genome.fa.s1399.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1399
Parameters: 2 7 7 80 10 50 1000
Length:  214408

Tables:   1   2   

This is table  2  of  2  ( 198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112877--112920	24	1.9	23	86	9	63	63	0	0	36	0.95
112857--112929	24	2.9	23	70	13	56	57	0	0	42	0.98
112984--113025	2	21.0	2	90	0	66	45	0	4	50	1.23
114665--114711	24	1.9	24	83	12	60	61	2	0	36	1.08
118888--118991	24	4.2	24	71	18	88	51	2	4	40	1.38
118993--119033	21	2.0	21	90	0	64	43	12	0	43	1.41
120942--120971	14	2.1	15	93	6	53	63	0	0	36	0.95
127814--127938	52	2.4	52	95	0	223	28	17	18	36	1.94
127814--127958	52	2.8	51	89	4	211	29	17	18	34	1.94
127947--127971	13	1.9	13	100	0	50	36	16	16	32	1.90
128707--128881	50	3.6	49	82	12	214	30	14	22	33	1.93
128702--128838	47	2.8	48	85	5	170	29	13	22	35	1.92
128702--128881	97	1.9	97	85	4	256	30	13	21	34	1.92
133255--133458	50	4.1	50	87	0	291	29	18	19	32	1.96
133255--133438	100	1.8	100	97	0	350	29	20	19	31	1.96
135082--135170	42	2.1	43	85	10	121	35	3	1	59	1.21
136066--136098	2	17.0	2	93	6	59	48	0	0	51	1.00
137290--137485	97	2.0	99	92	2	333	23	9	21	44	1.82
142570--142676	53	2.0	53	94	0	187	46	4	16	31	1.68
143742--143796	21	2.7	20	86	5	74	49	3	12	34	1.59
143800--143838	14	2.7	15	84	8	53	56	5	7	30	1.49
144119--144158	18	2.2	19	86	4	55	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146322--146361	21	1.9	21	89	0	62	37	5	15	42	1.68
146462--146575	35	3.5	35	69	21	95	56	0	1	41	1.16
146520--146575	19	3.1	19	72	12	55	55	0	1	42	1.10
149295--149414	16	7.5	16	83	3	125	40	24	16	19	1.91
149480--149535	21	2.6	22	77	11	62	55	0	1	42	1.10
150480--150517	16	2.4	16	90	0	58	50	26	10	13	1.73
150567--150604	17	2.3	17	81	4	51	47	31	10	10	1.72
156459--156499	3	13.7	3	100	0	82	0	31	0	68	0.90
156569--156621	3	17.7	3	90	0	79	37	1	0	60	1.08
165909--165979	15	4.8	16	82	8	62	25	18	18	38	1.93
165919--166437	27	18.8	28	75	6	299	25	19	23	31	1.98
165919--166437	41	12.5	42	74	5	317	25	19	23	31	1.98
165919--166437	14	37.5	14	71	7	299	25	19	23	31	1.98
172124--172179	28	2.0	28	92	0	94	35	16	19	28	1.93
172614--172773	67	2.5	65	81	7	182	34	16	23	25	1.95
172645--172905	67	3.9	67	77	8	251	34	13	25	26	1.93
175451--175526	14	5.6	14	78	4	66	35	25	13	26	1.92
175451--175530	27	2.9	27	75	1	79	36	25	12	26	1.91
175639--175722	44	1.9	44	90	9	136	40	3	1	54	1.25
175706--175766	21	2.9	21	73	9	54	29	6	3	60	1.38
176322--176624	109	2.8	104	80	6	338	44	3	5	45	1.44
179853--179934	32	2.5	34	76	9	89	60	0	0	39	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179893--179941	17	3.0	17	79	11	57	57	0	0	42	0.99
180971--181020	26	1.9	26	91	0	82	18	2	28	52	1.56
182148--182187	17	2.2	19	86	8	57	10	12	0	77	0.99
182342--182384	17	2.6	17	88	3	61	16	13	0	69	1.19
182546--182582	19	1.9	19	89	10	58	16	27	5	51	1.66
182735--182773	20	2.0	20	89	0	60	35	5	46	12	1.65
182856--182926	27	2.6	27	84	6	90	46	22	7	23	1.76
184808--184853	21	2.1	22	84	4	58	19	30	19	30	1.97
187308--187350	20	2.2	20	86	0	59	34	4	48	11	1.60
187432--187497	27	2.4	28	92	2	107	48	22	6	22	1.72
188156--188225	33	2.1	33	89	0	104	47	0	2	50	1.16
188157--188210	17	3.2	17	71	5	56	42	0	3	53	1.18
190739--190776	17	2.2	17	90	0	58	44	0	2	52	1.14
195474--195562	38	2.4	38	85	9	112	44	1	4	49	1.29
195509--195562	19	2.9	18	84	10	81	50	0	1	48	1.11
195549--195615	27	2.4	27	82	7	82	41	1	1	55	1.18
195842--195876	15	2.2	17	90	10	56	45	0	0	54	0.99
196083--196125	12	3.6	11	84	9	50	86	0	9	4	0.71
196091--196126	13	2.7	13	86	4	54	88	0	8	2	0.59
196545--196588	16	2.6	17	82	10	54	54	0	6	38	1.27
197594--197640	22	2.2	22	84	3	60	57	0	0	42	0.98
202250--202315	11	5.7	11	72	10	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202753--202815	22	2.7	24	85	11	78	60	0	0	39	0.97
203939--203982	23	1.9	23	86	9	63	50	0	0	50	1.00
203939--203987	23	2.0	23	84	7	62	51	0	2	46	1.12
204648--204694	15	3.0	16	84	12	62	53	0	0	46	1.00
205770--205808	2	20.0	2	94	5	71	48	0	0	51	1.00
206808--206862	21	2.5	22	77	16	60	58	1	0	40	1.09
208112--208154	22	2.0	22	90	9	70	60	0	0	39	0.97
212228--212259	2	17.0	2	87	12	50	50	50	0	0	1.00
213111--213211	26	3.9	26	78	7	107	56	3	0	38	1.25
213093--213211	27	4.5	27	76	8	102	58	5	0	35	1.26
213093--213204	54	2.1	55	89	1	172	59	5	0	33	1.26
213245--213278	16	2.1	16	88	5	50	58	2	0	38	1.13

Tables:   1   2

The End!