Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold139
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1720190
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 4798 characters in sequence are not A, C, G, or T
File 5 of 11
Found at i:728453 original size:8 final size:8
Alignment explanation
Indices: 728440--728465 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
728430 ATTTGATTAA
728440 ATTTTGTG
1 ATTTTGTG
728448 ATTTTGTG
1 ATTTTGTG
728456 ATTTTGTG
1 ATTTTGTG
728464 AT
1 AT
728466 GAATGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:730617 original size:24 final size:22
Alignment explanation
Indices: 730569--730610 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
730559 CGAAAGTGTT
730569 AAATTATTTTATTAAGGGGGAG
1 AAATTATTTTATTAAGGGGGAG
730591 AAATT-TTTTGATTAAGGGGG
1 AAATTATTTT-ATTAAGGGGG
730611 GGAGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (22 bp):
AAATTATTTTATTAAGGGGGAG
Found at i:730886 original size:24 final size:22
Alignment explanation
Indices: 730838--730879 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
730828 CGAAAGTGTT
730838 AAATTATTTTATTAAGGGGGAG
1 AAATTATTTTATTAAGGGGGAG
730860 AAATT-TTTTGATTAAGGGGG
1 AAATTATTTT-ATTAAGGGGG
730880 GGAGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (22 bp):
AAATTATTTTATTAAGGGGGAG
Found at i:731034 original size:269 final size:269
Alignment explanation
Indices: 730555--731358 Score: 1466
Period size: 269 Copynumber: 2.9 Consensus size: 269
730545 GAATTGTTAA
730555 TGTGCGAAAGTGTTAAATTATTTTATTAAGGGGGAGAAATTTTTTGATTAAGGGGGGGAGAAAAG
1 TGTGCGAAAGTGTTAAATTATTTTATTAAGGGGGAGAAATTTTTTGATTAAGGGGGGGAGAAAAG
730620 AAAAATGAAAAATCTTGATATTTGAACTTTACTAATGTGTTTCTTGAAGCTATGGAAGTCAAGCA
66 AAAAATGAAAAATCTTGATATTTGAACTTTACTAATGTGTTTCTTGAAGCTATGGAAGTCAAGCA
730685 GTTTGTTGAAACAAGGAGAATGATTGTACACGAGCTTGAATATAATGGTAAGATCACAAAATGCT
131 GTTTGTTGAAACAAGGAGAATGATTGTACACGAGCTTGAATATAATGGTAAGATCACAAAATGCT
730750 ACCCGAATATATACATTTGAAAATTATGCAAACAAAAGGGATTAGAGTCAACCAAAATTTTGATA
196 ACCCGAATATATACATTTGAAAATTATGCAAACAAAAGGGATTAGAGTCAACCAAAATTTTGATA
730815 TTTGAAAAT
261 TTTGAAAAT
730824 TGTGCGAAAGTGTTAAATTATTTTATTAAGGGGGAGAAATTTTTTGATTAAGGGGGGGAGAAAAG
1 TGTGCGAAAGTGTTAAATTATTTTATTAAGGGGGAGAAATTTTTTGATTAAGGGGGGGAGAAAAG
730889 AAAAATGAAAAATCTTGATATTTGAACTTTACTAATGTGTTTCTTGAAGCTATGGAAGTCAAGCA
66 AAAAATGAAAAATCTTGATATTTGAACTTTACTAATGTGTTTCTTGAAGCTATGGAAGTCAAGCA
730954 GTTTGTTGAAACAAGGAGAATGATTGTACACGAGCTTGAATATAATGGTAAGATCACAAAATGCT
131 GTTTGTTGAAACAAGGAGAATGATTGTACACGAGCTTGAATATAATGGTAAGATCACAAAATGCT
731019 ACCCGAATATATACATTTGAAAATTATGCAAACAAAAGGGATTAGAGTCAACCAAAATTTTGATA
196 ACCCGAATATATACATTTGAAAATTATGCAAACAAAAGGGATTAGAGTCAACCAAAATTTTGATA
731084 TTTGAAAAT
261 TTTGAAAAT
*
731093 TGTGCGAAAGTGTTAAATTATTTTATTAAGGGGGAGAAATTTTTTGATTAAGGGGGAGAGAAAAG
1 TGTGCGAAAGTGTTAAATTATTTTATTAAGGGGGAGAAATTTTTTGATTAAGGGGGGGAGAAAAG
731158 AAAAATGAAAAATCTTGATATTTGAACTTTACTAATGTGTTTCTTGAAGCTATGGAAGTCAGATT
66 AAAAATGAAAAATCTTGATATTTGAACTTTACTAATGTGTTTCTTGAAGCTATGG-A---AG--T
* *
731223 ACAGGTTAAGCAGTATGTTGAAACAAAGAGAATGATTGTACACGAGCTTGAATATAATGGTAAGA
125 -C-----AAGCAGTTTGTTGAAACAAGGAGAATGATTGTACACGAGCTTGAATATAATGGTAAGA
731288 TCACAAAATGCTACCCGAATATATACATTTGAAAATTATGCAAAC-AAAGGGATTAGAGTCAACC
184 TCACAAAATGCTACCCGAATATATACATTTGAAAATTATGCAAACAAAAGGGATTAGAGTCAACC
731352 AAAATTT
249 AAAATTT
731359 ATTTTCTAAG
Statistics
Matches: 520, Mismatches: 3, Indels: 13
0.97 0.01 0.02
Matches are distributed among these distances:
269 388 0.75
270 1 0.00
273 2 0.00
275 1 0.00
276 1 0.00
280 26 0.05
281 101 0.19
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (269 bp):
TGTGCGAAAGTGTTAAATTATTTTATTAAGGGGGAGAAATTTTTTGATTAAGGGGGGGAGAAAAG
AAAAATGAAAAATCTTGATATTTGAACTTTACTAATGTGTTTCTTGAAGCTATGGAAGTCAAGCA
GTTTGTTGAAACAAGGAGAATGATTGTACACGAGCTTGAATATAATGGTAAGATCACAAAATGCT
ACCCGAATATATACATTTGAAAATTATGCAAACAAAAGGGATTAGAGTCAACCAAAATTTTGATA
TTTGAAAAT
Found at i:731147 original size:21 final size:22
Alignment explanation
Indices: 731107--731151 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
731097 CGAAAGTGTT
731107 AAATTATTTTATTAAGGGGGAG
1 AAATTATTTTATTAAGGGGGAG
731129 AAATT-TTTTGATTAAGGGGGAG
1 AAATTATTTT-ATTAAGGGGGAG
731151 A
1 A
731152 GAAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (22 bp):
AAATTATTTTATTAAGGGGGAG
Found at i:731724 original size:13 final size:13
Alignment explanation
Indices: 731706--731730 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
731696 AGATTGCACA
731706 GTATCGATACATT
1 GTATCGATACATT
731719 GTATCGATACAT
1 GTATCGATACAT
731731 GACTAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:731759 original size:19 final size:20
Alignment explanation
Indices: 731718--731768 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
731708 ATCGATACAT
*
731718 TGTATCGATACATGACTAAA
1 TGTATCGATACATGACAAAA
*
731738 TGTATCGATACTTGA-AAAA
1 TGTATCGATACATGACAAAA
731757 TGTATCGATACA
1 TGTATCGATACA
731769 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATGACAAAA
Found at i:731828 original size:13 final size:13
Alignment explanation
Indices: 731810--731835 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
731800 ACACACAATA
731810 TGTATCGATACAT
1 TGTATCGATACAT
731823 TGTATCGATACAT
1 TGTATCGATACAT
731836 CACAAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:731831 original size:32 final size:32
Alignment explanation
Indices: 731790--731856 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
731780 GTAGCTAAAT
731790 TTGTATCGATACA-CACAATATGTATCGATACA
1 TTGTATCGATACATCACAA-ATGTATCGATACA
731822 TTGTATCGATACATCACAAATGTATCGATACA
1 TTGTATCGATACATCACAAATGTATCGATACA
731854 TTG
1 TTG
731857 GCTTGTAACG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 29 0.85
33 5 0.15
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATCACAAATGTATCGATACA
Found at i:731854 original size:19 final size:19
Alignment explanation
Indices: 731791--731854 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
731781 TAGCTAAATT
731791 TGTATCGATACA-CACAATA
1 TGTATCGATACATCACAA-A
731810 TGTATCGATACAT------
1 TGTATCGATACATCACAAA
731823 TGTATCGATACATCACAAA
1 TGTATCGATACATCACAAA
731842 TGTATCGATACAT
1 TGTATCGATACAT
731855 TGGCTTGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 13 0.34
19 25 0.66
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (19 bp):
TGTATCGATACATCACAAA
Found at i:734615 original size:21 final size:23
Alignment explanation
Indices: 734579--734621 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
734569 ATTTTTAAGA
734579 TTTGATAAAAGAGGAA-AAATAC
1 TTTGATAAAAGAGGAAGAAATAC
*
734601 TTTGAT-AAAGGGGAAGAAATA
1 TTTGATAAAAGAGGAAGAAATA
734622 TGTTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.23, T:0.23
Consensus pattern (23 bp):
TTTGATAAAAGAGGAAGAAATAC
Found at i:735230 original size:13 final size:13
Alignment explanation
Indices: 735212--735238 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
735202 ACATTATGCT
735212 TTGTATCGATACA
1 TTGTATCGATACA
735225 TTGTATCGATACA
1 TTGTATCGATACA
735238 T
1 T
735239 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:736705 original size:11 final size:11
Alignment explanation
Indices: 736665--736706 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
736655 CAAGTGAGAA
*
736665 AAAAAAGAGAG
1 AAAAAAGAAAG
*
736676 AAAAAAGGAAG
1 AAAAAAGAAAG
736687 -AAAAAGAAAG
1 AAAAAAGAAAG
736697 AAAAAAGAAA
1 AAAAAAGAAA
736707 AATTAGGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:739934 original size:19 final size:18
Alignment explanation
Indices: 739909--739966 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
739899 GTCTATCAAT
739909 ACATTGTATCGATACATG
1 ACATTGTATCGATACATG
739927 ATCATTGTATCGATACATGG
1 A-CATTGTATCGATACAT-G
739947 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
739966 A
1 A
739967 AACTAGCAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.51
20 17 0.46
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (18 bp):
ACATTGTATCGATACATG
Found at i:739955 original size:20 final size:20
Alignment explanation
Indices: 739910--739965 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
739900 TCTATCAATA
739910 CATTGTATCGATACAT-GAT
1 CATTGTATCGATACATGGAT
739929 CATTGTATCGATACATGGA-
1 CATTGTATCGATACATGGAT
739948 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
739966 AAACTAGCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:740019 original size:20 final size:20
Alignment explanation
Indices: 739994--740044 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
739984 CTACCATTGT
*
739994 TTGTATCGATATATGGT-ACA
1 TTGTATCGATATATGATGA-A
740014 TTGTATCGATATATGATGAA
1 TTGTATCGATATATGATGAA
740034 TTGTATCGATA
1 TTGTATCGATA
740045 CATTGCTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (20 bp):
TTGTATCGATATATGATGAA
Found at i:741668 original size:12 final size:12
Alignment explanation
Indices: 741651--741676 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
741641 TGAAAAGGAA
741651 GATGATAATGAT
1 GATGATAATGAT
741663 GATGATAATGAT
1 GATGATAATGAT
741675 GA
1 GA
741677 CTCGGATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGATAATGAT
Found at i:742297 original size:21 final size:21
Alignment explanation
Indices: 742273--742312 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
742263 GATATTAAAA
*
742273 AATTGGCTAATGA-AAATAATG
1 AATTAGCTAA-GACAAATAATG
742294 AATTAGCTAAGACAAATAA
1 AATTAGCTAAGACAAATAA
742313 AAACTTGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.53, C:0.07, G:0.15, T:0.25
Consensus pattern (21 bp):
AATTAGCTAAGACAAATAATG
Found at i:746378 original size:21 final size:22
Alignment explanation
Indices: 746343--746384 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
746333 ACAAATTTCC
*
746343 TCATTTTTACTTC-AAATCACT
1 TCATTTTTACATCAAAATCACT
*
746364 TCATTTTTTCATCAAAATCAC
1 TCATTTTTACATCAAAATCAC
746385 CAACAAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.45
Consensus pattern (22 bp):
TCATTTTTACATCAAAATCACT
Found at i:748771 original size:13 final size:13
Alignment explanation
Indices: 748753--748779 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
748743 ACATTATGCT
748753 TTGTATCGATACA
1 TTGTATCGATACA
748766 TTGTATCGATACA
1 TTGTATCGATACA
748779 T
1 T
748780 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:748777 original size:33 final size:32
Alignment explanation
Indices: 748735--748798 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
748725 ACACCCAGAA
* *
748735 GTATCGATACATTATGCTTTGTATCGATACATT
1 GTATCGATACATGAT-CATTGTATCGATACATT
748768 GTATCGATACATGATCATTGTATCGATACAT
1 GTATCGATACATGATCATTGTATCGATACAT
748799 GGACAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (32 bp):
GTATCGATACATGATCATTGTATCGATACATT
Found at i:748788 original size:19 final size:18
Alignment explanation
Indices: 748763--748820 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
748753 TTGTATCGAT
748763 ACATTGTATCGATACATG
1 ACATTGTATCGATACATG
748781 ATCATTGTATCGATACATGG
1 A-CATTGTATCGATACAT-G
748801 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
748820 A
1 A
748821 AACTGGCAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.51
20 17 0.46
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (18 bp):
ACATTGTATCGATACATG
Found at i:748809 original size:20 final size:20
Alignment explanation
Indices: 748764--748819 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
748754 TGTATCGATA
748764 CATTGTATCGATACAT-GAT
1 CATTGTATCGATACATGGAT
748783 CATTGTATCGATACATGGA-
1 CATTGTATCGATACATGGAT
748802 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
748820 AAACTGGCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:751861 original size:18 final size:18
Alignment explanation
Indices: 751840--751874 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
751830 AAAAACAAGC
751840 GAAAA-AAAAACAGAAAAA
1 GAAAAGAAAAA-AGAAAAA
751858 GAAAAGAAAAAAGAAAA
1 GAAAAGAAAAAAGAAAA
751875 TTTAGTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (18 bp):
GAAAAGAAAAAAGAAAAA
Found at i:751866 original size:23 final size:23
Alignment explanation
Indices: 751822--751869 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
751812 AAGGATTTGT
**
751822 AAAAACAAAAAAACAAGCGAAAA
1 AAAAACAAAAAAACAAAAGAAAA
* *
751845 AAAAACAGAAAAAGAAAAGAAAA
1 AAAAACAAAAAAACAAAAGAAAA
751868 AA
1 AA
751870 GAAAATTTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.81, C:0.08, G:0.10, T:0.00
Consensus pattern (23 bp):
AAAAACAAAAAAACAAAAGAAAA
Found at i:752225 original size:15 final size:14
Alignment explanation
Indices: 752205--752263 Score: 68
Period size: 15 Copynumber: 4.1 Consensus size: 14
752195 TTCTCTAAAT
752205 AAGAAACAAAAAAAA
1 AAGAAA-AAAAAAAA
*
752220 AAG--AAAAAGAAA
1 AAGAAAAAAAAAAA
752232 AAGAAGAAAAAAAAA
1 AAGAA-AAAAAAAAA
752247 AAGAAAAAAGAAAAA
1 AAGAAAAAA-AAAAA
752262 AA
1 AA
752264 CATGAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
12 10 0.26
13 1 0.03
14 4 0.11
15 23 0.61
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAAAAA
Found at i:752277 original size:1 final size:1
Alignment explanation
Indices: 752212--752263 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
752202 AATAAGAAAC
* * * * * *
752212 AAAAAAAAAAGAAAAAGAAAAAGAAGAAAAAAAAAAAGAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
752264 CATGAAATAA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (1 bp):
A
Found at i:752801 original size:13 final size:13
Alignment explanation
Indices: 752783--752808 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
752773 TACAGCAAGT
752783 ATGTATCGATACA
1 ATGTATCGATACA
752796 ATGTATCGATACA
1 ATGTATCGATACA
752809 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:755061 original size:21 final size:21
Alignment explanation
Indices: 755028--755072 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
755018 TTGCAAGTTG
*
755028 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
755050 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
755070 AAA
1 AAA
755073 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:756894 original size:15 final size:15
Alignment explanation
Indices: 756874--756904 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
756864 ATAAAATGTC
*
756874 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
756889 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
756904 C
1 C
756905 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:759002 original size:20 final size:20
Alignment explanation
Indices: 758923--759002 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
758913 AATGTCCAAA
*
758923 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
758943 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
758968 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
758988 TTGTATCGATACATT
1 ATGTATCGATACATT
759003 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:759006 original size:13 final size:13
Alignment explanation
Indices: 758988--759026 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
758978 ACATTTTTCT
758988 TTGTATCGATACA
1 TTGTATCGATACA
759001 TTGTATCGATACA
1 TTGTATCGATACA
*
759014 CTGTATCGATACA
1 TTGTATCGATACA
759027 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:759172 original size:21 final size:21
Alignment explanation
Indices: 759148--759194 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
759138 AAATCTTTTG
759148 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
759169 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
759189 CAAAAT
1 CAAAAT
759195 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:759191 original size:20 final size:19
Alignment explanation
Indices: 759150--759192 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
759140 ATCTTTTGCA
759150 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
759170 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
759190 AAA
1 AAA
759193 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:761594 original size:13 final size:13
Alignment explanation
Indices: 761576--761601 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
761566 TACAGCAAGT
761576 ATGTATCGATACA
1 ATGTATCGATACA
761589 ATGTATCGATACA
1 ATGTATCGATACA
761602 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:763398 original size:44 final size:43
Alignment explanation
Indices: 763260--763408 Score: 124
Period size: 44 Copynumber: 3.4 Consensus size: 43
763250 TACTACATTA
* * *
763260 GCATTTGCATCT-TTTCAAATGCATTTATCATTCTATTGATGATT
1 GCATTTGCAT-TATTTCAAATGCATTT-GCATTTTATTGATGCTT
* ** *
763304 GCATTTGCATTATCTCACCTACATTTGCATTTTA--GATGACATT
1 GCATTTGCATTATTTCAAATGCATTTGCATTTTATTGATG-C-TT
* * *
763347 GGTATTTGCATTATTTCATATGCATTTGCCTTTTTATTGATGCTT
1 -GCATTTGCATTATTTCAAATGCATTTG-CATTTTATTGATGCTT
*
763392 GCATTTGCATCATTTCA
1 GCATTTGCATTATTTCA
763409 CACACATCTA
Statistics
Matches: 83, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
41 4 0.05
43 9 0.11
44 57 0.69
45 8 0.10
46 1 0.01
47 4 0.05
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (43 bp):
GCATTTGCATTATTTCAAATGCATTTGCATTTTATTGATGCTT
Found at i:763770 original size:79 final size:79
Alignment explanation
Indices: 763637--763835 Score: 229
Period size: 79 Copynumber: 2.5 Consensus size: 79
763627 AATAATGGGG
* * * * ** *
763637 TTGGAGTATCCCCTTGAAAATAACGGGATTGGAGTATCCTCGGTTGTGAAAAATCGATGA-TTAG
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATCAAT-ATTTAG
*
763701 GAAATAAAATCGGGA
65 GAAATAAAACCGGGA
* * *
763716 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAATATCCCCAATTGTGAGAAATCAATATTTTGG
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATCAATATTTAGG
* * *
763781 GAATAAAGCCGGGG
66 AAATAAAACCGGGA
* **
763795 TTAGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCC
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCC
763836 GATGAAATAA
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 1 0.01
79 100 0.99
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATCAATATTTAGG
AAATAAAACCGGGA
Found at i:763909 original size:52 final size:51
Alignment explanation
Indices: 763850--763983 Score: 196
Period size: 52 Copynumber: 2.6 Consensus size: 51
763840 AAATAACGAG
* *
763850 GTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGATG-TTTTGGAAATAAAATCGGA
* * * *
763902 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATT-ATGAAAAATTGATGTTTTGGAAATAAAATCGGA
763954 GTTGGAGTATCCCCGATTATGAAAAATTGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGA
763984 GAAACTTAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
51 9 0.12
52 53 0.74
53 10 0.14
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCGGA
Found at i:766367 original size:21 final size:21
Alignment explanation
Indices: 766341--766381 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
766331 ACAAAGATCG
766341 ATGTATCGATACATTTCCTTA
1 ATGTATCGATACATTTCCTTA
766362 ATGTATCGATACATTTCCTT
1 ATGTATCGATACATTTCCTT
766382 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATTTCCTTA
Found at i:766440 original size:31 final size:32
Alignment explanation
Indices: 766398--766469 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
766388 AGCTTCGTAG
766398 CGATACATTGTATCGATACAA-ACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
* *
766429 TGATACGTTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
766461 CGATACATT
1 CGATACATT
766470 TACGGTTTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 19 0.53
32 17 0.47
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:768306 original size:25 final size:27
Alignment explanation
Indices: 768272--768322 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
768262 ATCAAAATTT
768272 CCATATTT-GGGG-TACTCCAACCTTA
1 CCATATTTGGGGGATACTCCAACCTTA
*
768297 CCATCTTTGGGGGGATACTCCAACCT
1 CCATATTT-GGGGGATACTCCAACCT
768323 CGATTTTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
27 4 0.18
28 11 0.50
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (27 bp):
CCATATTTGGGGGATACTCCAACCTTA
Found at i:775286 original size:20 final size:20
Alignment explanation
Indices: 775261--775324 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
775251 AAAAAAACAG
775261 AATGTATTGATACATTGAAA
1 AATGTATTGATACATTGAAA
*
775281 AATGTATTGATACATTCAAA
1 AATGTATTGATACATTGAAA
* *
775301 CATATATTGATACATTGAAA
1 AATGTATTGATACATTGAAA
775321 AATG
1 AATG
775325 AATCGATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (20 bp):
AATGTATTGATACATTGAAA
Found at i:775332 original size:20 final size:20
Alignment explanation
Indices: 775261--775332 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
775251 AAAAAAACAG
*
775261 AATGTATTGATACATTGAAA
1 AATGAATTGATACATTGAAA
* *
775281 AATGTATTGATACATTCAAA
1 AATGAATTGATACATTGAAA
*
775301 CAT-ATATTGATACATTGAAA
1 AATGA-ATTGATACATTGAAA
*
775321 AATGAATCGATA
1 AATGAATTGATA
775333 TATCTAGGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
20 43 0.98
21 1 0.02
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.33
Consensus pattern (20 bp):
AATGAATTGATACATTGAAA
Found at i:776571 original size:52 final size:51
Alignment explanation
Indices: 776488--776672 Score: 136
Period size: 52 Copynumber: 3.4 Consensus size: 51
776478 GAATGATATG
* * * **
776488 CCAATATGTTGATTCAAGTCCAACGATATTGGACTTAAAGATGACAAAGGCA
1 CCAATGTGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGACAAAGG-A
* * * *
776540 CCAATGTGCTGATTCAAGGCCAGTGACATTGGGCTTAAAGATGAGAAGAATGA
1 CCAATGTGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGA-CA-AAGGA
* * *
776593 CAAATGTGTCGATATGCTAATTCAAAGCCAGTGATATTGGACTTAAAGATGACAAAGGTG
1 CCAATGTG-C----TG---ATTCAAGGCCAGTGATATTGGACTTAAAGATGACAAAGG-A
* *
776653 CCAATTTGTTGATTCAAGGC
1 CCAATGTGCTGATTCAAGGC
776673 TATCGACAGT
Statistics
Matches: 102, Mismatches: 20, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
52 45 0.44
53 9 0.09
54 4 0.04
55 2 0.02
58 2 0.02
59 3 0.03
60 7 0.07
61 30 0.29
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
CCAATGTGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGACAAAGGA
Found at i:776905 original size:32 final size:33
Alignment explanation
Indices: 776795--776910 Score: 119
Period size: 34 Copynumber: 3.5 Consensus size: 33
776785 AAGGAGATGT
* *
776795 CACCAACTTGTGTGGGCTTTAGAAAAGAGGTTAC
1 CACCAACTTGTGTGGGCTTTAGAGAAGAGG-TGC
* * *
776829 CGA-CAGCTTTTGTGGGCTTTAGAGAAGAGATTGC
1 C-ACCAACTTGTGTGGGCTTTAGAGAAGAG-GTGC
* * *
776863 AACCAGCTTGTGTGGGCTATAGAGAA-AGGTGC
1 CACCAACTTGTGTGGGCTTTAGAGAAGAGGTGC
776895 CACCAACTTGTGTGGG
1 CACCAACTTGTGTGGG
776911 TGTAAAAGGA
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
32 17 0.25
33 3 0.04
34 47 0.69
35 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (33 bp):
CACCAACTTGTGTGGGCTTTAGAGAAGAGGTGC
Found at i:776944 original size:28 final size:28
Alignment explanation
Indices: 776887--777485 Score: 358
Period size: 28 Copynumber: 21.1 Consensus size: 28
776877 GGCTATAGAG
** * *
776887 AAAGG-TGCCACCAACTTGTGTGGGTGTA
1 AAAGGATGCCACTGACTTGTG-GGCTTTA
* *
776915 AAAGGATGCCACTAACTTGTGTGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* * *
776943 AAAGGATGCCACTAACTTGTGGACTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* * * *
776971 AAAGGGTGCCATTGACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* * * * * *
776999 AAATGAAGCCACTAACTTGTAGACTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* * *
777027 AAATGAAGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* * * *
777055 AAAGGGTGCCATTGACTAGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* * *
777083 GAAGGGTGCCACTGACTCGTGGGCTTTGAAAA
1 AAAGGATGCCACTGACTTGTGGGCTTT----A
* * **
777115 AAAAGATACCACCAACTTGTGTGGGCTTTGA
1 AAAGGATGCCACTGAC-T-TGTGGGCTTT-A
** *
777146 AAAGG-TGCCGTTGACTTGTTGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTT-A
* * * *
777174 AAA-GATGCCACTGACTCGTGAGATTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* * *
777201 AAAGGATACCACTTACTTATGGGCTTT-
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* ** *
777228 ---GAATGCCACTGACTTGTGCCCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
* *
777253 AAAGGATGCCACTAACATGTGGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTT-A
* *
777282 AAAGG-TGCCACCGACTTATGGGCTTTAA
1 AAAGGATGCCACTGACTTGTGGGCTTT-A
**
777310 AAAGG-TGTAACT-AGCTTGTGTGGGCTTTAGA
1 AAAGGATGCCACTGA-C-T-TGTGGGCTTT--A
* *
777341 AGAAGGCTGCCATTGACTTGTGGGCTTTGA
1 A-AAGGATGCCACTGACTTGTGGGCTTT-A
** * *
777371 AAAGG-TGCCGTTGACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
777398 AAAGGATGCCACTGACTTGTGGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTT-A
* * * *
777427 AAAGG-TGCCATTGACATGTAGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTA
*
777454 AAAGGATGCCACTAACTTGTGGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTT-A
777483 AAA
1 AAA
777486 AGGTGTCGTA
Statistics
Matches: 445, Mismatches: 101, Indels: 49
0.75 0.17 0.08
Matches are distributed among these distances:
24 18 0.04
27 15 0.03
28 314 0.71
29 33 0.07
30 17 0.04
31 17 0.04
32 15 0.03
33 6 0.01
34 10 0.02
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTA
Found at i:777015 original size:84 final size:84
Alignment explanation
Indices: 776915--777484 Score: 445
Period size: 84 Copynumber: 6.7 Consensus size: 84
776905 TGTGGGTGTA
* * *
776915 AAAGGATGCCACTAACTTGTGTGCTTTAAAAGGATGCCACTAACTTGTGGACTTTGAAAGGGTGC
1 AAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGC
* *
776980 CATTGACTTATGGGCTTTG
66 CACTGACTTGTGGGCTTTG
* * * * * * * * *
776999 AAATGAAGCCACTAACTTGTAGACTTTGAAATGAAGCCACTGACTTGTGGGCTTTGAAAGGGTGC
1 AAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGC
* *
777064 CATTGACTAGTGGGCTTTG
66 CACTGACTTGTGGGCTTTG
* * * * * *
777083 GAAGGGTGCCACTGACTCGTGGGCTTTGAAAAAAAAGATACCACCAACTTGTGTGGGCTTTGAAA
1 AAAGGATGCCACTGACTTGTGGGCTTT----AAAAGGATGCCACTAAC-T-TGTGGGCTTTGAAA
* ** *
777148 AGGTGCCGTTGACTTGTTGGCTTTG
60 GGGTGCCACTGACTTGTGGGCTTTG
* * * * * * * *
777173 AAAAGATGCCACTGACTCGTGAGATTTGAAAGGATACCACTTACTTATGGGCTTTG-AA---TGC
1 AAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGC
**
777234 CACTGACTTGTGCCCTTTG
66 CACTGACTTGTGGGCTTTG
* * ** * * *
777253 AAAGGATGCCACTAACATGTGGGCTTTGAAAAGG-TGCCACCGACTTATGGGCTTTAAAAAGGTG
1 AAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTG
**
777317 TAACT-AGCTTGTGTGGGCTTTAG
65 CCACTGA-C-T-TGTGGGCTTT-G
* * ** * * *
777340 AAGAAGGCTGCCATTGACTTGTGGGCTTTGAAAAGG-TGCCGTTGACTTATGGGCTTTGAAAGGA
1 -A-AAGGATGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGG
777404 TGCCACTGACTTGTGGGCTTTG
63 TGCCACTGACTTGTGGGCTTTG
* * * *
777426 AAAAGG-TGCCATTGACATGTAGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA
1 -AAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAA
777485 AAGGTGTCGT
Statistics
Matches: 388, Mismatches: 79, Indels: 38
0.77 0.16 0.08
Matches are distributed among these distances:
80 56 0.14
81 7 0.02
83 8 0.02
84 147 0.38
85 6 0.02
86 24 0.06
87 11 0.03
88 13 0.03
89 58 0.15
90 58 0.15
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (84 bp):
AAAGGATGCCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGC
CACTGACTTGTGGGCTTTG
Found at i:777172 original size:174 final size:170
Alignment explanation
Indices: 776915--777284 Score: 398
Period size: 174 Copynumber: 2.2 Consensus size: 170
776905 TGTGGGTGTA
* * * * *
776915 AAAGGATGCCACTAACTTGTGTGCTTT----AAAAGGATGCCACTAAC-T-TGTGGACTTTGAAA
1 AAAGGATGCCACTAACATGTGGGCTTTGAAAAAAAAGATACCACCAACTTGTGTGGACTTTGAAA
* * * *
776974 GGGTGCCATTGACTTATGGGCTTTGAAATGAAGCCACTAACTTGT-AGACTTTGAAATGA-AGCC
66 AGGTGCCATTGACTTATGGGCTTTGAAAAGAAGCCACTAACTCGTGAGA-TTTGAAAGGATA-CC
* * **
777037 ACTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTAGTGGGCTTTG
129 ACTGACTTATGGGCTTTG-AA---TGCCACTGACTAGTGCCCTTTG
* * * *
777083 GAAGGGTGCCACTGAC-TCGTGGGCTTTGAAAAAAAAGATACCACCAACTTGTGTGGGCTTTGAA
1 AAAGGATGCCACTAACAT-GTGGGCTTTGAAAAAAAAGATACCACCAACTTGTGTGGACTTTGAA
* * * * *
777147 AAGGTGCCGTTGACTTGTTGGCTTTGAAAAGATGCCACTGACTCGTGAGATTTGAAAGGATACCA
65 AAGGTGCCATTGACTTATGGGCTTTGAAAAGAAGCCACTAACTCGTGAGATTTGAAAGGATACCA
* *
777212 CTTACTTATGGGCTTTGAATGCCACTGACTTGTGCCCTTTG
130 CTGACTTATGGGCTTTGAATGCCACTGACTAGTGCCCTTTG
777253 AAAGGATGCCACTAACATGTGGGCTTTGAAAA
1 AAAGGATGCCACTAACATGTGGGCTTTGAAAA
777285 GGTGCCACCG
Statistics
Matches: 166, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
167 1 0.01
168 21 0.13
170 45 0.27
171 1 0.01
172 14 0.08
173 3 0.02
174 77 0.46
175 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (170 bp):
AAAGGATGCCACTAACATGTGGGCTTTGAAAAAAAAGATACCACCAACTTGTGTGGACTTTGAAA
AGGTGCCATTGACTTATGGGCTTTGAAAAGAAGCCACTAACTCGTGAGATTTGAAAGGATACCAC
TGACTTATGGGCTTTGAATGCCACTGACTAGTGCCCTTTG
Found at i:777240 original size:52 final size:52
Alignment explanation
Indices: 777178--777282 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 52
777168 CTTTGAAAAG
* * *
777178 ATGCCACTGACTCGTGAGATTTGAAAGGATACCACTTACTTATGGGCTTTGA
1 ATGCCACTGACTCGTGACATTTGAAAGGATACCACTAACATATGGGCTTTGA
* * * * *
777230 ATGCCACTGACTTGTGCCCTTTGAAAGGATGCCACTAACATGTGGGCTTTGA
1 ATGCCACTGACTCGTGACATTTGAAAGGATACCACTAACATATGGGCTTTGA
777282 A
1 A
777283 AAGGTGCCAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (52 bp):
ATGCCACTGACTCGTGACATTTGAAAGGATACCACTAACATATGGGCTTTGA
Found at i:777485 original size:56 final size:56
Alignment explanation
Indices: 776914--777490 Score: 459
Period size: 56 Copynumber: 10.1 Consensus size: 56
776904 GTGTGGGTGT
* * * * *
776914 AAAAGGATGCCACTAACTTGTGTGCTTTAAAAGGATGCCACTAACTTGTGGACTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * * * *
776971 AAAGGGTGCCATTGACTTATGGGCTTTGAAATGAAGCCACTAACTTGTAGACTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* ** * * *
777027 AAATGAAGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTAGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * **
777083 GAAGGGTGCCACTGACTCGTGGGCTTTGAAAAAAAAGATACCACCAACTTGTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG----AAAGGATGCCACTGAC-T-TGTGGGCTTTG
** * * * * *
777145 AAAAGGTGCCGTTGACTTGTTGGCTTTGAAAAGATGCCACTGACTCGTGAGATTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* * * **
777201 -AAAGGATACCACTTACTTATGGGCTTTG--A--ATGCCACTGACTTGTGCCCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
777253 -AAAGGATGCCACTAACATGTGGGCTTTGAAAAGG-TGCCACCGACTTATGGGCTTTA
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTG
** * *
777309 AAAAGGTGTAACT-AGCTTGTGTGGGCTTTAGAAGAAGGCTGCCATTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGA-C-T-TGTGGGCTTT-G-A-AAGGATGCCACTGACTTGTGGGCTTTG
** *
777370 AAAAGGTGCCGTTGACTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
777426 AAAAGGTGCCATTGACATGTAGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
777482 AAAAAGGTG
1 -AAAAGGTG
777491 TCGTATTGAC
Statistics
Matches: 415, Mismatches: 84, Indels: 42
0.77 0.16 0.08
Matches are distributed among these distances:
52 43 0.10
54 1 0.00
55 7 0.02
56 231 0.56
57 20 0.05
58 24 0.06
59 12 0.03
60 15 0.04
61 29 0.07
62 33 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (56 bp):
AAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:777535 original size:25 final size:23
Alignment explanation
Indices: 777504--777566 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 23
777494 TATTGACAAA
*
777504 AAATTCTTGACAAAGTTTTTGACT
1 AAATTCTTGACAAAGTTCTTGA-T
*
777528 AACATTCTCGACAAAAGTTCTTGAT
1 AA-ATTCTTGAC-AAAGTTCTTGAT
*
777553 AATTTCTTGACAAA
1 AAATTCTTGACAAA
777567 TGGCAAATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 3 0.09
24 9 0.27
25 11 0.33
26 10 0.30
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (23 bp):
AAATTCTTGACAAAGTTCTTGAT
Found at i:791744 original size:20 final size:20
Alignment explanation
Indices: 791719--791793 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
791709 AAAGAAATAG
*
791719 AATGTATTGATACATTGAAA
1 AATGTATCGATACATTGAAA
** * *
791739 AATGTATCGATGTATTCATA
1 AATGTATCGATACATTGAAA
* *
791759 CATGTATCGTTACATTGAAA
1 AATGTATCGATACATTGAAA
*
791779 AATGTATTGATACAT
1 AATGTATCGATACAT
791794 CTAGGTAAAA
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:801375 original size:51 final size:51
Alignment explanation
Indices: 801318--801437 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
801308 TCAGAAATAA
* * * *
801318 CGGGGTTGGAGTATCCCTAATGATGGAAAATCGATGTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCAATGATGGAAAATCAATGTTTTAGAAATAAAAC
*
801369 CGGGGTTGGAGTATCCCCAATGGTGGAAAATCAATGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCAATGATGGAAAATCAATGTTTTAGAAATAAAAC
*
801420 CGAGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
801438 TCAGAAATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.27
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCAATGATGGAAAATCAATGTTTTAGAAATAAAAC
Found at i:805718 original size:52 final size:52
Alignment explanation
Indices: 805557--805846 Score: 380
Period size: 52 Copynumber: 5.7 Consensus size: 52
805547 TGTTAAAGAT
* * * *
805557 GCCAATATGCTGATTTAAGGCCAGTGACT-TTGGACTTAAAGGTG---AAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTAAAGATGACAAAGGC
* * * *
805606 GCTAATGTGCTGATTCAAGGCCAGCGACATTGGA-TTAAAGATAACAAAGGC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
805657 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
* *
805709 GCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATG---AAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
* * * *
805758 GCCAATGTGTTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
*
805810 GCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
805847 GTGCCAATGT
Statistics
Matches: 208, Mismatches: 25, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
48 7 0.03
49 71 0.34
51 35 0.17
52 95 0.46
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (52 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
Found at i:805921 original size:48 final size:47
Alignment explanation
Indices: 805847--806123 Score: 318
Period size: 48 Copynumber: 5.9 Consensus size: 47
805837 TATTGGACTT
*
805847 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAG
* *
805895 GTACCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAG
* *
805943 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT--------
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAG
* *
805982 GTGCCAATGTGCTGATTCACGGCCAGCGACATTGGTCTTAAAGATAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-AAG
** * *
806030 GTGCCAATATGCTGATTCAAGGCCAGCGATGTTGGACTCAAGATGGTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAA-A--G-AAAG
* *
806081 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
806124 GTGCCACAGA
Statistics
Matches: 198, Mismatches: 18, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
39 35 0.18
48 117 0.59
49 1 0.01
50 1 0.01
51 43 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (47 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAAAG
Found at i:805983 original size:135 final size:136
Alignment explanation
Indices: 805709--806119 Score: 583
Period size: 135 Copynumber: 3.0 Consensus size: 136
805699 TGACAAAGGC
* * * * * * *
805709 GCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCCAATGTGTTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTC
* * *
805774 AAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCAATA
65 AAGGCCAGCGACATTGGACTT--AGATGAC-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
805839 TTGGACTTGT
127 TTGGACTTGT
*
805849 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTACCAATATGCTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
*
805914 AGGCCAGCGACATTGGTCTTAGA-GACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
66 AGGCCAGCGACATTGGACTTAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
*
805978 GCTTGT
131 ACTTGT
* *
805984 GCCAATGTGCTGATTCACGGCCAGCGACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
** *
806049 AGGCCAGCGATGTTGGACTCAAGATGGTA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
66 AGGCCAGCGACATTGGACT-TAGAT-G-ACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
806113 TGGACTT
128 TGGACTT
806120 AAAGGTGCCA
Statistics
Matches: 246, Mismatches: 21, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
135 119 0.48
136 6 0.02
137 3 0.01
138 42 0.17
139 38 0.15
140 38 0.15
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (136 bp):
GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCA
AGGCCAGCGACATTGGACTTAGATGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
ACTTGT
Found at i:805989 original size:87 final size:87
Alignment explanation
Indices: 805898--806064 Score: 289
Period size: 87 Copynumber: 1.9 Consensus size: 87
805888 AGACAAGGTA
*
805898 CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
805963 GGCCAGCGATATTGGGCTTGTG
66 GGCCAGCGATATTGGGCTTGTG
* * *
805985 CCAATGTGCTGATTCACGGCCAGCGACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
*
806050 GGCCAGCGATGTTGG
66 GGCCAGCGATATTGG
806065 ACTCAAGATG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 75 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (87 bp):
CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
GGCCAGCGATATTGGGCTTGTG
Found at i:806221 original size:33 final size:32
Alignment explanation
Indices: 806184--806756 Score: 209
Period size: 34 Copynumber: 17.8 Consensus size: 32
806174 GCTTGAAAGG
*
806184 GAAAAGGGTACCACGGAATCGTGGACTTAAAAA
1 GAAAA-GGTGCCACGGAATCGTGGACTTAAAAA
**
806217 GAAAAGGTGCCAC-GAAGTTATGGACTTAAAAA
1 GAAAAGGTGCCACGGAA-TCGTGGACTTAAAAA
* * * *
806249 GAACAACGTGCCATGGAGTCGTGGACTTAAAAG
1 GAA-AAGGTGCCACGGAATCGTGGACTTAAAAA
** * *
806282 GAAAAATATGCCACGGAGTTGTGGACTT-AAAA
1 G-AAAAGGTGCCACGGAATCGTGGACTTAAAAA
** * * *
806314 G----GGTGCCATAGAGTTGTGGACTTAAAAG
1 GAAAAGGTGCCACGGAATCGTGGACTTAAAAA
* * *
806342 GAAAAAGAGTGCCATGGAATTGTGGGCTTTAAAAA
1 G-AAAAG-GTGCCACGGAATCGTGGAC-TTAAAAA
*
806377 GAAAAAGGTGCCACGGAGAT-ATGGACTT-AAAA
1 G-AAAAGGTGCCACGGA-ATCGTGGACTTAAAAA
* * *
806409 G----GGTGCCACGGAGTTGTGGACTTAAAAG
1 GAAAAGGTGCCACGGAATCGTGGACTTAAAAA
* * * * *
806437 GAAAAAGAGTGCCATGGAGTTGTGGGCTTAAAAG
1 G-AAAAG-GTGCCACGGAATCGTGGACTTAAAAA
* * * * *
806471 GAAAAAGAGTGCCATGCAGTTGTGGGCTTTAAAAA
1 G-AAAAG-GTGCCACGGAATCGTGGAC-TTAAAAA
* * * *
806506 GAAAAAAGGTGCCACAGAGTTGTGGACTTAAAAG
1 G--AAAAGGTGCCACGGAATCGTGGACTTAAAAA
* * * * *
806540 GAAAAAGATACCACAGAGTTGTGGACTT-AAAA
1 G-AAAAGGTGCCACGGAATCGTGGACTTAAAAA
* * * * *
806572 G----GGTACCACAGAGTTGTGGACTTAAAAG
1 GAAAAGGTGCCACGGAATCGTGGACTTAAAAA
* * * *
806600 GAAACAGATGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAA-AGGTGCCACGGAATCGTGGAC-TTAAAAA
* *
806634 GAAAAAGGTGCCACGGAGTTGTGGACTT-AAAA
1 G-AAAAGGTGCCACGGAATCGTGGACTTAAAAA
* * *
806666 G----GGTGCCACAGAGTTGTGGACTTAAAAGAA
1 GAAAAGGTGCCACGGAATCGTGGACTT-AAA-AA
* * * * *
806696 AAAAAGGTTCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAGGTGCCACGGAATCGTGGAC-TTAAAAA
* *
806729 GAAAAAGGTGCCACGGAGTTGTGGACTT
1 G-AAAAGGTGCCACGGAATCGTGGACTT
806757 TGAGAAGAGA
Statistics
Matches: 442, Mismatches: 58, Indels: 80
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.00
27 78 0.18
28 12 0.03
29 2 0.00
30 2 0.00
31 3 0.01
32 41 0.09
33 97 0.22
34 158 0.36
35 42 0.10
36 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (32 bp):
GAAAAGGTGCCACGGAATCGTGGACTTAAAAA
Found at i:806354 original size:34 final size:34
Alignment explanation
Indices: 806310--807037 Score: 414
Period size: 34 Copynumber: 22.8 Consensus size: 34
806300 TTGTGGACTT
* **
806310 AAAAGGGTGCCATAGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * * *
806344 AAAAGAGTGCCATGGAATTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGA
* *
806379 AAAAG-GTGCCACGGAGATATGGACTTAAAA-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
806410 ----G-GTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
806439 AAAAGAGTGCCATGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * * *
806473 AAAAGAGTGCCATGCAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGA
*
806508 AAAA-AGGTGCCACAGAGTTGTGGACTTAAAAGGA
1 AAAAGA-GTGCCACGGAGTTGTGGACTTAAAAGGA
* *
806542 AAAAGA-TACCACAGAGTTGTGGACTTAAAA-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
806573 ----G-GTACCACAGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
806602 AACAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGA
806636 AAAAG-GTGCCACGGAGTTGTGGACTTAAAA-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
806667 ----G-GTGCCACAGAGTTGTGGACTTAAAA-GA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * * *
806695 AAAAAAGGTTCCACGGAGTTGTGGGCTTTAAAAAGA
1 AAAAGA-GTGCCACGGAGTTGTGGAC-TTAAAAGGA
**
806731 AAAAG-GTGCCACGGAGTTGTGGACTT-TGA-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * ** **
806761 AAGAGATTGCCACTAAGTTGTGGACTT-TGA-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* **
806792 AAAAGAGATGCCACTGAGTTGTGGACTT-TGA-G-
1 AAAAGAG-TGCCACGGAGTTGTGGACTTAAAAGGA
* * * ** *
806824 AAGAGA-TGCCACTGAGTCGTGGACTTTGAAGAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * * **
806857 AAAAGA-TGGCACTGAGTCGTGGACTTGGAA-GA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
806889 AAAGGA-TGCCACTGAGTCGTGGACTT---A-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
** **
806917 AAAAGAGATGCCACTAAGTTGTGGACTTTGAA-G-
1 AAAAGAG-TGCCACGGAGTTGTGGACTTAAAAGGA
* * **
806950 AAAAGA-TGCCACTGAGTCGTGGACTTGGAA-GA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
806982 AAAAGA-TGCCACTGAGTCGTGGACTT---AGAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
807012 AAAAGA-TGCCACTGAGTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
807038 TGAAGAAAAG
Statistics
Matches: 588, Mismatches: 64, Indels: 88
0.79 0.09 0.12
Matches are distributed among these distances:
27 75 0.13
28 7 0.01
29 3 0.01
30 67 0.11
31 51 0.09
32 83 0.14
33 89 0.15
34 160 0.27
35 47 0.08
36 6 0.01
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.21
Consensus pattern (34 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:806391 original size:95 final size:94
Alignment explanation
Indices: 806113--806693 Score: 437
Period size: 95 Copynumber: 6.1 Consensus size: 94
806103 CCAGCGATAT
* * ** * *
806113 TGGACTT-AAA-GGTGCCACAGAGTTGTGGACTT-ATAGGAAAAA-AGATACCACAGAGGTATGG
1 TGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAG-TGCCATGGAGTTGTGG
* * * * *
806174 GCTTGAAAGGGAAAAGGGTACCACGGAATCG
65 GCTT-AAAAGGAAAAAGGTGCCACGGAGTTG
* * * *
806205 TGGACTTAAAAAGAAAAGGTGCCAC-GAAGTTATGGACTTAAAAAGAACAA-CGTGCCATGGAGT
1 TGGACTT-AAAAG----GGTGCCACAG-AGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGT
* * **
806268 CGTGGACTTAAAAGGAAAAATATGCCACGGAGTTG
60 TGTGGGCTTAAAAGGAAAAAGGTGCCACGGAGTTG
* *
806303 TGGACTTAAAAGGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAATTGTGGG
1 TGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGG
* * *
806368 CTTTAAAAAGAAAAAGGTGCCACGGAGATA
66 C-TTAAAAGGAAAAAGGTGCCACGGAGTTG
*
806398 TGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGG
1 TGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGG
* *
806463 CTTAAAAGGAAAAAGAGTGCCATGCAGTTG
66 CTTAAAAGGAAAAAG-GTGCCACGGAGTTG
* * **
806493 TGGGCTTTAAAAAGAAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGA-TACCACAGA
1 TGGAC-TT-AAAAG------GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGA
* * *
806557 GTTGTGGACTTAAAA-G-----GGTACCACAGAGTTG
58 GTTGTGGGCTTAAAAGGAAAAAGGTGCCACGGAGTTG
* * * *
806588 TGGACTTAAAAGGAAACAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAG
1 TGGACTTAAAAGG-----G-TGCCACAGAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCATGGAG
* *
806652 TTGTGGACTTAAAA-G-----GGTGCCACAGAGTTG
59 TTGTGGGCTTAAAAGGAAAAAGGTGCCACGGAGTTG
806682 TGGACTTAAAAG
1 TGGACTTAAAAG
806694 AAAAAAAGGT
Statistics
Matches: 403, Mismatches: 57, Indels: 56
0.78 0.11 0.11
Matches are distributed among these distances:
87 1 0.00
92 8 0.02
93 48 0.12
94 97 0.24
95 114 0.28
96 3 0.01
97 10 0.02
98 27 0.07
99 32 0.08
100 8 0.02
101 1 0.00
102 20 0.05
103 34 0.08
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (94 bp):
TGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGG
CTTAAAAGGAAAAAGGTGCCACGGAGTTG
Found at i:806409 original size:61 final size:61
Alignment explanation
Indices: 806344--806727 Score: 273
Period size: 61 Copynumber: 6.1 Consensus size: 61
806334 CTTAAAAGGA
* * *
806344 AAAAGAGTGCCATGGAATTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGATATGGACTT
1 AAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
* * * * * *
806405 AAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGGCTT
1 AAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGACTT
* *
806466 AAAAGGAAAAAGAGTGCCATGCAGTTGTGGGCTTTAAAAAGAAAAAAGGTGCCACAGAGTTGTGG
1 -------AAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAG-AAAAAGGTGCCACGGAGTTGTGG
806531 ACTT
58 ACTT
* ** * * *
806535 AAAAGGAAAAAGATACCACAGAGTTGTGGAC-TT-AAAAG-----GGTACCACAGAGTTGTGGAC
1 AAAA-G----AG-TGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
806593 TT
60 TT
*
806595 AAAAGGAAACAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
1 AAAA-G----AG-TGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
806660 TT
60 TT
* ** * * * *
806662 AAAAGGGTGCCACAGAGTTGTGGAC-TTAAAAGAAAAAAAGGTTCCACGGAGTTGTGGGCTTT
1 AAAAGAGTGCCATGGAGTTGTGGGCTTTAAAA-AGAAAAAGGTGCCACGGAGTTGTGGAC-TT
806724 AAAA
1 AAAA
806728 AGAAAAAGGT
Statistics
Matches: 263, Mismatches: 35, Indels: 49
0.76 0.10 0.14
Matches are distributed among these distances:
60 67 0.25
61 80 0.30
62 16 0.06
63 1 0.00
66 6 0.02
67 28 0.11
68 34 0.13
69 25 0.10
70 6 0.02
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.21
Consensus pattern (61 bp):
AAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
Found at i:806472 original size:129 final size:128
Alignment explanation
Indices: 806204--807037 Score: 570
Period size: 129 Copynumber: 6.6 Consensus size: 128
806194 CCACGGAATC
* * * * * * *
806204 GTGGACTTAAAAAG-AAAAG-GTGCCACGAAGTTATGGAC-TTAAAAAGAACAACGTGCCATGGA
1 GTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
* * * *
806266 GTCGTGGACTTAAAAGGAAAAATATGCCACGGAGTTGTGGACTTAAAAG-----G-GTGCCATAG
66 GTTGTGGACTTAAAAGG------GTGCCACAGAGTTGTGGACTTAAAAGAAAAAGAGTGCCACAG
806325 AGTT
125 AGTT
* *
806329 GTGGACTTAAAAGGAAAAAGAGTGCCATGGAATTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
1 GTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
* * * **
806394 GATATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTT
66 GTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAA-GAAAAAGAGTGCCACAGAGTT
* * * *
806458 GTGGGCTTAAAAGGAAAAAGAGTGCCATGCAGTTGTGGGCTTTAAAAAGAAAAAAGGTGCCACAG
1 GTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAAAAGGTGCCACGG
* *
806523 AGTTGTGGACTTAAAAGGAAAAAGATACCACAGAGTTGTGGACTTAAAAG-----G-GTACCACA
65 AGTTGTGGACTTAAAAGG-----G-TGCCACAGAGTTGTGGACTTAAAAGAAAAAGAGTGCCACA
806582 GAGTT
124 GAGTT
*
806587 GTGGACTTAAAAGGAAACAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
1 GTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
* * *
806651 GTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAAAGGTTCCACGGAGTT
66 GTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAGA-GTGCCACAGAGTT
* * * * * * * **
806715 GTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGACTTTGAGAAG--AGA-TTGCCACTA
1 GTGGAC-TTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGG
* * ** * *
806776 AGTTGTGGACTTTGAGAAAAGAGATGCCACTGAGTTGTGGACTT-TGAG-AAGAGA-TGCCACTG
65 AGTTGTGGAC-TT---AAAAG-GGTGCCACAGAGTTGTGGACTTAAAAGAAAAAGAGTGCCACAG
*
806838 AGTC
125 AGTT
** * * * * * ** *
806842 GTGGACTTTGAAGAAAAAAGA-TGGCACTGAGTCGTGGAC-TT-GGAAG-AAAAGGATGCCACTG
1 GTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG-TGCCACGG
* * ** *
806903 AGTCGTGGACTTAGAAAAGAGATGCCACTA-AGTTGTGGACTTTGAAG-AAAAGA-TGCCACTGA
65 AGTTGTGGACTT--AAAAG-GGTGCCAC-AGAGTTGTGGACTTAAAAGAAAAAGAGTGCCACAGA
*
806965 GTC
126 GTT
** * * * * * *
806968 GTGGACTTGGAA-GAAAAAGA-TGCCACTGAGTCGTGGAC-TT--AGA-AAAAAGATGCCACTGA
1 GTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
807027 GTTGTGGACTT
66 GTTGTGGACTT
807038 TGAAGAAAAG
Statistics
Matches: 594, Mismatches: 77, Indels: 78
0.79 0.10 0.10
Matches are distributed among these distances:
121 24 0.04
122 25 0.04
123 20 0.03
124 10 0.02
125 71 0.12
126 78 0.13
127 80 0.13
128 77 0.13
129 127 0.21
130 38 0.06
131 20 0.03
135 2 0.00
136 22 0.04
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.21
Consensus pattern (128 bp):
GTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
GTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAGAGTGCCACAGAGTT
Found at i:806653 original size:94 final size:93
Alignment explanation
Indices: 806405--806819 Score: 413
Period size: 95 Copynumber: 4.3 Consensus size: 93
806395 ATATGGACTT
* * * *
806405 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGGCTTAAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGACTTAAAA
* *
806470 GGAAAAAGAGTGCCA-TGCAGTTGTGGGCTTTAAAAAGA
65 -G-----G-GTGCCACAG-AGTTGTGGAC-TT-AAAAGA
* * * * *
806508 AAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATACCACAGAGTTGTGGACTTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
* *
806573 GGTACCACAGAGTTGTGGACTTAAAAGG
66 GGTGCCACAGAGTTGTGGACTTAAAAGA
* * *
806601 AAACAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAA
1 AAAAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAA
806666 GGGTGCCACAGAGTTGTGGACTTAAAAGAA
65 GGGTGCCACAGAGTTGTGGACTTAAAAG-A
* *
806696 AAAAAGGTTCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAG
1 AAAAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TT-A-
** **
806761 AAGAGATTGCCACTA-AGTTGTGGACTT-TGAGA
62 AA-AGGGTGCCAC-AGAGTTGTGGACTTAAAAGA
* * *
806793 AAAGAGATGCCACTGAGTTGTGGACTT
1 AAAAAGGTGCCACGGAGTTGTGGACTT
806820 TGAGAAGAGA
Statistics
Matches: 271, Mismatches: 33, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
93 26 0.10
94 64 0.24
95 70 0.26
96 6 0.02
97 22 0.08
98 4 0.01
99 20 0.07
100 1 0.00
101 1 0.00
102 20 0.07
103 37 0.14
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (93 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
GGTGCCACAGAGTTGTGGACTTAAAAGA
Found at i:806715 original size:257 final size:255
Alignment explanation
Indices: 806185--806757 Score: 810
Period size: 257 Copynumber: 2.2 Consensus size: 255
806175 CTTGAAAGGG
* * * * *
806185 AAAAGGGTACCACGGAATCGTGGACTTAAAAAG-AAAAGGTGCCACGAAGTTATGGAC-TTAAAA
1 AAAAAGGTACCACGGAGTTGTGGGCTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGACTTTAAAA
* ** * * *
806248 AGAACAACGTGCCATGGAGTCGTGGACTTAAAAGGAAAAATATGCCACGGAGTTGTGGACTTAAA
66 AGAAAAACGTGCCACAGAGTCGTGGACTTAAAAGGAAAAAGATACCACAGAGTTGTGGACTTAAA
* * *
806313 AGGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAATTGTGGGCTTTAAAAAG
131 AGGGTACCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAATTGTGGGCTTTAAAAAG
* *
806378 AAAAAGGTGCCACGGAGATATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
196 AAAAAGGTGCCACGGAGATATGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGA
* * * * * *
806438 AAAAAGAGTGCCATGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCATGCAGTTGTGGGCTTTAA
1 AAAAAG-GTACCACGGAGTTGTGGGCTTAAAAAGAAAAAG-GTGCCACGAAGTTGTGGACTTTAA
* *
806503 AAAGAAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATACCACAGAGTTGTGGACTT
64 AAAG-AAAAACGTGCCACAGAGTCGTGGACTTAAAAGGAAAAAGATACCACAGAGTTGTGGACTT
* *
806568 AAAAGGGTACCACAGAGTTGTGGACTTAAAAGGAAACAGA-TGCCACGGAGTTGTGGGCTTTAAA
128 AAAAGGGTACCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAATTGTGGGCTTTAAA
* *
806632 AAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAA
193 AAGAAAAAGGTGCCACGGAGATATGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAG-A
* *
806696 AAAAAGGTTCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTT
1 AAAAAGGTACCACGGAGTTGTGGGC-TTAAAAAGAAAAAGGTGCCACGAAGTTGTGGACTTT
806758 GAGAAGAGAT
Statistics
Matches: 279, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
253 5 0.02
254 21 0.08
255 5 0.02
256 15 0.05
257 125 0.45
258 108 0.39
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (255 bp):
AAAAAGGTACCACGGAGTTGTGGGCTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGACTTTAAAA
AGAAAAACGTGCCACAGAGTCGTGGACTTAAAAGGAAAAAGATACCACAGAGTTGTGGACTTAAA
AGGGTACCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAATTGTGGGCTTTAAAAAG
AAAAAGGTGCCACGGAGATATGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGA
Found at i:806830 original size:30 final size:30
Alignment explanation
Indices: 806731--807231 Score: 488
Period size: 31 Copynumber: 16.1 Consensus size: 30
806721 TTTAAAAAGA
* * *
806731 AAAAGGTGCCACGGAGTTGTGGACTTTGAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * *
806761 AAGAGATTGCCACTAAGTTGTGGACTTTGAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAG
*
806792 AAAAGAGATGCCACTGAGTTGTGGACTTTGAG
1 -AAA-AGATGCCACTGAGTCGTGGACTTTGAG
*
806824 AAGAGATGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AG
* *
806855 AAAAAAGATGGCACTGAGTCGTGGACTTGGAAG
1 --AAAAGATGCCACTGAGTCGTGGACTTTG-AG
*
806888 AAAAGGATGCCACTGAGTCGTGGACTTAGA-
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAG
* *
806918 AAAGAGATGCCACTAAGTTGTGGACTTTGAAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTG-AG
*
806950 AAAAGATGCCACTGAGTCGTGGACTTGGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AG
* *
806981 AAAAAGATGCCACTGAGTCGTGGACTTAGAA
1 -AAAAGATGCCACTGAGTCGTGGACTTTGAG
*
807012 AAAAGATGCCACTGAGTTGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AG
* * *
807043 AAAAGATGTCACTGAGTCATGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * *
807073 AAGAGATGCCACTGAGTCGTGGATTTTAAAG
1 AAAAGATGCCACTGAGTCGTGGACTTT-GAG
*
807104 AAAAGATGCCACTGAGTCGTGGATTTTGGGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTT--G-AG
* **
807137 AGAAGGATGCCACTGAGTCGTGGACTTAAAAGG
1 A-AAAGATGCCACTGAGTCGTGGACTT-TGA-G
* * * *
807170 AAAATAGTGCCA-TG-GATTGTGAACTTAGA-
1 AAAAGA-TGCCACTGAG-TCGTGGACTTTGAG
807199 AAAGAGATGCCACTGAGTCGTGGACTTTGAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTGAG
807230 AA
1 AA
807232 GAGAGATTTG
Statistics
Matches: 397, Mismatches: 50, Indels: 47
0.80 0.10 0.10
Matches are distributed among these distances:
29 8 0.02
30 116 0.29
31 118 0.30
32 91 0.23
33 41 0.10
34 23 0.06
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.23
Consensus pattern (30 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAG
Found at i:806942 original size:188 final size:182
Alignment explanation
Indices: 806728--807228 Score: 589
Period size: 188 Copynumber: 2.7 Consensus size: 182
806718 GGCTTTAAAA
* * * * *
806728 AGAAAAAGGTGCCACGGAGTTGTGGACTTTGAGAAGAGATTGCCACTAAGTTGTGGACTTTGAGA
1 AGAAAAAGATGCCACTGAGTTGTGGACTTTGAGAAGAGA-TGCCACTGAGTCGTGGACTTAGAGA
* *
806793 AAAGAGATGCCACTGAGTTGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAA
65 AAA-AGATGCCACTGAGTTGTGGACTTAGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAG--A
*
806858 AAAGATGGCACTGAGTCGTGGAC-TTGGAAGAAAAGGATGCCACTGAGTCGTGGA-CTT
127 AAAGATGGCACTGAGTCATGGACTTTGG--GAAAA-GATGCCACTGAGTCGTGGATCTT
* * *
806915 AGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAA
1 AGAAAA-AGATGCCACTGAGTTGTGGACTTTG-AGAAGAGATGCCACTGAGTCGTGGACTTAG-A
* * *
806980 GAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAAAGATGCCACTGAGTTGTGGACTTTGAAGAA
63 GAAAAAGATGCCACTGAGTTGTGGACTTAGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAGAA
* * *
807045 AAGATGTCACTGAGTCATGGACTTTGGGAAGAGATGCCACTGAGTCGTGGATTTT
128 AAGATGGCACTGAGTCATGGACTTTGGGAAAAGATGCCACTGAGTCGTGGATCTT
* * * *
807100 AAAGAAAAGATGCCACTGAGTCGTGGATTTTGGGAAGAGAAGGATGCCACTGAGTCGTGGACTTA
1 AGA-AAAAGATGCCACTGAGTTGTGGACTTTGAG-A-AG-A-GATGCCACTGAGTCGTGGACTT-
* *
807165 AAAGGAAAATAG-TGCCA-TG-GATTGTGAACTTAGAAAAGAGATGCCACTGAGTCGTGGACTTT
60 AGA-GAAAA-AGATGCCACTGAG-TTGTGGACTTAGAAAAGAGATGCCACTGAGTCGTGGACTTT
807227 GA
122 GA
807229 GAAGAGAGAT
Statistics
Matches: 272, Mismatches: 28, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
184 20 0.07
185 31 0.11
186 26 0.10
187 12 0.04
188 158 0.58
189 23 0.08
190 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.23
Consensus pattern (182 bp):
AGAAAAAGATGCCACTGAGTTGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTAGAGAA
AAAGATGCCACTGAGTTGTGGACTTAGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAG
ATGGCACTGAGTCATGGACTTTGGGAAAAGATGCCACTGAGTCGTGGATCTT
Found at i:807000 original size:93 final size:93
Alignment explanation
Indices: 806728--807228 Score: 572
Period size: 93 Copynumber: 5.4 Consensus size: 93
806718 GGCTTTAAAA
* * * * * * *
806728 AGAAAA-AGGTGCCACGGAGTTGTGGACTTTG-AGAAGAGATTGCCACTAAGTTGTGGACTTTG-
1 AGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGA-TGCCACTGAGTCGTGGACTTGGA
*
806790 AGAAAAGAGATGCCACTGAGTTGTGGACTT
65 AGAAAA-AGATGCCACTGAGTCGTGGACTT
* * *
806820 TGAGAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAGATGGCACTGAGTCGTGGACTTGG
1 AGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAG--AAAAGATGCCACTGAGTCGTGGACTTGG
*
806885 AAGAAAAGGATGCCACTGAGTCGTGGACTT
64 AAGAAAAAGATGCCACTGAGTCGTGGACTT
* *
806915 AGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAA
1 AGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAA
806980 GAAAAAGATGCCACTGAGTCGTGGACTT
66 GAAAAAGATGCCACTGAGTCGTGGACTT
* * * *
807008 AGAAAAAAGATGCCACTGAGTTGTGGACTTTGAAGAAAAGATGTCACTGAGTCATGGACTTTGG-
1 AGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGAC-TTGGA
* *
807072 -G-AAGAGATGCCACTGAGTCGTGGATTTT
65 AGAAAAAGATGCCACTGAGTCGTGGA-CTT
* * *
807100 A-AAGAAAAGATGCCACTGAGTCGTGGATTTTGGGAAGAGAAGGATGCCACTGAGTCGTGGACTT
1 AGAA-AAGAGATGCCACTGAGTCGTGGACTTT--GAAGA-AAAGATGCCACTGAGTCGTGGACTT
** * *
807164 AAAAGGAAAATAG-TGCCA-TG-GATTGTGAACTT
62 GGAA-GAAAA-AGATGCCACTGAG-TCGTGGACTT
807196 AGAAAAGAGATGCCACTGAGTCGTGGACTTTGA
1 AGAAAAGAGATGCCACTGAGTCGTGGACTTTGA
807229 GAAGAGAGAT
Statistics
Matches: 354, Mismatches: 37, Indels: 34
0.83 0.09 0.08
Matches are distributed among these distances:
91 24 0.07
92 33 0.09
93 133 0.38
94 15 0.04
95 90 0.25
96 40 0.11
97 10 0.03
98 7 0.02
99 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.23
Consensus pattern (93 bp):
AGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTGGAA
GAAAAAGATGCCACTGAGTCGTGGACTT
Found at i:807080 original size:61 final size:62
Alignment explanation
Indices: 806727--807228 Score: 545
Period size: 62 Copynumber: 8.0 Consensus size: 62
806717 GGGCTTTAAA
* * * * *
806727 AAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAGAAGAGATTGCCACTAAGTTGTGGACTTTG
1 AAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAGA-TGCCACTGAGTCGTGGACTTTG
*
806790 -AGAAAAGAGATGCCACTGAGTTGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTG
1 AAGAAAA-AGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTG
* * *
806852 AAGAAAAAAGATGGCACTGAGTCGTGGACTTGGAAGAAAAGGATGCCACTGAGTCGTGGAC-TT-
1 AAG-AAAAAGATGCCACTGAGTCGTGGACTTTG-AGAAGA-GATGCCACTGAGTCGTGGACTTTG
* * * *
806915 -AGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTGG
1 AAGAAAA-AGATGCCACTGAGTCGTGGACTTTG-AGAAGAGATGCCACTGAGTCGTGGACTTTG
* * * *
806978 AAGAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAAAGATGCCACTGAGTTGTGGACTTTG
1 AAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTG
* * * * *
807040 AAG-AAAAGATGTCACTGAGTCATGGACTTTGGGAAGAGATGCCACTGAGTCGTGGATTTTA
1 AAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTG
* * *
807101 AAG-AAAAGATGCCACTGAGTCGTGGATTTTGGGAAGAGAAGGATGCCACTGAGTCGTGGACTTA
1 AAGAAAAAGATGCCACTGAGTCGTGGACTTTGAG-A-AG-A-GATGCCACTGAGTCGTGGACTTT
*
807165 A
62 G
* * * *
807166 AAGGAAAATAG-TGCCA-TG-GATTGTGAACTTAGAAAAGAGATGCCACTGAGTCGTGGACTTTG
1 AA-GAAAA-AGATGCCACTGAG-TCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTG
807228 A
1 A
807229 GAAGAGAGAT
Statistics
Matches: 381, Mismatches: 41, Indels: 35
0.83 0.09 0.08
Matches are distributed among these distances:
61 103 0.27
62 111 0.29
63 80 0.21
64 20 0.05
65 46 0.12
66 11 0.03
67 8 0.02
68 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (62 bp):
AAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTG
Found at i:808523 original size:16 final size:15
Alignment explanation
Indices: 808504--808543 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
808494 GCCTTTGCAC
808504 TTTTTTTTATGTGTTG
1 TTTTTTTTATGT-TTG
* *
808520 TTTTTTTTTTGTTTT
1 TTTTTTTTATGTTTG
808535 TTTTTTTTA
1 TTTTTTTTA
808544 CTTTTTCATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.85
Consensus pattern (15 bp):
TTTTTTTTATGTTTG
Found at i:815916 original size:51 final size:51
Alignment explanation
Indices: 815856--815969 Score: 144
Period size: 51 Copynumber: 2.3 Consensus size: 51
815846 AATAACAGGA
* *
815856 TTGGAGTATCCCTGAATGTGAAAAATT-A-GTTTTTTGAAAATAAAACTGGGG
1 TTGGAGTATCCCTGAATGTGAAAAATTGATG-TTTTAG-AAATAAAACTGAGG
* * *
815907 TTGGAGTATCCCTGATTGTGACAAATTGATGTTTTAGAAATAAAGCTGAGG
1 TTGGAGTATCCCTGAATGTGAAAAATTGATGTTTTAGAAATAAAACTGAGG
815958 TTGGAGTA-CCCT
1 TTGGAGTATCCCT
815970 CGAAAATAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
50 4 0.07
51 45 0.80
52 6 0.11
53 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.33
Consensus pattern (51 bp):
TTGGAGTATCCCTGAATGTGAAAAATTGATGTTTTAGAAATAAAACTGAGG
Found at i:815993 original size:77 final size:78
Alignment explanation
Indices: 815902--816184 Score: 304
Period size: 78 Copynumber: 3.6 Consensus size: 78
815892 AAAATAAAAC
* * * *
815902 TGGGGTTGGAGTATCCCTGATTGT-GACAAATTGATGTTTTAGAAATAAAG-CTGAGGTTGGAGT
1 TGGGGTTAGAGTATCCCCGATGGTGGA-AAATCGATGTTTTAGAAATAAAGTC-GAGGTTGGAGT
*
815965 A-CCCTCGAAAATAA
64 ATCCCTCAAAAATAA
** * * * * * *
815979 CAGGGTTAGAGTATCCCCGATGGTGGAAAATCGGTGTTTTGGAAATAAAATCAAAGTAGGAGTAT
1 TGGGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAGTCGAGGTTGGAGTAT
*
816044 CCCAT-AAAAAAAA
66 CCC-TCAAAAATAA
** * * *
816057 TGGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTTAAAAATAAAGTCGAGGTTGGAGTAT
1 TGGGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAGTCGAGGTTGGAGTAT
816122 CTCCTCAAAAATAA
66 C-CCTCAAAAATAA
* * *
816136 TGGGGTTGGAGTATCCCCGATGGTGGAAAATCGGTGTTTTGGAAATAAA
1 TGGGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAA
816185 AACATCGATA
Statistics
Matches: 164, Mismatches: 36, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
77 47 0.29
78 66 0.40
79 51 0.31
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.28
Consensus pattern (78 bp):
TGGGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAGTCGAGGTTGGAGTAT
CCCTCAAAAATAA
Found at i:816041 original size:128 final size:130
Alignment explanation
Indices: 815779--816046 Score: 301
Period size: 128 Copynumber: 2.1 Consensus size: 130
815769 GTGTCTACAT
* *
815779 GGAGTATCCCTAATTATGAAAAATCAATGTTTTAGAAATAAGGCCGGGGTTGAAGTATCCTCTCG
1 GGAGTATCCCTAATTATGAAAAATCAATGTTTTAGAAATAAAGCCGAGGTTGAAGTATCCTCTCG
* * * * *** *
815844 AAAATAACAGGATTGGAGTATCCCTGAATGTGAAAAATTAGTTTTTTGAAAATAAAACTGGGGTT
66 AAAATAACAGGATTAGAGTATCCCCGAATGTGAAAAATCAGTGTTTTGAAAATAAAACTAAAGTA
* * * ** * *
815909 GGAGTATCCCTGATTGTGACAAATTGATGTTTTAGAAATAAAGCTGAGGTTGGAGTA-CC-CTCG
1 GGAGTATCCCTAATTATGAAAAATCAATGTTTTAGAAATAAAGCCGAGGTTGAAGTATCCTCTCG
* * * *
815972 AAAATAACAGGGTTAGAGTATCCCCG-ATGGTGGAAAATCGGTGTTTTGGAAATAAAA-TCAAAG
66 AAAATAACAGGATTAGAGTATCCCCGAAT-GTGAAAAATCAGTGTTTTGAAAATAAAACT-AAAG
816035 TA
129 TA
816037 GGAGTATCCC
1 GGAGTATCCC
816047 ATAAAAAAAA
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
127 3 0.03
128 62 0.54
129 2 0.02
130 48 0.42
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (130 bp):
GGAGTATCCCTAATTATGAAAAATCAATGTTTTAGAAATAAAGCCGAGGTTGAAGTATCCTCTCG
AAAATAACAGGATTAGAGTATCCCCGAATGTGAAAAATCAGTGTTTTGAAAATAAAACTAAAGTA
Found at i:821424 original size:1 final size:1
Alignment explanation
Indices: 821420--821490 Score: 52
Period size: 1 Copynumber: 71.0 Consensus size: 1
821410 AAACAAAATG
* * * * * * * * * *
821420 AAAAACAAAAAAAACAAAAAAACAAAAAGAAAAAGAAAAAAAGAGAAAAAACAAAAAACAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
821485 AAAAAA
1 AAAAAA
821491 GGTGCAAAGG
Statistics
Matches: 50, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.86, C:0.07, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:821440 original size:17 final size:18
Alignment explanation
Indices: 821420--821487 Score: 72
Period size: 17 Copynumber: 3.8 Consensus size: 18
821410 AAACAAAATG
821420 AAAAACAA-AAAAAACAA
1 AAAAACAAGAAAAAACAA
821437 AAAAACAA-AAAGAAA-AA
1 AAAAACAAGAAA-AAACAA
*
821454 GAAAAAAAGAGAAAAAAC-A
1 -AAAAACA-AGAAAAAACAA
821473 AAAAACAAGAAAAAA
1 AAAAACAAGAAAAAA
821488 AAAGGTGCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
17 21 0.48
18 15 0.34
19 5 0.11
20 3 0.07
ACGTcount: A:0.85, C:0.07, G:0.07, T:0.00
Consensus pattern (18 bp):
AAAAACAAGAAAAAACAA
Found at i:821443 original size:29 final size:29
Alignment explanation
Indices: 821404--821476 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
821394 AAATAATGAA
*
821404 AAAAATAAACAAAATGAAAAACAAAAAAA-
1 AAAAA-AAACAAAAAGAAAAACAAAAAAAG
*
821433 ACAAAAAAACAAAAAGAAAAAGAAAAAAAG
1 A-AAAAAAACAAAAAGAAAAACAAAAAAAG
*
821463 AGAAAAAACAAAAA
1 AAAAAAAACAAAAA
821477 ACAAGAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 34 0.87
30 5 0.13
ACGTcount: A:0.84, C:0.07, G:0.07, T:0.03
Consensus pattern (29 bp):
AAAAAAAACAAAAAGAAAAACAAAAAAAG
Found at i:821461 original size:37 final size:37
Alignment explanation
Indices: 821420--821491 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
821410 AAACAAAATG
*
821420 AAAAACAAAAAAAACAAAAAAACAA-AAAGAAAAAGAA
1 AAAAACAAAAAAAAC-AAAAAACAAGAAAAAAAAAGAA
* *
821457 AAAAAGAGAAAAAACAAAAAACAAGAAAAAAAAAG
1 AAAAACAAAAAAAACAAAAAACAAGAAAAAAAAAG
821492 GTGCAAAGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 9 0.29
37 22 0.71
ACGTcount: A:0.85, C:0.07, G:0.08, T:0.00
Consensus pattern (37 bp):
AAAAACAAAAAAAACAAAAAACAAGAAAAAAAAAGAA
Found at i:821487 original size:29 final size:27
Alignment explanation
Indices: 821405--821491 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 27
821395 AATAATGAAA
* *
821405 AAAATAAACAAAATGAAAAACAAAAAAAAC
1 AAAA-AAACAAAAAG-AAAA-AAAAAAAAG
821435 AAAAAAACAAAAAGAAAAAGAAAAAAAG
1 AAAAAAACAAAAAGAAAAA-AAAAAAAG
821463 AGAAAAAACAAAAA-ACAAGAAAAAAAAAG
1 A-AAAAAACAAAAAGA-AA-AAAAAAAAAG
821492 GTGCAAAGGC
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
27 1 0.02
28 13 0.25
29 31 0.61
30 6 0.12
ACGTcount: A:0.83, C:0.07, G:0.08, T:0.02
Consensus pattern (27 bp):
AAAAAAACAAAAAGAAAAAAAAAAAAG
Found at i:822840 original size:33 final size:33
Alignment explanation
Indices: 822814--823057 Score: 169
Period size: 33 Copynumber: 7.6 Consensus size: 33
822804 AAGTTCACTG
822814 CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
1 CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
* * ** * *
822847 CTCAGTGGCATCCTTTTTCTTCCTAGCCCACGA
1 CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
* * * * *
822880 CTCAGTGGCATCATTTTTCTTCCAAGTCCACGA
1 CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
* * * * *
822913 CTTAGTGGGATCCTTTTTCTTCCAAGTCCACGA
1 CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
* * *
822946 CTCAATGGCA---TTTTT-TTCCAAGTCCACGA
1 CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
* * *
822975 CTTAGTGGCATCCTTTTTCTCCCAAAGTCCATGA
1 CTAAATGGCATCCTTTTTCT-TCAAAGTCCATGA
* * * *
823009 CTTAGTGGCAT-C-TCTTC-TCCAAGTCCATGA
1 CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
* * *
823039 CTCAGTGGCACCCTTTTTC
1 CTAAATGGCATCCTTTTTC
823058 CTTTTAAGTC
Statistics
Matches: 178, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
29 22 0.12
30 25 0.14
31 1 0.01
32 13 0.07
33 96 0.54
34 21 0.12
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (33 bp):
CTAAATGGCATCCTTTTTCTTCAAAGTCCATGA
Found at i:822897 original size:66 final size:66
Alignment explanation
Indices: 822819--823082 Score: 290
Period size: 66 Copynumber: 4.1 Consensus size: 66
822809 CACTGCTAAA
* * * * *
822819 TGGCATCCTTTTTCTTCAAAGTCCATGACTCAGTGGCATCCTTTTTCTTCCTAGCCCACGACTCA
1 TGGCATCATTTTTCTTCCAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACGACTCA
822884 G
66 G
* *
822885 TGGCATCATTTTTCTTCCAAGTCCACGACTTAGTGGGATCCTTTTTCTTCCAAGTCCACGACTCA
1 TGGCATCATTTTTCTTCCAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACGACTCA
*
822950 A
66 G
* * * *
822951 TGG---CATTTTT-TTCCAAGTCCACGACTTAGTGGCATCCTTTTTCTCCCAAAGTCCATGACTT
1 TGGCATCATTTTTCTTCCAAGTCCACGACTCAGTGGCATCCTTTTTCTTCC-AAGTCCACGACTC
823012 AG
65 AG
* * * ** *
823014 TGGCATC--TCTTC-TCCAAGTCCATGACTCAGTGGCACCCTTTTTCCTTTTAAGTCCACAACTC
1 TGGCATCATTTTTCTTCCAAGTCCACGACTCAGTGGCATCCTTTTT-CTTCCAAGTCCACGACTC
*
823076 CG
65 AG
823078 TGGCA
1 TGGCA
823083 CTTTTTTAAG
Statistics
Matches: 168, Mismatches: 24, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
62 35 0.21
63 22 0.13
64 47 0.28
65 2 0.01
66 62 0.37
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (66 bp):
TGGCATCATTTTTCTTCCAAGTCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACGACTCA
G
Found at i:823081 original size:34 final size:33
Alignment explanation
Indices: 823029--823408 Score: 219
Period size: 34 Copynumber: 11.8 Consensus size: 33
823019 TCTCTTCTCC
** *
823029 AAGTCCATGACTCAGTGGCACCCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT
823063 AAGTCCACAACTCCGTGGCA-C---TT--TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
823090 AAGTCCATAGCTCCGTGGCACCTTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * ***
823122 CAAAG-CCTACAACTCCGTAGCACTTTTTTTCCTCCAA
1 --AAGTCC-ACAACTCCGTGGCAC-CTTTTTCCT-TTT
*
823159 AAGTCCACAACTCCATGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
** *
823186 AAGTCCACAACTCTATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
823219 AAGCCCACAACTTCGTGGCA-C-----CATTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
823246 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * *
823278 CAAAGCCCACAACTTCATGGCACCTTTTTTCCTCTA
1 --AAGTCCACAACTCCGTGGCACC-TTTTTCCTTTT
*
823314 AAGTCCACAACTCTGTGGCACCTTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * ***
823346 CAAAGCCCACAACTTCGTGGCATCTTTTTTCCTCAAA
1 --AAGTCCACAACTCCGTGGCA-CCTTTTTCCT-TTT
*
823383 AAGTCTACAACTCCGTGGCACCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTT
823409 AAGTCTATAA
Statistics
Matches: 264, Mismatches: 49, Indels: 66
0.70 0.13 0.17
Matches are distributed among these distances:
27 64 0.24
28 6 0.02
29 2 0.01
31 2 0.01
32 13 0.05
33 29 0.11
34 91 0.34
35 48 0.18
36 9 0.03
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.33
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:823094 original size:27 final size:27
Alignment explanation
Indices: 823059--823272 Score: 106
Period size: 27 Copynumber: 7.1 Consensus size: 27
823049 CCCTTTTTCC
823059 TTTTAAGTCCACAACTCCGTGGCACTT
1 TTTTAAGTCCACAACTCCGTGGCACTT
* *
823086 TTTTAAGTCCATAGCTCCGTGGCACCTTTTT
1 TTTTAAGTCCACAACTCCGTGGCA-C---TT
*
823117 CTTTTCAAAG-CCTACAACTCCGTAGCACTTTT
1 -TTTT--AAGTCC-ACAACTCCGTGGCAC--TT
* **
823149 TTTCCTCCAAAAGTCCACAACTCCATGGCACCC
1 TTT--T----AAGTCCACAACTCCGTGGCACTT
**
823182 TTTTAAGTCCACAACTCTATGGCACCTTGTT
1 TTTTAAGTCCACAACTCCGTGGCA-C---TT
* * **
823213 CCTTTTAAGCCCACAACTTCGTGGCACCA
1 --TTTTAAGTCCACAACTCCGTGGCACTT
*
823242 TTTTAAGTCCACAACTCCGTGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACTT
823269 TTTT
1 TTTT
823273 CTTTTCAAAG
Statistics
Matches: 146, Mismatches: 22, Indels: 38
0.71 0.11 0.18
Matches are distributed among these distances:
27 69 0.47
28 2 0.01
31 6 0.04
32 9 0.06
33 27 0.18
34 14 0.10
35 17 0.12
36 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACTT
Found at i:823134 original size:61 final size:61
Alignment explanation
Indices: 823029--823150 Score: 162
Period size: 61 Copynumber: 2.0 Consensus size: 61
823019 TCTCTTCTCC
*
823029 AAGTCCATGACTCAGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTTT
1 AAGTCCATGACTCAGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTAGCACTTTTTT
*
823090 AAGTCCAT-AGCTCCGTGGCA-CCTTTTT-CTTTTCAAAG-CCTACAACTCCGTAGCACTTTTTT
1 AAGTCCATGA-CTCAGTGGCACCCTTTTTCCTTTT--AAGTCC-ACAACTCCGTAGCACTTTTTT
823151 TCCTCCAAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
59 5 0.09
60 10 0.18
61 40 0.73
ACGTcount: A:0.20, C:0.30, G:0.14, T:0.36
Consensus pattern (61 bp):
AAGTCCATGACTCAGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTAGCACTTTTTT
Found at i:823227 original size:156 final size:156
Alignment explanation
Indices: 823044--823340 Score: 434
Period size: 156 Copynumber: 1.9 Consensus size: 156
823034 CATGACTCAG
* * ** * *
823044 TGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTTTAAGTCCATAGCTCCGTGGC
1 TGGCACCCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCATTTTAAGTCCACAACTCCGTGGC
* * *
823109 ACCTTTTTCTTTTCAAAGCCTACAACTCCGTAGCACTTTTTTTCCTCCAAAAGTCCACAACTCCA
66 ACCTTTTTCTTTTCAAAGCCCACAACTCCATAGCACCTTTTTTCCT-CAAAAGTCCACAACTCCA
823174 TGGCACCCTTTTAAGTCCACAACTCTA
130 TGGCACCCTTTTAAGTCCACAACTCTA
*
823201 TGGCA-CCTTGTTCCTTTTAAGCCCACAACTTCGTGGCACCATTTTAAGTCCACAACTCCGTGGC
1 TGGCACCCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCATTTTAAGTCCACAACTCCGTGGC
* * * **
823265 ACCTTTTTCTTTTCAAAGCCCACAACTTCATGGCACCTTTTTTCCTCTAAAGTCCACAACTCTGT
66 ACCTTTTTCTTTTCAAAGCCCACAACTCCATAGCACCTTTTTTCCTCAAAAGTCCACAACTCCAT
*
823330 GGCACCTTTTT
131 GGCACCCTTTT
823341 CTTTTCAAAG
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
155 26 0.21
156 93 0.75
157 5 0.04
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (156 bp):
TGGCACCCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCATTTTAAGTCCACAACTCCGTGGC
ACCTTTTTCTTTTCAAAGCCCACAACTCCATAGCACCTTTTTTCCTCAAAAGTCCACAACTCCAT
GGCACCCTTTTAAGTCCACAACTCTA
Found at i:823229 original size:60 final size:60
Alignment explanation
Indices: 823158--823367 Score: 242
Period size: 68 Copynumber: 3.4 Consensus size: 60
823148 TTTTCCTCCA
* * * * *
823158 AAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTTCATGGCACCATTTTAAGTCCACAACTCTGTGGCACCTT-TTTCTTTT
* *
823219 -AAGCCCACAACTTCGTGGCACCATTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
1 AAAGCCCACAACTTCATGGCACCATTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTT
*
823278 CAAAGCCCACAACTTCATGGCACCTTTTTTCCTCTAAAGTCCACAACTCTGTGGCACCTTTTTCT
1 -AAAGCCCACAACTTCATGGCACC---ATT--T-T-AAGTCCACAACTCTGTGGCACCTTTTTCT
823343 TTT
58 TTT
*
823346 CAAAGCCCACAACTTCGTGGCA
1 -AAAGCCCACAACTTCATGGCA
823368 TCTTTTTTCC
Statistics
Matches: 129, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
59 7 0.05
60 45 0.35
61 21 0.16
64 2 0.02
66 1 0.01
67 1 0.01
68 52 0.40
ACGTcount: A:0.24, C:0.33, G:0.12, T:0.31
Consensus pattern (60 bp):
AAAGCCCACAACTTCATGGCACCATTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTT
Found at i:823355 original size:68 final size:69
Alignment explanation
Indices: 823246--823408 Score: 274
Period size: 68 Copynumber: 2.4 Consensus size: 69
823236 GCACCATTTT
823246 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTTCATGGCACCTTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTTCATGGCACCTTTTTTCCT
*
823311 C-TA
66 CAAA
* * *
823314 AAGTCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGCCCACAACTTCGTGGCATCTTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTTCATGGCACCTTTTTTCCT
823379 CAAA
66 CAAA
*
823383 AAGTCTACAACTCCGTGGCACCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTT
823409 AAGTCTATAA
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
68 63 0.72
69 25 0.28
ACGTcount: A:0.23, C:0.32, G:0.12, T:0.34
Consensus pattern (69 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTTCATGGCACCTTTTTTCCT
CAAA
Found at i:823393 original size:35 final size:33
Alignment explanation
Indices: 822965--823408 Score: 177
Period size: 34 Copynumber: 13.8 Consensus size: 33
822955 ATTTTTTTCC
* *
822965 AAGTCCACGACTTAGTGGCATCCTTTTTCTCC-CA
1 AAGTCCACAACTTCGTGGCA-CCTTTTT-TCCTCA
** * * * *
822999 AAGTCCATGACTTAGTGGCA--TCTCTT-CTCC
1 AAGTCCACAACTTCGTGGCACCTTTTTTCCTCA
** * **
823029 AAGTCCATGAC-TCAGTGGCACCCTTTTTCCTTTT
1 AAGTCCACAACTTC-GTGGCACCTTTTTTCC-TCA
*
823063 AAGTCCACAACTCCGTGGCA-C-TTTTT--T--
1 AAGTCCACAACTTCGTGGCACCTTTTTTCCTCA
* * * **
823090 AAGTCCATAGCTCCGTGGCACCTTTTTCTTTTCA
1 AAGTCCACAACTTCGTGGCACCTTTTT-TCCTCA
* * *
823124 AAG-CCTACAACTCCGTAGCACTTTTTTTCCTCCAA
1 AAGTCC-ACAACTTCGTGGCACCTTTTTTCCT-C-A
* * *
823159 AAGTCCACAACTCCATGGCACC--CTTT--T--
1 AAGTCCACAACTTCGTGGCACCTTTTTTCCTCA
* * **
823186 AAGTCCACAAC-TCTATGGCACC-TTGTTCCTTTT
1 AAGTCCACAACTTC-GTGGCACCTTTTTTCC-TCA
* *
823219 AAGCCCACAACTTCGTGGCACC--ATTT--T--
1 AAGTCCACAACTTCGTGGCACCTTTTTTCCTCA
* **
823246 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCA
1 AAGTCCACAACTTCGTGGCACCTTTTT-TCCTCA
* *
823280 AAGCCCACAACTTCATGGCACCTTTTTTCCTCTA
1 AAGTCCACAACTTCGTGGCACCTTTTTTCCTC-A
**
823314 AAGTCCACAAC-TCTGTGGCACCTTTTTCTTTTCA
1 AAGTCCACAACTTC-GTGGCACCTTTTT-TCCTCA
* *
823348 AAGCCCACAACTTCGTGGCATCTTTTTTCCTCAAA
1 AAGTCCACAACTTCGTGGCACCTTTTTTCCTC--A
* *
823383 AAGTCTACAACTCCGTGGCACCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTT
823409 AAGTCTATAA
Statistics
Matches: 319, Mismatches: 52, Indels: 77
0.71 0.12 0.17
Matches are distributed among these distances:
26 1 0.00
27 57 0.18
28 3 0.01
29 10 0.03
30 21 0.07
31 5 0.02
32 12 0.04
33 34 0.11
34 128 0.40
35 46 0.14
36 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (33 bp):
AAGTCCACAACTTCGTGGCACCTTTTTTCCTCA
Found at i:823420 original size:26 final size:26
Alignment explanation
Indices: 823383--823432 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
823373 TTTCCTCAAA
823383 AAGTCTACAACTCCGTGGCACCTTTT
1 AAGTCTACAACTCCGTGGCACCTTTT
* **
823409 AAGTCTATAACTTTGTGGCACCTT
1 AAGTCTACAACTCCGTGGCACCTT
823433 GTTCCTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (26 bp):
AAGTCTACAACTCCGTGGCACCTTTT
Found at i:823503 original size:223 final size:225
Alignment explanation
Indices: 823090--823512 Score: 595
Period size: 224 Copynumber: 1.9 Consensus size: 225
823080 GCACTTTTTT
* * *
823090 AAGTCCATAGCTCCGTGGCACCTTTTTCTTTTCAAAGCCTACAACTCCGTAGCACTTTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTAGCACTTTTTTTCCT
*
823155 CCAAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTTA
66 CAAAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTTA
*
823220 AGCCCACAACTTCGTGGCACCATTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTC-AAAGC
131 AGCCCACAACTTCGTGGCACCATTTTAAGTCCACAACTCCGTGGCACCTTTGTCTTTTCAAAAGC
823284 CCACAACTTCATGGCACCTTTTTTCCTCTA
196 CCACAACTTCATGGCACCTTTTTTCCTCTA
* * *
823314 AAGTCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGCCCACAACTTCGTGGCA-TCTTTTTTCC
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTAGCACT-TTTTTTCC
* * * * * *
823378 TCAAAAAGTCTACAACTCCGTGGCA-CCTTTTAAGTCTATAACTTTGTGGCACCTTGTTCCTTTT
65 TCAAAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTT
** * ** **
823442 AAGTTCACAAC-TCTGTGGCACTC-TTTTAAGTCTACAACTTTGTGGTGCCTTTGTCTTTTCAAA
130 AAGCCCACAACTTC-GTGGCAC-CATTTTAAGTCCACAACTCCGTGGCACCTTTGTCTTTTCAAA
823505 AGCCCACA
193 AGCCCACA
823513 CAAGTTGATG
Statistics
Matches: 174, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
222 2 0.01
223 83 0.48
224 89 0.51
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (225 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTAGCACTTTTTTTCCT
CAAAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTTA
AGCCCACAACTTCGTGGCACCATTTTAAGTCCACAACTCCGTGGCACCTTTGTCTTTTCAAAAGC
CCACAACTTCATGGCACCTTTTTTCCTCTA
Found at i:823575 original size:32 final size:33
Alignment explanation
Indices: 823500--823581 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 33
823490 CTTTGTCTTT
*
823500 TCAAAAGCCCACACAAGTTGATGGCAACCCCTC
1 TCAAAAGCCCACACAAGTAGATGGCAACCCCTC
823533 TCAAAAGCCCACACAAGTCAG-TGGCAA-CCCT-
1 TCAAAAGCCCACACAAGT-AGATGGCAACCCCTC
823564 TACAAAAGCCCACACAAG
1 T-CAAAAGCCCACACAAG
823582 CTGGTGGCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
31 1 0.02
32 20 0.43
33 24 0.52
34 1 0.02
ACGTcount: A:0.38, C:0.35, G:0.15, T:0.12
Consensus pattern (33 bp):
TCAAAAGCCCACACAAGTAGATGGCAACCCCTC
Found at i:823589 original size:32 final size:32
Alignment explanation
Indices: 823500--823590 Score: 114
Period size: 32 Copynumber: 2.8 Consensus size: 32
823490 CTTTGTCTTT
*
823500 TCAAAAGCCCACACAAGTTGATGGCAACCCCTC
1 TCAAAAGCCCACACAAG-TGGTGGCAACCCCTC
*
823533 TCAAAAGCCCACACAAGTCAGTGGCAA-CCCT-
1 TCAAAAGCCCACACAAGT-GGTGGCAACCCCTC
823564 TACAAAAGCCCACACAAGCTGGTGGCA
1 T-CAAAAGCCCACACAAG-TGGTGGCA
823591 TCTCCTTCTA
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
31 1 0.02
32 27 0.52
33 24 0.46
ACGTcount: A:0.35, C:0.34, G:0.18, T:0.13
Consensus pattern (32 bp):
TCAAAAGCCCACACAAGTGGTGGCAACCCCTC
Found at i:823758 original size:52 final size:49
Alignment explanation
Indices: 823599--824088 Score: 365
Period size: 52 Copynumber: 9.9 Consensus size: 49
823589 CATCTCCTTC
* * *
823599 TAAGTCCAATGTCGCGGGCCTTGAATCAGCATATAGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
823648 TAAGCCCAATGTCTCTGGCCTTGAATCAGCACATTGGCACCATCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
823697 TAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACTTTTTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC---CTTCATCTT
* * * **
823749 TAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTAGCACATTTTTCTTTCT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC--T-T
*
823801 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATT---A-C--CA-C--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
823841 -AAG-CCTATATTGCTGGCATTGAATCAACATATTGGCACCTTTATCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTT
* * ** * * *
823891 TAAGTCCAATGTTGTTGATCTTGAATCAGCA-ATTAGAACCTTCTTCTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC-TT
* *
823940 CTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGCCATCTT
1 -T-AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TT--CATCTT
* * * * *
823994 TAAGTCTAATATCGTTGTCCTTGAATCAGCATATTGGCACCTTTGTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTT
* * * *
824046 TAAGGCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT
824089 TATCATTCCT
Statistics
Matches: 354, Mismatches: 58, Indels: 58
0.75 0.12 0.12
Matches are distributed among these distances:
38 24 0.07
39 3 0.01
41 1 0.00
42 1 0.00
45 1 0.00
47 2 0.01
48 5 0.01
49 86 0.24
50 2 0.01
51 36 0.10
52 182 0.51
53 5 0.01
54 3 0.01
55 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.34
Consensus pattern (49 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:823900 original size:142 final size:141
Alignment explanation
Indices: 823717--823972 Score: 386
Period size: 142 Copynumber: 1.8 Consensus size: 141
823707 ATCGCTAGCC
* * * * *
823717 TTGAATTAGCATATTGGCACTTTTTTCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACA
1 TTGAATCAACATATTGGCACCTTTATCATCTTTAAGTCCAATGTCGTTGACCTTGAATCAGCA-A
* * * *
823782 TTAGCACATTTTTCTTTCTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTACCACAAGCCT
65 TTAGAACATTCTTCTTTCTCAAGACCAATATCGCTGGCCTTGAATCAGCACATTACCACAAGCCT
823847 ATATTGCTGGCA
130 ATATTGCTGGCA
* *
823859 TTGAATCAACATATTGGCACCTTTATCATCTTTAAGTCCAATGTTGTTGATCTTGAATCAGCAAT
1 TTGAATCAACATATTGGCACCTTTATCATCTTTAAGTCCAATGTCGTTGACCTTGAATCAGCAAT
* *
823924 TAGAACCTTCTTCTTTCTCAAGTCCAATATCGCTGGCCTTGAATCAGCA
66 TAGAACATTCTTCTTTCTCAAGACCAATATCGCTGGCCTTGAATCAGCA
823973 TATTGGCACC
Statistics
Matches: 101, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
141 45 0.45
142 56 0.55
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (141 bp):
TTGAATCAACATATTGGCACCTTTATCATCTTTAAGTCCAATGTCGTTGACCTTGAATCAGCAAT
TAGAACATTCTTCTTTCTCAAGACCAATATCGCTGGCCTTGAATCAGCACATTACCACAAGCCTA
TATTGCTGGCA
Found at i:824069 original size:245 final size:240
Alignment explanation
Indices: 823619--824076 Score: 589
Period size: 245 Copynumber: 1.9 Consensus size: 240
823609 GTCGCGGGCC
* * *
823619 TTGAATCAGCATATAGGCACCTTCATCTTTAAGCCCAATGTCTCTGGCCTTGAATCAGCACATTG
1 TTGAATCAACATATAGGCACCTTCATCTTTAAGCCCAATGTCTCTGACCTTGAATCAGCACATTA
* * * **
823684 GCACCATCATCTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACTTTTTTCATCTT
66 GAACCATCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGCCATCTT
* * * *
823749 TAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTAGCACATTTTTCTTTCTTAAGACCAATGTC
131 TAAGTCCAATATCGTTGGCCTTGAATCAGCACATTAGCACATTTGTCTCTCTTAAGACCAATATC
823814 GCTGGCCTTGAATCAGCACATTACCACAAGCCTATATTGCTGGCA
196 GCTGGCCTTGAATCAGCACATTACCACAAGCCTATATTGCTGGCA
* * * *
823859 TTGAATCAACATATTGGCACCTTTATCATCTTTAAGTCCAATGT-TGTTGATCTTGAATCAGCA-
1 TTGAATCAACATATAGGCACC--T-TCATCTTTAAGCCCAATGTCT-CTGACCTTGAATCAGCAC
* * *
823922 ATTAGAACCTTCTTCTTTCTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG
62 ATTAGAACCATCATC-TT-T-AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTG
* * * * * *
823987 CCATCTTTAAGTCTAATATCGTTGTCCTTGAATCAGCATATTGGCACCTTTGTCATCT-TTAAGG
124 CCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTAGCACATTTGTC-TCTCTTAAGA
*
824051 CCAATATCGTTGGCCTTGAATCAGCA
188 CCAATATCGCTGGCCTTGAATCAGCA
824077 TATTGGCACC
Statistics
Matches: 184, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
240 19 0.10
242 13 0.07
243 34 0.18
244 1 0.01
245 115 0.62
246 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (240 bp):
TTGAATCAACATATAGGCACCTTCATCTTTAAGCCCAATGTCTCTGACCTTGAATCAGCACATTA
GAACCATCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGCCATCTT
TAAGTCCAATATCGTTGGCCTTGAATCAGCACATTAGCACATTTGTCTCTCTTAAGACCAATATC
GCTGGCCTTGAATCAGCACATTACCACAAGCCTATATTGCTGGCA
Found at i:824135 original size:61 final size:60
Alignment explanation
Indices: 824040--824173 Score: 187
Period size: 61 Copynumber: 2.2 Consensus size: 60
824030 GCACCTTTGT
* *
824040 CATCTTTAAGGCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCCTCC
1 CATCTTTAA-GCCAATATCGTTGGCCATCAATCAGCATATTGGCACCTTTATCATTCCTCC
* * * *
824101 CATCTTTAAGCTCGATATTGTTGGCCATCAATCAGCATATTGGCACCTTTATCATTCTTCG
1 CATCTTTAAGC-CAATATCGTTGGCCATCAATCAGCATATTGGCACCTTTATCATTCCTCC
*
824162 CATCCTTAAGCC
1 CATCTTTAAGCC
824174 CAACGTCGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
60 3 0.05
61 62 0.95
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (60 bp):
CATCTTTAAGCCAATATCGTTGGCCATCAATCAGCATATTGGCACCTTTATCATTCCTCC
Found at i:824195 original size:61 final size:61
Alignment explanation
Indices: 824040--824198 Score: 165
Period size: 61 Copynumber: 2.6 Consensus size: 61
824030 GCACCTTTGT
* * * * *
824040 CATCTTTAAGGCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCCTCC
1 CATCCTTAAGCCCAACATCGCTGACCTTGAATCAGCATATTGGCACCTTTATCATTCCTCC
* * * * * * * * * * *
824101 CATCTTTAAGCTCGATATTGTTGGCCATCAATCAGCATATTGGCACCTTTATCATTCTTCG
1 CATCCTTAAGCCCAACATCGCTGACCTTGAATCAGCATATTGGCACCTTTATCATTCCTCC
*
824162 CATCCTTAAGCCCAACGTCGCTGACCTTGAATCAGCA
1 CATCCTTAAGCCCAACATCGCTGACCTTGAATCAGCA
824199 CTTTAGCACT
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 80 1.00
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (61 bp):
CATCCTTAAGCCCAACATCGCTGACCTTGAATCAGCATATTGGCACCTTTATCATTCCTCC
Found at i:824922 original size:20 final size:20
Alignment explanation
Indices: 824854--824931 Score: 61
Period size: 20 Copynumber: 3.8 Consensus size: 20
824844 TGTATCAATA
*
824854 CAATGTATCGATACATGCT-T
1 CAATGTATCGATACAT-TTAT
*
824874 CAAATTATATCGATACATTTAT
1 C-AA-TGTATCGATACATTTAT
*
824896 CATTGTATCGATACA-TTATT
1 CAATGTATCGATACATTTA-T
* *
824916 TAATGTATTGATACAT
1 CAATGTATCGATACAT
824932 GAAGGCAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
19 3 0.07
20 25 0.54
21 4 0.09
22 14 0.30
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (20 bp):
CAATGTATCGATACATTTAT
Found at i:828007 original size:10 final size:10
Alignment explanation
Indices: 827992--828041 Score: 68
Period size: 10 Copynumber: 5.2 Consensus size: 10
827982 ATTTCATATG
827992 TTTTTACTTT
1 TTTTTACTTT
828002 TTTTTACTTT
1 TTTTTACTTT
* *
828012 TTCTTA-TGT
1 TTTTTACTTT
828021 TTTTT-CTTT
1 TTTTTACTTT
828030 TTTTTACTTT
1 TTTTTACTTT
828040 TT
1 TT
828042 CTTCCTTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 13 0.38
10 21 0.62
ACGTcount: A:0.08, C:0.10, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTTACTTT
Found at i:828023 original size:28 final size:28
Alignment explanation
Indices: 827983--828044 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
827973 AGCCACTCCA
*
827983 TTTCATATGTTTTTACTTTTTTTTACTT
1 TTTCTTATGTTTTTACTTTTTTTTACTT
*
828011 TTTCTTATGTTTTTTCTTTTTTTTACTT
1 TTTCTTATGTTTTTACTTTTTTTTACTT
828039 TTTCTT
1 TTTCTT
828045 CCTTTCTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.10, C:0.11, G:0.03, T:0.76
Consensus pattern (28 bp):
TTTCTTATGTTTTTACTTTTTTTTACTT
Found at i:828054 original size:27 final size:28
Alignment explanation
Indices: 827998--828055 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
827988 TATGTTTTTA
** *
827998 CTTTTTTTTACTTTTTCTTATGTTTTTT
1 CTTTTTTTTACTTTTTCTTACCTTTCTT
828026 CTTTTTTTTACTTTTTCTT-CCTTTCTT
1 CTTTTTTTTACTTTTTCTTACCTTTCTT
828053 CTT
1 CTT
828056 CATCTTCCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (28 bp):
CTTTTTTTTACTTTTTCTTACCTTTCTT
Found at i:834325 original size:20 final size:20
Alignment explanation
Indices: 834297--834371 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
834287 TCATACCCTG
834297 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
834317 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
834337 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
834357 ATGTATCGATACATT
1 ATGTATCGATACATT
834372 ATGTCCTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:834364 original size:40 final size:39
Alignment explanation
Indices: 834297--834374 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
834287 TCATACCCTG
* *
834297 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
834337 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
834375 TCCTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:835641 original size:24 final size:24
Alignment explanation
Indices: 835612--835666 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 24
835602 GGGACATGTT
*
835612 AAAATGCATATGAAACATAAT-TAA
1 AAAATGCATATG-AACATAATAAAA
835636 AAAATGC--ATGAACATAATAAAA
1 AAAATGCATATGAACATAATAAAA
835658 AAAATGCAT
1 AAAATGCAT
835667 GGTCAACGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 8 0.30
22 12 0.44
24 7 0.26
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.22
Consensus pattern (24 bp):
AAAATGCATATGAACATAATAAAA
Found at i:837522 original size:18 final size:18
Alignment explanation
Indices: 837501--837535 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
837491 AAAAAAAAGC
837501 GAAAA-AAAAACAGAAAAA
1 GAAAAGAAAAA-AGAAAAA
837519 GAAAAGAAAAAAGAAAA
1 GAAAAGAAAAAAGAAAA
837536 TTTAGTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (18 bp):
GAAAAGAAAAAAGAAAAA
Found at i:837527 original size:23 final size:22
Alignment explanation
Indices: 837483--837530 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
837473 AAGGATTTGT
837483 AAAAACAAAAAAAAAAGCGAAAA
1 AAAAACAAAAAAAAAA-CGAAAA
837506 AAAAACAGAAAAAGAAAA-GAAAA
1 AAAAACA-AAAAA-AAAACGAAAA
837529 AA
1 AA
837531 GAAAATTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 14 0.61
24 5 0.22
25 4 0.17
ACGTcount: A:0.83, C:0.06, G:0.10, T:0.00
Consensus pattern (22 bp):
AAAAACAAAAAAAAAACGAAAA
Found at i:837875 original size:6 final size:6
Alignment explanation
Indices: 837860--837902 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
837850 AATAAGAAAC
*
837860 AAAA-A AAAAGA AAAAGA AAAAGA AGAA-A AAAA-A AAAAGA AAAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA
837903 AGAGAAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
5 13 0.38
6 21 0.62
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:837895 original size:22 final size:23
Alignment explanation
Indices: 837862--837911 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 23
837852 TAAGAAACAA
837862 AAAAAAAGAAAAAG-AAAAAGAAG
1 AAAAAAAGAAAAAGAAAAAAG-AG
837885 AAAAAAA-AAAAAGAAAAAAGAG
1 AAAAAAAGAAAAAGAAAAAAGAG
837907 AAAAA
1 AAAAA
837912 CATGAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (23 bp):
AAAAAAAGAAAAAGAAAAAAGAG
Found at i:837903 original size:15 final size:15
Alignment explanation
Indices: 837860--837896 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
837850 AATAAGAAAC
837860 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
* *
837875 GAAAAAGAAGAAAAA
1 AAAAAAAAAGAAAAA
837890 AAAAAAA
1 AAAAAAA
837897 GAAAAAAGAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAA
Found at i:837903 original size:29 final size:30
Alignment explanation
Indices: 837853--837910 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
837843 TTCTATAAAT
837853 AAGAAACAAAAAAAAAGAAAAAGA-AAAAG
1 AAGAAACAAAAAAAAAGAAAAAGAGAAAAG
837882 AAGAAA-AAAAAAAAAGAAAAAAGAGAAAA
1 AAGAAACAAAAAAAAAG-AAAAAGAGAAAA
837911 ACATGAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 10 0.37
29 13 0.48
30 4 0.15
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (30 bp):
AAGAAACAAAAAAAAAGAAAAAGAGAAAAG
Found at i:837909 original size:31 final size:28
Alignment explanation
Indices: 837853--837925 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 28
837843 TTCTATAAAT
*
837853 AAGAAACAAAAAAAAAGAAAAAGAAAAAG
1 AAGAAA-AAAAAAAAAGAAAAAGAAAAAC
837882 AAGAAAAAAAAAAAAGAAAAAAGAGAAAAAC
1 AAGAAAAAAAAAAAAG--AAAA-AGAAAAAC
* *
837913 ATGAAATAAAAAA
1 AAGAAAAAAAAAA
837926 GTGCAGATAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 10 0.26
29 6 0.16
30 4 0.11
31 18 0.47
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (28 bp):
AAGAAAAAAAAAAAAGAAAAAGAAAAAC
Found at i:839094 original size:44 final size:43
Alignment explanation
Indices: 838956--839104 Score: 124
Period size: 44 Copynumber: 3.4 Consensus size: 43
838946 TACTACATTA
* * *
838956 GCATTTGCATCT-TTTCAAATGCATTTATCATTCTATTGATGATT
1 GCATTTGCAT-TATTTCAAATGCATTT-GCATTTTATTGATGCTT
* ** *
839000 GCATTTGCATTATCTCACCTACATTTGCATTTTA--GATGACATT
1 GCATTTGCATTATTTCAAATGCATTTGCATTTTATTGATG-C-TT
* * *
839043 GGTATTTGCATTATTTCATATGCATTTGCCTTTTTATTGATGCTT
1 -GCATTTGCATTATTTCAAATGCATTTG-CATTTTATTGATGCTT
*
839088 GCATTTGCATCATTTCA
1 GCATTTGCATTATTTCA
839105 CACACATCTA
Statistics
Matches: 83, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
41 4 0.05
43 9 0.11
44 57 0.69
45 8 0.10
46 1 0.01
47 4 0.05
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (43 bp):
GCATTTGCATTATTTCAAATGCATTTGCATTTTATTGATGCTT
Found at i:843916 original size:79 final size:79
Alignment explanation
Indices: 843762--843954 Score: 190
Period size: 79 Copynumber: 2.4 Consensus size: 79
843752 GAGATAATAA
* * * * * * ** * *
843762 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATTCTCGGTTGTGAAAAATCGATGA
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTAGAATATCCCCAATTATGAAAAATCAATGA
*
843827 TTAGGAAATAAAAT
66 TTAGGAAATAAAAC
* * *
843841 CGTGATTTGAGTATCCCCTCGAAAATAACGGGGTTAGAATATCCCCAATTATGAGAAATCAAT-A
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTAGAATATCCCCAATTATGAAAAATCAATGA
* * *
843905 TTTTGGGAATAAAGC
66 -TTAGGAAATAAAAC
* **
843920 CGGGGTTGGAGTATCCCCTCGAAGGTAACGGGGTT
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTT
843955 GGAGTATTCC
Statistics
Matches: 91, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
78 1 0.01
79 90 0.99
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (79 bp):
CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTAGAATATCCCCAATTATGAAAAATCAATGA
TTAGGAAATAAAAC
Found at i:843960 original size:28 final size:27
Alignment explanation
Indices: 843920--843996 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 27
843910 GGAATAAAGC
* *
843920 CGGGGTTGGAGTATCCC-CTCGAAGGTAA
1 CGGGGTTGGAGTATCCCGAT-GAA-ATAA
843948 CGGGGTTGGAGTATTCCCGATGAAATAA
1 CGGGGTTGGAGTA-TCCCGATGAAATAA
*
843976 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCC-CGAT
843997 TGTGAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
27 3 0.07
28 32 0.74
29 7 0.16
30 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCGATGAAATAA
Found at i:844049 original size:52 final size:51
Alignment explanation
Indices: 843976--844112 Score: 186
Period size: 52 Copynumber: 2.6 Consensus size: 51
843966 GATGAAATAA
* *
843976 CGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGAGGTTGGAGTATCCTCGATTATGAAAAATTGGTG-TTTTGAAAATAAAAT
* * *
844028 C-AGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAT
1 CGAG-GTTGGAGTATCCTCGATT-ATGAAAAATTGGTGTTTTGAAAATAAAAT
*
844080 CGAGGTTGGAGTATCCTCGATTATGAACAATTG
1 CGAGGTTGGAGTATCCTCGATTATGAAAAATTG
844113 TGAAACTTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
51 10 0.14
52 50 0.68
53 13 0.18
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (51 bp):
CGAGGTTGGAGTATCCTCGATTATGAAAAATTGGTGTTTTGAAAATAAAAT
Found at i:846485 original size:13 final size:13
Alignment explanation
Indices: 846467--846492 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
846457 ACAAAGATCG
846467 ATGTATCGATACA
1 ATGTATCGATACA
846480 ATGTATCGATACA
1 ATGTATCGATACA
846493 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:846503 original size:21 final size:21
Alignment explanation
Indices: 846479--846520 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
846469 GTATCGATAC
846479 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
846500 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
846521 GGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:848432 original size:81 final size:79
Alignment explanation
Indices: 848248--848453 Score: 193
Period size: 81 Copynumber: 2.5 Consensus size: 79
848238 AAACATTAGA
* * * *
848248 AAGGGATACTCCAACCCTACCATTTTTGAA-GGGCTACTCCAACCCCGTCTTTACTTCCAAAAAT
1 AAGGGATACTCCAA-CCTACCA-TTTT-AAGGGGATACTCTAACCCCGTCTTTACTTCAAAAAAA
*
848312 ATCAAATTTACCATCTC
63 ATCAAATTTACCATATC
* * *
848329 AAGGGATACTCCAATCCCACCATTTCTAAGGGGATACTCTAACTCCGTTTTTACTTCTAAAAAAA
1 AAGGGATACTCCAA-CCTACCATTT-TAAGGGGATACTCTAACCCCGTCTTTACTTC-AAAAAAA
848394 ATCAAAATTT-CCATAT-
63 ATC-AAATTTACCATATC
** * **
848410 TTGGGGTACTCCAACCTTACCATCTTTGGGGGGATACTCTAACC
1 AAGGGATACTCCAACC-TACCAT-TTTAAGGGGATACTCTAACC
848454 TCGATTTTCA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
80 7 0.07
81 75 0.73
82 15 0.15
83 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (79 bp):
AAGGGATACTCCAACCTACCATTTTAAGGGGATACTCTAACCCCGTCTTTACTTCAAAAAAAATC
AAATTTACCATATC
Found at i:848786 original size:22 final size:22
Alignment explanation
Indices: 848756--848803 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
848746 CGTCCCTTTT
*
848756 TTTTATGT-ATTTTATTCATTTA
1 TTTTATGTAAATTTATTCA-TTA
*
848778 TTTTGTGTAAATTTATTCATTA
1 TTTTATGTAAATTTATTCATTA
848800 TTTT
1 TTTT
848804 CTTTTTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.67
Consensus pattern (22 bp):
TTTTATGTAAATTTATTCATTA
Found at i:857006 original size:34 final size:34
Alignment explanation
Indices: 856962--857081 Score: 165
Period size: 34 Copynumber: 3.6 Consensus size: 34
856952 AAGGAGATGT
* *
856962 CACCAACTTGTGTGGGCTTTAGAAAAGAGGTTGC
1 CACCAGCTTGTGTGGGCTTTAGAGAAGAGGTTGC
** *
856996 CGGCAGCTTGTGTGGGCTTTAGAGAAGAGATTGC
1 CACCAGCTTGTGTGGGCTTTAGAGAAGAGGTTGC
857030 CACCAGCTTGTGTGGGCTTTAGAGAA-AGG-TGC
1 CACCAGCTTGTGTGGGCTTTAGAGAAGAGGTTGC
*
857062 CACCAACTTGTGTGGG-TTTA
1 CACCAGCTTGTGTGGGCTTTA
857082 AAAGGATGCC
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 4 0.05
32 18 0.23
33 2 0.03
34 53 0.69
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (34 bp):
CACCAGCTTGTGTGGGCTTTAGAGAAGAGGTTGC
Found at i:857098 original size:29 final size:31
Alignment explanation
Indices: 856957--857130 Score: 162
Period size: 34 Copynumber: 5.5 Consensus size: 31
856947 CTTAAAAGGA
*
856957 GATGTCACCAACTTGTGTGGGCTTTAGAAAAGAG
1 GATGCCACCAACTTGTGTGGGCTTTAG--AA-AG
* ** *
856991 GTTGCCGGCAGCTTGTGTGGGCTTTAGAGAAG
1 GATGCCACCAACTTGTGTGGGCTTTAGA-AAG
*
857023 AGATTGCCACCAGCTTGTGTGGGCTTTAGAGAAAG
1 -GA-TGCCACCAACTTGTGTGGGCTTT--AGAAAG
857058 G-TGCCACCAACTTGTGTGGG-TTTA-AAAG
1 GATGCCACCAACTTGTGTGGGCTTTAGAAAG
*
857086 GATGCCACTAACTTGTGT--GCTTTA-AAAG
1 GATGCCACCAACTTGTGTGGGCTTTAGAAAG
*
857114 GATGCCACTAACTTGTG
1 GATGCCACCAACTTGTG
857131 GACTTTGAAA
Statistics
Matches: 123, Mismatches: 10, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
27 1 0.01
28 30 0.24
29 16 0.13
31 3 0.02
32 21 0.17
33 2 0.02
34 44 0.36
35 3 0.02
36 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (31 bp):
GATGCCACCAACTTGTGTGGGCTTTAGAAAG
Found at i:857109 original size:28 final size:28
Alignment explanation
Indices: 857040--857680 Score: 307
Period size: 28 Copynumber: 22.5 Consensus size: 28
857030 CACCAGCTTG
*
857040 TGTGGGCTTTAGAGAAAGG-TGCCACCAACT
1 TGTGGGCTTT--A-AAAGGATGCCACTAACT
*
857070 TGTGTGGGTTTAAAAGGATGCCACTAACT
1 TGTG-GGCTTTAAAAGGATGCCACTAACT
*
857099 TGTGTGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* * * * *
857127 TGTGGACTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* * * *
857155 TATGGGCTTTGAAATGAAGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* ** * * * *
857183 TGTAGAATTTGAAATGAAGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* * * * *
857211 TGTTGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* ** *
857239 AGTGGGCTTTGGAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* * * * *
857267 CGTAGGCTTTGAAAAAAAGATACCACCAACTT
1 TGTGGGCTTT---AAAAGGATGCCACTAAC-T
** *
857299 GTGTGGGCTTTGAAAAGG-TGCCGTTGACT
1 -TGTGGGCTTT-AAAAGGATGCCACTAACT
** * *
857328 TGTTAGTTTTGCAAA-GATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACT
** **** * *
857356 CATTAAATTTGAAAGGATGCCACTTACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* * *
857384 TATGGGCTTT----GAATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
** * *
857408 TGTGCCCCTTAAAAGGATGCCACTAACA
1 TGTGGGCTTTAAAAGGATGCCACTAACT
**
857436 TGTGGGCTTTGAAAAGG-TGCCACCGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACT
* ** *
857464 TATGGGCTTTAAAAAGG-TGTAACTAGCTT
1 TGTGGGCTTT-AAAAGGATGCCACTAAC-T
* * *
857493 GTGTGGGCTTTAGAAGAGGGCTGCCATTGACT
1 -TGTGGGCTTTA-AA-A-GGATGCCACTAACT
* *
857525 TGTGGGCTTTGAAAAGG-TGCCATTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACT
* * *
857553 TATGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* *
857581 TGTGGGCTTTGAAAAGG-TGCCACTGACG
1 TGTGGGCTTT-AAAAGGATGCCACTAACT
* *
857609 TGTAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* * *
857637 TGTGGGCTTTGAAAAAGG-TGACACTGACA
1 TGTGGGCTTT--AAAAGGATGCCACTAACT
857666 TGTGGGCTTTGAAAA
1 TGTGGGCTTT-AAAA
857681 AGGTGTCGTA
Statistics
Matches: 472, Mismatches: 113, Indels: 54
0.74 0.18 0.08
Matches are distributed among these distances:
24 18 0.04
27 14 0.03
28 313 0.66
29 49 0.10
30 26 0.06
31 34 0.07
32 5 0.01
33 13 0.03
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTAACT
Done.