Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1390
Parameters: 2 7 7 80 10 50 1000
Length:  40718

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80--121
16
2.9
14
77
22
50
40
0
0
59
0.97
85--121
17
2.2
17
90
9
58
45
0
0
54
1.00
397--474
33
2.3
33
80
10
86
51
0
1
47
1.09
487--537
22
2.3
23
82
3
59
64
3
3
27
1.28
327--536
111
1.9
112
80
8
250
53
2
2
41
1.26
835--1177
124
2.7
121
75
16
324
39
4
3
52
1.39
1149--1213
29
2.3
27
82
15
78
44
0
1
53
1.09
1867--1915
11
4.5
11
79
2
55
40
2
0
57
1.10
2153--2184
17
1.9
17
93
6
57
40
9
0
50
1.35
5462--5595
70
1.9
70
92
0
223
32
14
8
44
1.77
5521--5765
91
2.8
87
86
3
330
34
15
7
41
1.76
5706--5910
69
3.0
69
90
2
322
33
15
8
43
1.76
5839--6197
92
3.9
93
85
4
496
32
16
8
42
1.78
5840--6199
89
3.9
90
87
4
524
33
16
8
41
1.78
6143--6258
57
2.0
57
91
0
187
36
18
7
37
1.80
6200--6374
89
2.0
90
89
3
273
36
17
5
41
1.71
7073--7338
122
2.2
122
88
6
402
51
2
3
43
1.29
7339--7376
14
2.7
14
80
11
51
39
2
5
52
1.38
7600--7672
23
3.2
22
70
14
58
31
2
5
60
1.34
8790--8850
31
2.1
29
82
14
72
44
0
0
55
0.99
8873--8921
6
8.2
6
79
20
50
48
0
0
51
1.00
8869--8944
37
2.0
38
82
7
93
50
0
1
48
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10787--10829
19
2.2
20
87
8
61
58
2
0
39
1.11
10776--10962
91
2.1
87
89
6
286
47
6
0
45
1.28
11031--11097
35
2.0
34
83
13
86
58
0
1
40
1.07
11884--11930
2
23.5
2
100
0
94
0
48
0
51
1.00
17207--17235
15
1.9
15
100
0
58
75
6
0
17
1.01
22480--22504
6
4.2
6
100
0
50
48
16
16
20
1.82
25581--25633
19
2.7
19
79
2
52
50
11
7
30
1.65
30999--31042
18
2.4
19
92
3
72
45
0
4
50
1.22
31038--31067
15
2.0
15
93
0
51
63
0
0
36
0.95
31452--31486
17
2.1
17
89
10
54
17
0
8
74
1.06
32069--32127
29
2.0
29
87
6
84
55
0
3
40
1.16
32454--32554
49
2.0
50
83
12
129
47
2
2
46
1.33
32823--32868
13
3.6
13
75
16
51
41
0
0
58
0.98
32831--32877
25
1.9
24
91
4
76
42
0
0
57
0.98
33737--33804
27
2.6
26
77
13
68
51
0
0
48
1.00
36156--36205
15
3.2
16
77
8
59
52
0
0
48
1.00
36647--36676
5
6.0
5
92
0
51
60
3
0
36
1.14
38398--38441
14
2.9
16
75
25
58
54
0
4
40
1.21
39495--39561
35
1.9
35
85
11
93
43
1
0
55
1.09
40387--40421
15
2.3
15
90
0
52
65
0
0
34
0.93

Tables:   1

The End!