Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold139
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1720190
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 4798 characters in sequence are not A, C, G, or T
File 7 of 11
Found at i:984749 original size:33 final size:33
Alignment explanation
Indices: 984707--984769 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
984697 AAGGAAATGA
984707 ATCGATACATT-ACTCAATGTATCGATACATTGT
1 ATCGATACATTGA-TCAATGTATCGATACATTGT
**
984740 ATCGATACATTGATCTTTGTATCGATACAT
1 ATCGATACATTGATCAATGTATCGATACAT
984770 CTGGGAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (33 bp):
ATCGATACATTGATCAATGTATCGATACATTGT
Found at i:991150 original size:19 final size:19
Alignment explanation
Indices: 991126--991163 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
991116 TGATCATATG
991126 TGTCTATTTTCTTTTGCAC
1 TGTCTATTTTCTTTTGCAC
991145 TGTCTATTTTCTTTTGCAC
1 TGTCTATTTTCTTTTGCAC
991164 CTTTATTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.11, T:0.58
Consensus pattern (19 bp):
TGTCTATTTTCTTTTGCAC
Found at i:991722 original size:25 final size:24
Alignment explanation
Indices: 991694--991741 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
991684 ACATCACAAG
*
991694 TAAAAACACAAAAAAAACAAAAAAA
1 TAAAAAAACAAAAAAAA-AAAAAAA
*
991719 TAAAAAAACAAAAATAAAAAAAA
1 TAAAAAAACAAAAAAAAAAAAAA
991742 CACACAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.06
Consensus pattern (24 bp):
TAAAAAAACAAAAAAAAAAAAAAA
Found at i:991723 original size:16 final size:16
Alignment explanation
Indices: 991703--991758 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 16
991693 GTAAAAACAC
991703 AAAAAAAACAAAAAAA
1 AAAAAAAACAAAAAAA
*
991719 TAAAAAAACAAAAATAA
1 AAAAAAAACAAAAA-AA
*
991736 AAAAAACACACAAAAAA
1 AAAAAAAACA-AAAAAA
*
991753 AGAAAA
1 AAAAAA
991759 GAGAGAGTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.38
17 17 0.50
18 4 0.12
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.04
Consensus pattern (16 bp):
AAAAAAAACAAAAAAA
Found at i:991723 original size:17 final size:16
Alignment explanation
Indices: 991703--991758 Score: 67
Period size: 16 Copynumber: 3.3 Consensus size: 16
991693 GTAAAAACAC
991703 AAAAAAAACAAAAAAA
1 AAAAAAAACAAAAAAA
*
991719 TAAAAAAACAAAAATAA
1 AAAAAAAACAAAAA-AA
991736 AAAAAACACACAAAAAAA
1 AAAAAA-A-ACAAAAAAA
*
991754 GAAAA
1 AAAAA
991759 GAGAGAGTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 13 0.38
17 7 0.21
18 7 0.21
19 7 0.21
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.04
Consensus pattern (16 bp):
AAAAAAAACAAAAAAA
Found at i:993087 original size:30 final size:31
Alignment explanation
Indices: 993031--993491 Score: 557
Period size: 30 Copynumber: 15.0 Consensus size: 31
993021 TCTTCAAATC
* *
993031 TCTTTCCTTCAAAGTCCATGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
*
993062 TCTTTTCTTCCAAGTCCAC-ACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
993092 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * *
993123 TCTCTT-TTCTAAGTCCATGACTTAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
993153 TCTTTTTTCTTCAAAGTCCACGACTCAGTGGCA
1 TC--TTTTCTTCAAAGTCCACGACTCAGTGGCA
*
993186 TCTCTTTC--CAAAGTCCATGACTCAGTGGCA
1 TCT-TTTCTTCAAAGTCCACGACTCAGTGGCA
* ** *
993216 CCACTT-TTCTAAGTCCACGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
*
993246 TCTTTTCTTCCAAGTCCACGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
993277 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * *
993308 TCTATT-TTCTAAGTCCACGACTTAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
*
993338 TCTTTTTTCTTCAAAGTCCACGACTTAGTGGCA
1 TC--TTTTCTTCAAAGTCCACGACTCAGTGGCA
*
993371 TCTCTTTC--CAAAGTCCAGGACTCAGTGGCA
1 TCT-TTTCTTCAAAGTCCACGACTCAGTGGCA
* * *
993401 CCTCTT-TTCTAAGTCCACGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* *
993431 TCTCTTTC--CAAAGTCTACGACGCAGTGGCA
1 TCT-TTTCTTCAAAGTCCACGACTCAGTGGCA
* *
993461 TCTTTTCTTCAAAGTCCACAACTCCGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
993492 CCTTATTCCT
Statistics
Matches: 369, Mismatches: 43, Indels: 36
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.02
30 187 0.51
31 112 0.30
32 14 0.04
33 48 0.13
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (31 bp):
TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
Found at i:993353 original size:185 final size:185
Alignment explanation
Indices: 993042--993491 Score: 771
Period size: 185 Copynumber: 2.4 Consensus size: 185
993032 CTTTCCTTCA
*
993042 AAGTCCATGACTCAGTGGCATCTTTTCTTCCAAGTCCAC-ACTCAGTGGCATCTTTTCTTCAAAG
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAG
* *
993106 TCCACGACTCAGTGGCATCTCTTTTCTAAGTCCATGACTTAGTGGCATCTTTTTTCTTCAAAGTC
66 TCCACGACTCAGTGGCATCTATTTTCTAAGTCCACGACTTAGTGGCATCTTTTTTCTTCAAAGTC
*
993171 CACGACTCAGTGGCATCTCTTTCCAAAGTCCATGACTCAGTGGCACCACTTTTCT
131 CACGACTCAGTGGCATCTCTTTCCAAAGTCCAGGACTCAGTGGCACCACTTTTCT
993226 AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAG
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAG
993291 TCCACGACTCAGTGGCATCTATTTTCTAAGTCCACGACTTAGTGGCATCTTTTTTCTTCAAAGTC
66 TCCACGACTCAGTGGCATCTATTTTCTAAGTCCACGACTTAGTGGCATCTTTTTTCTTCAAAGTC
* *
993356 CACGACTTAGTGGCATCTCTTTCCAAAGTCCAGGACTCAGTGGCACCTCTTTTCT
131 CACGACTCAGTGGCATCTCTTTCCAAAGTCCAGGACTCAGTGGCACCACTTTTCT
* * *
993411 AAGTCCACGACTCAGTGGCATCTCTTTC--CAAAGTCTACGACGCAGTGGCATCTTTTCTTCAAA
1 AAGTCCACGACTCAGTGGCATCT-TTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAA
* *
993474 GTCCACAACTCCGTGGCA
65 GTCCACGACTCAGTGGCA
993492 CCTTATTCCT
Statistics
Matches: 253, Mismatches: 11, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
184 86 0.34
185 163 0.64
186 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (185 bp):
AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAG
TCCACGACTCAGTGGCATCTATTTTCTAAGTCCACGACTTAGTGGCATCTTTTTTCTTCAAAGTC
CACGACTCAGTGGCATCTCTTTCCAAAGTCCAGGACTCAGTGGCACCACTTTTCT
Found at i:993417 original size:215 final size:214
Alignment explanation
Indices: 993031--993491 Score: 649
Period size: 215 Copynumber: 2.1 Consensus size: 214
993021 TCTTCAAATC
* * * *
993031 TCTTTCCTTCAAAGTCCATGACTCAGTGGCATCTTTTCTTCCAAGTCCACACTCAGTGGCATCTT
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACACTCAGTGGCATCTA
* *
993096 TTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTTCTAAGTCCATGACTTAGTGGCATCTTTTTT
66 TTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTTCTAAGTCCACGACTTAGTGGCATCTTCTTT
* * * *
993161 CTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCATGACTCAGTGGCACCACTTTTCT
131 C-TCAAAGTCCACGACTCAGTGGCACCTCTTTCCAAAGTCCACGACTCAGTGGCACCACTTTCCA
*
993226 AAGTCCACGACTCAGTGGCA
195 AAGTCCACGACGCAGTGGCA
*
993246 TCTTTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCT
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCAC-ACTCAGTGGCATCT
* * *
993311 ATT-TTCTAAGTCCACGACTTAGTGGCATCTTTTTTCTTCAAAGTCCACGACTTAGTGGCATC-T
65 ATTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTTC-T--AAGTCCACGACTTAGTGGCATCTT
* * * * *
993374 CTTTC-CAAAGTCCAGGACTCAGTGGCACCTCTTTTCTAAGTCCACGACTCAGTGGCATCTCTTT
127 CTTTCTCAAAGTCCACGACTCAGTGGCACCTCTTTCCAAAGTCCACGACTCAGTGGCACCACTTT
*
993438 CCAAAGTCTACGACGCAGTGGCA
192 CCAAAGTCCACGACGCAGTGGCA
* *
993461 TCTTTTCTTCAAAGTCCACAACTCCGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
993492 CCTTATTCCT
Statistics
Matches: 218, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
215 175 0.80
216 17 0.08
217 5 0.02
218 21 0.10
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (214 bp):
TCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACACTCAGTGGCATCTA
TTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTTCTAAGTCCACGACTTAGTGGCATCTTCTTT
CTCAAAGTCCACGACTCAGTGGCACCTCTTTCCAAAGTCCACGACTCAGTGGCACCACTTTCCAA
AGTCCACGACGCAGTGGCA
Found at i:993537 original size:34 final size:35
Alignment explanation
Indices: 993472--993666 Score: 244
Period size: 34 Copynumber: 5.8 Consensus size: 35
993462 CTTTTCTTCA
* *
993472 AAGTCCACAAC-TCCGTGGCAC-CTTATTCCTTTT
1 AAGTCCACAACTTCTGTGGCACTCTTTTTCCTTTT
* * *
993505 AAGTCCATAACTTC-GTAGCATTCTTTTTCCTTTT
1 AAGTCCACAACTTCTGTGGCACTCTTTTTCCTTTT
*
993539 AAGTCCACAAC-TCCGTGGCAC-CTTTTTCCTTTT
1 AAGTCCACAACTTCTGTGGCACTCTTTTTCCTTTT
* *
993572 AAAGCCCACAAC-TCTGTGGCACTCTGTTTCCTTTT
1 -AAGTCCACAACTTCTGTGGCACTCTTTTTCCTTTT
993607 AAGTCCACAAC-TCTGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTTCTGTGGCACTCTTTTTCCTTTT
*
993641 AAGTCCACAAC-TCTGTGGCACCCTTT
1 AAGTCCACAACTTCTGTGGCACTCTTT
993667 AAAGTCTATA
Statistics
Matches: 144, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
33 29 0.20
34 104 0.72
35 11 0.08
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (35 bp):
AAGTCCACAACTTCTGTGGCACTCTTTTTCCTTTT
Found at i:993632 original size:102 final size:101
Alignment explanation
Indices: 993471--993662 Score: 289
Period size: 102 Copynumber: 1.9 Consensus size: 101
993461 TCTTTTCTTC
* * *
993471 AAAGTCCACAACTCCGTGGCACCTTATTCCTTTTAAGTCCATAACTTCGTAGCATTCTTTTTCCT
1 AAAGCCCACAACTCCGTGGCACCTTATTCCTTTTAAGTCCACAACTTCGTAGCACTCTTTTTCCT
993536 TTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
66 TTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
993572 AAAGCCCACAACTCTGTGGCACTCTGT-TTCCTTTTAAGTCCACAAC-TCTGTGGCACTCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CT-TATTCCTTTTAAGTCCACAACTTC-GTAGCACTCTTTTT
*
993635 CCTTTTAAGTCCACAACTCTGTGGCACC
63 CCTTTTAAGTCCACAACTCCGTGGCACC
993663 CTTTAAAGTC
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
101 22 0.27
102 59 0.72
103 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (101 bp):
AAAGCCCACAACTCCGTGGCACCTTATTCCTTTTAAGTCCACAACTTCGTAGCACTCTTTTTCCT
TTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:993649 original size:68 final size:67
Alignment explanation
Indices: 993472--993661 Score: 283
Period size: 68 Copynumber: 2.8 Consensus size: 67
993462 CTTTTCTTCA
* * * * *
993472 AAGTCCACAACTCCGTGGCACCTTATTCCTTTTAAGTCCATAACT-TCGTAGCATTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCT-GTGGCACTCTGTTTCCT
993536 TTT
65 TTT
*
993539 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCTGTGGCACTCTGTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGTCCACAACTCTGTGGCACTCTGTTTCCT
993604 TTT
65 TTT
*
993607 AAGTCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCTGTGGCAC
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCTGTGGCAC
993662 CCTTTAAAGT
Statistics
Matches: 112, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
67 32 0.29
68 67 0.60
69 13 0.12
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.36
Consensus pattern (67 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACTCTGTTTCCTT
TT
Found at i:993668 original size:26 final size:25
Alignment explanation
Indices: 993638--993699 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 25
993628 TCTTTTTCCT
*
993638 TTTAAGTCCACAACTCTGTGGCACCC
1 TTTAAGTCCACAACTCCGTGGCA-CC
* *
993664 TTTAAAGTCTATAACTCCGTGGCACC
1 TTT-AAGTCCACAACTCCGTGGCACC
993690 TTTAAGTCCA
1 TTTAAGTCCA
993700 ATATCGCTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 6 0.19
26 8 0.26
27 17 0.55
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (25 bp):
TTTAAGTCCACAACTCCGTGGCACC
Found at i:993843 original size:87 final size:89
Alignment explanation
Indices: 993692--994823 Score: 695
Period size: 101 Copynumber: 12.0 Consensus size: 89
993682 GTGGCACCTT
* *
993692 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
993757 GCCTTAAATCAGCACATTGGCA-C
66 GCCTTGAATCAGCACATTGGCATC
* *
993780 -AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATTAAGACCAATGTCGCTG
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
993844 GCCTTGAATCAGCATATTGGCACCCTTGTC
66 GCCTTGAATCAGCACATTGGCA------TC
* * * * * *
993874 ATTAAGACCAATGTCGCTAGCCTTGAATCAACACATTGGCA----G-CTTTAAGTCCAATATCGC
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGC
*
993934 TGGCCTTGAATCAGCATATTGGCACTTTGTC
64 TGGCCTTGAATCAGCACATTGGCA-----TC
* * * * * *
993965 TTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCA------C---AAGCCCAATATCGT
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGC
* * *
994021 TGGCCTTGAATCAACACATTGGAACCTT
64 TGGCCTTGAATCAGCACATTGG--CATC
* *
994049 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTG
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
994114 GCCTTGAATCAGCACATTGGCA-C
66 GCCTTGAATCAGCACATTGGCATC
* * * *
994137 -AAG-CCTAGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTCGT
1 TAAGACC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGC
**
994200 TGGCCTTGAATCAGCACATCGACACCTCAACCATC
64 TGGCCTTGAATCAGCACAT-------T--GGCATC
* * * ** *
994235 TTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACATCATCTTTAAGTCCAATGTCGC
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGC
*
994300 TAGCCTTGAATCAGCACATTGGCATCTTCATC
64 TGGCCTTGAATCAGCACATTGG------CATC
* * * * * * * *
994332 TTTAAGTCTAGTGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATGTCG
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCG
994397 CTGGCCTTGAATCAGCACATTGGCACCTTCATC
63 CTGGCCTTGAATCAGCACATTGG------CATC
* * * *
994430 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATG
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G---TCTTTAAGACCAATG
* *
994495 TCGCTGGCCTTGAATCAACATATTGGCATCTTCATC
60 TCGCTGGCCTTGAATCAGCACATTGG------CATC
* *** * *
994531 TTTAAGTCTGGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATG
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G---TCTTTAAGACCAATG
994596 TCGCTGGCCTTGAATCA-CTACATTGGCATCTTCATC
60 TCGCTGGCCTTGAATCAGC-ACATTGG------CATC
** * * ** *
994632 TTTAAGTTCGATATCGCTAGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGACCAATGCCG
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCG
994697 CTGGCCTTGAATCAGCACATTGGCACCTTCATC
63 CTGGCCTTGAATCAGCACATTGG------CATC
* * * ** *
994730 TTTAAGTCCAATATCGTTGGCCCTGAATCAGCATATTGGCGTCTT-TAACATTCCTAAGCCCAAT
1 --TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--C-TT--TAAGACCAAT
**
994794 GTCGCTGGCCTTGTCTCAGCACATTGGCAT
59 GTCGCTGGCCTTGAATCAGCACATTGGCAT
994824 TCTTCTTCAA
Statistics
Matches: 892, Mismatches: 97, Indels: 103
0.82 0.09 0.09
Matches are distributed among these distances:
82 35 0.04
84 1 0.00
86 2 0.00
87 151 0.17
88 38 0.04
89 2 0.00
90 1 0.00
91 75 0.08
92 39 0.04
93 2 0.00
94 1 0.00
95 4 0.00
96 1 0.00
97 77 0.09
98 173 0.19
99 3 0.00
100 36 0.04
101 248 0.28
102 3 0.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (89 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCATC
Found at i:993890 original size:49 final size:48
Alignment explanation
Indices: 993784--994822 Score: 939
Period size: 49 Copynumber: 21.7 Consensus size: 48
993774 TGGCACAAGC
* * * *
993784 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
* * *
993832 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCCTTGTCATTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CCTTATCTTTAAGT
* * * *
993881 CCAATGTCGCTAGCCTTGAATCAACACATTGG---C--AGCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
* * * *
993924 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTGTCTTTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
* * *
993972 CCAATGTCGCTGGCCTTGAATTAGCACATTGG---C--A-C---AAGC
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
* * * * *
994011 CCAATATCGTTGGCCTTGAATCAACACATTGG-A----ACCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
* *
994054 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
* * * *
994102 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-AAGC-CT-AGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
*
994146 ---A--TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGT
* * * * * *
994190 CCGATGTCGTTGGCCTTGAATCAGCACATCGACACCTCAACCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCT----TATCTTTAAGT
* * * *
994242 CCAATATCACTGGCCTTGAATCAGCATATTGGCACATCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
* * *
994290 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGT
* * * *
994339 CTAGTGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGT
*
994388 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGT
* * *
994437 CCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-T--T-ATCTTTAAGT
* *
994489 CCAATGTCGCTGGCCTTGAATCAACATATTGGCATCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGT
*** * *
994538 CTGGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-T--T-ATCTTTAAGT
* *
994590 CCAATGTCGCTGGCCTTGAATCA-CTACATTGGCATCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGC-ATATTGGCACCTT-ATCTTTAAGT
* * * * * *
994639 TCGATATCGCTAGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TTATCTTTAAGT
* *
994688 CCAATGCCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGT
* * * * * * *
994737 CCAATATCGTTGGCCCTGAATCAGCATATTGGCGTCTTTAACATTCCTAAGC
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGC-ACCTTATC-TT--TAAGT
** *
994789 CCAATGTCGCTGGCCTTGTCTCAGCACATTGGCA
1 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
994823 TTCTTCTTCA
Statistics
Matches: 821, Mismatches: 125, Indels: 87
0.79 0.12 0.08
Matches are distributed among these distances:
39 59 0.07
40 2 0.00
41 1 0.00
42 3 0.00
43 67 0.08
44 5 0.01
45 2 0.00
46 2 0.00
47 2 0.00
48 152 0.19
49 363 0.44
50 9 0.01
51 3 0.00
52 151 0.18
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (48 bp):
CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGT
Found at i:994114 original size:130 final size:132
Alignment explanation
Indices: 993881--994722 Score: 605
Period size: 150 Copynumber: 6.0 Consensus size: 132
993871 GTCATTAAGA
* * *
993881 CCAATGTCGCTAGCCTTGAATCAACACATTGG--CAGCTTTAAGTCCAATATCGCTGGCCTTGAA
1 CCAATATCGCTGGCCTTGAATCAACACATTGGCACATCTTTAAGTCCAATATCGCTGGCCTTGAA
* * * *
993944 TCAGCATATTGGCACTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCACAA
66 TCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAA
994009 GC
131 GC
* *
994011 CCAATATCGTTGGCCTTGAATCAACACATTGG-A-ACCTTTAAGTCCAATATCGCTGGCCTTGAA
1 CCAATATCGCTGGCCTTGAATCAACACATTGGCACATCTTTAAGTCCAATATCGCTGGCCTTGAA
*
994074 TCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAA
66 TCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAA
994139 GC
131 GC
* * * * * * * *
994141 CTAGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTCGTTGGCCT
1 CCAATATCGCTGGCCTTGAATCAACACATTGGCA----CATCTTTAAGTCCAATATCGCTGGCCT
* * * * * * *
994206 TGAATCAGCACATCGACACCTCAACCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCATAT
62 TGAATCAGCACATTGGCACCT----TATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
*
994271 TGGCACATCATCTTTAAGT
123 TGG-----CA-C---AAGC
* * * * * *
994290 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCTAGTGTCGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAACACATTGGCA----CATCTTTAAGTCCAATATCGCTGGCCT
* *
994355 TGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG
62 TGAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
*
994420 CACCTTCATCTTTAAGT
126 ------CA-C---AAGC
* * * * *
994437 CCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGG
1 CCAATATCGCTGGCCTTGAATCAACACATT-G-G----C-ACATCTTTAAGTCCAATATCGCTGG
* * * * *** * *
994502 CCTTGAATCAACATATTGGCATCTTCATCTTTAAGTCTGGTATCGCTGGCCTTGAATCAGCATAT
59 CCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
*
994567 TGGCGCCTTCGTCATCTTTAAGT
123 T---G-----G-CA-C---AAGC
* * * *
994590 CCAATGTCGCTGGCCTTGAATC-ACTACATTGGCATCTTCATCTTTAAGTTCGATATCGCTAGCC
1 CCAATATCGCTGGCCTTGAATCAAC-ACATTGGCA----CATCTTTAAGTCCAATATCGCTGGCC
* * *
994654 TTGAATCAGCATATTGGCACCGTCATCTTTAAGACCAATGCCGCTGGCCTTGAATCAGCACATTG
61 TTGAATCAGCACATTGGCACC-TTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
994719 GCAC
125 GCAC
994723 CTTCATCTTT
Statistics
Matches: 589, Mismatches: 80, Indels: 76
0.79 0.11 0.10
Matches are distributed among these distances:
130 149 0.25
131 1 0.00
136 39 0.07
140 39 0.07
141 2 0.00
142 1 0.00
145 2 0.00
146 40 0.07
147 41 0.07
148 1 0.00
149 76 0.13
150 155 0.26
151 2 0.00
152 2 0.00
153 38 0.06
158 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (132 bp):
CCAATATCGCTGGCCTTGAATCAACACATTGGCACATCTTTAAGTCCAATATCGCTGGCCTTGAA
TCAGCACATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAA
GC
Found at i:994520 original size:101 final size:100
Alignment explanation
Indices: 994145--994866 Score: 833
Period size: 101 Copynumber: 7.3 Consensus size: 100
994135 ACAAGCCTAG
* * * *
994145 TATCGCTGGCCTTGAATCAGCATATTGGCACCT--TCATCTTTAAGACCGATGTCGTTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
* * *
994208 AATCAGCACATCGACACCTCAACCATCTTTAAGTCCAA
66 AATCAGCACATTGGCACCT---TCATCTTTAAGTCCAA
* * * *
994246 TATCACTGGCCTTGAATCAGCATATT-G-G-CACATCATCTTTAAGTCCAATGTCGCTAGCCTTG
1 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
* * *
994308 AATCAGCACATTGGCATCTTCATCTTTAAGTCTAG
66 AATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
* * * *
994343 TGTCGCTGGCCTTGAATCAGCACATT-G-GCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
994406 AATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
66 AATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
*
994441 TATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTT
1 TATCGCTGGCCTTGAATCAGCATATTGGCGCC-TCGTCATCTTTAAGTCCAATGTCGCTGGCCTT
* * * ***
994506 GAATCAACATATTGGCATCTTCATCTTTAAGTCTGG
65 GAATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
994542 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTT
1 TATCGCTGGCCTTGAATCAGCATATTGGCGCC-TCGTCATCTTTAAGTCCAATGTCGCTGGCCTT
* * *
994607 GAATCA-CTACATTGGCATCTTCATCTTTAAGTTCGA
65 GAATCAGC-ACATTGGCACCTTCATCTTTAAGTCCAA
* * * *
994643 TATCGCTAGCCTTGAATCAGCATATTGGC-AC-CGTCATCTTTAAGACCAATGCCGCTGGCCTTG
1 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
994706 AATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
66 AATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
* * * * * *
994741 TATCGTTGGCCCTGAATCAGCATATTGGCGTCT-TTAACAT-TCCTAAGCCCAATGTCGCTGGCC
1 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTCGT--CATCT-TTAAGTCCAATGTCGCTGGCC
** * * *
994804 TTGTCTCAGCACATTGGCA--TTCTTCTTCAAGTCTAA
63 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
* * * * *
994840 TCTCGCTGGTCGTGGATCAGCACATTG
1 TATCGCTGGCCTTGAATCAGCATATTG
994867 TCATTCTTTG
Statistics
Matches: 543, Mismatches: 65, Indels: 28
0.85 0.10 0.04
Matches are distributed among these distances:
97 38 0.07
98 172 0.32
99 39 0.07
100 48 0.09
101 246 0.45
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (100 bp):
TATCGCTGGCCTTGAATCAGCATATTGGCGCCTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
AATCAGCACATTGGCACCTTCATCTTTAAGTCCAA
Found at i:994550 original size:199 final size:196
Alignment explanation
Indices: 993689--994866 Score: 1098
Period size: 199 Copynumber: 6.2 Consensus size: 196
993679 TCCGTGGCAC
*
993689 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTC-TC--TAAGACCAATG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TGTCATCTTTAAGACCAATG
* *
993751 TCGCTGGCCTTAAATCAGCACATTGG-----CA-C---AAGCCCAATATCGCTGGCCTTGAATCA
65 TCGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
* * * *
993807 GCATATTGGCACCTT-GTCATTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCCTT
130 GCATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT
*
993871 -GT
194 CAT
* * * * * * * * *
993873 CATTAAGACCAATGTCGCTAGCCTTGAATCAACACATT---G---G-CAGCTTTAAGTCCAATAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTAAGACCAATGT
* ** * * *
993931 CGCTGGCCTTGAATCAGCATATTGGCACTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATTAG
66 CGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
* * * * *
993996 CACATTGG------CA-C---AAGCCCAATATCGTTGGCCTTGAATCAACACATTGG-A-----A
131 CATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
*
994045 C
196 T
*
994046 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT-T-ATCTTTAAGACCAATGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTAAGACCAATGT
*
994109 CGCTGGCCTTGAATCAGCACATTGG-----CA-C---AAG-CCTAGTATCGCTGGCCTTGAATCA
66 CGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCC-AATATCGCTGGCCTTGAATCA
* * * * *
994164 GCATATTGGCACCTTCATCTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACATCGACACCTCA
130 GCATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT--
*
994229 ACCAT
193 -TCAT
* * * *
994234 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGC-AC-ATCATCTTTAAGTCCAATGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTAAGACCAATGT
* * * *
994297 CGCTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCTAGTGTCGCTGGCCTTGAATCA
66 CGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
* *
994362 GCACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTC
130 GCATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTC
994427 AT
195 AT
* *
994429 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-T-GTCATCTTTAAGACCAAT
* * ***
994494 GTCGCTGGCCTTGAATCAACATATTGGCATCTTCATCTTTAAGTCTGGTATCGCTGGCCTTGAAT
64 GTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAAT
* * *
994559 CAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCA-CTACATTGGC
128 CAGCATATT-G-G-CATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGC-ACATTGGC
*
994623 ATCTTCAT
189 ACCTTCAT
* * * * *
994631 CTTTAAGTTCGATATCGCTAGCCTTGAATCAGCATATTGGCACC-GTCATCTTTAAGACCAATGC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTAAGACCAATGT
* *
994695 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCCTGAATCA
66 CGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
* * * * **
994760 GCATATTGGCGTCTTTAACATTCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTGGCA--
130 GCATATTGGCATCTTCATC-TT--TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
*
994823 TTCTT
192 TTCAT
* * * * * * *
994828 CTTCAAGTCTAATCTCGCTGGTCGTGGATCAGCACATTG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
994867 TCATTCTTTG
Statistics
Matches: 819, Mismatches: 110, Indels: 117
0.78 0.11 0.11
Matches are distributed among these distances:
168 2 0.00
169 29 0.04
172 1 0.00
173 32 0.04
175 2 0.00
176 2 0.00
177 2 0.00
178 39 0.05
179 94 0.11
180 1 0.00
182 1 0.00
184 32 0.04
185 1 0.00
187 2 0.00
188 113 0.14
194 2 0.00
195 43 0.05
196 7 0.01
197 36 0.04
198 80 0.10
199 202 0.25
200 2 0.00
201 2 0.00
202 92 0.11
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (196 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTAAGACCAATGT
CGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
CATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
T
Found at i:994822 original size:300 final size:295
Alignment explanation
Indices: 993689--994828 Score: 1097
Period size: 300 Copynumber: 4.0 Consensus size: 295
993679 TCCGTGGCAC
* * ** * *
993689 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCG
1 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACATCATCTTTAAGTCCAATGTCG
* * **
993754 CTGGCCTTAAATCAGCACATTGG------CA-C---AAGCCCAATATCGCTGGCCTTGAATCAGC
66 CTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTTCAATATCGCTGGCCTTGAATCAGC
** * * *
993809 ATATTGGCACCTTGTCATTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCCTT-GT
131 ATATTGGCACCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTCAT
* * * * * * * * * *
993873 CATTAAGACCAATGTCGCTAGCCTTGAATCAACACATT-G-G----CAGC-TT-TAAGTCCAATA
195 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCATCATTCTAAGACCAATG
* *
993930 TCGCTGGCCTTGAATCAGCATATTGGCACT-TT-GT
260 TCGCTGGCCTTGAATCAGCACATTGGCACTCTTCAT
* * * * * * *
993964 CTTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGG-----CA-C---AAGCCCAATATCG
1 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACATCATCTTTAAGTCCAATGTCG
* * * * *
994020 TTGGCCTTGAATCAACACATTGG-A-----ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
66 CTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTTCAATATCGCTGGCCTTGAATCAGC
*
994079 ATATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG------CA-C
131 ATATTGGCACCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * *
994137 ---AAG-CCTAGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TT-TAAGACCGATG
196 TTTAAGTCC-AATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCATCATTCTAAGACCAATG
* * * **
994196 TCGTTGGCCTTGAATCAGCACATCGACACCTCAACCAT
260 TCGCTGGCCTTGAATCAGCACATTGGCA-CTC-TTCAT
994234 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACATCATCTTTAAGTCCAATGTCG
1 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACATCATCTTTAAGTCCAATGTCG
* *
994299 CTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAG-TCTAGTGTCGCTGGCCTTGAATCAG
66 CTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTTC-AATATCGCTGGCCTTGAATCAG
* * *
994363 CACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
130 CATATTGGCA-CCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * *
994428 TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAA
194 TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCATCAT-TCTAAGACCAA
* *
994493 TGTCGCTGGCCTTGAATCAACATATTGGCA-TCTTCAT
258 TGTCGCTGGCCTTGAATCAGCACATTGGCACTCTTCAT
*** * * *
994530 CTTTAAGTCTGGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATT-G-G-C-ACATCATCTTTAAGTCCAAT
* * *
994595 GTCGCTGGCCTTGAATCA-CTACATTGGCATCTTCATCTTTAAGTTCGATATCGCTAGCCTTGAA
62 GTCGCTAGCCTTGAATCAGC-ACATTGGCATCTTCATCTTTAAGTTCAATATCGCTGGCCTTGAA
*
994659 TCAGCATATTGGCACCGTCATCTTTAAGACCAATGCCGCTGGCCTTGAATCAGCACATTGGCACC
126 TCAGCATATTGGCACC-TCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
* * * * *
994724 TTCATCTTTAAGTCCAATATCGTTGGCCCTGAATCAGCATATTGGCGTCTTTAACATTCCTAAGC
190 TTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCATCATT-CTAAGA
** *
994789 CCAATGTCGCTGGCCTTGTCTCAGCACATTGGCATTCTTC
254 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTCTTC
994829 TTCAAGTCTA
Statistics
Matches: 718, Mismatches: 90, Indels: 88
0.80 0.10 0.10
Matches are distributed among these distances:
259 2 0.00
260 26 0.04
261 1 0.00
263 1 0.00
266 69 0.10
267 3 0.00
269 1 0.00
270 116 0.16
275 38 0.05
276 1 0.00
279 31 0.04
280 1 0.00
284 1 0.00
285 37 0.05
286 43 0.06
292 2 0.00
293 1 0.00
296 76 0.11
297 6 0.01
298 2 0.00
299 36 0.05
300 217 0.30
301 7 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (295 bp):
CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACATCATCTTTAAGTCCAATGTCG
CTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTTCAATATCGCTGGCCTTGAATCAGC
ATATTGGCACCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCATCATTCTAAGACCAATGT
CGCTGGCCTTGAATCAGCACATTGGCACTCTTCAT
Found at i:998090 original size:85 final size:85
Alignment explanation
Indices: 998001--998220 Score: 219
Period size: 85 Copynumber: 2.6 Consensus size: 85
997991 TTTACCCAAA
* *
998001 ACTAAGCCAACAAATAAACAAAGGATAAAAAGGTTGACCAAGATTGAACCAACAAGTCAATAAAG
1 ACTAAGCCAACAAGTAAACAAAGGATAAAAAGGTTGACCAAGATTGAACCAACAAGTCAACAAAG
* *
998066 GATGAAAAAG-GTTACTTGAG
66 GAT-AAAAAGAGTTAATCGAG
** * * * * * * * *
998086 ACTAAATCAATAAGTAAACAAAGGAT-AAAAGAGTTAATCGAGATTGAATCGAGAAGTTAACAAA
1 ACTAAGCCAACAAGTAAACAAAGGATAAAAAG-GTTGACCAAGATTGAACCAACAAGTCAACAAA
* *
998150 GGATAAAAAGATTTAATCGGG
65 GGATAAAAAGAGTTAATCGAG
** * * *
998171 ACTAAGCTTACAGGTAAACAAAAGATAAAAAGGTTGACCAAGAATGAACC
1 ACTAAGCCAACAAGTAAACAAAGGATAAAAAGGTTGACCAAGATTGAACC
998221 GATAAGTCGA
Statistics
Matches: 104, Mismatches: 28, Indels: 6
0.75 0.20 0.04
Matches are distributed among these distances:
84 11 0.11
85 88 0.85
86 5 0.05
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.18
Consensus pattern (85 bp):
ACTAAGCCAACAAGTAAACAAAGGATAAAAAGGTTGACCAAGATTGAACCAACAAGTCAACAAAG
GATAAAAAGAGTTAATCGAG
Found at i:998109 original size:43 final size:43
Alignment explanation
Indices: 998015--998175 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 43
998005 AGCCAACAAA
* * * * * * *
998015 TAAACAAAGGATAAAAAG-GTTGACCAAGATTGAACCAACAAG
1 TAAACAAAGGATAAAAAGAGTTAATCGAGACTAAATCAAGAAG
* * * * *
998057 TCAATAAAGGATGAAAAAG-GTTACTTGAGACTAAATCAATAAG
1 TAAACAAAGGAT-AAAAAGAGTTAATCGAGACTAAATCAAGAAG
* * *
998100 TAAACAAAGGAT-AAAAGAGTTAATCGAGATTGAATCGAGAAG
1 TAAACAAAGGATAAAAAGAGTTAATCGAGACTAAATCAAGAAG
* * *
998142 TTAACAAAGGATAAAAAGATTTAATCGGGACTAA
1 TAAACAAAGGATAAAAAGAGTTAATCGAGACTAA
998176 GCTTACAGGT
Statistics
Matches: 92, Mismatches: 24, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
41 5 0.05
42 39 0.42
43 48 0.52
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.20
Consensus pattern (43 bp):
TAAACAAAGGATAAAAAGAGTTAATCGAGACTAAATCAAGAAG
Found at i:998331 original size:40 final size:40
Alignment explanation
Indices: 998217--998345 Score: 133
Period size: 40 Copynumber: 3.3 Consensus size: 40
998207 ACCAAGAATG
*
998217 AACCGAT-AAGTCGACCAATT--AAGGTTGGCCAGGGCAA
1 AACCGATAAAGTCAACCAATTGAAAGGTTGGCCAGGGCAA
* ** *
998254 AACCGATAAAGCTGATAGGTAA--GAAAGGTTGACCAGGGCAA
1 AACCGATAAAG-TCA-A-CCAATTGAAAGGTTGGCCAGGGCAA
*
998295 AACCAATAAAGTCAACCAATTGAAAGGTTGGCCAGGGCAA
1 AACCGATAAAGTCAACCAATTGAAAGGTTGGCCAGGGCAA
*
998335 AATCGATAAAG
1 AACCGATAAAG
998346 CCAAACAAGA
Statistics
Matches: 72, Mismatches: 12, Indels: 13
0.74 0.12 0.13
Matches are distributed among these distances:
37 7 0.10
38 5 0.07
39 2 0.03
40 30 0.42
41 28 0.39
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.16
Consensus pattern (40 bp):
AACCGATAAAGTCAACCAATTGAAAGGTTGGCCAGGGCAA
Found at i:998510 original size:46 final size:45
Alignment explanation
Indices: 998347--998691 Score: 212
Period size: 46 Copynumber: 7.5 Consensus size: 45
998337 TCGATAAAGC
** * * * *
998347 CAAACAAGAACGAAAATGGTTTGACTAAGGTGGTAATTAATACAGT
1 CAAACAAGAATAAAAAGGGTTTGACTAGGGTGGTAA-TGATATAGT
* ** * * ** *
998393 TAAATGAGAATGAAAAA-GGTTAGACTAGGGTGATGACCGATACAGT
1 CAAACAAGAAT-AAAAAGGGTTTGACTAGGGTGGT-AATGATATAGT
* ** * * * *
998439 TAAATGAGGATGAAAAGAGTTTGACTATGGTGGTAACTGATATAGT
1 CAAACAAGAATAAAAAGGGTTTGACTAGGGTGGTAA-TGATATAGT
*
998485 CAAACATA-AATAAAAAGGGTGTGACTAGGGTGGTAATCGATATTA-T
1 CAAACA-AGAATAAAAAGGGTTTGACTAGGGTGGTAAT-GATA-TAGT
* * *
998531 CAAACAAGAATGAAAAGGGTTTGACCAGGGTGGTAATTA-ATACGAT
1 CAAACAAGAATAAAAAGGGTTTGACTAGGGTGGTAATGATATA-G-T
* ** * * *
998577 CAAATAAGAACGAAAAGGGTTTGACCAGGGTAGTAATCGATCTAGT
1 CAAACAAGAATAAAAAGGGTTTGACTAGGGTGGTAAT-GATATAGT
** * * *
998623 CAAATGATAATAAAAAGGGTTTGACTAGGGTGATAACCGATATAGT
1 CAAACAAGAATAAAAAGGGTTTGACTAGGGTGGTAA-TGATATAGT
** *
998669 CAAAGGAGAATGAAAAGGGTTTG
1 CAAACAAGAATAAAAAGGGTTTG
998692 TTTGGTAAAG
Statistics
Matches: 236, Mismatches: 49, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
43 2 0.01
44 1 0.00
45 8 0.03
46 213 0.90
47 10 0.04
48 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.26, T:0.24
Consensus pattern (45 bp):
CAAACAAGAATAAAAAGGGTTTGACTAGGGTGGTAATGATATAGT
Found at i:998526 original size:92 final size:92
Alignment explanation
Indices: 998335--998672 Score: 240
Period size: 92 Copynumber: 3.7 Consensus size: 92
998325 GCCAGGGCAA
* * ** * * * * * * * **
998335 AATCGATAAAGCCAAACAAGAACGAAAATGGTTTGACTAAGGTGGTAATTAATACAGTTAAATGA
1 AATCGATACAGTCAAATGAGAATGAAAAGGGTTTGACTAGGGTGGTAACTGATATAGTCAAACAA
* *
998400 GAATGAAAAA-GGT-TAGACTAGGGTGAT
66 GAA-CAAAAAGGGTGT-GACTAGGGTGGT
* * * * * *
998427 GACCGATACAGTTAAATGAGGATGAAAAGAGTTTGACTATGGTGGTAACTGATATAGTCAAACAT
1 AATCGATACAGTCAAATGAGAATGAAAAGGGTTTGACTAGGGTGGTAACTGATATAGTCAAACA-
*
998492 A-AATAAAAAGGGTGTGACTAGGGTGGT
65 AGAACAAAAAGGGTGTGACTAGGGTGGT
* ** * *
998519 AATCGATATTA-TCAAACAAGAATGAAAAGGGTTTGACCAGGGTGGTAA-TTA-ATACGATCAAA
1 AATCGATA-CAGTCAAATGAGAATGAAAAGGGTTTGACTAGGGTGGTAACTGATATA-G-TCAAA
* * * * *
998581 TAAGAACGAAAAGGGTTTGACCAGGGTAGT
63 CAAGAACAAAAAGGGTGTGACTAGGGTGGT
* * * *
998611 AATCGAT-CTAGTCAAATGATAATAAAAAGGGTTTGACTAGGGTGATAACCGATATAGTCAAA
1 AATCGATAC-AGTCAAATGAGAATGAAAAGGGTTTGACTAGGGTGGTAACTGATATAGTCAAA
998673 GGAGAATGAA
Statistics
Matches: 189, Mismatches: 46, Indels: 22
0.74 0.18 0.09
Matches are distributed among these distances:
90 3 0.02
91 10 0.05
92 168 0.89
93 5 0.03
94 3 0.02
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.24
Consensus pattern (92 bp):
AATCGATACAGTCAAATGAGAATGAAAAGGGTTTGACTAGGGTGGTAACTGATATAGTCAAACAA
GAACAAAAAGGGTGTGACTAGGGTGGT
Found at i:999426 original size:83 final size:83
Alignment explanation
Indices: 999287--999440 Score: 245
Period size: 83 Copynumber: 1.9 Consensus size: 83
999277 TAGTCTCGAG
* * * * * *
999287 AAAACCAGGCTTTGTGATGCATCGATACCATCTAGTGGTTGAGGAGAAAGGATATGATTGGGAAT
1 AAAACCAAGCTTTGTGATACATCGATACCATCTAATGGTTGAAGAAAAAAGATATGATTGGGAAT
999352 ATGTGGCTGACCCCCACA
66 ATGTGGCTGACCCCCACA
*
999370 AAAACCAAGCTTTGTGATACATCGATACCATCTAATGTTTGAAGAAAAAAGATATGATTGGGAAT
1 AAAACCAAGCTTTGTGATACATCGATACCATCTAATGGTTGAAGAAAAAAGATATGATTGGGAAT
999435 ATGTGG
66 ATGTGG
999441 TTAAGATTTC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 64 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (83 bp):
AAAACCAAGCTTTGTGATACATCGATACCATCTAATGGTTGAAGAAAAAAGATATGATTGGGAAT
ATGTGGCTGACCCCCACA
Found at i:1003298 original size:52 final size:52
Alignment explanation
Indices: 1003154--1003282 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
1003144 CGAAATATGA
*
1003154 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGACACATCTGGGC
*
1003206 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGACACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGACACATCTGGGC
*
1003258 AAGTTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1003283 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGACACATCTGGGC
Found at i:1003309 original size:13 final size:13
Alignment explanation
Indices: 1003291--1003315 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1003281 CAAAGATCAG
1003291 TGTATCGATACAA
1 TGTATCGATACAA
1003304 TGTATCGATACA
1 TGTATCGATACA
1003316 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1003390 original size:15 final size:15
Alignment explanation
Indices: 1003370--1003402 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
1003360 CGATACATTG
1003370 TATCGATACAAAACT
1 TATCGATACAAAACT
*
1003385 TATCGATACAACACT
1 TATCGATACAAAACT
1003400 TAT
1 TAT
1003403 GTATCGATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.30
Consensus pattern (15 bp):
TATCGATACAAAACT
Found at i:1003420 original size:13 final size:13
Alignment explanation
Indices: 1003402--1003426 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1003392 ACAACACTTA
1003402 TGTATCGATACAT
1 TGTATCGATACAT
1003415 TGTATCGATACA
1 TGTATCGATACA
1003427 AATCGTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1009457 original size:13 final size:13
Alignment explanation
Indices: 1009439--1009477 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
1009429 ACATTTTTCT
1009439 TTGTATCGATACA
1 TTGTATCGATACA
1009452 TTGTATCGATACA
1 TTGTATCGATACA
1009465 TTGTATCGATACA
1 TTGTATCGATACA
1009478 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1009641 original size:20 final size:20
Alignment explanation
Indices: 1009598--1009643 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1009588 AAATCTTTTG
1009598 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1009619 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1009639 CAAAA
1 CAAAA
1009644 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1012040 original size:13 final size:13
Alignment explanation
Indices: 1012022--1012047 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1012012 TACAGCAAGT
1012022 ATGTATCGATACA
1 ATGTATCGATACA
1012035 ATGTATCGATACA
1 ATGTATCGATACA
1012048 CGAAAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1012045 original size:86 final size:86
Alignment explanation
Indices: 1011947--1012155 Score: 384
Period size: 86 Copynumber: 2.4 Consensus size: 86
1011937 ATACATGTTG
*
1011947 CAATGTATCGATACATAAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACACAAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1012012 TACAGCAAGTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
*
1012033 CAATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACACAAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1012098 TACAGCAAGTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
*
1012119 CAATGTATCGATACACAAAAAA-TTGTATCGATACATT
1 CAATGTATCGATACACAAAAAAGATGTATCGATACATT
1012156 GGCTTGTAAC
Statistics
Matches: 119, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
85 14 0.12
86 105 0.88
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (86 bp):
CAATGTATCGATACACAAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
TACAGCAAGTATGTATCGATA
Found at i:1012126 original size:13 final size:13
Alignment explanation
Indices: 1012108--1012133 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1012098 TACAGCAAGT
1012108 ATGTATCGATACA
1 ATGTATCGATACA
1012121 ATGTATCGATACA
1 ATGTATCGATACA
1012134 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1013549 original size:17 final size:16
Alignment explanation
Indices: 1013527--1013560 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
1013517 ATTTTTAGTG
*
1013527 TAATTTTTTCAAGTTTT
1 TAATTTATTCAA-TTTT
1013544 TAATTTATTCAATTTT
1 TAATTTATTCAATTTT
1013560 T
1 T
1013561 CTCATGGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (16 bp):
TAATTTATTCAATTTT
Found at i:1016411 original size:20 final size:20
Alignment explanation
Indices: 1016386--1016439 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
1016376 GTTAAAAGCA
1016386 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
1016406 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
1016426 ATGTATCGATACAA
1 ATGTATCGATACAA
1016440 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:1016503 original size:20 final size:19
Alignment explanation
Indices: 1016475--1016543 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
1016465 CAGTTTCATC
**
1016475 TATCGATACAATTGTCCATG
1 TATCGATACAA-TGAACATG
*
1016495 TATCAATACAATGAACATG
1 TATCGATACAATGAACATG
*
1016514 TATCGATACAAGGCATA-ATG
1 TATCGATACAATG-A-ACATG
1016534 TATCGATACA
1 TATCGATACA
1016544 TCTGAGTGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 17 0.40
20 24 0.57
21 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29
Consensus pattern (19 bp):
TATCGATACAATGAACATG
Found at i:1018890 original size:22 final size:21
Alignment explanation
Indices: 1018855--1018904 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
1018845 TTTGTTGATG
*
1018855 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
1018875 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
1018896 AATTTGAAG
1 ATTTTGAAG
1018905 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:1018901 original size:21 final size:22
Alignment explanation
Indices: 1018862--1018904 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
1018852 ATGATTTTGA
* *
1018862 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
1018884 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
1018905 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:1019031 original size:13 final size:13
Alignment explanation
Indices: 1019013--1019037 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1019003 TAGTAACCCT
1019013 TGTATCGATACAA
1 TGTATCGATACAA
1019026 TGTATCGATACA
1 TGTATCGATACA
1019038 TCTAGGTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1021392 original size:46 final size:45
Alignment explanation
Indices: 1021322--1021409 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 45
1021312 TATCACTGTT
* *
1021322 CACTATTCATAACTGTTCACGTATCGCTAT-TCATGTATCGATAAAC
1 CACTATTCATAACTATTCACGTATCGATATAT--TGTATCGATAAAC
* * *
1021368 CACTGTTCATCACTATTCATGTATCGATATATTGTATCGATA
1 CACTATTCATAACTATTCACGTATCGATATATTGTATCGATA
1021410 TAGTGTGAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
45 10 0.28
46 25 0.69
47 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.38
Consensus pattern (45 bp):
CACTATTCATAACTATTCACGTATCGATATATTGTATCGATAAAC
Found at i:1021405 original size:13 final size:13
Alignment explanation
Indices: 1021387--1021411 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1021377 TCACTATTCA
1021387 TGTATCGATATAT
1 TGTATCGATATAT
1021400 TGTATCGATATA
1 TGTATCGATATA
1021412 GTGTGAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
TGTATCGATATAT
Found at i:1031029 original size:156 final size:155
Alignment explanation
Indices: 1030566--1031104 Score: 491
Period size: 156 Copynumber: 3.5 Consensus size: 155
1030556 ATTTTTTTTG
* * * *
1030566 GAATCGAGTCCTAGGTTGTCAC-CGAGTCCGCTTTTACGTAGAAGGTGGGTATTTAGGAT--GAT
1 GAATCGAGTCCTAGGTTGTCACTAG-GTCCGCTTTTATGTCGAAGGTGGGTATTTAGGATAGGTT
* ** *
1030628 CATCCCATCTATAATCCTTTTTAAGTCTTTTAAGATTACTAGGATACTTTCATGTCAAAGGTATA
65 CATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTA-TTGGATACTTTCATGTCAAAGGTATA
* *
1030693 CCCATAGGGGCATTTTTGTAATTTTTCTA
129 -CCATAAGGGCATTTTTGTATTTTTTC-A
* * * ** * * ** *
1030722 GAACCGAGTCCTAAGTTGTCACTGGGTTTGCTTTTATGCCAAAGGTGATTATTTAGGATAGGTTT
1 GAATCGAGTCCTAGGTTGTCACTAGGTCCGCTTTTATGTCGAAGGTGGGTATTTAGGATAGGTTC
* * ** * * ** * *
1030787 ATCCCATCTATAATCTTTTTTAAGTCCTTAAAGGGTA-TCAAGCACTTTTACATCGAAGGAAT-C
66 ATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTATTGGA-TACTTTCATGTCAAAGGTATAC
* * * *
1030850 CCTCAGGGATATTTTTATAATTTTTTCA
130 CATAAGGG-CATTTTTGT-ATTTTTTCA
* * ** *
1030878 GAATCAAGTCCTAGGTTTTCACTAGGTCCATTTTTATGTCGAAGGTGGGTATTTAGGATAGGTTT
1 GAATCGAGTCCTAGGTTGTCACTAGGTCCGCTTTTATGTCGAAGGTGGGTATTTAGGATAGGTTC
* * * * *
1030943 ATCCCATCTATAATCCTTCTAAAGTCCTTTAGGGGTATTGGATACTTCCGTGTCAAAGGTATACC
66 ATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTATTGGATACTTTCATGTCAAAGGTATACC
* *
1031008 AATAAGGGCATTTTCGTATTTTTTTA
131 -ATAAGGGCATTTTTGTATTTTTTCA
* * *
1031034 AAATCGAGTCCTAGGTTGTCATCGAGAT--GCTTTTATG-CTGAAGGTGGGTATTTAGGATAGGT
1 GAATCGAGTCCTAGGTTGTCA-CTAGGTCCGCTTTTATGTC-GAAGGTGGGTATTTAGGATAGGT
1031096 TCATCCCAT
64 TCATCCCAT
1031105 TTACAATCAT
Statistics
Matches: 297, Mismatches: 75, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
154 1 0.00
155 44 0.15
156 177 0.60
157 36 0.12
158 39 0.13
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (155 bp):
GAATCGAGTCCTAGGTTGTCACTAGGTCCGCTTTTATGTCGAAGGTGGGTATTTAGGATAGGTTC
ATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTATTGGATACTTTCATGTCAAAGGTATACC
ATAAGGGCATTTTTGTATTTTTTCA
Found at i:1031184 original size:311 final size:311
Alignment explanation
Indices: 1030566--1031209 Score: 703
Period size: 311 Copynumber: 2.1 Consensus size: 311
1030556 ATTTTTTTTG
* *
1030566 GAATCGAGTCCTAGGTTGTCACCGAGTCCGCTTTTACGTAGAAGGTGGGTATTTAGGATGATCAT
1 GAATCGAGTCCTAGGTTGTCACAGAGTCCACTTTTACGTAGAAGGTGGGTATTTAGGATGATCAT
* * * * * *
1030631 CCCATCTATAATCCTTTTTAAGTCTTTTAAGATTACTAGGATACTTTCATGTCAAAGGTATACCC
66 CCCATCTATAATCCTTCTAAAGTCCTTTAAGAGTACTAGGATACTTCCATGTCAAAGGTATACCA
* * * * *
1030696 ATAGGGGCATTTTTGTAATTTTTCTAGAACCGAGTCCTAAGTTGTCACTGGGTTTGCTTTTATGC
131 ATAAGGGCATTTTCGTAATTTTTCTAAAACCGAGTCCTAAGTTGTCACTGAGTATGCTTTTATGC
* * * * *
1030761 CAAAGGTGATTATTTAGGATAGGTTTATCCCATCTATAATCTTTTTTAAGTCCTTAAAGGGTATC
196 CAAAGGTGAGTATTTAGGATAGGTTCATCCCATCTACAATCTATTTTAAGTCCTT-AAGGGTACC
* * * *
1030826 AAGCACTTTTACATCGAAGGAATCCCTCAGGGATATTTTTATAATTTT-TTCA
260 AAGCACTTCTACATCAAAAGAATCCCCCAGGGATATTTTTATAATTTTATT-A
* * * * * *
1030878 GAATCAAGTCCTAGGTTTTCACTAG-GTCCATTTTTATGTCGAAGGTGGGTATTTAGGATAGGTT
1 GAATCGAGTCCTAGGTTGTCAC-AGAGTCCACTTTTACGTAGAAGGTGGGTATTTAGGAT--GAT
* * * * *
1030942 TATCCCATCTATAATCCTTCTAAAGTCCTTTAGGGGTA-TTGGATACTTCCGTGTCAAAGGTATA
63 CATCCCATCTATAATCCTTCTAAAGTCCTTTAAGAGTACTAGGATACTTCCATGTCAAAGGTATA
* * *
1031006 CCAATAAGGGCATTTTCGT-ATTTTTTTAAAATCGAGTCCTAGGTTGTCA-TCGAG-ATGCTTTT
128 CCAATAAGGGCATTTTCGTAATTTTTCTAAAACCGAGTCCTAAGTTGTCACT-GAGTATGCTTTT
** * * *
1031068 ATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCATTTACAATC-ATTTTAGTGTCCATT-AGG
192 ATGCCAAAGGTGAGTATTTAGGATAGGTTCATCCCATCTACAATCTATTTTA-AGTCC-TTAAGG
* * * * * *
1031131 AGTACCAAGTACTTCTATATTAAAAGTA-CCCCCGAGGGGTATTTTTGTAATTTTATTA
255 -GTACCAAGCACTTCTACATCAAAAGAATCCCCC-AGGGATATTTTTATAATTTTATTA
*
1031189 AAATCGAGTCCTAGGTTGTCA
1 GAATCGAGTCCTAGGTTGTCA
1031210 TTCATATGCG
Statistics
Matches: 273, Mismatches: 50, Indels: 19
0.80 0.15 0.06
Matches are distributed among these distances:
310 12 0.04
311 106 0.39
312 82 0.30
313 40 0.15
314 33 0.12
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (311 bp):
GAATCGAGTCCTAGGTTGTCACAGAGTCCACTTTTACGTAGAAGGTGGGTATTTAGGATGATCAT
CCCATCTATAATCCTTCTAAAGTCCTTTAAGAGTACTAGGATACTTCCATGTCAAAGGTATACCA
ATAAGGGCATTTTCGTAATTTTTCTAAAACCGAGTCCTAAGTTGTCACTGAGTATGCTTTTATGC
CAAAGGTGAGTATTTAGGATAGGTTCATCCCATCTACAATCTATTTTAAGTCCTTAAGGGTACCA
AGCACTTCTACATCAAAAGAATCCCCCAGGGATATTTTTATAATTTTATTA
Found at i:1034926 original size:29 final size:29
Alignment explanation
Indices: 1034893--1034950 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
1034883 AATGAAGATA
1034893 GATTAATTTTAAAGCTTTTGAATTCTTTC
1 GATTAATTTTAAAGCTTTTGAATTCTTTC
1034922 GATTAATTTTAAAGCTTTTGAATTCTTTC
1 GATTAATTTTAAAGCTTTTGAATTCTTTC
1034951 ATGATGAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (29 bp):
GATTAATTTTAAAGCTTTTGAATTCTTTC
Found at i:1036572 original size:57 final size:56
Alignment explanation
Indices: 1036501--1036635 Score: 164
Period size: 56 Copynumber: 2.4 Consensus size: 56
1036491 TGAAAGTAGG
* * *
1036501 ACCCAAAATAAGAAAGCCTAAAAATAACTAGTAGAGATGGCTCCATTCAAAATTGAC
1 ACCCAAAATGAGAAAGCCTAAAAATAACTAGTA-AGATAGCTCCAGTCAAAATTGAC
* * * ** * *
1036558 ACCTAAAATGAGAAAGCCTAAGAGTGGCTAGTAAGATAGCTCTAGTCAAAATTGGC
1 ACCCAAAATGAGAAAGCCTAAAAATAACTAGTAAGATAGCTCCAGTCAAAATTGAC
1036614 ACCCAAAATGAGAAAGCC-AAAA
1 ACCCAAAATGAGAAAGCCTAAAA
1036636 GTAGTAAGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 3 0.05
56 36 0.55
57 27 0.41
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.18
Consensus pattern (56 bp):
ACCCAAAATGAGAAAGCCTAAAAATAACTAGTAAGATAGCTCCAGTCAAAATTGAC
Found at i:1036625 original size:56 final size:57
Alignment explanation
Indices: 1036449--1036738 Score: 223
Period size: 57 Copynumber: 5.1 Consensus size: 57
1036439 ATCAAACTTC
* * * * * * * *
1036449 AAATGTGAAAGCCTAAGAGTGGCTGGTAGGGATAGCTCTAATTGAAAGTAGG-ACCCA
1 AAATGAGAAAGCCTAAGAGTAGCTAGTAGAGATAGCTCT-AGTCAAAATTGGCACCCA
* * * * * * * * *
1036506 AAATAAGAAAGCCTAAAAATAACTAGTAGAGATGGCTCCATTCAAAATTGACACCTA
1 AAATGAGAAAGCCTAAGAGTAGCTAGTAGAGATAGCTCTAGTCAAAATTGGCACCCA
*
1036563 AAATGAGAAAGCCTAAGAGTGGCTAGTA-AGATAGCTCTAGTCAAAATTGGCACCCA
1 AAATGAGAAAGCCTAAGAGTAGCTAGTAGAGATAGCTCTAGTCAAAATTGGCACCCA
* * * *
1036619 AAATGAGAAAGCC-AAAAGTAG-TAAGTAGGGATAGTTCTAAT-AGAAATTGGCACCCA
1 AAATGAGAAAGCCTAAGAGTAGCT-AGTAGAGATAGCTCTAGTCA-AAATTGGCACCCA
* * * * * ** **
1036675 AAATGAAAAAGCCCAAGAATAGCTGGTAAAGATAGCT-TAAGTTGAAATTGGCATTCA
1 AAATGAGAAAGCCTAAGAGTAGCTAGTAGAGATAGCTCT-AGTCAAAATTGGCACCCA
1036732 AAATGAG
1 AAATGAG
1036739 GAAGAGAAAG
Statistics
Matches: 183, Mismatches: 42, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
54 1 0.01
55 11 0.06
56 80 0.44
57 90 0.49
58 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.21
Consensus pattern (57 bp):
AAATGAGAAAGCCTAAGAGTAGCTAGTAGAGATAGCTCTAGTCAAAATTGGCACCCA
Found at i:1036707 original size:113 final size:115
Alignment explanation
Indices: 1036549--1036825 Score: 287
Period size: 113 Copynumber: 2.5 Consensus size: 115
1036539 GGCTCCATTC
* * * * * *
1036549 AAAATTGACACCTAAAATGAGAAAGCCTAAGAGTGGCTAGT-AAGATAGCTCT-AGTCAAAATTG
1 AAAATTGGCACCCAAAATGAAAAAGCCCAAGAATAGCTAGTAAAGATAGCTCTAAGTCAAAATTG
* * *
1036612 GCACCCAAAATGAGAAAGCCAAA-AGTAGTAAGTAGGGATAGTTCTAATA-
66 GCACCCAAAATGAGAAAGACAAAGAGTAGTAAGTAAGGATAGCT-TAATAT
* * **
1036661 GAAATTGGCACCCAAAATGAAAAAGCCCAAGAATAGCTGGTAAAGATAGCT-TAAGTTGAAATTG
1 AAAATTGGCACCCAAAATGAAAAAGCCCAAGAATAGCTAGTAAAGATAGCTCTAAGTCAAAATTG
** * * **
1036725 GCATTCAAAATGAGGAAGAGAAAGAGTAGTTGGTAAGGATAGCTTAATAT
66 GCACCCAAAATGAGAAAGACAAAGAGTAGTAAGTAAGGATAGCTTAATAT
* * * * *
1036775 AAAATTAGCA-CCTAAATGAAAAAACTCAAGAATAGCTAGTAAGGATAGCTC
1 AAAATTGGCACCCAAAATGAAAAAGCCCAAGAATAGCTAGTAAAGATAGCTC
1036826 CCAAGAGTAG
Statistics
Matches: 134, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
112 34 0.25
113 76 0.57
114 24 0.18
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (115 bp):
AAAATTGGCACCCAAAATGAAAAAGCCCAAGAATAGCTAGTAAAGATAGCTCTAAGTCAAAATTG
GCACCCAAAATGAGAAAGACAAAGAGTAGTAAGTAAGGATAGCTTAATAT
Found at i:1036736 original size:57 final size:56
Alignment explanation
Indices: 1036550--1036824 Score: 170
Period size: 56 Copynumber: 4.9 Consensus size: 56
1036540 GCTCCATTCA
* * * * * * *
1036550 AAATTGACACCTAAAATGAGAAAGCCTAAGAGTGGCTAGTAA-GATAGCTCTAGTCA--
1 AAATTGGCACC-AAAATGAAAAAGCCCAAGAATAGCTGGTAAGGATAGCT-TAAT-ATG
* * * *
1036606 AAATTGGCACCCAAAATGAGAAAG-CCAA-AAGTAG-TAAGTAGGGATAGTTCTAATA-G
1 AAATTGGCA-CCAAAATGAAAAAGCCCAAGAA-TAGCT-GGTAAGGATAGCT-TAATATG
*
1036662 AAATTGGCACCCAAAATGAAAAAGCCCAAGAATAGCTGGTAAAGATAGCTTAAGT-TG
1 AAATTGGCA-CCAAAATGAAAAAGCCCAAGAATAGCTGGTAAGGATAGCTTAA-TATG
* ** *** * * *
1036719 AAATTGGCATTCAAAATGAGGAAGAGAAAGAGTAGTTGGTAAGGATAGCTTAATATA
1 AAATTGGCA-CCAAAATGAAAAAGCCCAAGAATAGCTGGTAAGGATAGCTTAATATG
* * * * *
1036776 AAATTAGCACCTAAATGAAAAAACTCAAGAATAGCTAGTAAGGATAGCT
1 AAATTGGCACCAAAATGAAAAAGCCCAAGAATAGCTGGTAAGGATAGCT
1036825 CCCAAGAGTA
Statistics
Matches: 173, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
54 2 0.01
55 10 0.06
56 86 0.50
57 72 0.42
58 3 0.02
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (56 bp):
AAATTGGCACCAAAATGAAAAAGCCCAAGAATAGCTGGTAAGGATAGCTTAATATG
Found at i:1036913 original size:56 final size:56
Alignment explanation
Indices: 1036825--1037119 Score: 337
Period size: 56 Copynumber: 5.3 Consensus size: 56
1036815 AAGGATAGCT
* * *
1036825 CCCAAGAGTAGCTAGTAAGGATAACTCGAGATGAAATTGGCACCAATATGAAAAAG
1 CCCAAGAGTAGCTAGTAAGGATAGCTCAAGATGAAATTGGCACCAATATGAGAAAG
* *
1036881 CCCAAAAGTAGCTAGTATGGATAGCTCAAGATGAAATTGGCACCAATATGAGAAAG
1 CCCAAGAGTAGCTAGTAAGGATAGCTCAAGATGAAATTGGCACCAATATGAGAAAG
* **
1036937 CCTAAGAGTAGCTAGTAAAGG-TAGCTTGAGATGAAATTGGCACCAATATGAGAAAG
1 CCCAAGAGTAGCTAGT-AAGGATAGCTCAAGATGAAATTGGCACCAATATGAGAAAG
* * * ** * * *
1036993 CCCAAGAGTAGCTAGTAAGGGTAGCTTAAGATGAAATTGGTATTAAAATAAGAAAA
1 CCCAAGAGTAGCTAGTAAGGATAGCTCAAGATGAAATTGGCACCAATATGAGAAAG
** * *
1037049 CCCAAGAGTAATTGGTAGGGATAGCTCCAA-ATGAAATT-GCACTCAA-ATGAGAAAG
1 CCCAAGAGTAGCTAGTAAGGATAGCT-CAAGATGAAATTGGCAC-CAATATGAGAAAG
* *
1037104 GCCAAAAGTAGCTAGT
1 CCCAAGAGTAGCTAGT
1037120 TGGGATACCT
Statistics
Matches: 201, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
55 24 0.12
56 172 0.86
57 5 0.02
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (56 bp):
CCCAAGAGTAGCTAGTAAGGATAGCTCAAGATGAAATTGGCACCAATATGAGAAAG
Found at i:1038516 original size:11 final size:11
Alignment explanation
Indices: 1038502--1038550 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
1038492 AAGGAAAAAG
1038502 AAAATAAGAGA
1 AAAATAAGAGA
*
1038513 AAAA-AGAAAGA
1 AAAATA-AGAGA
1038524 AAAATAAGAGA
1 AAAATAAGAGA
*
1038535 AAAATGAGAAGA
1 AAAATAAG-AGA
1038547 AAAA
1 AAAA
1038551 GATAAAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 1 0.03
11 23 0.72
12 8 0.25
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (11 bp):
AAAATAAGAGA
Found at i:1038526 original size:9 final size:8
Alignment explanation
Indices: 1038496--1038569 Score: 51
Period size: 9 Copynumber: 8.8 Consensus size: 8
1038486 AAGAGAAAGG
1038496 AAAAAGAA
1 AAAAAGAA
*
1038504 AATAAGAGA
1 AAAAAGA-A
1038513 AAAAAGAA
1 AAAAAGAA
*
1038521 AGAAA-AA
1 AAAAAGAA
* *
1038528 TAAGAGAA
1 AAAAAGAA
*
1038536 AAATGAGAA
1 AAA-AAGAA
1038545 GAAAAAGATA
1 -AAAAAGA-A
1038555 AAAAAGAA
1 AAAAAGAA
1038563 AAGAAAG
1 AA-AAAG
1038570 TTGTTAGAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
7 4 0.08
8 18 0.35
9 26 0.50
10 4 0.08
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (8 bp):
AAAAAGAA
Found at i:1038566 original size:20 final size:21
Alignment explanation
Indices: 1038497--1038568 Score: 83
Period size: 22 Copynumber: 3.4 Consensus size: 21
1038487 AGAGAAAGGA
1038497 AAAAGAAAATAAGAGAAAAAAG
1 AAAAG-AAATAAGAGAAAAAAG
* *
1038519 AAAGAAAAATAAGAGAAAAATG
1 AAA-AGAAATAAGAGAAAAAAG
* *
1038541 AGAAGAAA-AAGATAAAAAAG
1 AAAAGAAATAAGAGAAAAAAG
1038561 AAAAGAAA
1 AAAAGAAA
1038569 GTTGTTAGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 17 0.40
21 4 0.10
22 20 0.48
23 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAGAAATAAGAGAAAAAAG
Found at i:1039339 original size:58 final size:60
Alignment explanation
Indices: 1039213--1039457 Score: 182
Period size: 59 Copynumber: 4.2 Consensus size: 60
1039203 TGCAACTTCA
* * * *
1039213 ATGCATTTTAGGGTTATTTAAGTTATTTTTATGTAATCTAGGGACTATTTAGCAATTTTC
1 ATGCATTTTAAGGTCATTTAAGTTATTTTTATGTAATCCAAGGACTATTTAGCAATTTTC
** * * * *
1039273 ATATATTTTATGGTCATATAGGTTATTTTT-TGTAATCCAAGGACT-TTTAGCATTTTTC
1 ATGCATTTTAAGGTCATTTAAGTTATTTTTATGTAATCCAAGGACTATTTAGCAATTTTC
* ** ** *
1039331 ATGCATTTTAAGGCCATTTAAGTTA-TTTTACATAATTTAGAGTCACT-TTT-GCAATTTAT-
1 ATGCATTTTAAGGTCATTTAAGTTATTTTTATGTAATCCA-AG-GACTATTTAGCAATTT-TC
*** * * * * *
1039390 ATTTGTTTTAGGGTCATTTAGGTTA-TTCTATGTAATTC-AGAGACTATTTAGCAAATTTC
1 ATGCATTTTAAGGTCATTTAAGTTATTTTTATGTAATCCAAG-GACTATTTAGCAATTTTC
1039449 ATGCATTTT
1 ATGCATTTT
1039458 GGGCCATTTA
Statistics
Matches: 141, Mismatches: 37, Indels: 15
0.73 0.19 0.08
Matches are distributed among these distances:
57 9 0.06
58 40 0.28
59 61 0.43
60 31 0.22
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (60 bp):
ATGCATTTTAAGGTCATTTAAGTTATTTTTATGTAATCCAAGGACTATTTAGCAATTTTC
Found at i:1039472 original size:58 final size:58
Alignment explanation
Indices: 1039213--1039472 Score: 197
Period size: 58 Copynumber: 4.4 Consensus size: 58
1039203 TGCAACTTCA
* * * *
1039213 ATGCATTTTAGGGTTATTTAAGTTATTTTTATGTAA-TCTAGGGACTATTTAGCAATTTTC
1 ATGCATTTTAGGGTCATTTAGGTTA-TTTTATGTAATTC-AGAGACT-TTTAGCAAATTTC
** * * * * **
1039273 ATATATTTTATGGTCATATAGGTTATTTTTTGTAATCCA-AGGACTTTTAGCATTTTTC
1 ATGCATTTTAGGGTCATTTAGGTTATTTTATGTAATTCAGA-GACTTTTAGCAAATTTC
* * * ** * *
1039331 ATGCATTTTAAGGCCATTTAAGTTATTTTACATAATTTAGAGTCACTTTT-GC-AATTTAT
1 ATGCATTTTAGGGTCATTTAGGTTATTTTATGTAATTCAGAG--ACTTTTAGCAAATTT-C
*** *
1039390 ATTTGTTTTAGGGTCATTTAGGTTATTCTATGTAATTCAGAGACTATTTAGCAAATTTC
1 ATGCATTTTAGGGTCATTTAGGTTATTTTATGTAATTCAGAGACT-TTTAGCAAATTTC
*
1039449 ATGCATTTT-GGGCCATTTAGGTTA
1 ATGCATTTTAGGGTCATTTAGGTTA
1039473 AATTATATAA
Statistics
Matches: 152, Mismatches: 39, Indels: 20
0.72 0.18 0.09
Matches are distributed among these distances:
57 3 0.02
58 61 0.40
59 57 0.38
60 31 0.20
ACGTcount: A:0.27, C:0.10, G:0.16, T:0.47
Consensus pattern (58 bp):
ATGCATTTTAGGGTCATTTAGGTTATTTTATGTAATTCAGAGACTTTTAGCAAATTTC
Found at i:1043528 original size:29 final size:29
Alignment explanation
Indices: 1043495--1043556 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
1043485 TAAGGTAATT
* * *
1043495 TAGGTAATAGTATCTTAAAATAGAATCTC
1 TAGGTAATAGTAACTTAAAACAGAATCTA
1043524 TAGGTAATAGTAACTTAAAACAGAATCTA
1 TAGGTAATAGTAACTTAAAACAGAATCTA
1043553 TAGG
1 TAGG
1043557 GTCACGTGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.31
Consensus pattern (29 bp):
TAGGTAATAGTAACTTAAAACAGAATCTA
Found at i:1065879 original size:80 final size:79
Alignment explanation
Indices: 1065777--1065979 Score: 221
Period size: 79 Copynumber: 2.6 Consensus size: 79
1065767 AATAACAGGG
* * * * *
1065777 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTA
*
1065840 GAAAAAAAAAATCGGGA
64 G-AAAAAAAAACCGGGA
* * *
1065857 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
* * * *
1065922 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* * *
1065936 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
1065980 GAAATAACGA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 56 0.54
80 48 0.46
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAAACCGGGA
Found at i:1065971 original size:28 final size:28
Alignment explanation
Indices: 1065931--1066002 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
1065921 GGAATAAAGC
** *
1065931 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
1065959 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
1065987 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
1066003 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:1066060 original size:52 final size:52
Alignment explanation
Indices: 1065991--1066327 Score: 203
Period size: 52 Copynumber: 6.4 Consensus size: 52
1065981 AAATAACGAG
*
1065991 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** * *
1066043 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * *
1066096 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
* **** * * *
1066147 GTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
*
1066202 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGA
* * * * *
1066256 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
*
1066307 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
1066328 GAGAATTGAT
Statistics
Matches: 216, Mismatches: 42, Indels: 54
0.69 0.13 0.17
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 2 0.01
51 38 0.18
52 79 0.37
53 33 0.15
54 28 0.13
55 18 0.08
56 2 0.01
57 4 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:1066187 original size:28 final size:27
Alignment explanation
Indices: 1066147--1066217 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
1066137 TAAAACCGGA
**
1066147 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCGAGG-AATAACGGG
* *
1066175 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCGAGGAATAACGGG
1066202 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
1066218 TTGTGAAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (27 bp):
GTTGGAGTATCCCCGAGGAATAACGGG
Found at i:1066230 original size:107 final size:106
Alignment explanation
Indices: 1065877--1066269 Score: 343
Period size: 107 Copynumber: 3.7 Consensus size: 106
1065867 CCTTCGAAAA
* * * * * * * *
1065877 TAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTTGGAATAAAACCGGAGTTGGAG
* *
1065942 TATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAA
66 TATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-AT
* * * *
1065984 TAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGA
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTTGG-AATAAAACCGGAGTTGGA
* * ** * ** **
1066049 GTAT-CCC-C-G-ATTAAAGGAAAATTGGCGT-T--TTGAAAAT
65 GTATCCCCTCGGAAATAACGG--GGTTGGAGTATCCCCGATGAT
* * * * *
1066086 AAAACCAGGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG-ATAAAACCGGAGTT
1 -TAA-CGGGGTTGGAGTATCCCCGATTGT-GAAAAATTAGTATTTTTG-GAATAAAACCGGAGTT
1066150 GGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
62 GGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
* * * *
1066195 TAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 TAACGGGGTTGGAGTATCCCCGATTGTGAA-AAATTAGT-ATTTTTGG-AATAAAACCGGAGTTG
1066260 GAGTATCCCC
63 GAGTATCCCC
1066270 GATTATAGAA
Statistics
Matches: 220, Mismatches: 48, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
102 1 0.00
103 4 0.02
104 46 0.21
105 20 0.09
106 18 0.08
107 72 0.33
108 32 0.15
109 27 0.12
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (106 bp):
TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTTGGAATAAAACCGGAGTTGGAG
TATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
Found at i:1066283 original size:212 final size:212
Alignment explanation
Indices: 1065924--1066329 Score: 647
Period size: 212 Copynumber: 1.9 Consensus size: 212
1065914 TATTTTGGGA
* * *
1065924 ATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACG
1 ATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
* *
1065989 AGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATC
66 AGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATC
* *
1066054 CCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA-TTGGAGTATCCCCGATTGTGGA
131 CCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACC-GGAGTTGGAATATCCCCGATTGTGGA
1066118 AAAATTAGTGTTTTAGCG
195 AAAATTAGTGTTTTAGCG
*
1066136 ATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACG
1 ATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
* *
1066200 GGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTA
66 AGGTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTAGAGTA
* * *
1066265 TCCCCGATTATA-GAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGG
129 TCCCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGG
1066329 A
194 A
1066330 GAATTGATAA
Statistics
Matches: 178, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
211 32 0.18
212 107 0.60
213 39 0.22
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (212 bp):
ATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
AGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATC
CCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAA
AAATTAGTGTTTTAGCG
Found at i:1066302 original size:51 final size:53
Alignment explanation
Indices: 1066206--1066324 Score: 154
Period size: 51 Copynumber: 2.3 Consensus size: 53
1066196 AACGGGGTTG
* * *
1066206 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
1066260 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
*
1066311 GAATATCCCCGATT
1 GAGTATCCCCGATT
1066325 GTGGAGAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
51 34 0.58
52 2 0.03
53 8 0.14
54 15 0.25
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.32
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:1068708 original size:13 final size:13
Alignment explanation
Indices: 1068690--1068715 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1068680 ACAAAGATCC
1068690 ATGTATCGATACA
1 ATGTATCGATACA
1068703 ATGTATCGATACA
1 ATGTATCGATACA
1068716 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1068711 original size:33 final size:33
Alignment explanation
Indices: 1068669--1068735 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1068659 AAAATTTCCA
***
1068669 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
1068702 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
1068735 A
1 A
1068736 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:1068779 original size:19 final size:18
Alignment explanation
Indices: 1068755--1068822 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1068745 CAGTAGCTAA
1068755 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1068774 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1068789 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1068806 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1068823 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1068795 original size:13 final size:13
Alignment explanation
Indices: 1068777--1068801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1068767 ACAATACTTA
1068777 TGTATCGATACAT
1 TGTATCGATACAT
1068790 TGTATCGATACA
1 TGTATCGATACA
1068802 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1068799 original size:32 final size:32
Alignment explanation
Indices: 1068758--1068820 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1068748 TAGCTAATTA
*
1068758 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1068790 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1068821 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1069868 original size:55 final size:55
Alignment explanation
Indices: 1069646--1070218 Score: 642
Period size: 55 Copynumber: 10.2 Consensus size: 55
1069636 GTAAAAAGTG
* * * *
1069646 CACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTC-TTGAGGACT-GAAAGGTGC
1 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATGC
* * *
1069700 CACCAACTTGTGTGGGC-TTAAGA-GTGTCCTGCTCTTTGGGGACT-GAAAGGTGC
1 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATGC
** *
1069753 CACCAACTTGTGTGGGCTTTAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGC
1 CACCAACTTGTGTGGGCTTTAAAAG-----GTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
1069813 CACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
1 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
* *
1069868 CACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTC-TTGAGGACT-GAAAGGTGC
1 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATGC
** *
1069922 CACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGC
1 CACCAACTTGTGTGGGCTTT-AAAAG-----GTGTCCTGCTCTTTGAGGACTGGAAAATGC
* *
1069983 CACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGC
1 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
* * *
1070038 CACCAACTTGTGTGGGCTTTGAAAGATGTCCTGCTCTTTGAGGACT-GAAAGGTGC
1 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATGC
** * *
1070093 CACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATAC
1 CACCAACTTGTGTGGGCTTT-AAAAG-----GTGTCCTGCTCTTTGAGGACTGGAAAATGC
* * *
1070154 CA-CTACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGC
1 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
1070208 CACCAACTTGT
1 CACCAACTTGT
1070219 CTGCTCTTTG
Statistics
Matches: 443, Mismatches: 49, Indels: 53
0.81 0.09 0.10
Matches are distributed among these distances:
52 10 0.02
53 42 0.09
54 84 0.19
55 162 0.37
56 4 0.01
59 5 0.01
60 74 0.17
61 56 0.13
62 6 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
Found at i:1069963 original size:170 final size:171
Alignment explanation
Indices: 1069619--1070218 Score: 979
Period size: 170 Copynumber: 3.5 Consensus size: 171
1069609 AATAAAGTGT
* * * * *
1069619 ATCCTTCTCATTGAGGAGT-AAAAAGTG-CACCAA-CTCGTGTGGGCTTTGAAAGGCGTCCTGCT
1 ATCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACCT-GTGTGGGCTTTAAAAGGTGTCCTGCT
* *
1069681 C-TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGC-TT--AAGAGTGTCCTGCTCTTTGGGG
64 CTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAG-GTGTCCTGCTCTTTGAGG
1069741 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGC
127 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
1069785 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1069850 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTC-TTGAGGACTG
66 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
1069914 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
131 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
1069955 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* *
1070020 TTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGATGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
1070085 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
131 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* *
1070126 ATCCTGCTCTTTGAGGACTGAAAAATACCA-CTACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
*
1070190 TTGAGGATTGGAAAATGCCACCAACTTGT
66 TTGAGGACTGGAAAATGCCACCAACTTGT
1070219 CTGCTCTTTG
Statistics
Matches: 413, Mismatches: 11, Indels: 16
0.94 0.03 0.04
Matches are distributed among these distances:
166 18 0.04
167 36 0.09
168 31 0.08
169 43 0.10
170 202 0.49
171 83 0.20
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (171 bp):
ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
Found at i:1070229 original size:115 final size:111
Alignment explanation
Indices: 1069646--1070218 Score: 671
Period size: 115 Copynumber: 5.1 Consensus size: 111
1069636 GTAAAAAGTG
* * **
1069646 CACCAACTCGTGTGGGCTTTG-AAAGGCGTCCTGCTC-TTGAGGACTGAAAGGTGCCACCAACTT
1 CACCAACTTGTGTGGGCTTTGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTT
* * *
1069709 GTGTGGGC-TTAAGA-GTGTCCTGCTCTTTGGGGACT-GAAAGGTGC
66 GTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATGC
*
1069753 CACCAACTTGTGTGGGCTTTAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCA
1 CACCAACTTGTGTGGGCTTT----GAAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCA
*
1069818 ACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
62 ACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
** **
1069868 CACCAACTTGTGTGGGCTTTG-AAAGGTGTCCTGCTC-TTGAGGACTGAAAGGTGCCACCAACTT
1 CACCAACTTGTGTGGGCTTTGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTT
** *
1069931 GTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGC
66 GTGTGGGCTTT-AAAAG-----GTGTCCTGCTCTTTGAGGACTGGAAAATGC
* ** * *
1069983 CACCAACCTGTGTGGGCTTT-AAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTT
1 CACCAACTTGTGTGGGCTTTGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTT
* * *
1070047 GTGTGGGCTTTGAAAGATGTCCTGCTCTTTGAGGACT-GAAAGGTGC
66 GTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATGC
*
1070093 CACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATACCA-C
1 CACCAACTTGTGTGGGCTTTGAAAAG-----GCATCCTGCTCTTTGAGGACTGAAAAATGCCACC
* * *
1070157 TACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGC
61 AACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
1070208 CACCAACTTGT
1 CACCAACTTGT
1070219 CTGCTCTTTG
Statistics
Matches: 400, Mismatches: 41, Indels: 42
0.83 0.08 0.09
Matches are distributed among these distances:
107 19 0.05
109 38 0.09
110 57 0.14
111 7 0.02
112 13 0.03
113 32 0.08
114 5 0.01
115 160 0.40
116 69 0.17
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (111 bp):
CACCAACTTGTGTGGGCTTTGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTT
GTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
Found at i:1071306 original size:1 final size:1
Alignment explanation
Indices: 1071302--1071353 Score: 59
Period size: 1 Copynumber: 52.0 Consensus size: 1
1071292 CTTTTCTCTC
* * * **
1071302 TTTTTCTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1071354 GAAGAGAAGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (1 bp):
T
Found at i:1071320 original size:15 final size:15
Alignment explanation
Indices: 1071302--1071354 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
1071292 CTTTTCTCTC
*
1071302 TTTTTCTTTGTTTTG
1 TTTTTTTTTGTTTTG
1071317 TTTTTTTTT-TTTT-
1 TTTTTTTTTGTTTTG
1071330 TTTTTTTTT-TTTTG
1 TTTTTTTTTGTTTTG
1071344 CTTTTTTTTTG
1 -TTTTTTTTTG
1071355 AAGAGAAGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
13 13 0.38
14 4 0.12
15 17 0.50
ACGTcount: A:0.00, C:0.04, G:0.08, T:0.89
Consensus pattern (15 bp):
TTTTTTTTTGTTTTG
Found at i:1083977 original size:28 final size:28
Alignment explanation
Indices: 1083921--1083997 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
1083911 GGAATAAAGC
*** *
1083921 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
1083949 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* * *
1083977 CGAGGTTGGAGCATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
1083998 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:1084050 original size:52 final size:52
Alignment explanation
Indices: 1083981--1084318 Score: 151
Period size: 52 Copynumber: 6.4 Consensus size: 52
1083971 AAATAACGAG
* *
1083981 GTTGGAGCATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** ** *
1084033 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTAAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * *
1084086 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
* * **** * * *
1084137 GTTGGAGTATCCCC--TCG-AAAATAACGGGGTTAGAGTA-TCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TT-G-GTATTTTTGGA-AATAAAATCGGA
*
1084192 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATT-G-GTATTTTTGGAAATAAAATCGGA
* * * * *
1084247 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
* **
1084298 GTTGGAATATCCTTGATTGTG
1 GTTGGAGTATCCCCGATTGTG
1084319 GAGAATTGAT
Statistics
Matches: 209, Mismatches: 51, Indels: 52
0.67 0.16 0.17
Matches are distributed among these distances:
48 3 0.01
49 2 0.01
50 2 0.01
51 36 0.17
52 77 0.37
53 22 0.11
54 14 0.07
55 40 0.19
56 4 0.02
57 4 0.02
58 4 0.02
59 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:1084173 original size:28 final size:28
Alignment explanation
Indices: 1084124--1084205 Score: 80
Period size: 27 Copynumber: 3.0 Consensus size: 28
1084114 AGTGTTTTAG
* * *
1084124 CGATAAA-ACCGGAGTTGGAGTATCCCC
1 CGATAAATAACGGGGTTAGAGTATCCCC
1084151 TCGA-AAATAACGGGGTTAGAGTAT-CCC
1 -CGATAAATAACGGGGTTAGAGTATCCCC
* * *
1084178 CGATGATTAACGGGGTTGGAGTATCCCC
1 CGATAAATAACGGGGTTAGAGTATCCCC
1084206 GATTGTGAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 23 0.51
28 19 0.42
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (28 bp):
CGATAAATAACGGGGTTAGAGTATCCCC
Found at i:1084255 original size:55 final size:51
Alignment explanation
Indices: 1084196--1084323 Score: 132
Period size: 51 Copynumber: 2.4 Consensus size: 51
1084186 AACGGGGTTG
* *
1084196 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGTG-AGAAATTAGTG---TTTTGAAAATAAAATCGGAGTTA
* *
1084251 GAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTGTGAG-AAATTAGTGTTTTGAAAATAAAATCGGAGTTA
* **
1084302 GAATATCCTTGATTGTGGAGAA
1 GAGTATCCCCGATTGT-GAGAA
1084324 TTGATAAACT
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
51 33 0.53
52 2 0.03
53 4 0.06
54 8 0.13
55 15 0.24
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAGAAATTAGTGTTTTGAAAATAAAATCGGAGTTA
Found at i:1086704 original size:13 final size:13
Alignment explanation
Indices: 1086686--1086711 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1086676 ACAAAGATCT
1086686 ATGTATCGATACA
1 ATGTATCGATACA
1086699 ATGTATCGATACA
1 ATGTATCGATACA
1086712 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1086707 original size:33 final size:33
Alignment explanation
Indices: 1086665--1086731 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1086655 AAAATTTCCA
***
1086665 AATGTATCGATACAAAGATCTATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
1086698 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
1086731 A
1 A
1086732 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:1086775 original size:19 final size:18
Alignment explanation
Indices: 1086751--1086818 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1086741 CAGTAGCTAA
1086751 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1086770 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1086785 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1086802 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1086819 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1086791 original size:13 final size:13
Alignment explanation
Indices: 1086773--1086797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1086763 ACAATACTTA
1086773 TGTATCGATACAT
1 TGTATCGATACAT
1086786 TGTATCGATACA
1 TGTATCGATACA
1086798 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1086795 original size:32 final size:32
Alignment explanation
Indices: 1086754--1086816 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1086744 TAGCTAATTA
*
1086754 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1086786 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1086817 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1093603 original size:13 final size:13
Alignment explanation
Indices: 1093585--1093682 Score: 142
Period size: 13 Copynumber: 7.1 Consensus size: 13
1093575 AGTAGCTTAA
1093585 ATTGTATCGATAC
1 ATTGTATCGATAC
1093598 ATTGTATCGATAC
1 ATTGTATCGATAC
1093611 ATTGTATCGATAC
1 ATTGTATCGATAC
1093624 ATTGTATCGATAC
1 ATTGTATCGATAC
1093637 ATTGTATCGATACAAC
1 ATTGTATCGAT---AC
1093653 ACTTATGTATCGATAC
1 A--T-TGTATCGATAC
1093669 ATTGTATCGATAC
1 ATTGTATCGATAC
1093682 A
1 A
1093683 ACACTTTATG
Statistics
Matches: 79, Mismatches: 0, Indels: 12
0.87 0.00 0.13
Matches are distributed among these distances:
13 62 0.78
14 1 0.01
16 6 0.08
18 1 0.01
19 9 0.11
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:1093639 original size:39 final size:42
Alignment explanation
Indices: 1093585--1093682 Score: 148
Period size: 45 Copynumber: 2.3 Consensus size: 42
1093575 AGTAGCTTAA
1093585 ATTGTATCGATACATTGTATCGAT-ACA-T-TGTATCGATAC
1 ATTGTATCGATACATTGTATCGATAACACTATGTATCGATAC
1093624 ATTGTATCGATACATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACATTGTATCGAT--AACAC-TATGTATCGATAC
1093669 ATTGTATCGATACA
1 ATTGTATCGATACA
1093683 ACACTTTATG
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
39 24 0.45
42 3 0.06
44 1 0.02
45 25 0.47
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (42 bp):
ATTGTATCGATACATTGTATCGATAACACTATGTATCGATAC
Found at i:1093697 original size:33 final size:32
Alignment explanation
Indices: 1093600--1093702 Score: 155
Period size: 32 Copynumber: 3.4 Consensus size: 32
1093590 ATCGATACAT
1093600 TGTATCGATACATTGTATCGAT---ACA--T-
1 TGTATCGATACATTGTATCGATACAACACTTA
1093626 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
1093658 TGTATCGATACATTGTATCGATACAACACTTTA
1 TGTATCGATACATTGTATCGATACAACAC-TTA
1093691 TGTATCGATACA
1 TGTATCGATACA
1093703 AATCGTTGAA
Statistics
Matches: 70, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
26 22 0.31
29 3 0.04
31 1 0.01
32 29 0.41
33 15 0.21
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:1094593 original size:58 final size:54
Alignment explanation
Indices: 1094538--1095235 Score: 338
Period size: 43 Copynumber: 14.7 Consensus size: 54
1094528 TGTTAAAGAT
* *
1094538 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAA
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-TAAA
* *
1094593 G-A--CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG-ACA
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
*
1094643 -AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--GT---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* *
1094691 ------GCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATG---A
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGATGTAAA
* *
1094737 G--GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--GT---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* *
1094784 ------GCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATG---A
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGATGTAAA
* *
1094830 G--GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TG----
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* * *
1094872 G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--T---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* * * *
1094920 GATGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAG--GT---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* * *
1094969 ------GCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA--T---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* *
1095012 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-------T-T---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* * * *
1095055 GAAGGTGCCAATGTGCTGACTCAAGGCCAGCTACATTGGACTTAAAGA--T---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* * *
1095104 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG--GT---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* *
1095153 ------GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--T---
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
* *
1095196 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGA
1095236 GTTGAAGGTG
Statistics
Matches: 548, Mismatches: 41, Indels: 114
0.78 0.06 0.16
Matches are distributed among these distances:
42 1 0.00
43 222 0.41
44 9 0.02
46 2 0.00
47 1 0.00
48 1 0.00
49 156 0.28
50 70 0.13
52 84 0.15
54 1 0.00
55 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (54 bp):
GAAGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTAAA
Found at i:1094703 original size:43 final size:43
Alignment explanation
Indices: 1094642--1095287 Score: 680
Period size: 43 Copynumber: 14.1 Consensus size: 43
1094632 TAAAGATGAC
*
1094642 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
1094685 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1094728 AAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
1094778 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1094821 AAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * *
1094871 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
1094914 AAAGATGATGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT
1 --A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
1094963 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1095006 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
1095055 GAAGGTGCCAATGTGCTGACTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
1095098 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
1095147 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
1095190 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAGTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
1095239 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1095282 AGAAGG
1 A-AAGG
1095288 GTTGCCACCG
Statistics
Matches: 514, Mismatches: 50, Indels: 77
0.80 0.08 0.12
Matches are distributed among these distances:
43 266 0.52
44 7 0.01
45 1 0.00
46 4 0.01
47 6 0.01
48 1 0.00
49 155 0.30
50 74 0.14
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:1094969 original size:92 final size:92
Alignment explanation
Indices: 1094596--1095282 Score: 1149
Period size: 92 Copynumber: 7.4 Consensus size: 92
1094586 TGATAAAGAC
* * * *
1094596 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGA
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATATGCTGA
1094661 TTCAAGGCCAGCGATATTGGACTTAAAGGT
63 TTCAAGGCCAGCGATATTGGACTTAAAGGT
* * *
1094691 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGCTGATT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGAAGGTGCCAATATGCTGATT
1094756 CAAGGCCAGCGATATTGGACTTAAAGGT
65 CAAGGCCAGCGATATTGGACTTAAAGGT
* * *
1094784 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGCTGATT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGAAGGTGCCAATATGCTGATT
**
1094849 CAAGGCCAGCGATATTGGACTTGGAGGT
65 CAAGGCCAGCGATATTGGACTTAAAGGT
*
1094877 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
*
1094942 AAGGCTAGCGATATTGGACTTAAAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
*
1094969 GCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
*
1095034 AAGGCCAGCGATATTGGACTTGAAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
*
1095061 GCCAATGTGCTGACTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
*
1095126 AAGGCCAGCTATATTGGACTTAAAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
1095153 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
* *
1095218 AAGGCCAGCGATATTGGAGTTGAAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
1095245 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1095283 GAAGGGTTGC
Statistics
Matches: 566, Mismatches: 25, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
92 353 0.62
93 172 0.30
95 34 0.06
96 7 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (92 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAAAGGT
Found at i:1095361 original size:32 final size:32
Alignment explanation
Indices: 1095280--1095541 Score: 404
Period size: 32 Copynumber: 8.2 Consensus size: 32
1095270 TACATTGGAC
*
1095280 TTAGA-AGGGTTGCCACCGACTTCTGTGGGCT
1 TTAGAGAGGGTTGCCACCGACTTGTGTGGGCT
*
1095311 TTAGAAGAAGGTTGCCACCGACTTGTGTGGGCT
1 TTAG-AGAGGGTTGCCACCGACTTGTGTGGGCT
1095344 TTAGAGAGGGTTGCCACCGACTTGTGTGGGCT
1 TTAGAGAGGGTTGCCACCGACTTGTGTGGGCT
1095376 TTAGAGAGGGTTGCCACCGACTTGTGTGGGCT
1 TTAGAGAGGGTTGCCACCGACTTGTGTGGGCT
1095408 TT-GAGAAGGGTTGCCACCGACTTGTGTGGGCT
1 TTAGAG-AGGGTTGCCACCGACTTGTGTGGGCT
* *
1095440 TTAGAAAGGGTTGCCACCAACTTGTGTGGGCT
1 TTAGAGAGGGTTGCCACCGACTTGTGTGGGCT
*
1095472 TTAGA-AGGGATTGCCACCAACTTGTGTGGGCT
1 TTAGAGAGGG-TTGCCACCGACTTGTGTGGGCT
* *
1095504 TTAGAAAAAGGTTGCCACCGACTTGTGTGGGCT
1 TTAG-AGAGGGTTGCCACCGACTTGTGTGGGCT
1095537 TTAGA
1 TTAGA
1095542 AAAAGGTTGA
Statistics
Matches: 217, Mismatches: 7, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
31 11 0.05
32 147 0.68
33 56 0.26
34 3 0.01
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (32 bp):
TTAGAGAGGGTTGCCACCGACTTGTGTGGGCT
Found at i:1095594 original size:33 final size:33
Alignment explanation
Indices: 1095551--1096073 Score: 418
Period size: 34 Copynumber: 15.8 Consensus size: 33
1095541 AAAAAGGTTG
* *
1095551 AAAGATGCCACGAAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
1095584 TAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAG
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAA-GGAA
* * **
1095619 AAAGAGTGCCACGTAGTTGTGGGCTTTGAA--AA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
1095651 GAAGGTGCCACGAAGTTGTGGACTTTGAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* * * *
1095685 CAAGGTGCCACGGGGTCGTGGACTTAAAAAG-A
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
1095717 AAAGGTGCCACGGAGTGGTGGGCTTTGAAAA-GAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGGAA
* * *
1095751 AAAGGTGCCACGGAATTGTGGGCTTAAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTT-AAAAGGAA
*
1095785 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
1095818 CAAGATGCCACGGGGTCGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * **
1095851 CAAAGAGTGCCACAGAGTTGTGGGCTTTGAA--AA
1 -AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
1095884 GAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
1095917 TAAGGTGCCACGGGGTCGTGGACTTAAACAGAACA
1 AAAGGTGCCACGGAGTTGTGGACTTAAA-AGGA-A
* * *
1095952 AAAAGTGCCACGAAGTTGTGGACTTAGAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* **
1095985 AAAGAGTGCCACGGAGTTGTGGGCTTTGAA-G-A
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* * **
1096017 AAAGGATGCCACTGAGTCGTGGACTTTGAA-GAA
1 AAAGG-TGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
1096050 AAA-ATGCCACTGAGTCGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
1096074 TGAGACAAAA
Statistics
Matches: 405, Mismatches: 66, Indels: 40
0.79 0.13 0.08
Matches are distributed among these distances:
31 58 0.14
32 58 0.14
33 110 0.27
34 111 0.27
35 51 0.13
36 17 0.04
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:1095671 original size:100 final size:98
Alignment explanation
Indices: 1095550--1096046 Score: 402
Period size: 100 Copynumber: 5.0 Consensus size: 98
1095540 GAAAAAGGTT
* * *
1095550 GAAAGATGCCACGAAGTTGTGGACTTAAAAGGAATAAGGTGCCACGAAGTTGTGGACTTTAAAAG
1 GAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGAC-TTAAAAG
* *
1095615 GGAGAAAGAGTGCCACGTAGTTGTGGGCTTTGAAAA
65 GGA-AAAG-GTGCCACGGAGTGGTGGGCTTTGAAAA
* * * *
1095651 G-AAGGTGCCACGAAGTTGTGGACTTTGAAAGGAACAAGGTGCCACGGGGTCGTGGACTTAAAA-
1 GAAAGGTGCCACGAAGTTGTGGAC-TTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
*
1095714 AGAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAA
65 GGAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAA
* * *
1095748 GAAAAAGGTGCCACGGAA-TTGTGGGCTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAA
1 G--AAAGGTGCCAC-GAAGTTGTGGACTT-AAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTAA
* * * * **
1095812 AA-GGAACAAGATGCCACGGGGTCGTGGACTTAAAAGGAA
62 AAGGGAA-AAGGTGCCACGGAGTGGTGGGCTTTGAA--AA
* * ** * *
1095851 CAAAGAGTGCCAC-AGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACGGAGTCGTGGACTTAAAA
1 GAAAG-GTGCCACGA-AGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTAAAA
* * * **
1095913 -GGAATAAGGTGCCACGGGGTCGTGGACTTAAACAGAA
64 GGGAA-AAGGTGCCACGGAGTGGTGGGCTTTGA-A-AA
* * * * **
1095950 CAAAAAGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
1 -GAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAG-GTGCCACGGAGTTGTGGACTTAAAA
* * *
1096015 --GAAAAGGATGCCACTGAGTCGTGGACTTTGAA
64 GGGAAAAGG-TGCCACGGAGTGGTGGGCTTTGAA
1096047 GAAAAAATGC
Statistics
Matches: 333, Mismatches: 44, Indels: 39
0.80 0.11 0.09
Matches are distributed among these distances:
97 26 0.08
98 4 0.01
99 86 0.26
100 89 0.27
101 88 0.26
102 38 0.11
103 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (98 bp):
GAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGG
GAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAA
Found at i:1095743 original size:66 final size:66
Alignment explanation
Indices: 1095556--1096042 Score: 424
Period size: 66 Copynumber: 7.3 Consensus size: 66
1095546 GGTTGAAAGA
* * * * *
1095556 TGCCACGAAGTTGTGGACTTAAAAGGAATAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAGA-
1 TGCCACGGAGTCGTGGACTTAAAAGGAA-AAGGTGCCACGGAGTTGTGGGCTTTGAAA-GGA-AC
1095620 AAGAG
63 AAG-G
* * * * *
1095625 TGCCACGTAGTTGTGGGCTTTGAAAA-G--AAGGTGCCACGAAGTTGTGGACTTTGAAAGGAACA
1 TGCCACGGAGTCGTGGAC-TT-AAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAGGAACA
1095687 AGG
64 AGG
* * * * *
1095690 TGCCACGGGGTCGTGGACTTAAAAAGAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAG
1 TGCCACGGAGTCGTGGACTTAAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAGGAACAAG
1095755 G
66 G
* * * * *
1095756 TGCCACGGAATTGTGGGCTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGC-TTAAAAGGAACA
1 TGCCACGGAGTCGTGGACTT--AAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAGGAACA
*
1095820 AGA
64 AGG
* * *
1095823 TGCCACGGGGTCGTGGACTTAAAAGGAACAAAGAGTGCCACAGAGTTGTGGGCTTTG-AA--AAG
1 TGCCACGGAGTCGTGGACTTAAAAGG-A-AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAGGAAC
1095885 AAGG
63 AAGG
* * * *
1095889 TGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGGGTCGTGGAC-TT-AAACAGAACA
1 TGCCACGGAGTCGTGGACTTAAAAGGAA-AAGGTGCCACGGAGTTGTGGGCTTTGAAA-GGAAC-
*
1095952 AAAAG
63 -AAGG
* * *
1095957 TGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTG-AA-GAA-A
1 TGCCACGGAGTCGTGGACTTAAAAGG-AAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAGGAACA
1096019 AGG
64 AGG
*
1096022 ATGCCACTGAGTCGTGGACTT
1 -TGCCACGGAGTCGTGGACTT
1096043 TGAAGAAAAA
Statistics
Matches: 345, Mismatches: 49, Indels: 51
0.78 0.11 0.11
Matches are distributed among these distances:
63 8 0.02
64 19 0.06
65 28 0.08
66 105 0.30
67 59 0.17
68 79 0.23
69 36 0.10
70 7 0.02
71 4 0.01
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.19
Consensus pattern (66 bp):
TGCCACGGAGTCGTGGACTTAAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAGGAACAAG
G
Found at i:1095836 original size:133 final size:132
Alignment explanation
Indices: 1095552--1096073 Score: 510
Period size: 133 Copynumber: 3.9 Consensus size: 132
1095542 AAAAGGTTGA
* * * *
1095552 AAGATGCCACGAAGTTGTGGACTTAAAAGGAATAAG-GTGCCACGAAGTTGTGGACTTT-AAAAG
1 AAGATGCCACGAAGTCGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA-
* * * *
1095615 GGAGAAAGAGTGCCACGTAGTTGTGGGCTTTGAAAAG--AAGGTGCCACGAAGTTGTGGACTTTG
65 -GA-AAAG-GTGCCACGGAGTTGTGGGC-TTAAAAAGAAAAGGTGCCACGGAGTTGTGGAC-TTA
1095678 AAAGGAAC
125 AAAGGAAC
* ** * *
1095686 AAGGTGCCACGGGGTCGTGGACTTAAAAAG-AAAAG-GTGCCACGGAGTGGTGGGCTTTGAAAAG
1 AAGATGCCACGAAGTCGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* *
1095749 AAAAAGGTGCCACGGAATTGTGGGCTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA
66 -AAAAGGTGCCACGGAGTTGTGGGCTT-AAAAAG-AAAAGGTGCCACGGAGTTGTGGACTTAAAA
1095814 GGAAC
128 GGAAC
** *
1095819 AAGATGCCACGGGGTCGTGGACTTAAAAGGAACAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAA
1 AAGATGCCACGAAGTCGTGGACTTAAAAGGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA
* * * * *
1095884 G--AAGGTGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGGGTCGTGGACTTAAACA
65 GAAAAGGTGCCACGGAGTTGTGGGCTTAAAAAGAA-AAGGTGCCACGGAGTTGTGGACTTAAA-A
1095947 -GAAC
128 GGAAC
* * *
1095951 AAAAAGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTG--A
1 -AAGA-TGCCACGAAGTCGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAA
* * * ** ** * *
1096014 AGAAAAGGATGCCACTGAGTCGTGGACTT-TGAAGAAAAAATGCCACTGAGTCGTGGACTT
64 AGAAAAGG-TGCCACGGAGTTGTGGGCTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTT
1096074 TGAGACAAAA
Statistics
Matches: 332, Mismatches: 40, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
130 2 0.01
131 27 0.08
132 58 0.17
133 122 0.37
134 93 0.28
135 4 0.01
136 26 0.08
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (132 bp):
AAGATGCCACGAAGTCGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
AAAAGGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
AC
Found at i:1095891 original size:167 final size:165
Alignment explanation
Indices: 1095550--1096073 Score: 489
Period size: 167 Copynumber: 3.2 Consensus size: 165
1095540 GAAAAAGGTT
* * *
1095550 GAAAGATGCCACGAAGTTGTGGACTTAAAAGGAATAAGGTGCCAC-GAAGTTGTGGACTTTAAAA
1 GAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGAA-TTGTGGAC-TTAAAA
** * * * * * * *
1095614 GGGAGAAAGAGTGCCACGTAGTTGTGGGCTTTGAA--AAGAAGGTGCCACGAAGTTGTGGACTTT
64 AAGAAAAAG-GTGCCACGAAGTTGTGGGCTTAGAAGGAAAAAGATGCCACGGAGTCGTGGACTTT
* * *
1095677 GAAAGGAACAAGGTGCCACGGGGTCGTGGACTTAAAAA
128 AAAAGGAACAAGGTGCCACAGAGTCGTGGACTTAAAAA
* * * *
1095715 GAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAA-GAAAAAGGTGCCACGGAATTGTGGGCTTAAA
1 G-AAAGGTGCCACGGAGTCGTGGAC-TT-AAAAGGAATAAGGTGCCACGGAATTGTGGACTTAAA
* * * *
1095779 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAACAAGATGCCACGGGGTCGTGGAC-TT
63 AAAGAAAAAGGTGCCACGAAGTTGTGGGCTTAGAAGGAAAAAGATGCCACGGAGTCGTGGACTTT
* * *
1095843 AAAAGGAACAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAA
128 AAAAGGAAC-AAG-GTGCCACAGAGTCGTGGAC-TTAAAAA
** *
1095884 G-AAGGTGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGGGTCGTGGACTTAAACAG
1 GAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGAATTGTGGACTTAAA-A-
* * * *
1095948 AACAAAAA-GTGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
64 AAGAAAAAGGTGCCACGAAGTTGTGGGCTTAGAAGGAAAAAGA-TGCCACGGAGTCGTGGACTTT
* *
1096012 -GAA-GAA-AAGGATGCCACTGAGTCGTGGACTTTGAAGAAA
128 AAAAGGAACAAGG-TGCCACAGAGTCGTGGAC-TT-AA-AAA
*
1096051 -AAA--TGCCACTGAGTCGTGGACTT
1 GAAAGGTGCCACGGAGTCGTGGACTT
1096074 TGAGACAAAA
Statistics
Matches: 297, Mismatches: 44, Indels: 36
0.79 0.12 0.10
Matches are distributed among these distances:
164 1 0.00
165 67 0.23
166 70 0.24
167 104 0.35
168 46 0.15
169 9 0.03
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (165 bp):
GAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGAATTGTGGACTTAAAAAA
GAAAAAGGTGCCACGAAGTTGTGGGCTTAGAAGGAAAAAGATGCCACGGAGTCGTGGACTTTAAA
AGGAACAAGGTGCCACAGAGTCGTGGACTTAAAAA
Found at i:1096053 original size:66 final size:66
Alignment explanation
Indices: 1095554--1096099 Score: 393
Period size: 66 Copynumber: 8.3 Consensus size: 66
1095544 AAGGTTGAAA
* * * * * * * * *
1095554 GATGCCACGAAGTTGTGGACTTAAAAGGAATAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAG
1 GATGCCACGGAGTCGTGGACTTAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTT-GAA-GAAC
*
1095619 AAA
64 AAG
* * * * * *
1095622 GAGTGCCACGTAGTTGTGGGCTT---TGAAAAGAAGGTGCCACGAAGTTGTGGACTTTGAAAGGA
1 GA-TGCCACGGAGTCGTGGACTTAAAAGAAAA-AAGGTGCCACGGAGTTGTGGGCTTTG-AA-GA
1095684 ACAAG
62 ACAAG
* * * *
1095689 G-TGCCACGGGGTCGTGGACTTAAAA-AGAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAA
1 GATGCCACGGAGTCGTGGACTTAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTG--AAGAAC
1095752 AAG
64 AAG
* * * * **
1095755 G-TGCCACGGAATTGTGGGCTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAC
1 GATGCCACGGAGTCGTGGACTTAAAAGA-AAAAAGGTGCCACGGAGTTGTGGGCTTTGAA-GAAC
1095819 AA-
64 AAG
* * * *
1095821 GATGCCACGGGGTCGTGGACTTAAAAGGAACAAAGAGTGCCACAGAGTTGTGGGCTTTGAA-AAG
1 GATGCCACGGAGTCGTGGACTTAAAA-GAAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAGAAC
1095885 AAG
64 AAG
* * * * * **
1095888 G-TGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGGGTCGTGGACTTAAACAGAACA
1 GATGCCACGGAGTCGTGGACTTAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTGA-AGAACA
*
1095952 AA
65 AG
* * * * *
1095954 AAGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAGAA-
1 GA-TGCCACGGAGTCGTGGACTTAAAAGAAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAGAAC
1096018 AAG
64 AAG
* ** * * *
1096021 GATGCCACTGAGTCGTGGACTTTGAAGAAAAAA--TGCCACTGAGTCGTGGACTTTG-AG-ACAA
1 GATGCCACGGAGTCGTGGACTTAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAACAA
1096082 -
66 G
* *
1096082 AATGCCACTGAGTCGTGG
1 GATGCCACGGAGTCGTGG
1096100 GCTTTAAGAA
Statistics
Matches: 387, Mismatches: 71, Indels: 47
0.77 0.14 0.09
Matches are distributed among these distances:
61 18 0.05
62 4 0.01
63 19 0.05
64 18 0.05
65 22 0.06
66 113 0.29
67 74 0.19
68 82 0.21
69 37 0.10
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.19
Consensus pattern (66 bp):
GATGCCACGGAGTCGTGGACTTAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAACAA
G
Found at i:1096060 original size:31 final size:31
Alignment explanation
Indices: 1095951--1096140 Score: 190
Period size: 31 Copynumber: 6.1 Consensus size: 31
1095941 TAAACAGAAC
* * *
1095951 AAAAAGTGCCAC-GAAGTTGTGGACTTAGAAGG
1 AAAAAATGCCACTG-AGTCGTGGACTTTGAA-G
* * *
1095983 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAG
1 AAAAA-A-TGCCACTGAGTCGTGGACTTTGAAG
*
1096016 AAAAGGATGCCACTGAGTCGTGGACTTTGAAG
1 AAAA-AATGCCACTGAGTCGTGGACTTTGAAG
1096048 AAAAAATGCCACTGAGTCGTGGACTTTG-AG
1 AAAAAATGCCACTGAGTCGTGGACTTTGAAG
* *
1096078 ACAAAATGCCACTGAGTCGTGGGCTTT-AAG
1 AAAAAATGCCACTGAGTCGTGGACTTTGAAG
* * *
1096108 AAGAGATTGCCACTGAGTCATGGACTTT-AAG
1 AA-AAAATGCCACTGAGTCGTGGACTTTGAAG
1096139 AA
1 AA
1096141 GGTATTTGAC
Statistics
Matches: 137, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
30 30 0.22
31 49 0.36
32 31 0.23
33 6 0.04
34 20 0.15
35 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.22
Consensus pattern (31 bp):
AAAAAATGCCACTGAGTCGTGGACTTTGAAG
Found at i:1096095 original size:61 final size:61
Alignment explanation
Indices: 1095951--1096140 Score: 190
Period size: 61 Copynumber: 3.0 Consensus size: 61
1095941 TAAACAGAAC
* * * * *
1095951 AAAAAGTGCCAC-GAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
1 AAAAA-TGCCACTG-AGTCGTGGACTTTGAA-GAAAAA-A-TGCCACTGAGTCGTGGACTTTGAA
1096015 G
61 G
1096016 AAAAGGATGCCACTGAGTCGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTG-AG
1 AAAA--ATGCCACTGAGTCGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGAAG
* * * *
1096078 ACAAAATGCCACTGAGTCGTGGGCTTT-AAGAAGAGATTGCCACTGAGTCATGGACTTT-AAG
1 A-AAAATGCCACTGAGTCGTGGACTTTGAAGAA-AAAATGCCACTGAGTCGTGGACTTTGAAG
1096139 AA
1 AA
1096141 GGTATTTGAC
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
60 6 0.05
61 46 0.42
62 3 0.03
63 22 0.20
64 1 0.01
65 10 0.09
66 20 0.18
67 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.22
Consensus pattern (61 bp):
AAAAATGCCACTGAGTCGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGAAG
Found at i:1097130 original size:25 final size:24
Alignment explanation
Indices: 1097082--1097133 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
1097072 GGGTTTTTCC
*
1097082 TTTCTCTTTTTTTTTGTTTGTTTG
1 TTTCTCTTTTTTTTTCTTTGTTTG
1097106 TTTCTTCTTTTTTTTTCCTTT-TTTG
1 TTTC-TCTTTTTTTTT-CTTTGTTTG
1097131 TTT
1 TTT
1097134 TGTTTCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 4 0.16
25 18 0.72
26 3 0.12
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.81
Consensus pattern (24 bp):
TTTCTCTTTTTTTTTCTTTGTTTG
Found at i:1097139 original size:17 final size:16
Alignment explanation
Indices: 1097098--1097146 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
1097088 TTTTTTTTTG
*
1097098 TTTG-TTTGTTTCTTC
1 TTTGTTTTGTTTCTTT
*
1097113 TTT-TTTT-TTCCTTT
1 TTTGTTTTGTTTCTTT
1097127 TTTGTTTTGTTTCTTT
1 TTTGTTTTGTTTCTTT
1097143 TTTG
1 TTTG
1097147 GAAACGAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 8 0.29
15 10 0.36
16 10 0.36
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.80
Consensus pattern (16 bp):
TTTGTTTTGTTTCTTT
Found at i:1104487 original size:19 final size:18
Alignment explanation
Indices: 1104463--1104560 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
1104453 TAGCTTAAAT
1104463 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
1104482 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1104495 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
1104514 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1104527 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
1104547 TGTATCGATACAAA
1 TGTATCGATACAAA
1104561 TCGTTGAATT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1104500 original size:13 final size:13
Alignment explanation
Indices: 1104482--1104538 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1104472 ACAAAACTTA
1104482 TGTATCGATACAT
1 TGTATCGATACAT
1104495 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
1104513 ATGTATCGATACAT
1 -TGTATCGATACAT
1104527 TGTATCGATACA
1 TGTATCGATACA
1104539 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1104502 original size:32 final size:32
Alignment explanation
Indices: 1104461--1104558 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
1104451 AGTAGCTTAA
*
1104461 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
1104493 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
1104525 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
1104558 A
1 A
1104559 AATCGTTGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:1106496 original size:20 final size:22
Alignment explanation
Indices: 1106471--1106510 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
1106461 AACAAAAAAT
1106471 GGGAG-AAATTTTT-ATTAAGG
1 GGGAGAAAATTTTTAATTAAGG
1106491 GGGAGAAAATTTTTAATTAA
1 GGGAGAAAATTTTTAATTAA
1106511 AAGGGAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 8 0.44
22 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.25, T:0.35
Consensus pattern (22 bp):
GGGAGAAAATTTTTAATTAAGG
Found at i:1106516 original size:22 final size:20
Alignment explanation
Indices: 1106466--1106517 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
1106456 TTGGAAACAA
1106466 AAAATGGGAGAAATTTTTATT
1 AAAA-GGGAGAAATTTTTATT
**
1106487 AAGGGGGAGAAAATTTTTAATT
1 AAAAGGGAG-AAATTTTT-ATT
1106509 AAAAGGGAG
1 AAAAGGGAG
1106518 TTATAATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 5 0.20
21 10 0.40
22 10 0.40
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (20 bp):
AAAAGGGAGAAATTTTTATT
Found at i:1109221 original size:165 final size:163
Alignment explanation
Indices: 1109007--1109570 Score: 531
Period size: 165 Copynumber: 3.4 Consensus size: 163
1108997 ATTTTCATCA
* * *
1109007 GTTTAAAATTTTTAAAATTTATTAAATATTATTATTTAA-TCACCATTAAATCAGTTTTAGAAAA
1 GTTTAAAATTTTTAAAATTCATCAAATATTATCATTTAATTCA-CATTAAATCAGTTTT-GAAAA
* * *
1109071 TCCCTTTTGTTTCATGAGTTTTTCATTTTTTTCCTTAAAGTTCTTTTATTTTCCAAAATACGAAG
64 TTCATTTT-TTTCATAAGTTTTTCATTTTTTT-CTTAAA-TTCTTTTATTTTCCAAAATACGAAG
*
1109136 TTTTCTACTCCGTAAAAGTTTTC-GAG-ATTTTTCTTG
126 TTTTCTAATCCGTAAAAGTTTTCGGAGAATTTTTCTTG
* *
1109172 GTTTATAATTTTTAAAATTCATCAAATATTATCATTTAATTCACATTAAATTAGTTTTGAACAAT
1 GTTTAAAATTTTTAAAATTCATCAAATATTATCATTTAATTCACATTAAATCAGTTTTGAA-AAT
* * ** *
1109237 TTATTTATTTTCATAAGTTTTTCA-TTTTTTCTTTGAAATT-TTTCTGTTTT-TGAAATACGGAG
65 TCATTT-TTTTCATAAGTTTTTCATTTTTTTC-TT-AAATTCTTT-TATTTTCCAAAATACGAAG
* *
1109299 TTTTCTAATCCGTGAATA-TTTTCAGGGGAATTTTTCTTG
126 TTTTCTAATCCGT-AAAAGTTTTC-GGAGAATTTTTCTTG
* * * * * * *
1109338 GTTTATAA-TTTTAGAATTCATCAAATATCATCATTTAATTCATAGTAAATTATTTTTGAAAAAT
1 GTTTAAAATTTTTAAAATTCATCAAATATTATCATTTAATTCACATTAAATCAGTTTTG-AAAAT
* * * * *
1109402 TCATATATTTTCATAAGTTTTTCATTTTTCTT-TGAAAATCTTCTATTTTCGAAAA-AC-AGAGT
65 TCAT-TTTTTTCATAAGTTTTTCATTTTT-TTCTTAAATTCTTTTATTTTCCAAAATACGA-AGT
* * * *
1109464 TTTCTATTCCATAAATGTTTTCGTGAGAAATTTTTCTCG
127 TTTCTAATCCGTAAAAGTTTTCG-GAG-AATTTTTCTTG
* * * * *
1109503 GTTTAAAATTTTTAAAATTCATCTAAA-ATTTTCATTAAATTCAAATTAAAACAATTTTGAAAAA
1 GTTTAAAATTTTTAAAATTCATC-AAATATTATCATTTAATTCACATTAAATCAGTTTTG-AAAA
1109567 TTCA
64 TTCA
1109571 ATCTATTTTA
Statistics
Matches: 331, Mismatches: 46, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
163 33 0.10
164 52 0.16
165 166 0.50
166 75 0.23
167 5 0.02
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.48
Consensus pattern (163 bp):
GTTTAAAATTTTTAAAATTCATCAAATATTATCATTTAATTCACATTAAATCAGTTTTGAAAATT
CATTTTTTTCATAAGTTTTTCATTTTTTTCTTAAATTCTTTTATTTTCCAAAATACGAAGTTTTC
TAATCCGTAAAAGTTTTCGGAGAATTTTTCTTG
Found at i:1110069 original size:10 final size:10
Alignment explanation
Indices: 1110043--1110077 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
1110033 AAACATGATG
*
1110043 AAAAGAAGAA
1 AAAAAAAGAA
1110053 GAAAAAAAGAA
1 -AAAAAAAGAA
1110064 AAAAAAAGAA
1 AAAAAAAGAA
1110074 AAAA
1 AAAA
1110078 GGATATTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:1111457 original size:156 final size:154
Alignment explanation
Indices: 1111169--1111620 Score: 485
Period size: 156 Copynumber: 2.9 Consensus size: 154
1111159 TTTTATCCTT
*
1111169 TAAGGTTACCGAGATACTTTCATGTCGAAGGTATACCTACAAGGGCATTTTATAATTTTTAAGAA
1 TAAGGTTACCG-GATACTTTCATGTCGAAGGTATACCTATAAGGGCATTTTATAATTTTTAAGAA
* ** * * * *
1111234 CCGAGTCCTAGGTTGTCATCAAGTCCATTTTATGCCAAAGATGGGTATTTAGAATAGGTTCATCC
65 CCGAGTCATAGACTATCACCAAGTCCATGTTATGCCAAAGATGGGTATATAGAATAGGTTCATCC
1111299 TATAACTTATCATTTTAGTGTCCAC
130 TATAACTTATCATTTTAGTGTCCAC
* *
1111324 TAAGGTTACCGGATACTTTCATGTCGAAGGTATACCTATAGGGGCATTTTCATAATTTTTTAGAA
1 TAAGGTTACCGGATACTTTCATGTCGAAGGTATACCTATAAGGGCATTTT-ATAATTTTTAAGAA
** *
1111389 CCGAGTCATAGACTATCACCGGGTCTGC-TGTTATGCCAAATG-TGGGTATATAGAATAGTTTCA
65 CCGAGTCATAGACTATCACCAAGTC--CATGTTATGCCAAA-GATGGGTATATAGAATAGGTTCA
* *
1111452 TCCTATTACTTATCATTTTAGTGTCCAT
127 TCCTATAACTTATCATTTTAGTGTCCAC
** * * * * *
1111480 TAAGGTTACCAAATACTTTCAAGTCGAAGGTCTACCCATAAGGGCATTTTTGTAATTTTATCAGA
1 TAAGGTTACCGGATACTTTCATGTCGAAGGTATACCTATAAGGGCA-TTTTATAATTTT-TAAGA
* * ** * *** * ** * * *
1111545 ATCGAGTCCTAGGTTGTCATTGAGTCCACTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCAT
64 ACCGAGTCATAGACTATCACCAAGTCCA-TGTTATGCCAAAGATGGGTATATAGAATAGGTTCAT
*
1111610 CCTATTACTTA
128 CCTATAACTTA
1111621 GGATGATTTT
Statistics
Matches: 251, Mismatches: 37, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
154 37 0.15
155 43 0.17
156 104 0.41
157 67 0.27
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (154 bp):
TAAGGTTACCGGATACTTTCATGTCGAAGGTATACCTATAAGGGCATTTTATAATTTTTAAGAAC
CGAGTCATAGACTATCACCAAGTCCATGTTATGCCAAAGATGGGTATATAGAATAGGTTCATCCT
ATAACTTATCATTTTAGTGTCCAC
Found at i:1115688 original size:166 final size:165
Alignment explanation
Indices: 1115500--1116208 Score: 844
Period size: 166 Copynumber: 4.3 Consensus size: 165
1115490 TTATCAGATC
* * * *
1115500 AGTTTTTAAAAATTCCTTCATTTTCATTAGTTTTTGATTTTTTTCTTGAAATTTTCTTGTTTTCG
1 AGTTTTAAAAAATTCCTTCATTTTCATTAGTTTTTGATTTTTTTCTTGAAATTTTCATATTTTTG
* * *
1115565 AAATACGGAGTTTTCAATTCCGTAACTTTTTTCAAGGGAATTTTTCTTGGTTTTTTATTTTTAAA
66 AAATACGGAGTTTTCTATTCCGTAACTTTTTTC-AGGGGATTTTTCTTGGTTTTTAATTTTTAAA
* *
1115630 ATTCATCAAATTTTATTATTTATTTCATATTAAATT
130 ATTCATAAAATATTATTATTTATTTCATATTAAATT
* * * * *
1115666 AGTTTTAAAAAATCCCTTCATTTTCTTTAGTTTTTAATTTTTTCCTTGAAATTTTCCTATTTTTG
1 AGTTTTAAAAAATTCCTTCATTTTCATTAGTTTTTGATTTTTTTCTTGAAATTTTCATATTTTTG
* * ** * * * *
1115731 AAATACAGAGTTTTTTATTTTGTTAA-TTTTTTTAGGGTGATTTTTTTTTGTTTTTAATTTCTAA
66 AAATACGGAGTTTTCTATTCCG-TAACTTTTTTCAGGG-GATTTTTCTTGGTTTTTAATTTTTAA
* *
1115795 AATTCATAAAATATTATTATTTATTTCCTATTGAATT
129 AATTCATAAAATATTATTATTTATTTCATATTAAATT
* * * *
1115832 AGTTTTCAAAAATTACTTCATTTTCATTAGTTTTTGAATTTTTTCTTGAAATCTTCATATTTTTG
1 AGTTTTAAAAAATTCCTTCATTTTCATTAGTTTTTGATTTTTTTCTTGAAATTTTCATATTTTTG
* * * * * *
1115897 AGATACGGAGTTTTCTTTTCTGTAAATTTTTT-GGAGGGATTTTTTTTGGTTTTTAATTTTTAAA
66 AAATACGGAGTTTTCTATTCCGTAACTTTTTTCAG-GGGATTTTTCTTGGTTTTTAATTTTTAAA
* * *
1115961 ATTTATAAAATATTATTATTTATTTCATAGTAAATC
130 ATTCATAAAATATTATTATTTATTTCATATTAAATT
* * * * *
1115997 AGTTTTTAAAATTTCCTTCATTTTCATTAGTTTTTGAATTTTTTCCTTAAAATTTTCATGTTTTT
1 AGTTTTAAAAAATTCCTTCATTTTCATTAGTTTTTG-ATTTTTTTCTTGAAATTTTCATATTTTT
* * * * *
1116062 AAAATATGAAGCTTTCTATTCC----C--TTTTCAGGGGATTTTTCTTGGTTTTTAATTTTCAAA
65 GAAATACGGAGTTTTCTATTCCGTAACTTTTTTCAGGGGATTTTTCTTGGTTTTTAATTTTTAAA
*
1116121 ATTCATAAAATATTATTATTTATTCCATATTAAATT
130 ATTCATAAAATATTATTATTTATTTCATATTAAATT
* *
1116157 AATTTTAAAAAATTCATTCATTTTCATTCA--TTTTGATTTTTTTCTTGAAATT
1 AGTTTTAAAAAATTCCTTCATTTTCATT-AGTTTTTGATTTTTTTCTTGAAATT
1116209 ATCCTTTTTC
Statistics
Matches: 462, Mismatches: 74, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
158 15 0.03
159 5 0.01
160 87 0.19
161 2 0.00
165 97 0.21
166 253 0.55
167 3 0.01
ACGTcount: A:0.27, C:0.09, G:0.08, T:0.55
Consensus pattern (165 bp):
AGTTTTAAAAAATTCCTTCATTTTCATTAGTTTTTGATTTTTTTCTTGAAATTTTCATATTTTTG
AAATACGGAGTTTTCTATTCCGTAACTTTTTTCAGGGGATTTTTCTTGGTTTTTAATTTTTAAAA
TTCATAAAATATTATTATTTATTTCATATTAAATT
Found at i:1118067 original size:15 final size:15
Alignment explanation
Indices: 1118049--1118079 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1118039 CGAAATGAAT
1118049 TTTTTGAAAATAAAA
1 TTTTTGAAAATAAAA
*
1118064 TTTTTGAAAATTAAA
1 TTTTTGAAAATAAAA
1118079 T
1 T
1118080 AAAATTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
TTTTTGAAAATAAAA
Found at i:1118360 original size:30 final size:30
Alignment explanation
Indices: 1118324--1118383 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
1118314 GCTTTTGGCA
1118324 GCATGTTTAATGCCATGAAAATGACCTTGT
1 GCATGTTTAATGCCATGAAAATGACCTTGT
*
1118354 GCATGTTTAATGCCATGAAAATGACTTTGT
1 GCATGTTTAATGCCATGAAAATGACCTTGT
1118384 AAACATTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (30 bp):
GCATGTTTAATGCCATGAAAATGACCTTGT
Found at i:1119328 original size:156 final size:156
Alignment explanation
Indices: 1119030--1119381 Score: 372
Period size: 156 Copynumber: 2.3 Consensus size: 156
1119020 CTACAGGCAT
* * ** * *
1119030 GAAAAA-GATAAGTAAAAGGATAAACCTATAGTAAATGCATACATTTGGCATAAAAACGACCTAG
1 GAAAAAGGATAAGTAAAAAGACAAACCTATCCTAAATGCATACATTTAGCATAAAAACAACCTAG
* ** * **** * **
1119094 TGATGACTTAGAACTTGGTTATAAGGAAATTACGAAAATGTTGTTCATGTATACTTTCGGCGTGA
66 TGATGACTTAGAACTTGATTATAAAAAAATTACCAAAATACCCTT-ATGTATACCTTCAACGTGA
* * **
1119159 AAGTATCCTAATAACTTTAAAAAACAC
130 AAGTAACCCAATAACCCTAAAAAACAC
* *
1119186 -AAAAAGGATAAGTAAAAAGACAAACCTATCCTAAATGTATACATTTAGCATAAAATCAA-CTCA
1 GAAAAAGGATAAGTAAAAAGACAAACCTATCCTAAATGCATACATTTAGCATAAAAACAACCT-A
* *
1119249 GTGATGACTTAGGACTTGATTATAAAAAAATTACCAAAATACCCTT-TGGATATACCTTCAATGT
65 GTGATGACTTAGAACTTGATTATAAAAAAATTACCAAAATACCCTTAT-G-TATACCTTCAACGT
*
1119313 GAAAGTAACCCAATAACCCTAAAAGACAC
128 GAAAGTAACCCAATAACCCTAAAAAACAC
* *
1119342 GAAAATGGATAAAT-AAAAGAACAAACCTATCCTAAATGCA
1 GAAAAAGGATAAGTAAAAAG-ACAAACCTATCCTAAATGCA
1119382 CACCTTTGAC
Statistics
Matches: 161, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
154 1 0.01
155 8 0.05
156 122 0.76
157 30 0.19
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.25
Consensus pattern (156 bp):
GAAAAAGGATAAGTAAAAAGACAAACCTATCCTAAATGCATACATTTAGCATAAAAACAACCTAG
TGATGACTTAGAACTTGATTATAAAAAAATTACCAAAATACCCTTATGTATACCTTCAACGTGAA
AGTAACCCAATAACCCTAAAAAACAC
Found at i:1119473 original size:157 final size:156
Alignment explanation
Indices: 1119142--1119476 Score: 340
Period size: 157 Copynumber: 2.1 Consensus size: 156
1119132 TGTTGTTCAT
* * * ** *
1119142 GTATACTTTCGGCGTGAAAGTATCCTAATAACTTTAAAAAACACAAAAAGGATAAGTAAAAAGAC
1 GTATACTTTCGACGTGAAAGTAACCCAATAACCCTAAAAAACACAAAAAGGATAAATAAAAAGAC
* * * * *
1119207 AAACCTATCCTAAATGTATACATTTAGCATAAAATCAACTCAGTGATGACTTAGGACTTGATTAT
66 AAACCTATCCTAAATGCACACATTTAGCATAAAATCAACTCAGTGATGACCTAAGACTAGATTAT
1119272 AAAAAAATTACCAAAATACCCTTTGG
131 AAAAAAATTACCAAAATACCCTTTGG
* * * * * *
1119298 ATATACCTTCAATGTGAAAGTAACCCAATAACCCTAAAAGACACGAAAATGGATAAAT-AAAAGA
1 GTATACTTTCGACGTGAAAGTAACCCAATAACCCTAAAAAACAC-AAAAAGGATAAATAAAAAG-
* * *
1119362 ACAAACCTATCCTAAATGCACACCTTT-GACATAAAAGT-GACTCGGTGATGACCTAAGACTCAG
64 ACAAACCTATCCTAAATGCACACATTTAG-CATAAAA-TCAACTCAGTGATGACCTAAGACT-AG
** * *
1119425 -TGT-TAGGAAAATTACTAAAAT-GCCTTTGAG
126 AT-TATAAAAAAATTACCAAAATACCCTTTG-G
*
1119455 GTATACTTTCGACATGAAAGTA
1 GTATACTTTCGACGTGAAAGTA
1119477 CCTCGGTGAT
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
156 46 0.32
157 94 0.66
158 3 0.02
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.25
Consensus pattern (156 bp):
GTATACTTTCGACGTGAAAGTAACCCAATAACCCTAAAAAACACAAAAAGGATAAATAAAAAGAC
AAACCTATCCTAAATGCACACATTTAGCATAAAATCAACTCAGTGATGACCTAAGACTAGATTAT
AAAAAAATTACCAAAATACCCTTTGG
Found at i:1121233 original size:18 final size:17
Alignment explanation
Indices: 1121147--1121234 Score: 70
Period size: 18 Copynumber: 4.9 Consensus size: 17
1121137 TGAAACTAAT
1121147 TTAAAAATAAAATAAAA
1 TTAAAAATAAAATAAAA
* *
1121164 -TAAAATAAAAAATCCACAA
1 TTAAAA-ATAAAAT--AAAA
*
1121183 TTAAAAAGAAAATTAAAA
1 TTAAAAATAAAA-TAAAA
* *
1121201 TTAATAATAATAATAAATT
1 TTAAAAATAA-AATAAA-A
1121220 TTAAAAATAAAATAA
1 TTAAAAATAAAATAA
1121235 TGAAAAAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
16 5 0.09
17 6 0.11
18 20 0.36
19 19 0.34
20 6 0.11
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.26
Consensus pattern (17 bp):
TTAAAAATAAAATAAAA
Found at i:1123923 original size:25 final size:25
Alignment explanation
Indices: 1123871--1123933 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 25
1123861 ATCTATATAA
* **
1123871 TAAATAATTAAAATTATATTTTTAT
1 TAAATAATTAAAATTATACTCATAT
* *
1123896 TAAATATTTAAAATTATACTCATGT
1 TAAATAATTAAAATTATACTCATAT
* *
1123921 TAAAAAAATAAAA
1 TAAATAATTAAAA
1123934 AGAATTAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (25 bp):
TAAATAATTAAAATTATACTCATAT
Found at i:1123943 original size:17 final size:17
Alignment explanation
Indices: 1123923--1123965 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
1123913 ACTCATGTTA
*
1123923 AAAAAATAAAAAGAATT
1 AAAAAATAAAAAGAAAT
* *
1123940 AAAAATTAAAAATAAAT
1 AAAAAATAAAAAGAAAT
1123957 AAAATAATA
1 AAAA-AATA
1123966 TATTTTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAAAATAAAAAGAAAT
Found at i:1125067 original size:2 final size:2
Alignment explanation
Indices: 1125062--1125096 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
1125052 TCTCTCTCTC
* *
1125062 TA TA TA TG TA TA TA TA TA TA TA TG TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1125097 GTGGGTGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1125081 original size:16 final size:16
Alignment explanation
Indices: 1125062--1125096 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
1125052 TCTCTCTCTC
1125062 TATATATGTATATATA
1 TATATATGTATATATA
1125078 TATATATGTATATATA
1 TATATATGTATATATA
1125094 TAT
1 TAT
1125097 GTGGGTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (16 bp):
TATATATGTATATATA
Found at i:1125853 original size:15 final size:16
Alignment explanation
Indices: 1125809--1125842 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
1125799 CAGATCATAA
1125809 CAACCATTGATGTTCT
1 CAACCATTGATGTTCT
1125825 CAACCATTGATGTTCT
1 CAACCATTGATGTTCT
1125841 CA
1 CA
1125843 CCTATGATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (16 bp):
CAACCATTGATGTTCT
Found at i:1130103 original size:2 final size:2
Alignment explanation
Indices: 1130098--1130134 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1130088 ATATATATAT
1130098 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1130135 AGGGAAATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1130991 original size:2 final size:2
Alignment explanation
Indices: 1130984--1131014 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1130974 TGCGTGTTAG
1130984 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1131015 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1131019 original size:2 final size:2
Alignment explanation
Indices: 1131014--1131047 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1131004 ATATATATAT
1131014 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1131048 GAAAGCAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Done.