
130 CTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
2565 TTAAGAGGCAAACTTTGATTCTAAC-AAAACGGTAGAGACGAAACCTTTTCCTGTGACACCAAAG
195 TTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
* *
2629 CATAAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGATTGGAG
260 CATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAG
* * *
2694 ACAGTTACGAGGATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGT
325 ACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGT
* *
2759 AAAGAAATGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTACTGAAAAGAATTTGTT
390 AAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTT
2824 TATAGTGCGTAATCACAAAATG
455 TATAGTGCGTAATCACAAAATG
* * * * * * *
2846 AATGCAGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
2911 TTGGAGTGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
2976 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
3041 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
3106 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
3171 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
3236 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
3301 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
3322 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
3387 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
3452 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
3517 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
3582 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
3647 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
3712 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
3777 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
3798 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
3863 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
3928 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
3993 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
4058 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* *
4123 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* * * * * *
4188 AAGAAAAGATTTTCATGCAAAAGAAAGTCATTAATATCATTTATCATAAC-GAAAAGAATGTATT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-ACTGAAAAGAATGTGTT
* *
4252 TATAGTGCCTAATCACAAAATT
455 TATAGTGCGTAATCACAAAATG
* * * * * * * *
4274 AATGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
4339 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
* *
4404 TATGTTGATAGCGCCTAATCCTGAAAAGATTAGGGATTAGTACGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
4469 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
4534 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
*
4599 CAGTTACGAGAATCGATAATTGTCATAATTTAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
*
4664 AAGAAATGATTTCCATGCAAAAGAAATTCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
4729 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
4750 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
4815 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
4880 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
4945 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
5010 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
5075 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* *
5140 AAGAAATGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTACTGAAAAGAATGTTTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
5205 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
5226 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
5291 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
* *
5356 TATGTTGATAGTGCCTAATCCTAAAAAGATTAGGGATTAGTATAACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
5421 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
5486 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
5551 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
5616 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACTGAAAAGAATGTGTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-ACTGAAAAGAATGTGTT
5681 TATAGTGCGTAATCACAAAATG
455 TATAGTGCGTAATCACAAAATG
5703 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAAGGCACAAACTTAGACTTTACAGAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTG-AGGCACAAACTTAGACTTTACAGAA
5768 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
65 ATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGA
5833 CTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
130 CTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
*
5898 TTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
195 TTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
5963 CATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAG
260 CATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAG
* *
6028 ACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGT
325 ACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGT
* * * * * *
6093 AAAGAAAAGATTTTCATGCAAAAGAAAGTCATTAATATCATTTATCGTAAC-GAAAAGAATGTAT
390 AAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-ACTGAAAAGAATGTGT
* * *
6157 TTTTAGTGCCTAATCACAAAATT
454 TTATAGTGCGTAATCACAAAATG
* * * * * * * * *
6180 AATGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTCCAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
6245 TTGGAGTGAAGAAATCCATTCTTGTGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
6310 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * *
6375 TAAGAGGCAGACTTTGATTCTAACAAAAACGGTAGAGAGGAAACGTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
* * *
6440 ATCAATATCATTTATCCTAATAAAGGGAATGGGTTCTTAGTTCCAAATCTTGAGAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* ** *
6505 CAGTTACGAGCATCGATAATTGTCATAATTCAGATATGAATTTTTATTTTGAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* *
6570 AAGAAATGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCAACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
6635 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
6656 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
6721 TTGGAGTGAATAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
6786 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
6851 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTTTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
* *
6916 ATAAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGATTGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* * * *
6981 TAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAAAAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
*
7046 AAGAAATGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
7111 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
* *
7132 AATGAAGATCATTACTAGAATCTTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
7197 TTGGAGTGAAGAAATCCATTCTTACGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
* *
7262 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATATTTGTCTTATA
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
7327 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
7392 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTT-AAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
7456 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* * **
7521 AAGAAATGATTTCCATGCAAAAGAAAATCGTTAATATCATTTATCGAACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
7586 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
*
7607 AATGCAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
7672 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
7737 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
7802 TAAGAGGCAAACTTTGATTCTAACAAAATCGGTAGAGACGAAACCTTTTCCTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
*
7867 ATAAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* *
7932 CAGTTACGAGAATCGATAATTGTCATAATTCA-GGATGAATTTGTATTTTAAGAAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* * * *
7996 AAGAAAAGATTTTCATGCAAAAGAAAGTCATCAATATCATTTATCATAAC-GAAAAGAATGTGTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-ACTGAAAAGAATGTGTT
8060 TATAGTGCGTAATCACAAAATG
455 TATAGTGCGTAATCACAAAATG
* *
8082 AATGAAGATCATTACTAGAATCTTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
8147 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
* * *
8212 TATGTTGATAGTGCCTAATCCTAAAAAGATTAGGGATTAGTATAACTATTCAAGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
8277 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGTGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
* *
8342 ATAAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGATTGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* *
8407 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
8472 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
8537 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
* *
8558 AATGAAGATCATTACTAGAATCTTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
8623 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
8688 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
8753 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
*
8818 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTCAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
*
8883 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGCA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* * * ** * *
8948 GAGAAATGATTTCCATGCAAAAGAAAATCGTTAATATCATTTATCGAAATGAGAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
9013 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
* *
9034 AATGCAGATCATTACTAGAATCCTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
9099 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
* *
9164 TATGTTGATAGTGCCTAATCCTAAAAAGATTAGGGATTAGTATAACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
9229 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
*
9294 ATCAATATCATTTATCCTAAAGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
9359 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
*
9424 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTCT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
*
9489 ATGGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
* *
9510 AATGAAGATTATTACTAGAATCCTTTTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
9575 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
*
9640 TATGTTGATAGCGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
9705 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
*
9770 ATCAATATCATTTATCCTAAAGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
9835 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
*
9900 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTCT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
*
9965 ATGGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
* *
9986 AATGAAGATTATTACTAGAATCCTTTTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
10051 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
* *
10116 TATGTTGATAGCGCCTAATCTTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
10181 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTACGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
10246 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* *
10311 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* * * * * *
10376 AAGAAAAGATTTTCATGCAAAAGAAAGTCATTAATATCATTTATCGTAAC-GAAAAGAATGTATT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-ACTGAAAAGAATGTGTT
* * *
10440 TTTAGTGCCTAATCACAAAATT
455 TATAGTGCGTAATCACAAAATG
* * * * * * * * *
10462 AATGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTCCAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
10527 TTGGAGTGAAGAAATCCATTCTTGTGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
*
10592 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATAACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
10657 TAAGAGGCAGACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
*
10722 ATAAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* **
10787 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAAAAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* * * * *
10852 AAGAAAAGATTTTCATGCAAAAGAAAGTCATCAATATCATTTATCGTAAC-GAAAAGAATGTATT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-ACTGAAAAGAATGTGTT
* * *
10916 TTTAGTGCCTAATCACAAAATT
455 TATAGTGCGTAATCACAAAATG
* * * * * * * * *
10938 AATGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTCCAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
11003 TTGGAGTGAAGAAATCCATTCTTGTGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
11068 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
131 TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
11133 TAAGAGGCAGACTTTGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTGCGACACCAAAGC
196 TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
* * * *
11198 ATCAATATCATTTATCCTAATAAAGGGAATGGGTTCTTTGTTCCAAATCTTGAGAAGAATGGAGA
261 ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
* ** *
11263 CAGTTACGAGCATCGATAATTGTCATAATTCAGATATGAATTTTTATTTTGAGGAAAATAGGGTA
326 CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
* *
11328 AAGAAATGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCAACTGAAAAGAATGTGTTT
391 AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
11393 ATAGTGCGTAATCACAAAATG
456 ATAGTGCGTAATCACAAAATG
11414 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
1 AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
*
11479 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTGATGAGTTGAC
66 TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
*
11544 TATGTTGATAGTGCCTAATCCT-AAAATGATTAGGGATTAGTATAACTATTCATGTTTGTCTTAT
131 TATGTTGATAGTGCCTAATCCTGAAAA-GATTAGGGATTAGTATGACTATTCATGTTTGTCTTAT
11608 TTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
195 TTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
11673 CATCAATATCATTTATC
260 CATCAATATCATTTATC
11690 ATAACGAAAA
Statistics
Matches: 10713, Mismatches: 437, Indels: 130
0.95 0.04 0.01
Matches are distributed among these distances:
464 43 0.00
465 36 0.00
466 97 0.01
467 58 0.01
468 10 0.00
469 17 0.00
470 19 0.00
471 66 0.01
472 171 0.02
473 266 0.02
474 213 0.02
475 1338 0.12
476 7417 0.69
477 189 0.02
478 452 0.04
479 147 0.01
480 146 0.01
481 28 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (476 bp):
AATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAA
TTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGAC
TATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
TAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGC
ATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGA
CAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTA
AAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAGAATGTGTTT
ATAGTGCGTAATCACAAAATG
Found at i:11789 original size:317 final size:317
Alignment explanation
Indices: 2788--12016 Score: 1258
Period size: 317 Copynumber: 29.1 Consensus size: 317
2778 AAAACAAAAT
* * * * *
2788 CATCAATATCATTTATCCTACTGAAAAGAATTTGTTTATAGTGCGTAATCACAAAATGAATGCAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* *
2853 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
2918 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
2983 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAGAG
*
3047 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
** * ** * * **
3105 CATCAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * ** *
3167 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAATTTTTATTTTA-AGGAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAGACTTTACA--AAAA
* * * * *** * * * * * ***
3229 TAGG-GTAAAGAAAT-GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAG
124 TTGGAGTGAAGAAATCCA-TT-CTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTG
* * * * * ** * *
3292 AATGTGTTTATAGTGCGTAATCAC--AAAATGAATGAAGATCATTACTAGAA-TCCTT--T-TTT
187 ACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-TAG-GGATTAGTAGAACT-ATTCATGTTT
* * ** * * * *
3351 GTCTCATTT--GAGGCACAAACTTAGACTT-T-ACAGAAATTGG-AGTGAAGAAATCC-ATTCTT
246 GTCTTATTTAAGAGG--CAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTCCT
3410 GCGA-ATCCAAAG
306 GCGACA-CCAAAG
* * * *** * * * *
3422 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC--AAAATGAATG
* ** * * * * * *
3482 TAG-GGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACAA
63 AAGATCATTACTA-GA--ATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAA
* * * * * * * *
3543 AAA-CGGTAGAGACGAAA-CCTTTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAATGA
121 AAATTGG-AGTGAAGAAATCC-ATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAATG-
* * ** ** * * * * *
3605 AG-GGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAAT-GGAGA-CAGTTACGAGA--A-TCGAT
182 AGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GA-ACTATTC-AT
** * * * * * * * * ***
3664 AATTGTCATAATTCAG-GG-ATGAATTTTTATTTTAAGGAAAATAGGGTA-A-A-GAAATGATTT
242 GTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTAA-CAAAA-ACGGTAGAGACGAAACCTTTT
* * ** *
3724 CCATGCAAAAGAAAAT
303 CC-TGCGACACCAAAG
* * *
3740 CATCAATATCATTTATCCTACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
3805 ATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
*
3870 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
3935 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAGAG
*
3999 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
** * ** * * **
4057 CATCAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * * *
4119 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAA-TTTGTATTTTAAGAAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAG-ACTTT-ACAAAAA
* * ** * ** * * * * * * ***
4181 TAGG-GTAAAGAAA-AGATTTTCATGCAAA-AGAAAGTCATTAATATCATTTATCATAACGAAAA
124 TTGGAGTGAAGAAATCCA--TTCTTGCAAATCCAAAG-CATCAATTTCGTCTATCCTAATGAGTT
* * * * * * * *
4243 GAATGTATTTATAGTGCCTAAT-C--ACAAA-ATTA---ATGTAGATCGTTACTAGAGTCCTTGT
186 GACTATGTTGATAGTGCCTAATCCTGA-AAAGATTAGGGAT-TAG-TAG-AACT--A-TTCATGT
* * * * ** * * *
4301 TTGTCTCACTTGAAGCA--CGAACTTGGACTT-T-ACAGAAATTGG-AGTGAAGAAATCC-ATTC
244 TTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTC
*
4360 TTGCGA-ATCCAAAG
304 CTGCGACA-CCAAAG
* * * *** * * * * * *
4374 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGCGCCTAATC-CTGAAAA-G-ATT
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC--AAAATGAATG
* * * * ** * * * * *
4435 AGGGATTAGTACGACTATTCATGTTTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACAAAA
63 A-AGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAAAA
* * * * * * * *
4497 A-CGGTAGAGACGAAA-CCTTTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAATGAAG
123 ATTGG-AGTGAAGAAATCC-ATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAATG-AG
* * ** ** * * * * * **
4559 -GGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAAT-GGAGA-CAGTTACGAGA--A-TCGATAA
184 TTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GA-ACTATTC-ATGT
* * * * * * ***
4618 TTGTCATAATTT-AG-GG-ATGAATTTTTATTTTAAGGAAAATAGGGTA-A-A-GAAATGATTTC
244 TTGTC-TTATTTAAGAGGCA--AACTTTGATTCTAA-CAAAA-ACGGTAGAGACGAAACCTTTTC
* ** *
4677 CATGC-AAAAGAAATT
304 C-TGCGACACCAAA-G
* * *
4692 CATCAATATCATTTATCCTACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
4757 ATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
*
4822 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
4887 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAGAG
*
4951 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
** * ** * * **
5009 CATCAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * ** *
5071 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAATTTTTATTTTA-AGGAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAGACTTTACA--AAAA
* * * * *** * * * * * * ***
5133 TAGG-GTAAAGAAAT-GATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTACTGAAAAG
124 TTGGAGTGAAGAAATCCA-TT-CTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTG
* * * * * * ** * *
5196 AATGTTTTTATAGTGCGTAATCAC--AAAATGAATGAAGATCATTACTAGAA-TCCTT--T-TTT
187 ACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-TAG-GGATTAGTAGAACT-ATTCATGTTT
* * ** * * * *
5255 GTCTCATTT--GAGGCACAAACTTAGACTT-T-ACAGAAATTGG-AGTGAAGAAATCC-ATTCTT
246 GTCTTATTTAAGAGG--CAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTCCT
5314 GCGA-ATCCAAAG
306 GCGACA-CCAAAG
* * * *** * * * * * *
5326 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGTGCCTAATC-CTAAAAAG-ATTA
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC-AAAATGAATGA
* * * * * * * *
5388 GGGATTAGTA-TA-ACTATTCATGTTTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACAAA
64 -AGATCATTACTAGA--ATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAAA
* * * * * * * *
5448 AA-CGGTAGAGACGAAA-CCTTTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAATGAA
122 AATTGG-AGTGAAGAAATCC-ATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAATG-A
* * ** ** * * * * * *
5510 G-GGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAAT-GGAGA-CAGTTACGAGA--A-TCGATA
183 GTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GA-ACTATTC-ATG
* * * * * * * * * ***
5569 ATTGTCATAATTCAG-GG-ATGAATTTTTATTTTAAGGAAAATAGGGTA-A-A-GAAATGATTTC
243 TTTGTCTTATTTAAGAGGCA--AACTTTGATTCTAA-CAAAA-ACGGTAGAGACGAAACCTTTTC
* * ** *
5629 CATGCAAAAGAAAAT
304 C-TGCGACACCAAAG
* *
5644 CATCAATATCATTTATCCTAACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAA
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAA
* * *
5709 GATCATTACTAGAATCCTTTTTTGTCTCATTTGAAGGCACAAACTTAGACTTTACAGAAATTGGA
65 GATCATTACTAGAATCCTTGTTTGTCTCACTTGAA-GCACAAACTTAGACTTTACAAAAATTGGA
*
5774 GTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
129 GTGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
5839 TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAG
194 TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAG
5903 AGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
258 AGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
** * ** * * **
5963 CATCAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * * *
6025 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAA-TTTGTATTTTAAGAAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAG-ACTTT-ACAAAAA
* * ** * ** * * * * * * ***
6087 TAGG-GTAAAGAAA-AGATTTTCATGCAAA-AGAAAGTCATTAATATCATTTATCGTAACGAAAA
124 TTGGAGTGAAGAAATCCA--TTCTTGCAAATCCAAAG-CATCAATTTCGTCTATCCTAATGAGTT
* * * ** * * * *
6149 GAATGTATTTTTAGTGCCTAAT-C--ACAAA-ATTA---ATGTAGATCGTTACTAGAGTCCTTGT
186 GACTATGTTGATAGTGCCTAATCCTGA-AAAGATTAGGGAT-TAG-TAG-AACT--A-TTCATGT
* * * * * ** * * *
6207 TTGTCTCACTTGAAGCA--CGAACTTGGACTT-T-CCAGAAATTGG-AGTGAAGAAATCC-ATTC
244 TTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTC
* *
6266 TTGTGA-ATCCAAAG
304 CTGCGACA-CCAAAG
* * * *** * * * *
6280 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC--AAAATGAATG
* ** * * * * * * *
6340 TAG-GGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAG-AGGCAGACTTTGA-TTCTAACAA
63 AAGATCATTACTA-GA--ATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAA
* * * ** * * * * *
6401 AAA-CGGTAGAGAGGAAA-CGTTTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAATAA
121 AAATTGG-AGTGAAGAAATC-CATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAAT-G
* * ** ** * * * * * * * *
6463 AG-GGAATGGGTTCTTAGTTCCAAATCTTGAGAAGAAT-GGAGA-CAGTTACGAGC-A-TCGATA
182 AGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GAACTATTC-ATG
* * * * **** * * * ** * ***
6523 ATTGTCATAATTCAGATATGAATTTTTATTTTGAGGAAAATAGGGTA-A-A-GAAATGATTTCCA
243 TTTGTCTTATTTAAGAGGCAAACTTTGATTCT-AACAAAA-ACGGTAGAGACGAAACCTTTTCC-
* * * *
6585 TGCAAAACAAAAT
305 TGCGACACCAAAG
* *
6598 CATCAATATCATTTATCCAACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
6663 ATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
* *
6728 GAATAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
6793 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAGAG
* **
6857 GCAAACTTTGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTTTTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
* ** * ** * * ** *
6915 CATAAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GATTG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * * *
6977 GAGAT-AGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAA-TTTGTATTTTAAGAAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAG-ACTTT-ACAAAAA
** * * * * * * * * * * ***
7039 AAGG-GTAAAGAAAT-GATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTACTGAAAAG
124 TTGGAGTGAAGAAATCCA-TT-CTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTG
* * * * * ** *
7102 AATGTGTTTATAGTGCGTAATCAC--AAAATGAATGAAGATCATTACTAGAATCT-TT--T-TTT
187 ACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-TAG-GGATTAGTAGAA-CTATTCATGTTT
* * * ** * * * *
7161 GTCTCATTT--GGGGCACAAACTTAGACTT-T-ACAGAAATTGG-AGTGAAGAAATCC-ATTCTT
246 GTCTTATTTAAGAGG--CAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTCCT
*
7220 ACGA-ATCCAAAG
306 GCGACA-CCAAAG
* * * *** * * * *
7232 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC--AAAATGAATG
* ** * * * * * *
7292 TAG-GGATTAGTATGACTATTCATATTTGTCTTA-TAT-AAG-AGGCAAACTTTGA-TTCTAACA
63 AAGATCATTACTA-GA--ATCCTTGTTTGTCTCACT-TGAAGCA--CAAACTTAGACTT-T-ACA
* * * * * * * *
7352 AAAA-CGGTAGAGACGAAA-CCTTTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAATG
120 AAAATTGG-AGTGAAGAAATCC-ATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAATG
* * ** ** * * * * *
7414 AAG-GGATTGGGTTCTTAGTTCCAAAT-CTTAAAAGAAT-GGAGA-CAGTTACGAGA--A-TCGA
182 -AGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GA-ACTATTC-A
** * * * * * * * * ***
7472 TAATTGTCATAATTCAG-GG-ATGAATTTTTATTTTAAGGAAAATAGGGTA-A-A-GAAATGATT
241 TGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTAA-CAAAA-ACGGTAGAGACGAAACCTTT
* * ** *
7532 TCCATGCAAAAGAAAAT
302 TCC-TGCGACACCAAAG
* * * * * *
7549 CGTTAATATCATTTATCGAACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGCAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
7614 ATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
*
7679 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
7744 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAGAG
*
7808 GCAAACTTTGATTCTAACAAAATCGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
* ** * ** * * **
7866 CATAAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * ** * * *
7928 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATT-CAGGATGAA-TTTGTATTTTAAGAAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAG-ACTTT-ACAAAAA
* * ** * ** * * * * * ***
7989 TAGG-GTAAAGAAA-AGATTTTCATGCAAA-AGAAAGTCATCAATATCATTTATCATAACGAAAA
124 TTGGAGTGAAGAAATCCA--TTCTTGCAAATCCAAAG-CATCAATTTCGTCTATCCTAATGAGTT
* * * * * ** *
8051 GAATGTGTTTATAGTGCGTAATCAC--AAAATGAATGAAGATCATTACTAGAATCT-TT--T-TT
186 GACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-TAG-GGATTAGTAGAA-CTATTCATGTT
* * * ** * * * *
8110 TGTCTCATTT--GGGGCACAAACTTAGACTT-T-ACAGAAATTGG-AGTGAAGAAATCC-ATTCT
245 TGTCTTATTTAAGAGG--CAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTCC
8169 TGCGA-ATCCAAAG
305 TGCGACA-CCAAAG
* * * *** * * * * * *
8182 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGTGCCTAATC-CTAAAAAG-ATTA
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC-AAAATGAATGA
* * * * ** * * *
8244 GGGATTAGTA-TA-ACTATTCAAGTTTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACAAA
64 -AGATCATTACTAGA--ATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAAA
* * * * * * * * *
8304 AA-CGGTAGAGACGAAA-CCTTTTCCTGTG-ACA-CCAAAGCATAAATATCATTTATCCTAATGA
122 AATTGG-AGTGAAGAAATCC-ATT-CT-TGCAAATCCAAAGCATCAATTTCGTCTATCCTAATG-
* * ** ** * * * *
8365 AG-GGATTGGGTTCTTAGTTCCAAATCTTGAAAAGATT-GGAGA-CAGTTACGAGA--A-TCGAT
182 AGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GA-ACTATTC-AT
** * * * * * * ***
8424 AATTGTCATAATTCAG-GG-ATGAA-TTTGTATTTTAAGAAAAATAGGGTA-A-A-GAAATGATT
242 GTTTGTCTTATTTAAGAGGCA--AACTTTG-ATTCTAA-CAAAA-ACGGTAGAGACGAAACCTTT
* * ** *
8483 TCCATGCAAAAGAAAAT
302 TCC-TGCGACACCAAAG
* * *
8500 CATCAATATCATTTATCCTACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * ** *
8565 ATCATTACTAGAATCTTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAGAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
*
8630 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
8695 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAGAG
*
8759 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
** * ** * * *
8817 CATCAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTCAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * ** *
8879 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAATTTTTATTTTA-AGGAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAGACTTTACA--AAAA
* * * * *** * * * * * * ** **
8941 TAGG-G-CAGAGAAAT-GATTTCCATGCAAAAGAAAATCGTTAATATCATTTATCGAAATGAGAA
124 TTGGAGTGA-AGAAATCCA-TT-CTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTT
* * * * * ** * *
9003 GAATGTGTTTATAGTGCGTAATCAC--AAAATGAATGCAGATCATTACTAGAA-TCCTT--T-TT
186 GACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-TAG-GGATTAGTAGAACT-ATTCATGTT
* * * ** * * * *
9062 TGTCTCATTT--GGGGCACAAACTTAGACTT-T-ACAGAAATTGG-AGTGAAGAAATCC-ATTCT
245 TGTCTTATTTAAGAGG--CAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTCC
9121 TGCGA-ATCCAAAG
305 TGCGACA-CCAAAG
* * * *** * * * * * *
9134 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGTGCCTAATC-CTAAAAAG-ATTA
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC-AAAATGAATGA
* * * * * * * *
9196 GGGATTAGTA-TA-ACTATTCATGTTTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACAAA
64 -AGATCATTACTAGA--ATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAAA
* * * * * * * * *
9256 AA-CGGTAGAGACGAAA-CCTTTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAAAGAA
122 AATTGG-AGTGAAGAAATCC-ATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAATG-A
* * ** ** * * * * * *
9318 G-GGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAAT-GGAGA-CAGTTACGAGA--A-TCGATA
183 GTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GA-ACTATTC-ATG
* * * * * * * * * ***
9377 ATTGTCATAATTCAG-GG-ATGAATTTTTATTTTAAGGAAAATAGGGTA-A-A-GAAATGATTTC
243 TTTGTCTTATTTAAGAGGCA--AACTTTGATTCTAA-CAAAA-ACGGTAGAGACGAAACCTTTTC
* * ** *
9437 CATGCAAAAGAAAAT
304 C-TGCGACACCAAAG
* * * * *
9452 CATCAATATCATTTATCCTACTGAAAAGAATGTGTCTATGGTGCGTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
9517 ATTATTACTAGAATCCTTTTTTGTCTCA-TTTAAGGCACAAACTTAGACTTTACAGAAATTGGAG
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAA-GCACAAACTTAGACTTTACAAAAATTGGAG
*
9581 TGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTT
130 TGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTT
*
9646 GATAGCGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATGTTTGTCTTATTTAAGA
195 GATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GAACTATTCATGTTTGTCTTATTTAAGA
*
9710 GGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
259 GGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
* ** * ** * * **
9769 CATCAATATCATTTATCCTAA-AGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * ** *
9831 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAATTTTTATTTTA-AGGAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAGACTTTACA--AAAA
* * * * *** * * * * * ***
9893 TAGG-GTAAAGAAAT-GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTACTGAAAAG
124 TTGGAGTGAAGAAATCCA-TT-CTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTG
* * * * * * * ** ** * * *
9956 AATGTGTCT-ATGGTGCGTAATCAC--AAAATGAAT-GAAGATTATTACTAGAATCCTTTTTTGT
187 ACTATGT-TGATAGTGCCTAATC-CTGAAAA-GATTAG-GGATTAGTAGAACTATTCATGTTTGT
* * * ** * * * *
10017 CTCATTTAAG-GCACAAACTTAGACTT-T-ACAGAAATTGG-AGTGAAGAAATCC-ATTCTTGCG
248 CTTATTTAAGAG-GCAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTCCTGCG
10077 A-ATCCAAAG
309 ACA-CCAAAG
* * * *** * * * * * ** *
10086 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGCGCCTAATCTTGAAAA-G-AT-T
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATC-ACAAAATGAATGA
** * * * * * *
10147 AG-GGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACAAA
64 AGATCATTACTA-GA--ATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAAA
* * * * * * * * * *
10208 AA-CGGTAGAGACGAAA-CCTTTTCCTACGACA-CCAAAGCATCAATATCATTTATCCTAATGAA
122 AATTGG-AGTGAAGAAATCC-ATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAATG-A
* * ** ** * * * * * *
10270 G-GGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAAT-GGAGA-CAGTTACGAGA--A-TCGATA
183 GTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GA-ACTATTC-ATG
* * * * * * * * **
10329 ATTGTCATAATTCAG-GG-ATGAA-TTTGTATTTTAAGAAAAATAGGGTAAAGA--AAAGATTTT
243 TTTGTCTTATTTAAGAGGCA--AACTTTG-ATTCTAA-CAAAA-ACGGTAGAGACGAAACCTTTT
* * **
10389 CATGC-AAAAGAAAG
303 CCTGCGACACCAAAG
* * * * *
10403 TCATTAATATCATTTATCGTAAC-GAAAAGAATGTATTTTTAGTGCCTAATCACAAAATTAATGT
1 -CATCAATATCATTTATC-CAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGA
* * * * * *
10467 AGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTCCAGAAATTGGA
64 AGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGA
**
10532 GTGAAGAAATCCATTCTTGTGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
129 GTGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
*
10597 TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGA
194 TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGAACTATTCATGTTTGTCTTATTTAAGA
*
10662 GGCAGACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
259 GGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
* ** * ** * * **
10721 CATAAATATCATTTATCCTAA-TGAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GAATG
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATT-TATAGTGCCTAATC-ACAAAATGAATG
* * ** ** * * * * ** * * *
10783 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAA-TTTGTATTTTAAAAAAAA
63 AAGATCA-TTACTAGAATCCTTGTTTGTC-TCACTTGAAGCACAAACTTAG-ACTTT-ACAAAAA
* * ** * ** * * * * * ***
10845 TAGG-GTAAAGAAA-AGATTTTCATGCAAA-AGAAAGTCATCAATATCATTTATCGTAACGAAAA
124 TTGGAGTGAAGAAATCCA--TTCTTGCAAATCCAAAG-CATCAATTTCGTCTATCCTAATGAGTT
* * * ** * * * *
10907 GAATGTATTTTTAGTGCCTAAT-C--ACAAA-ATTA---ATGTAGATCGTTACTAGAGTCCTTGT
186 GACTATGTTGATAGTGCCTAATCCTGA-AAAGATTAGGGAT-TAG-TAG-AACT--A-TTCATGT
* * * * * ** * * *
10965 TTGTCTCACTTGAAGCA--CGAACTTGGACTT-T-CCAGAAATTGG-AGTGAAGAAATCC-ATTC
244 TTGTCTTA-TTTAAG-AGGCAAACTTTGA-TTCTAACA-AAAACGGTAGAGACGAAA-CCTTTTC
* *
11024 TTGTGA-ATCCAAAG
304 CTGCGACA-CCAAAG
* * * *** * * * *
11038 CATCAATTTCGTCTATCCTAA-TGAGTTGACTATGTTGATAGTGCCTAATC-CTGAAAA-G-AT-
1 CATCAATATCATTTATCC-AACTGAAAAGAATGTATTTATAGTGCCTAATCAC--AAAATGAATG
* ** * * * * * * *
11098 TAG-GGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAG-AGGCAGACTTTGA-TTCTAACAA
63 AAGATCATTACTA-GA--ATCCTTGTTTGTCTCACTTGAAGCA--CAAACTTAGACTT-T-ACAA
* * * * * * * * *
11159 AAA-CGGTAGAGAGGAAA-CCTTTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAATAA
121 AAATTGG-AGTGAAGAAATCC-ATTCTTGC-AAATCCAAAGCATCAATTTCGTCTATCCTAAT-G
* * ** ** * * * * * * * * *
11221 AG-GGAATGGGTTCTTTGTTCCAAATCTTGAGAAGAAT-GGAGA-CAGTTACGAGC-A-TCGATA
182 AGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGG-GATTAG-TA-GAACTATTC-ATG
* * * * **** * * * ** * ***
11281 ATTGTCATAATTCAGATATGAATTTTTATTTTGAGGAAAATAGGGTA-A-A-GAAATGATTTCCA
243 TTTGTCTTATTTAAGAGGCAAACTTTGATTCT-AACAAAA-ACGGTAGAGACGAAACCTTTTCC-
* * * *
11343 TGCAAAACAAAAT
305 TGCGACACCAAAG
* *
11356 CATCAATATCATTTATCCAACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
11421 ATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
* *
11486 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTGATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
*
11551 ATAGTGCCTAATCCT-AAAATGATTAGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAA-GATTAGGGATTAGTAGAACTATTCATGTTTGTCTTATTTAAGAG
*
11615 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
* * *
11673 CATCAATATCATTTATCATAAC-GAAAAGAATGTATTTATAGTGCCTAATCACAAAATTAATGTA
1 CATCAATATCATTTATC-CAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAA
* * * *
11737 GATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATTGGAG
65 GATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAG
11802 TGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTT
130 TGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTT
*
11867 GATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGGACTATTCATGTTTGTCTTATTTAAGAG
195 GATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGAACTATTCATGTTTGTCTTATTTAAGAG
11932 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
260 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
*
11990 CATCAATATCATTTATCCTAATTGAAA
1 CATCAATATCATTTATCC-AACTGAAA
12017 GGGATTGGGT
Statistics
Matches: 6264, Mismatches: 1877, Indels: 1541
0.65 0.19 0.16
Matches are distributed among these distances:
312 8 0.00
313 23 0.00
314 43 0.01
315 153 0.02
316 485 0.08
317 3289 0.53
318 1695 0.27
319 362 0.06
320 119 0.02
321 77 0.01
322 7 0.00
323 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (317 bp):
CATCAATATCATTTATCCAACTGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAAAAATTGGAGT
GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGAACTATTCATGTTTGTCTTATTTAAGAGG
CAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
Found at i:11934 original size:793 final size:790
Alignment explanation
Indices: 10875--12479 Score: 2716
Period size: 793 Copynumber: 2.0 Consensus size: 790
10865 CATGCAAAAG
* *
10875 AAAGTCATCAATATCATTTATCGTAACGAAAAGAATGTATTTTTAGTGCCTAATCACAAAATTAA
1 AAAG-CATCAATATCATTTATCATAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATTAA
* *
10940 TGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTCCAGAAATT
65 TGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATT
**
11005 GGAGTGAAGAAATCCATTCTTGTGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTA
130 GGAGTGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTA
*
11070 TGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
195 TGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGGACTATTCATGTTTGTCTTATTTA
* * *
11135 AGAGGCAGACTTTGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTGCGACACCAAAGCAT
260 AGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAGCAT
* *
11200 CAATATCATTTATCCTAA-T-AAAGGGAATGGGTTCTTTGTTCCAAATCTTGAGAAGAATGGAGA
325 CAATATCATTTATCCTAATTGAAAGGGAATGGGTTCTTAGTTCCAAATCTTGAAAAG-ATGGAGA
* * * * *
11263 CAGTTACGAGCATCGATAATTGTCATAATTCAGATATGAATTTTTATTTTGAGGAAAATAGGGTA
389 CAGTTACGAGAATCGATAATTGTCATAATTCAGAGATGAATTTGTATTTTAAGAAAAATAGGGTA
* *
11328 AAGAAATGATTTCCATGCAAAACAAAATCATCAATATCATTTATC-CAACTGAAAAGAATGTGTT
454 AAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCGCAAC-G-AAAGAATGTATT
* * * *
11392 TATAGTGCGTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGC
517 T-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGC
11457 ACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCC-ATTCTTGCGAATCCAAAGCATCAAT
581 ACAAACTTAGACTTTACAG-AATTGGAGTGAAGAAATCCAATTCTTGCGAATCCAAAGCATCAAT
*
11521 TTCGTCTATCCTGATGAGTTGACTATGTTGATAGTGCCTAATCCT-AAAATGATTAGGGATTAGT
645 TTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAA-GATTAGGGATTAGT
11585 ATAACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGA
709 ATAACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAAC-AAAACGGTAGAGACGA
*
11650 AACCTTTTCTTGCGACACC
773 AA-CGTTTCTTGCGACACC
11669 AAAGCATCAATATCATTTATCATAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATTAAT
1 AAAGCATCAATATCATTTATCATAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATTAAT
11734 GTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATTG
66 GTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATTG
11799 GAGTGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTAT
131 GAGTGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTAT
11864 GTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGGACTATTCATGTTTGTCTTATTTAA
196 GTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGGACTATTCATGTTTGTCTTATTTAA
11929 GAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAGCATC
261 GAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAGCATC
*
11994 AATATCATTTATCCTAATTGAAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGATGGAGACA
326 AATATCATTTATCCTAATTGAAAGGGAATGGGTTCTTAGTTCCAAATCTTGAAAAGATGGAGACA
*
12059 GTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAA
391 GTTACGAGAATCGATAATTGTCATAATTCAGAGATGAATTTGTATTTTAAGAAAAATAGGGTAAA
* * * * *
12124 GAAAAGATTTTCATGCAAAAGAAAGTCATTAATATCATTTATCGTAACGAAAGAATGTATTTTAG
456 GAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCGCAACGAAAGAATGTATTTTAG
* * * * *
12189 TGCCTAATCACAAAATTAATGTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAA
521 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAA
* * *
12254 CTTGGACTTTCCAGAATTGGAGTGAAGAAATCCAATTCTTGTGAATCCAAAGCATCAATTTCGTC
586 CTTAGACTTTACAGAATTGGAGTGAAGAAATCCAATTCTTGCGAATCCAAAGCATCAATTTCGTC
12319 TATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATAACTA
651 TATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATAACTA
* *
12384 TTCATGTTTGTCTTATTTAAGAGGCAGACTTTGATTCTAACAAAACGGTAGAGAGGAAACGTTTC
716 TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAACGGTAGAGACGAAACGTTTC
12449 TTGCGACACC
781 TTGCGACACC
12459 AAAGCATCAATATCATTTATC
1 AAAGCATCAATATCATTTATC
12480 CTAATAAAGG
Statistics
Matches: 764, Mismatches: 42, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
790 36 0.05
791 36 0.05
792 200 0.26
793 344 0.45
794 112 0.15
795 36 0.05
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32
Consensus pattern (790 bp):
AAAGCATCAATATCATTTATCATAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATTAAT
GTAGATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATTG
GAGTGAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTAT
GTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAGGACTATTCATGTTTGTCTTATTTAA
GAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAGCATC
AATATCATTTATCCTAATTGAAAGGGAATGGGTTCTTAGTTCCAAATCTTGAAAAGATGGAGACA
GTTACGAGAATCGATAATTGTCATAATTCAGAGATGAATTTGTATTTTAAGAAAAATAGGGTAAA
GAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCGCAACGAAAGAATGTATTTTAG
TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAA
CTTAGACTTTACAGAATTGGAGTGAAGAAATCCAATTCTTGCGAATCCAAAGCATCAATTTCGTC
TATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATAACTA
TTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAACGGTAGAGACGAAACGTTTC
TTGCGACACC
Found at i:12192 original size:317 final size:315
Alignment explanation
Indices: 11356--12197 Score: 772
Period size: 317 Copynumber: 2.7 Consensus size: 315
11346 AAAACAAAAT
* ** *
11356 CATCAATATCATTTATC-CAACTGAAAAGAATGTG-TTTATAGTGCGTAATCACAAAATGAATGA
1 CATCAATATCATTTATCATAAC-GAAAAGAATG-GATTTATAGTGCCAAATCACAAAAT-AATGG
* * * ** * * * * * * *
11419 AGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGA
63 AGATCGTTACGAGAATCCATAATTGTCTCAATTCAAGCACGAACTTGGACTTTACAAAAATAGGA
* * * * * * * * * **
11484 GTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTGATGAGTTGACTATGT
128 GTAAAGAAATACATTCATGCAAATACAAAGCATCAATATCATCTATCCTAACGAGAAGAC-ATGT
*
11549 TGATAGTGCCTAATCCTAAAATGATTAGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGA
192 TGATAGTGCCTAATCCTAAAATGATTAGGGATTAGTAGAACTATTCATGTTTGTCTTATTTAAGA
*
11614 GGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAG
257 GGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
* * *
11673 CATCAATATCATTTATCATAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATTAATGTAG
1 CATCAATATCATTTATCATAACGAAAAGAATGGATTTATAGTGCCAAATCACAAAA-TAATGGAG
* * * ** * * *
11738 ATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATTGGAGT
65 ATCGTTACGAGAATCCATAATTGTCTCAATTCAAGCACGAACTTGGACTTTACAAAAATAGGAGT
* * * * * * * **
11803 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
130 AAAGAAATACATTCATGCAAATACAAAGCATCAATATCATCTATCCTAACGAGAAGAC-ATGTTG
*
11868 ATAGTGCCTAATCCTGAAAA-GATTAGGGATTAGTAGGACTATTCATGTTTGTCTTATTTAAGAG
194 ATAGTGCCTAATCCT-AAAATGATTAGGGATTAGTAGAACTATTCATGTTTGTCTTATTTAAGAG
11932 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
258 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
* * * * * * ** *
11990 CATCAATATCATTTATCCTAATTGAAAGGGATTGGGTTCT-TAGTTCCAAATCTTGAAAA-GATG
1 CATCAATATCATTTATCATAA-CGAAA-AGAATGGATT-TATAGTGCCAAATC-ACAAAATAATG
* * * * * * * *
12053 GAGA-CAGTTACGAGAATCGATAATTGTCAT-AATTCAGGGATGAATTTGTATTTTAAGAAAAAT
62 GAGATC-GTTACGAGAATCCATAATTGTC-TCAATTCAAGCACGAACTTGGACTTT-ACAAAAAT
* * * * *
12116 AGG-GTAAAGAAA-AGATTTTCATGCAAA-AGAAAGTCATTAATATCATTTATCGTAACGA-AAG
124 AGGAGTAAAGAAATACA--TTCATGCAAATACAAAG-CATCAATATCATCTATCCTAACGAGAAG
**
12177 A-ATGTATTTTAGTGCCTAATC
186 ACATGT-TGATAGTGCCTAATC
12198 ACAAAATTAA
Statistics
Matches: 449, Mismatches: 61, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
316 4 0.01
317 323 0.72
318 64 0.14
319 53 0.12
320 5 0.01
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (315 bp):
CATCAATATCATTTATCATAACGAAAAGAATGGATTTATAGTGCCAAATCACAAAATAATGGAGA
TCGTTACGAGAATCCATAATTGTCTCAATTCAAGCACGAACTTGGACTTTACAAAAATAGGAGTA
AAGAAATACATTCATGCAAATACAAAGCATCAATATCATCTATCCTAACGAGAAGACATGTTGAT
AGTGCCTAATCCTAAAATGATTAGGGATTAGTAGAACTATTCATGTTTGTCTTATTTAAGAGGCA
AACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAG
Found at i:12960 original size:160 final size:158
Alignment explanation
Indices: 12771--13440 Score: 394
Period size: 160 Copynumber: 4.2 Consensus size: 158
12761 TTCTGCGAAT
* * *
12771 CCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTAAAAAGA
1 CCAAAGCATCAATATCATTTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTAAAAAGA
*
12836 TTAGGGATTAGTATGAACTATTCATGTTTGTCCTTATTTAAGAGGCAAACTTTGATTCTAACAAA
66 TT-GGGATTAGTATGAACTATTCATATTTGT-CTTATTTAAGAGGCAAACTTTGATTCTAACAAA
12901 AACGGTAGAGACGAAACCTTTTTCGCGACA
129 AACGGTAGAGACGAAACCTTTTTCGCGACA
* * * ** ** * * * *
12931 CCAAAGCATAAATATCATTTATCCTAATGAAG-GGATTGGGTTCTTAGTTCCAAATCTTGAAAAG
1 CCAAAGCATCAATATCATTTATCCTAATG-AGTTGACTATGTTGATAGTGCCTAATCCTAAAAAG
* * * * * *
12995 ATTGGAGACTAGTTACGAGA--A-TCGATAATTGTCATAATTCAAG-GG-ATGAA-TTTGTATTT
65 ATTGG-GATTAG-TATGA-ACTATTC-ATATTTGTC-TTATTTAAGAGGCA--AACTTTG-ATTC
* * *** * * *
13054 TAAGAAAAATAGGGTA-A-A-GAAATGATTTCCATGCCAAA
122 TAA-CAAAA-ACGGTAGAGACGAAACCTTTTTC--GCGACA
* * * *** * * * * * *
13092 CAAAAATCATCAATATCATTTATCCTACTGAAAACGAATGTGTTTATAGTGCGTAATCCCAAAAT
1 C-CAAAGCATCAATATCATTTATCCTAATG-AGTTGACTATGTTGATAGTGCCTAATCCTAAAAA
* * * * * * *
13157 GAATGAAGATCATTACTAGAATCT-TT--T-TTTGTCTCATTT--GGGGCACAAACTTAGACTT-
64 GATTG-GGATTAGTA-T-GAA-CTATTCATATTTGTCTTATTTAAGAGG--CAAACTTTGA-TTC
** * * *
13215 T-ACAGAAATTGG-AGTGAAGAAATCCATTCTT-GCGA-A
122 TAACA-AAAACGGTAGAGACGAAA-CC-TTTTTCGCGACA
* * * *
13251 TCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAG
1 -CCAAAGCATCAATATCATTTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTAAAAAG
13316 ATTAGGGATTAGTATG-ACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAA
65 ATT-GGGATTAGTATGAACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAA
*
13380 AACGGTAGAGACGAAACCTTTTCTTGCGACA
129 AACGGTAGAGACGAAACCTTTT-TCGCGACA
13411 CCAAAGCATCAATATCATTTATCCTAATGA
1 CCAAAGCATCAATATCATTTATCCTAATGA
13441 AGGGATTGGG
Statistics
Matches: 365, Mismatches: 97, Indels: 97
0.65 0.17 0.17
Matches are distributed among these distances:
154 2 0.01
155 3 0.01
156 1 0.00
157 7 0.02
158 64 0.18
159 89 0.24
160 93 0.25
161 28 0.08
162 44 0.12
163 31 0.08
164 2 0.01
166 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (158 bp):
CCAAAGCATCAATATCATTTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTAAAAAGA
TTGGGATTAGTATGAACTATTCATATTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAA
CGGTAGAGACGAAACCTTTTTCGCGACA
Found at i:13187 original size:480 final size:476
Alignment explanation
Indices: 11673--13576 Score: 3005
Period size: 475 Copynumber: 4.0 Consensus size: 476
11663 GACACCAAAG
* * *
11673 CATCAATATCATTTATCATAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATTAATGTAG
1 CATCAATATCATTTATCCTAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
11738 ATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTACAAAAATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAGAAATTGGAGT
*
11803 GAAGAAATCCATTCTTGCAAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
131 GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
*
11868 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA-GGACTATTCATGTTTGTCTTATTTAAGAG
196 ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGAACTATTCATGTTTGTCTTATTTAAGAG
*
11932 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCCTGCGACACCAAAGCATCAAT
261 GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTTC-GCGACACCAAAGCATCAAT
11997 ATCATTTATCCTAATTGAAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAG-ATGGAGACAGT
325 ATCATTTATCCTAA-TG-AAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACAGT
12061 TACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAAGA
388 TACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAAGA
* * *
12126 AAAGATTTTCATGCAAA-AGAAAGT
453 AATGATTTCCATGCAAACA-AAAAT
* * * *
12150 CATTAATATCATTTATCGTAACG-AAAGAATGTATTT-TAGTGCCTAATCACAAAATTAATGTAG
1 CATCAATATCATTTATCCTAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
12213 ATCGTTACTAGAGTCCTTGTTTGTCTCACTTGAAGCACGAACTTGGACTTTCCAG-AATTGGAGT
66 ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAGAAATTGGAGT
*
12277 GAAGAAATCCAATTCTTGTGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTT
131 GAAGAAATCC-ATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTT
12342 GATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAT-AACTATTCATGTTTGTCTTATTTAAGA
195 GATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGAACTATTCATGTTTGTCTTATTTAAGA
* * *
12406 GGCAGACTTTGATTCTAAC-AAAACGGTAGAGAGGAAACGTTTCTT-GCGACACCAAAGCATCAA
260 GGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTT-TTCGCGACACCAAAGCATCAA
* * *
12469 TATCATTTATCCTAATAAAGGGAATGGGTTCTTAGTT-CAAATCTTGAGAAGAAT-GAGACAGTT
324 TATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACAGTT
* ** * * *
12532 ACGAGCATCGATAATTGTCATAATTCAGATATGAATTTTTATTTTGAGGAAAATAGGGTAAAGAA
389 ACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAAGAA
12597 ATGATTTCCATGCAAAC-AAAAT
454 ATGATTTCCATGCAAACAAAAAT
* *
12619 CATCAATATCATTTATCC-AACTGAAAAGAATGTGTTTTATAGTGCGTAATCACAAAATGAATGA
1 CATCAATATCATTTATCCTAAC-GAAAAGAATGT-ATTTATAGTGCCTAATCACAAAATGAATGA
* * *
12683 AGATCATTACTAGAATCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGA
64 AGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAGAAATTGGA
*
12748 GTGAATAAATCCATTC-TGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
129 GTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
*
12812 TGATAGTGCCTAATCCTAAAAAGATTAGGGATTAGTATGAACTATTCATGTTTGTCCTTATTTAA
194 TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGAACTATTCATGTTTGT-CTTATTTAA
*
12877 GAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTTCGCGACACCAAAGCATAA
258 GAGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTTCGCGACACCAAAGCATCA
*
12942 ATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGATTGGAGACTAG
323 ATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGAC-AG
13007 TTACGAGAATCGATAATTGTCATAATTCAAGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAA
387 TTACGAGAATCGATAATTGTCATAATTC-AGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAA
13072 GAAATGATTTCCATGCCAAACAAAAAT
451 GAAATGATTTCCATG-CAAACAAAAAT
* * *
13099 CATCAATATCATTTATCCT-ACTGAAAACGAATGTGTTTATAGTGCGTAATCCCAAAATGAATGA
1 CATCAATATCATTTATCCTAAC-GAAAA-GAATGTATTTATAGTGCCTAATCACAAAATGAATGA
* * * **
13163 AGATCATTACTAGAATCTTTTTTTGTCTCATTTGGGGCACAAACTTAGACTTTACAGAAATTGGA
64 AGATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAGAAATTGGA
13228 GTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
129 GTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGT
*
13293 TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG-ACTATTCATATTTGTCTTATTTAAG
194 TGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGAACTATTCATGTTTGTCTTATTTAAG
*
13357 AGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTCTTGCGACACCAAAGCATCA
259 AGGCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTT-TCGCGACACCAAAGCATCA
*
13422 ATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTCAAAAGAATGGAGACAGT
323 ATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACAGT
* * * *
13487 TACGAGAATCGATAATTGTCATAATTTAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGA
388 TACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAAGA
13552 AATGATTTCCATGCAAA-AGAAAAT
453 AATGATTTCCATGCAAACA-AAAAT
13576 C
1 C
13577 GTTAAT
Statistics
Matches: 1333, Mismatches: 69, Indels: 50
0.92 0.05 0.03
Matches are distributed among these distances:
468 3 0.00
469 21 0.02
470 104 0.08
471 108 0.08
472 92 0.07
473 82 0.06
474 113 0.08
475 228 0.17
476 19 0.01
477 60 0.05
478 94 0.07
479 89 0.07
480 228 0.17
481 92 0.07
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (476 bp):
CATCAATATCATTTATCCTAACGAAAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCTTGTTTGTCTCACTTGAAGCACAAACTTAGACTTTACAGAAATTGGAGT
GAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG
ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGAACTATTCATGTTTGTCTTATTTAAGAG
GCAAACTTTGATTCTAACAAAAACGGTAGAGACGAAACCTTTTTCGCGACACCAAAGCATCAATA
TCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACAGTTAC
GAGAATCGATAATTGTCATAATTCAGGGATGAATTTGTATTTTAAGAAAAATAGGGTAAAGAAAT
GATTTCCATGCAAACAAAAAT
Done.