genome.fa.s1398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1398
Parameters: 2 7 7 80 10 50 1000
Length:  90993

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2103--2142	19	2.0	20	85	9	55	47	0	2	50	1.14
10230--10264	18	1.9	19	88	11	56	57	0	2	40	1.14
10333--10376	16	2.8	16	78	0	52	43	0	2	54	1.12
10417--10476	16	3.5	17	76	15	52	55	0	1	43	1.10
10952--11019	31	2.2	31	86	2	93	27	8	10	52	1.65
11531--11568	20	1.9	20	88	0	58	10	2	7	78	1.04
12222--12297	39	1.9	39	94	0	134	26	11	7	53	1.64
12322--12347	2	13.0	2	100	0	52	50	0	0	50	1.00
13440--13499	23	2.4	25	86	13	88	43	0	1	55	1.10
13450--13492	12	3.7	11	80	20	52	44	0	0	55	0.99
13501--13538	12	3.2	13	82	17	55	28	0	0	71	0.87
15045--15077	2	16.5	2	100	0	66	51	0	0	48	1.00
17732--17812	32	2.6	32	80	9	94	55	0	1	43	1.07
17790--17837	20	2.1	22	78	21	55	52	2	0	45	1.12
18204--18305	21	4.8	21	70	17	61	50	0	1	48	1.12
18239--18290	26	2.0	25	89	10	79	53	0	1	44	1.11
18232--18308	21	3.5	23	76	15	74	50	0	1	48	1.09
18385--18432	20	2.5	18	78	15	51	43	2	0	54	1.12
18384--18434	21	2.4	23	75	18	56	43	1	0	54	1.11
21215--21252	17	2.2	18	86	9	53	52	0	10	36	1.36
22384--22432	3	16.3	3	100	0	98	34	0	0	65	0.93
22716--22748	2	17.0	2	87	6	50	45	0	3	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24011--24045	17	2.1	17	88	0	52	68	5	0	25	1.11
24298--24333	18	2.0	18	88	0	54	66	0	0	33	0.92
24747--24928	34	5.4	34	79	2	161	26	6	24	42	1.77
24747--24928	68	2.7	67	82	2	204	26	6	24	42	1.77
25222--25285	19	3.4	19	85	8	85	32	12	14	40	1.83
29333--29490	1	158.0	1	77	0	118	0	8	5	86	0.72
29333--29496	32	5.1	32	97	2	294	0	9	5	85	0.74
29333--29512	98	1.9	95	83	8	238	1	10	6	81	0.93
39776--39994	34	6.5	34	84	0	269	26	7	25	40	1.83
39776--39994	68	3.2	67	86	1	305	26	7	25	40	1.83
39780--39994	102	2.1	101	88	1	322	26	7	25	40	1.83
40758--40803	21	2.2	22	88	7	69	39	0	4	56	1.19
43121--43189	33	2.1	33	100	0	138	50	8	2	37	1.48
43608--43636	2	14.5	2	100	0	58	48	0	0	51	1.00
43829--43868	18	2.1	19	86	9	55	60	5	5	30	1.40
44454--44590	60	2.3	59	82	13	176	59	0	0	39	1.02
44443--44632	17	11.1	17	65	26	82	58	0	0	40	1.02
44573--44631	21	2.9	21	75	9	61	59	0	0	40	0.97
47710--47753	11	4.4	11	78	18	51	61	0	0	38	0.96
48197--48243	10	5.1	10	75	19	57	34	0	0	65	0.93
48189--48254	26	2.5	26	95	0	123	43	0	0	56	0.99
48331--48372	21	1.9	22	85	9	59	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48525--48582	18	3.4	18	80	17	63	58	0	3	37	1.15
48549--48710	11	15.5	11	71	16	89	59	0	1	38	1.05
48554--48716	25	6.7	23	69	19	84	60	0	0	38	1.01
48564--48717	59	2.6	59	78	10	154	60	0	0	38	1.02
48589--48718	51	2.5	54	81	10	164	58	0	0	40	1.03
48541--48715	45	3.9	45	74	21	122	60	0	1	38	1.05
48536--48716	18	10.7	18	72	17	97	60	0	1	38	1.04
50536--50566	16	1.9	16	93	0	53	54	0	9	35	1.33
51702--51767	27	2.4	27	79	0	78	19	59	1	19	1.46
51747--51813	15	4.7	15	68	17	52	20	61	5	11	1.51
51750--51811	21	3.0	21	76	9	81	19	62	6	11	1.49
53227--53256	2	15.0	2	100	0	60	50	0	0	50	1.00
53412--53453	17	2.5	17	81	18	52	38	2	0	59	1.10
53445--53499	16	3.4	17	72	25	55	40	0	1	58	1.09
54836--54898	10	5.5	11	75	20	51	36	0	6	57	1.24
54828--54898	35	2.1	34	86	7	99	38	0	5	56	1.23
54949--54995	19	2.4	19	89	3	67	44	0	2	53	1.12
55329--55390	23	2.8	23	80	7	74	59	0	0	40	0.97
55350--55390	5	8.4	5	79	15	50	63	0	0	36	0.95
55718--55772	13	4.2	13	73	19	51	38	0	0	61	0.96
55707--55762	26	2.1	28	90	6	89	37	0	1	60	1.07
59104--59452	174	2.0	174	97	0	653	40	14	13	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65735--65759	13	1.9	13	100	0	50	32	16	16	36	1.90
65714--65775	33	1.9	32	93	3	106	25	14	17	41	1.88
67697--67736	21	2.0	21	85	5	55	35	5	0	60	1.19
67830--67874	20	2.2	20	84	4	54	24	0	4	71	1.05
71180--71268	47	2.0	44	84	6	115	21	6	6	65	1.40
73161--73197	2	18.5	2	100	0	74	48	0	0	51	1.00
74527--74561	14	2.4	15	85	4	54	45	0	5	48	1.26
74790--74823	17	2.1	17	88	5	52	50	0	0	50	1.00
75653--75677	12	2.1	12	100	0	50	68	0	0	32	0.90
75755--75810	23	2.5	22	78	13	62	44	0	0	55	0.99
75805--75875	20	3.6	19	74	22	67	47	0	1	50	1.09
75803--75875	19	3.7	19	71	18	60	46	0	1	52	1.09
76357--76399	23	2.0	21	86	9	59	72	0	0	27	0.85
77978--78021	2	22.0	2	90	0	70	45	0	4	50	1.22
80221--80259	5	7.4	5	91	2	51	43	2	0	53	1.14
80213--80259	16	3.0	16	87	9	62	42	4	0	53	1.20
80289--80323	16	2.2	16	89	0	52	45	0	8	45	1.34
80719--80745	13	2.1	13	100	0	54	22	0	7	70	1.12
81583--81616	10	3.2	10	91	8	50	76	0	0	23	0.79
81650--81735	31	2.8	30	70	8	75	61	1	0	37	1.04
82067--82101	13	2.6	13	90	4	52	0	22	0	77	0.78
82428--82509	18	4.9	17	77	15	82	29	1	2	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82422--82549	34	3.8	33	75	19	108	28	1	1	67	1.08
82422--82508	17	5.3	16	75	19	74	27	1	2	68	1.08
82497--82542	20	2.2	21	85	11	60	26	2	0	71	0.97
82513--82590	28	2.7	28	82	4	75	30	2	2	64	1.21
83615--83639	3	8.3	3	100	0	50	32	0	0	68	0.90
86707--86732	13	2.0	13	100	0	52	92	0	7	0	0.39
89080--89119	21	1.9	21	90	10	64	50	0	2	47	1.14
89807--89917	1	111.0	1	89	0	159	93	0	3	1	0.43

Tables:   1

The End!