Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1393
Parameters: 2 7 7 80 10 50 1000
Length:  57121

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
547--599
19
2.8
19
85
5
63
1
18
0
79
0.83
558--603
20
2.3
20
92
7
76
0
19
0
80
0.71
547--603
24
2.3
26
82
14
75
1
19
0
78
0.83
547--603
10
5.7
10
76
21
57
1
19
0
78
0.83
558--611
19
2.8
19
83
8
56
0
24
0
75
0.80
1135--1183
15
3.3
15
80
11
57
59
0
0
40
0.98
1278--1302
2
12.5
2
100
0
50
52
0
0
48
1.00
2535--2599
33
2.0
32
85
11
87
32
18
13
35
1.90
2627--2679
20
2.7
20
88
2
72
26
13
15
45
1.82
2629--2711
19
4.6
19
75
18
79
30
12
15
42
1.83
2650--2726
32
2.4
32
95
0
136
35
10
15
38
1.82
9258--9284
10
2.7
10
100
0
54
0
0
22
77
0.76
18972--19095
1
124.0
1
70
0
68
83
11
3
1
0.82
18972--19095
10
12.5
10
75
14
98
83
11
3
1
0.82
18972--19095
36
3.4
36
83
4
160
83
11
3
1
0.82
18973--19095
46
2.7
46
90
9
200
83
11
3
1
0.83
20535--20858
30
11.1
29
81
7
322
32
27
16
23
1.96
20535--20853
58
5.5
58
84
7
382
32
27
16
23
1.96
20533--20849
88
3.7
85
85
6
406
32
27
17
22
1.96
20860--20949
43
2.1
43
93
0
153
26
24
17
31
1.97
20903--21056
52
2.9
53
80
4
184
24
24
16
35
1.95
21648--21808
52
3.1
52
97
0
295
35
18
16
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28198--28223
13
2.0
13
100
0
52
38
15
15
30
1.88
28175--28243
34
2.1
32
86
10
95
34
15
14
34
1.89
28922--28956
17
2.1
17
100
0
70
22
22
5
48
1.72
30322--30363
20
2.0
21
90
4
68
9
28
42
19
1.82
30797--30833
13
2.8
13
87
0
56
37
13
16
32
1.87
35841--35871
16
1.9
16
100
0
62
25
22
0
51
1.48
38906--38937
12
2.5
13
90
10
57
50
0
0
50
1.00
41085--41119
18
1.9
18
88
0
52
17
31
0
51
1.45
45954--45994
22
2.0
20
85
9
55
48
4
0
46
1.23
48398--48618
103
2.1
102
85
4
291
28
25
11
33
1.91
50063--50105
20
2.0
22
82
8
54
48
0
0
51
1.00
55616--55679
32
2.0
32
90
6
103
29
10
20
39
1.87
55764--55788
13
1.9
13
100
0
50
36
16
16
32
1.90
55777--55826
19
2.5
20
80
6
75
28
12
28
32
1.92
56343--56388
23
2.0
23
91
4
76
36
28
0
34
1.58

Tables:   1

The End!