Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2879421
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 64274 characters in sequence are not A, C, G, or T
File 8 of 17
Found at i:1323849 original size:15 final size:15
Alignment explanation
Indices: 1323823--1323861 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
1323813 TGTATACATA
*
1323823 TATTTT-ATTTTATT
1 TATTTTAATTTTAGT
1323837 TATTTTAATTTTAGT
1 TATTTTAATTTTAGT
1323852 TATTTTAATT
1 TATTTTAATT
1323862 ATTTATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (15 bp):
TATTTTAATTTTAGT
Found at i:1324025 original size:21 final size:21
Alignment explanation
Indices: 1323997--1324054 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
1323987 ATTTCGTAAT
1323997 TAAT-TTTAATCTTATTATCA
1 TAATATTTAATCTTATTATCA
* * *
1324017 TAATATTTAATCTCATCATTA
1 TAATATTTAATCTTATTATCA
* *
1324038 TAATAATTAATTTTATT
1 TAATATTTAATCTTATT
1324055 TTTATTACTA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (21 bp):
TAATATTTAATCTTATTATCA
Found at i:1331241 original size:13 final size:13
Alignment explanation
Indices: 1331223--1331247 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1331213 ATTTTGCTTG
1331223 GTATCGATACATT
1 GTATCGATACATT
1331236 GTATCGATACAT
1 GTATCGATACAT
1331248 AAACTGGTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1331297 original size:24 final size:24
Alignment explanation
Indices: 1331270--1331320 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
1331260 GCTAAATCTC
*
1331270 ATCACTGTTCATAACTGTTCACGT
1 ATCACTATTCATAACTGTTCACGT
* *
1331294 ATCACTATTCATCACTGTTCATGT
1 ATCACTATTCATAACTGTTCACGT
1331318 ATC
1 ATC
1331321 GATACATTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.39
Consensus pattern (24 bp):
ATCACTATTCATAACTGTTCACGT
Found at i:1331333 original size:13 final size:13
Alignment explanation
Indices: 1331315--1331356 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
1331305 TCACTGTTCA
1331315 TGTATCGATACAT
1 TGTATCGATACAT
* * *
1331328 TGTATCGAAATAC
1 TGTATCGATACAT
1331341 TGTATCGATACAT
1 TGTATCGATACAT
1331354 TGT
1 TGT
1331357 GAATAGTATC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1331456 original size:20 final size:20
Alignment explanation
Indices: 1331413--1331456 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1331403 TTCAAATGCA
* *
1331413 TGTATCGATACATTATGAAT
1 TGTATCGATACATTAGGAAG
1331433 TGTATCGATACA-TAGGAACG
1 TGTATCGATACATTAGGAA-G
1331453 TGTA
1 TGTA
1331457 AGTGCGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATTAGGAAG
Found at i:1334688 original size:16 final size:16
Alignment explanation
Indices: 1334662--1334698 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
1334652 AACTTGTTTC
1334662 TTTGC-TTTAGATCAA
1 TTTGCTTTTAGATCAA
1334677 TTTGCTTTTAGATCAA
1 TTTGCTTTTAGATCAA
1334693 TTTGCT
1 TTTGCT
1334699 AGGTATCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTGCTTTTAGATCAA
Found at i:1338877 original size:24 final size:22
Alignment explanation
Indices: 1338834--1338877 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
1338824 AAGAGGCATT
* *
1338834 GTTAGAAAAAATAAAGTAGATG
1 GTTAGAAAAAACAAAATAGATG
1338856 GTTAGATAAAAACAATAATAGA
1 GTTAGA-AAAAACAA-AATAGA
1338878 ATTAAGTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 7 0.39
24 5 0.28
ACGTcount: A:0.57, C:0.02, G:0.18, T:0.23
Consensus pattern (22 bp):
GTTAGAAAAAACAAAATAGATG
Found at i:1341427 original size:20 final size:20
Alignment explanation
Indices: 1341402--1341453 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
1341392 CGAACTCATT
1341402 TGCATAAATATGACATAAAA
1 TGCATAAATATGACATAAAA
1341422 TGCATAAATATGACATAAAA
1 TGCATAAATATGACATAAAA
1341442 TGCATAAATATG
1 TGCATAAATATG
1341454 GGCTGCTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.52, C:0.10, G:0.12, T:0.27
Consensus pattern (20 bp):
TGCATAAATATGACATAAAA
Found at i:1342439 original size:51 final size:52
Alignment explanation
Indices: 1342323--1342459 Score: 222
Period size: 52 Copynumber: 2.7 Consensus size: 52
1342313 TTGCCTGCAC
* *
1342323 GTATTGATACATTGAAGAATGTATCGATACATTTAGGTCAAAAACTCAGAAT
1 GTATCGATACAATGAAGAATGTATCGATACATTTAGGTCAAAAACTCAGAAT
*
1342375 GTATCGATACAATGAAGAATGTATCGATACATTTAGGTCAAAACCT-AGAAT
1 GTATCGATACAATGAAGAATGTATCGATACATTTAGGTCAAAAACTCAGAAT
* *
1342426 GTATCGATACAATGAAAAATATATCGATACATTT
1 GTATCGATACAATGAAGAATGTATCGATACATTT
1342460 TCATTTCAGA
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
51 37 0.46
52 43 0.54
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (52 bp):
GTATCGATACAATGAAGAATGTATCGATACATTTAGGTCAAAAACTCAGAAT
Found at i:1343465 original size:13 final size:13
Alignment explanation
Indices: 1343447--1343471 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1343437 CATAAAGTGT
1343447 TGTATCGATACAA
1 TGTATCGATACAA
1343460 TGTATCGATACA
1 TGTATCGATACA
1343472 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1343469 original size:33 final size:33
Alignment explanation
Indices: 1343427--1343493 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1343417 TTCAACGATT
1343427 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1343460 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1343493 T
1 T
1343494 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1343552 original size:13 final size:13
Alignment explanation
Indices: 1343534--1343558 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1343524 ATCACTTAAA
1343534 TGTATCGATACAT
1 TGTATCGATACAT
1343547 TGTATCGATACA
1 TGTATCGATACA
1343559 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1343623 original size:52 final size:52
Alignment explanation
Indices: 1343567--1343695 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
1343557 CACTGATCTT
*
1343567 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
1343619 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1343671 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1343696 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1353306 original size:26 final size:24
Alignment explanation
Indices: 1353277--1353357 Score: 69
Period size: 21 Copynumber: 3.3 Consensus size: 24
1353267 TTACATTTAA
*
1353277 TTTAATTTAATTTATTTATAAAAATT
1 TTTAATTTAATAT-TTTAT-AAAATT
*
1353303 TTTATGAATTAATATTTTATAAAATT
1 TTTA--ATTTAATATTTTATAAAATT
*
1353329 TATAATTTAA-A-TTT-TAAAATT
1 TTTAATTTAATATTTTATAAAATT
*
1353350 TATAATTT
1 TTTAATTT
1353358 TTTTATTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
21 15 0.31
22 3 0.06
23 1 0.02
24 5 0.10
26 13 0.27
27 5 0.10
28 7 0.14
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (24 bp):
TTTAATTTAATATTTTATAAAATT
Found at i:1354018 original size:20 final size:20
Alignment explanation
Indices: 1353995--1354085 Score: 62
Period size: 20 Copynumber: 4.5 Consensus size: 20
1353985 AAATATTTTT
1353995 ATTAATAAATAATAATTTAA
1 ATTAATAAATAATAATTTAA
*
1354015 ATTAAATAAA-ATTAATTT-A
1 ATT-AATAAATAATAATTTAA
* * * *
1354034 ATTAAAAAATATTTATGTAAA
1 ATTAATAAATAATAAT-TTAA
* *
1354055 ATTTATTAAAT-ATAAATTAA
1 A-TTAATAAATAATAATTTAA
1354075 ATTAATCAAAT
1 ATTAAT-AAAT
1354086 TAAATAAATA
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
18 5 0.09
19 13 0.24
20 19 0.35
21 10 0.19
22 7 0.13
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (20 bp):
ATTAATAAATAATAATTTAA
Found at i:1354021 original size:39 final size:39
Alignment explanation
Indices: 1353967--1354044 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
1353957 TATTATTTTT
* * *
1353967 ATAATTAAATTTAAATAAAAATATTTTTATTAATAAATA
1 ATAATTAAATTTAAATAAAAATAATTTAATTAAAAAATA
*
1354006 ATAATTTAAA-TTAAATAAAATTAATTTAATTAAAAAATA
1 ATAA-TTAAATTTAAATAAAAATAATTTAATTAAAAAATA
1354045 TTTATGTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 29 0.85
40 5 0.15
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (39 bp):
ATAATTAAATTTAAATAAAAATAATTTAATTAAAAAATA
Found at i:1354029 original size:15 final size:15
Alignment explanation
Indices: 1354000--1354096 Score: 60
Period size: 15 Copynumber: 6.5 Consensus size: 15
1353990 TTTTTATTAA
1354000 TAAATAATAATTTAAAT
1 TAAATAA-AA-TTAAAT
*
1354017 TAAATAAAATTAATT
1 TAAATAAAATTAAAT
*
1354032 TAATTAAAA--AATATT
1 TAAATAAAATTAA-A-T
** *
1354047 TATGTAAAATT-TAT
1 TAAATAAAATTAAAT
1354061 TAAATATAAATTAAAT
1 TAAATA-AAATTAAAT
*
1354077 T-AATCAAATTAAA-
1 TAAATAAAATTAAAT
1354090 TAAATAA
1 TAAATAA
1354097 TGTAATCTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 17
0.69 0.12 0.19
Matches are distributed among these distances:
13 3 0.05
14 17 0.27
15 30 0.48
16 5 0.08
17 7 0.11
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (15 bp):
TAAATAAAATTAAAT
Found at i:1354031 original size:14 final size:14
Alignment explanation
Indices: 1353995--1354096 Score: 55
Period size: 14 Copynumber: 6.9 Consensus size: 14
1353985 AAATATTTTT
1353995 ATTAA-TAAATAATA
1 ATTAATTAAATAA-A
1354009 ATTTAAATTAAATAAA
1 A-TT-AATTAAATAAA
*
1354025 ATTAATTTAATTAAAA
1 ATTAA-TTAAAT-AAA
* * **
1354041 AATATTTATGTAAA
1 ATTAATTAAATAAA
*
1354055 ATTTATTAAATATAA
1 ATTAATTAAATA-AA
*
1354070 ATTAAATT-AATCAA
1 ATT-AATTAAATAAA
*
1354084 ATTAAATAAATAA
1 ATTAATTAAATAA
1354097 TGTAATCTTT
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
13 3 0.05
14 22 0.33
15 21 0.32
16 13 0.20
17 7 0.11
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (14 bp):
ATTAATTAAATAAA
Found at i:1354038 original size:19 final size:19
Alignment explanation
Indices: 1353967--1354039 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 19
1353957 TATTATTTTT
*
1353967 ATAATTAAATTTAAATAAAA
1 ATAATTTAA-TTAAATAAAA
* *
1353987 ATATTTTTATT-AATAAATA
1 ATAATTTAATTAAATAAA-A
1354006 ATAATTTAAATTAAATAAAA
1 ATAATTT-AATTAAATAAAA
*
1354026 TTAATTTAATTAAA
1 ATAATTTAATTAAA
1354040 AAATATTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
18 6 0.14
19 16 0.36
20 16 0.36
21 6 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATAATTTAATTAAATAAAA
Found at i:1361122 original size:16 final size:16
Alignment explanation
Indices: 1361101--1361134 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1361091 AATAACACCT
1361101 AAATAACCAAAACTTA
1 AAATAACCAAAACTTA
* *
1361117 AAATAATCTAAACTTA
1 AAATAACCAAAACTTA
1361133 AA
1 AA
1361135 TTAAGTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATAACCAAAACTTA
Found at i:1362697 original size:128 final size:129
Alignment explanation
Indices: 1362484--1362787 Score: 375
Period size: 128 Copynumber: 2.3 Consensus size: 129
1362474 GAGATAATAA
* * * * *
1362484 CGGGGTTGGAGTATCCTCTCGAAAATAATAAGGTTGGAGTATCCCCGATTGTGAAAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAAT-GGGTTGGAGTATCCCCAATTATGAAAAATCAATGA
* *
1362549 TTTAGAAATAAGGCAAGGGTTGAAGTGT-CCTCGATTAT-AGAAAAT-AGATGTTTTAAAAATAA
65 TTTAGAAATAAGGCAAGGGTTGAAGTATCCCT-GATTATGAG-AAATCA-ATATTTTAAAAATAA
*
1362611 AAT
127 AAC
* *
1362614 CGGGATTGGAGTATCCCCGT-GAAAATAATGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-A
1 CGGGGTTGGAGTATCCCC-TCGAAAATAATGGGTTGGAGTATCCCCAATTATGAAAAATCAATGA
** * * *
1362677 TTTAGAAATAAGGCCGGGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGAAAATAAAGC
65 TTTAGAAATAAGGCAAGGGTTGAAGTATCCCTGATTATGAGAAATCAATATTTTAAAAATAAAAC
*
1362742 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCCTCGAAAATAA-TGGGTTGGAGTATCCCC
1362788 GATGAAATAA
Statistics
Matches: 151, Mismatches: 17, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
127 1 0.01
128 74 0.49
129 50 0.33
130 25 0.17
131 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (129 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAATGGGTTGGAGTATCCCCAATTATGAAAAATCAATGAT
TTAGAAATAAGGCAAGGGTTGAAGTATCCCTGATTATGAGAAATCAATATTTTAAAAATAAAAC
Found at i:1362707 original size:50 final size:51
Alignment explanation
Indices: 1362643--1362759 Score: 173
Period size: 50 Copynumber: 2.3 Consensus size: 51
1362633 TGAAAATAAT
*
1362643 GGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAG-AAATAAGGCCG
1 GGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGAAAATAAAGCCG
* ** * *
1362693 GGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGAAAATAAAGCCG
1 GGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGAAAATAAAGCCG
1362744 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
1362760 TCGAAAATAA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 34 0.59
51 24 0.41
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGAAAATAAAGCCG
Found at i:1362816 original size:28 final size:30
Alignment explanation
Indices: 1362742--1362818 Score: 126
Period size: 28 Copynumber: 2.7 Consensus size: 30
1362732 AAAATAAAGC
1362742 CGGGGTTGGAGTATCCCC--TCGAAAATAA
1 CGGGGTTGGAGTATCCCCGATCGAAAATAA
1362770 CGGGGTTGGAGTATCCCCGAT-G-AAATAA
1 CGGGGTTGGAGTATCCCCGATCGAAAATAA
1362798 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
1362819 TGTGAAAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
28 45 0.96
29 1 0.02
30 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (30 bp):
CGGGGTTGGAGTATCCCCGATCGAAAATAA
Found at i:1362915 original size:51 final size:51
Alignment explanation
Indices: 1362798--1362916 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
1362788 GATGAAATAA
*
1362798 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGAAAATAAAAC
** ** * * * * *
1362849 CGAAGTCAGAATATCCCTGATTGTGGAGAATTAGTGTTTTGGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGAAAATAAAAC
1362900 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
1362917 ATCGGGGTTG
Statistics
Matches: 53, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGAAAATAAAAC
Found at i:1363095 original size:78 final size:79
Alignment explanation
Indices: 1362919--1363141 Score: 321
Period size: 78 Copynumber: 2.9 Consensus size: 79
1362909 AGTATCCCAT
* *
1362919 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAATAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTAT
* *
1362984 CTCCTCAGAAATGA
66 CCCCTCAGAAATAA
* * * * *
1362998 CGGGGTTAGAGTATCCCCGATTATGAGAAATTAATATTTTATAAAT-AAACCCGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTAT
1363062 CCCCTC-GAAAATAA
66 CCCCTCAG-AAATAA
1363076 CGGGGTTGGAGTATCCCCG---ATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTAT
1363138 CCCC
66 CCCC
1363142 GATTAAAAAA
Statistics
Matches: 128, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
75 21 0.16
76 21 0.16
77 1 0.01
78 44 0.34
79 41 0.32
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCAGAAATAA
Found at i:1363138 original size:48 final size:50
Alignment explanation
Indices: 1363076--1363194 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 50
1363066 TCGAAAATAA
* *
1363076 CGGGGTTGGAGTATCCCCGA-T-GAAAAATTGATATTTT-AGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTAAAAAAATTGACATTTTGA-AAATAAAAC
* **
1363124 CGGGGTTGGAGTATCCCCGATTAAAAAAAATTGACGTTTTGAAAATGGAAC
1 CGGGGTTGGAGTATCCCCGATT-AAAAAAATTGACATTTTGAAAATAAAAC
*
1363175 CGGGATTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
1363195 AATGAACAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
48 20 0.33
49 1 0.02
51 39 0.64
52 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (50 bp):
CGGGGTTGGAGTATCCCCGATTAAAAAAATTGACATTTTGAAAATAAAAC
Found at i:1367479 original size:52 final size:52
Alignment explanation
Indices: 1367404--1367532 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
1367394 CGAAATATGA
* *
1367404 AAATTTGCCTGCATGTATTGATACATTTAATAGTGTATCGATACATATGGGT
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATATGGGC
* * *
1367456 AAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATATGGGC
1367508 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1367533 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATATGGGC
Found at i:1367543 original size:52 final size:51
Alignment explanation
Indices: 1367404--1367552 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 51
1367394 CGAAATATGA
* *
1367404 AAATTTGCCTGCATGTATTGATACATTTAATAGTGTATCGATACATATGGGT
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATATGGGC
* * *
1367456 AAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATATGGGC
*
1367508 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1367553 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATATGGGC
Found at i:1367559 original size:13 final size:13
Alignment explanation
Indices: 1367541--1367565 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1367531 CAAAGATCAG
1367541 TGTATCGATACAA
1 TGTATCGATACAA
1367554 TGTATCGATACA
1 TGTATCGATACA
1367566 TTTGGGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1367653 original size:13 final size:13
Alignment explanation
Indices: 1367635--1367691 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
1367625 TAAAAACTTA
1367635 TGTATCGATACAT
1 TGTATCGATACAT
*
1367648 TGTATCGACACAACACTT
1 TGTATCG--A-TACA--T
1367666 ATGTATCGATACAT
1 -TGTATCGATACAT
1367680 TGTATCGATACA
1 TGTATCGATACA
1367692 ACATTTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 19 0.53
14 1 0.03
15 1 0.03
16 6 0.17
17 1 0.03
18 1 0.03
19 7 0.19
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1367671 original size:32 final size:32
Alignment explanation
Indices: 1367609--1367710 Score: 161
Period size: 32 Copynumber: 3.2 Consensus size: 32
1367599 AGCTTCGTAG
*
1367609 CGATACATTGTATCGATA-AAAACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
1367640 CGATACATTGTATCGACACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
* *
1367672 CGATACATTGTATCGATACAACATTTTTGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
1367704 CGATACA
1 CGATACA
1367711 AATCGTTGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 17 0.26
32 48 0.74
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:1368893 original size:92 final size:92
Alignment explanation
Indices: 1368725--1381731 Score: 15631
Period size: 92 Copynumber: 141.5 Consensus size: 92
1368715 GGCGTCAACA
* * * *
1368725 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--TGCCAA-AGTGCTGATTCAAGACT
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA-TGCTGATTCAAGGCC
* * ** * *
1368783 AGCGACATTGGTCTTAAAGATGCCGATG
65 AGCGATATTGGACTTGGAGGTGCCAATG
* *
1368811 TGCTGATTCAAGGCCAGCTACATTGGACTAAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
** *
1368876 GCGATATTGGA-TCTAAAGGTGCCGATG
66 GCGATATTGGACT-TGGAGGTGCCAATG
*
1368903 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAGGTGTCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1368967 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
1368994 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATTAAAAAAGGTGCCAATATGCTGATTCAAG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-T---AAAGGTGCCAATATGCTGATTCAAG
1369059 GCCAGCGATATTGGACTTGGAGGTGCCAATG
62 GCCAGCGATATTGGACTTGGAGGTGCCAATG
1369090 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1369155 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1369182 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAATAAAGGTGCCAGTATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1369247 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
1369274 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1369339 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1369366 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAGTATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1369431 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1369458 TGCTGATTCAAGGCCAGCTACATTGGACTTTAAGATAAATGTGCCAATATGCTGATTCAAGGCCG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1369523 GCTACATTGGACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
*** ** * *
1369556 TGCTGATTCAAGGCCAGCGGTATTGGAC-T---G--GGAGGTGCCGATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1369615 GCTACATTGGACTTAATGATTAAAAAAGGTGCCAATA
66 GCGATATTGGAC-T--TG-------GAGGTGCCAATG
* * * *
1369652 TGCTGATTCAAGGCCAGCGATATTGGA-TT-----TAAAGGTGCCGATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1369711 GCTACATTGGACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * * *
1369744 TGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTGAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1369803 GCTACATTGGACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * *
1369836 TGGTGATTCTAA-GCCAGCTACATTGGATTTAAAGATGAAGGTGCCAATATGCCGATTCAAGGCC
1 TGCTGATTC-AAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
* *
1369900 AGCGGTATTGGACTTGGAGGTGCCGATG
65 AGCGATATTGGACTTGGAGGTGCCAATG
* * *
1369928 TGCTGAATCAAGGTCAGCTACGTTGGACTTAAAGATTAAAAAAGGTGCCAATATGCTGATTCAAG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-T---AAAGGTGCCAATATGCTGATTCAAG
1369993 GCCAGCGATATTGGACTTGGAGGTGCCAATG
62 GCCAGCGATATTGGACTTGGAGGTGCCAATG
1370024 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* ** *
1370089 GCGATATTGGATTTAAAGGTGCCGATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1370116 TGCTGATTCCAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTTCTAA-GC
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGA-TTC-AAGGC
1370180 CAGCGATATTGGACTTGGAGGTGCCAATG
64 CAGCGATATTGGACTTGGAGGTGCCAATG
*
1370209 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* ** * *
1370274 GCGATATTGGATTTAAAGGTACCGATG
66 GCGATATTGGACTTGGAGGTGCCAATG
1370301 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1370366 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1370393 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAAGATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1370452 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1370479 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1370544 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * *
1370571 TGCTGATTCAAAACCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1370636 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1370663 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1370728 ACGATATTGGACTTGGAGGTACCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1370755 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1370820 GCGATATTGGACTTGGAGGTGGCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1370847 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1370912 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1370939 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1371004 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1371031 TGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1371096 G-TAGTATTGGACTTGGAGGTGCCAATG
66 GCGA-TATTGGACTTGGAGGTGCCAATG
*
1371123 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1371188 GCGGTATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1371215 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1371274 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1371301 TGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1371366 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1371393 TGTTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * * *
1371458 GCTACATTGGATTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * * * **
1371491 TGCTGATTAAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAAACCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1371550 GCTATATTGTACTTAATGATAAAGGTGCCAATA
66 GCGATATTGGAC-T--TG---GAGGTGCCAATG
* * * * *
1371583 TGCTGATTCAAGGCTAGCAATATTGGACTT---G---GAGGTGCCAATCTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * * *
1371642 GCTACAATGGACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * * *
1371675 TGCTGATTCAAGGCCAACGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1371734 GCTACATTGGACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * *
1371767 TGCTGATTCAAGGCCAGC-AGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCC
1 TGCTGATTCAAGGCCAGCTA-CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
* * * *
1371825 AGCTACATTGGACTTAAAGATAAAGGTGCCAATA
65 AGCGATATTGGACTT---G---GAGGTGCCAATG
* *** * *
1371859 TGCTGATTCAAGGACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * ** *
1371918 GCTACATTGGACTTAAAGGTGCCAATA
66 GCGATATTGGACTTGGAGGTGCCAATG
* *** * * *
1371945 TGCTGGTTCAAGGCCAGCGGTATTAGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * * *
1372004 GCTACATTGCACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * *
1372037 TGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * *
1372096 GCTACATTGGACTTAAAGATAAAGGTGCCAATG
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* *
1372129 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1372194 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1372221 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1372286 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1372313 TGCTGATTCAAGGCCAGCTACAATGGGCTTAAAGAGAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
**
1372378 ATGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
1372405 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1372470 GC-AGTATTGGACGTGGAGGTGCCAATG
66 GCGA-TATTGGACTTGGAGGTGCCAATG
* *
1372497 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATACGCTGATTCAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1372562 GCGGTATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1372589 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1372648 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1372675 TGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1372740 GTGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1372767 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1372832 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1372859 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1372924 GCAATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
1372951 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* ** *
1373016 GCGATATTGGATTTAAAGGTGCCGATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1373043 TGCTGATTCCAGGCCAGCTACATTGGACTTAAAGATAAAGGTG-CAATATGCTGATTTCTAGGCC
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGA-TTCAAGGCC
1373107 AGCGATATTGGACTTGGAGGTGCCAATG
65 AGCGATATTGGACTTGGAGGTGCCAATG
*
1373135 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* ** * *
1373200 GCGATATTGGATTTAAAGGTACCGATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1373227 TGCTGATTCAAGGCCAGCTACATTGGACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1373292 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1373319 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1373384 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * *
1373411 TGCTGATTCAAAACCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1373476 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1373503 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1373568 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1373595 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1373660 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1373687 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1373752 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1373779 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAAGATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1373838 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1373865 TGCTGATTCAAGGCCAGCTACTTTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1373930 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * *
1373957 TGCTGATTCAAAACCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1374022 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1374049 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1374108 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1374135 TGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAATGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1374200 GTGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1374227 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* ** * *
1374292 GCGATATTGGATTTAAAGGTACCGATG
66 GCGATATTGGACTTGGAGGTGCCAATG
1374319 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1374384 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1374411 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAAGATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1374470 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1374497 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1374562 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * *
1374589 TGCTGATTCAAAACCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1374654 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1374681 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1374746 ACGATATTGGACTTGGAGGTACCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1374773 TGCTGACTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1374838 GCGATATTGGACTTGGAGGTGGCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1374865 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1374930 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1374957 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1375022 ACGATATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1375049 TGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1375114 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1375141 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1375206 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1375233 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1375298 ACGATATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1375325 TGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1375390 G-TAGTATTGGACTTGGAGGTGCCAATG
66 GCGA-TATTGGACTTGGAGGTGCCAATG
*
1375417 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1375482 GCGGTATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1375509 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1375568 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1375595 TGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1375660 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1375687 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * * *
1375752 GCTACATTGGATTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * * * * **
1375785 TGCTGATTAAAGGCCAGCGATACTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAAACCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1375844 GCTATATTGTACTTAATGATAAAGGTGCCAATA
66 GCGATATTGGAC-T--TG---GAGGTGCCAATG
* * * * *
1375877 TGCTGATTCAAGGCTAGCAATATTGGACTT---G---GAGGTGCCAATCTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * * *
1375936 GCTACAATGGACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * * *
1375969 TGCTGATTCAAGGCCAACGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
1376028 GCTACATTGGACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * *
1376061 TGCTGATTCAAGGCCAGC-AGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCC
1 TGCTGATTCAAGGCCAGCTA-CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
* * * *
1376119 AGCTACATTGGACTTAAAGATAAAGGTGCCAATA
65 AGCGATATTGGACTT---G---GAGGTGCCAATG
* *** * *
1376153 TGCTGATTCAAGGACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * ** *
1376212 GCTACATTGGACTTAAAGGTGCCAATA
66 GCGATATTGGACTTGGAGGTGCCAATG
* *** * * *
1376239 TGCTGGTTCAAGGCCAGCGGTATTAGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * * *
1376298 GCTACATTGCACTTAAAGATAAAGGTGCCAATA
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* * * *
1376331 TGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * *
1376390 GCTACATTGGACTTAAAGATAAAGGTGCCAATG
66 GCGATATTGGACTT---G---GAGGTGCCAATG
* *
1376423 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1376488 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1376515 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1376580 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1376607 TGCTGATTCAAGGCCAGCTACAATGGGCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1376672 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
1376699 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1376764 GC-AGTATTGGACGTGGAGGTGCCAATG
66 GCGA-TATTGGACTTGGAGGTGCCAATG
* *
1376791 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATACGCTGATTCAAGGACA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1376856 GCGGTATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1376883 TGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1376942 GCGGTATTAGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1376969 TGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1377034 GTGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1377061 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1377126 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * *
1377153 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1377218 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1377245 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1377310 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1377337 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1377402 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1377429 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1377494 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1377521 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1377586 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1377613 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1377678 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1377705 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1377770 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1377797 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATT-AAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1377861 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1377888 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTG-CAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1377952 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1377979 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1378044 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1378071 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1378136 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1378163 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1378228 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1378255 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1378320 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1378347 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1378412 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1378439 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1378504 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1378531 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1378596 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1378623 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1378688 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * * *
1378715 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1378780 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1378807 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1378872 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1378899 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1378964 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * * * *
1378991 TGCTGATTCAA-ACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1379055 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1379082 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1379147 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* * *
1379174 TGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1379239 GCGATATTGGACTTGGAGGGTGCCAATG
66 GCGATATTGGACTTGGA-GGTGCCAATG
** * * * * *
1379267 TGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGGGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1379332 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1379359 TGCTGATTCAAGGCCAGCTACAATGGACTT-AAGATAAAGGTGCCAATATGCTGATTC-AGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
*
1379422 ACGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
* *
1379449 TGCTGATTCAAGGCCAGCTACATTGGACGTTTAAAGATAAAGGTGCCACTATGCTGGATTTTTAA
1 TGCTGATTCAAGGCCAGCTACATTGGAC--TTAAAGATAAAGGTGCCAATATGCT-GA---TTCA
*
1379514 AGGACAGCAGAGTATTGGACTT-GAGGTGCCAATG
60 AGGCCAGC-GA-TATTGGACTTGGAGGTGCCAATG
* ** * *
1379548 TGC-GATTAAAAACCAGCTACTATTGGACTTAATGATAAAGGTGCC-ATATGCTGATTCAAGGCT
1 TGCTGATTCAAGGCCAGCTAC-ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
* * *
1379611 AGCAATATT-GCCTTGGAGGTGGCAATG
65 AGCGATATTGGACTTGGAGGTGCCAATG
*
1379638 TGCTGATTC-AGG-CAGCTACATTGGCACTACTTACAGATAAAGGCTAGGTTGCCAATATGCTGA
1 TGCTGATTCAAGGCCAGCTACATTGG----ACTTAAAGAT-AA----AGG-TGCCAATATGCTGA
* * ** * *
1379701 TTCACAAGCCAGCGATATTGGATTTAAAGATGCC-GTG
56 TTCA-AGGCCAGCGATATTGGACTTGGAGGTGCCAATG
* * *
1379738 TGCTGATTCCAGGCCAAGCTTACATTGGGATTTTAAAGATAAAGGTG-CAATATGCTGATTTCTA
1 TGCTGATTCAAGGCC-AGC-TACATT-GGA-CTTAAAGATAAAGGTGCCAATATGCTGA-TTCAA
1379802 GGCCAG-GATATTGGAC-TGGAGGGTGCCAATG
61 GGCCAGCGATATTGGACTTGGA-GGTGCCAATG
* * *
1379833 TGCTGATTCAAGGCCAGGCTACATTGGACTTAGAGA-AAAGGTGCCAATAT-ATGATTCAAGGAC
1 TGCTGATTCAAGGCCA-GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
* * ** * *
1379896 AGCGATATTGTAATTTCAAGGTACCGATG
65 AGCGATATTG-GACTTGGAGGTGCCAATG
* * *
1379925 TGCTGATTCAAGGCCCG-AACATTGGACGTTAAATGAATAAAGGGGTTGCC-ATATGCCTGAGTC
1 TGCTGATTCAAGGCCAGCTACATTGGAC-TTAAA-G-ATAAA--GG-TGCCAATATG-CTGATTC
*
1379988 CAGGCCAGC-ATATTGGACTT-GAGGTGGCCAATG
59 AAGGCCAGCGATATTGGACTTGGAGGT-GCCAATG
** * * * * * * *
1380021 TGCTGCGTCAAGGCCAGCTACCTTGGATTTCACGCTAGAAGGTG-CAATCTGCTGATTAAAGGCC
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCC
* *
1380085 AGCGCTATT-GACGTTTG-GGTGCCAATG
65 AGCGATATTGGAC-TTGGAGGTGCCAATG
** * *
1380112 TGCTGATTCAAAACCAGCT-TATTGGTACTTAAAGATTAAAGGGGTGGCCAATATATCTGATTCA
1 TGCTGATTCAAGGCCAGCTACATTGG-ACTTAAAGA-TAAA--GGT-GCCAATAT-GCTGATTCA
* * *
1380176 AGG-CAGCAATATTTGG-CTTGGAGGTGCCCATC
60 AGGCCAGCGATA-TTGGACTTGGAGGTGCCAATG
* * * *
1380208 TGCTGA-TGAAGGCCAGCTACAAT-G-CTTAAAGATAAAGTTGCC-AGATGCCTGATTCAAAGGC
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG-CTGATTC-AAGGC
* * *
1380269 CACCGATATTAGGACGTGAGAGGTGCCAAGG
64 CAGCGATATT-GGACTTG-GAGGTGCCAATG
* * * * *
1380300 TGGCTGATTCAA-GCCAGTTACAGTGGATTTAAAAAGATAAAGGTGCCAATAGGCTGATTTAAGG
1 T-GCTGATTCAAGGCCAGCTACATTGGACTT--AAAGATAAAGGTGCCAATATGCTGATTCAAGG
1380364 -CAGCGATATTGGACTTGGAGGTGCCAATG
63 CCAGCGATATTGGACTTGGAGGTGCCAATG
* * * ** *
1380393 TGTCTGATTCACA--CCAGCTATATTGTACGT-CTGAT-AAGGTGCCAAT-GGCTAGA-TCAAGG
1 TG-CTGATTCA-AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT-GATTCAA-G
* * *
1380452 GCTAGCAATATTGGACTTTGTGGAGGTGCCAATC
62 GCCAGCGATATTGGAC--T-TGGAGGTGCCAATG
* *
1380486 TGCTGAATATC-AGGCCAGTCTACAATGCGACTTAACG-T-AAGAGT-CCAAATAT-CTGATTCA
1 TGCTG-AT-TCAAGGCCAG-CTACATTG-GACTTAAAGATAAAG-GTGCC-AATATGCTG----A
* * *
1380546 TTCAAGGGCAACGAT-GTGG-CTTGGAGGTG-CAATGG
56 TTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAAT-G
* *
1380581 TGC-GATTTC-AGGCCAGCTAC-TT-G-CGTAAAGATAAAGGTGCCAA-ATGCGGATTCAAGGCC
1 TGCTGA-TTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
*
1380640 -GC-ATATATGGACTTTGGAGGTGCCATAGG
65 AGCGATAT-TGGAC-TTGGAGGTGCCA-ATG
* * *
1380669 TGCTGAATTC-AGGCAAGCTAAATTGGACTTAAA-ATAAAGGTGGCCAATATGCTGATTC-AGGA
1 TGCTG-ATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT-GCCAATATGCTGATTCAAGGC
*** * * *
1380731 CAAAAAAATCAAGGACAGCGGTATTGGACTTGAGGGCCAATG
64 CAGCGATAT--TGG--A-C----TTGGA---G-GTGCCAATG
* * *
1380773 TGCTG-TTCAAGGCCAGCTACATTGG------A-ATTAA-GTGCCAATAGGCTGGTTCAA-G-CA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1380827 GGCGGTATATAGACTTGGAGGATGCCAATG
66 -GCGATAT-TGGACTTGGAGG-TGCCAATG
* * *
1380857 ATGCTTGATTTCAAGGCCAGCTACAGTGCACATAAAGAT-AAGGTG-CAATATGC-GAGTTCAAG
1 -TGC-TGA-TTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGA-TTCAAG
* * * *
1380919 GCCAGTGGATAGTGGAC-TGGA-GTGACAAGG
62 GCCAG-CGATATTGGACTTGGAGGTGCCAATG
* *
1380949 GGCTGATTCAAGGCC-GCTACA-TGGA-TTTAAGATAAAGGTGCC-A-ATGCTTGATTAACAGAA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC-TGATT--C---A
**
1381009 AGTACAGCGATATTGG-CTTGGAGGTGCCAATG
60 AGGCCAGCGATATTGGACTTGGAGGTGCCAATG
* * * *
1381041 TGGCTGATTCAA-ACCAGCTAAATATGTTGTACGTAATGATAAAGGTGCCAATATGCT-ATTCAA
1 T-GCTGATTCAAGGCCAGCTACAT-TG--G-ACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
* * *
1381104 GGCTAGCAATATTGGACTTGGACGGTG-CAAGG
61 GGCCAGCGATATTGGACTTGGA-GGTGCCAATG
* *
1381136 TGTCTGATTCAAGGCCAGCTACATGGGACTTAAAGATAAAGGTGCCCAATATGCTGATTTCAAAA
1 TG-CTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTG-CCAATATGCTGA-TTC-AAG
** *
1381201 GCCAGCGA-ATTGGGA-TTAAAGGTGCCGATG
62 GCCAGCGATATT-GGACTTGGAGGTGCCAATG
* * * * * * *
1381231 TGCTGTTTC--CGCCAGCTACATTGTAC-TAAATA-AAATAGTGGGCAATATGCTGATTTCTA-G
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAA-GGT-GCCAATATGCTGA-TTCAAGG
*
1381291 CCA-CGATATTGGACTTGGCGGTGCCAATG
63 CCAGCGATATTGGACTTGGAGGTGCCAATG
* *
1381320 -GCTGA-TC-AGGCCAGCTACATTGGAC-T-AAGA-AAAGGTGGCCAAGATGCTGA-TCAAGGAC
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT-GCCAATATGCTGATTCAAGGCC
* ** * *
1381378 AGCGAGATTGGA-TTCATAAGGATACCGATG
65 AGCGATATTGGACTT--GGAGG-TGCCAATG
* *
1381408 TGGCCTGATTCAAGTCCAGCTACAATTGGAACTTAATGATAAAGGTGCCAATATGCTGATTCAAG
1 T-G-CTGATTCAAGGCCAGCTAC-ATTGG-ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
1381473 GCCAGCGATATTGGACTTGGAGGTGCCAATG
62 GCCAGCGATATTGGACTTGGAGGTGCCAATG
* *
1381504 TGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1381569 GCGATATTGGACTTGGAGGTGCCAATG
66 GCGATATTGGACTTGGAGGTGCCAATG
** * * *
1381596 TGCTGATTCAAAACCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
1381661 GCAATATTGGACTTGGAGGTGCCAATC
66 GCGATATTGGACTTGGAGGTGCCAATG
*
1381688 TGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGC
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1381732 TACAATGGAC
Statistics
Matches: 11449, Mismatches: 1101, Indels: 736
0.86 0.08 0.06
Matches are distributed among these distances:
83 3 0.00
84 12 0.00
85 20 0.00
86 865 0.08
87 44 0.00
88 94 0.01
89 87 0.01
90 153 0.01
91 484 0.04
92 8083 0.71
93 356 0.03
94 129 0.01
95 184 0.02
96 380 0.03
97 97 0.01
98 282 0.02
99 59 0.01
100 41 0.00
101 27 0.00
102 11 0.00
103 17 0.00
104 14 0.00
105 7 0.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (92 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
GCGATATTGGACTTGGAGGTGCCAATG
Found at i:1369397 original size:276 final size:276
Alignment explanation
Indices: 1368443--1387069 Score: 15776
Period size: 276 Copynumber: 66.7 Consensus size: 276
1368433 GGCTAGCGAT
* * *
1368443 ATTGGACTTAAAGATAAAGGTACCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G
** ** * * * * * *
1368508 ACAAAGGCACCAACATGCTGATTCAAGGCCAGCAATATTGGACCTAAAGGTGAAGGTGCCAATGT
61 ----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
* * * * * * * *
1368573 GCTGATTGAAGGCCAACGACATTGGACTTACAAATGACAAAGGCGCCAATATGTTAATTCAAGGC
122 GCTGATTCAAGGCCAGCGATATTGGAC-T-----TG---GAGGTGCCAATGTGCTGATTCAAGGC
* * * * * * * *
1368638 CAGCGATACTGGACTTAAAGATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACTT
178 CAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * ** * *
1368703 AAAGATGATAAAGGCGTCAACATGCTGATTCAAGGCCAGCGAT
243 ---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * * ** *
1368746 ATTGGACTTAAAG----A--TGCCAA-AGTGCTGATTCAAGACTAGCGACATTGGTCTTAAAGAT
1 ATTGGACTTAAAGATAAAGGTGCCAATA-TGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
* *
1368804 GCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTAAAAGATAAAGGTGCCAATATGCTGATTC
65 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* ** *
1368869 AAGGCTAGCGATATTGGA-TCTAAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTT
130 AAGGCCAGCGATATTGGACT-TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
1368933 AAAGAT-AAGGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGC
194 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGC
1368997 TGATTCAAGGCCAGCTAC
259 TGATTCAAGGCCAGCTAC
1369015 ATTGGACTTAAAGATTAAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGA
1 ATTGGACTTAAAGA-T---AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGA
1369080 GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGA
62 GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGA
* *
1369145 TTCAAGGCCAGCGGTATTAGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
127 TTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
* *
1369210 TTAAAAATAAAGGTGCCAGTATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGT
192 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGT
1369275 GCTGATTCAAGGCCAGCTAC
257 GCTGATTCAAGGCCAGCTAC
* *
1369295 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGGTATTAGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
*
1369360 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAGTATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
*
1369425 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTTA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * * * *
1369490 AGATAAATGTGCCAATATGCTGATTCAAGGCCGGCTACATTGGACTTAAAGATAAAGGTGCCAAT
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAAT
* ***
1369555 ATGCTGATTCAAGGCCAGCGGT
255 GTGCTGATTCAAGGCCAGCTAC
** * * * *
1369577 ATTGGAC-T---G--GGAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAATGATT
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG---
* * * * * *
1369636 AAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA-TT-----TAAAGGTGCCGATG
60 ----GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
* * * *
1369695 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
121 TGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCA
* * * * * * *
1369760 GCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTGAAGGCCAGCTACATTGGACTTAA
180 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--
* * *
1369819 AGATAAAGGTGCCAATATGGTGATTCTAA-GCCAGCTAC
243 -G---GAGGTGCCAATGTGCTGATTC-AAGGCCAGCTAC
* * * *
1369857 ATTGGATTTAAAGATGAAGGTGCCAATATGCCGATTCAAGGCCAGCGGTATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* * * *
1369922 CCGATGTGCTGAATCAAGGTCAGCTACGTTGGACTTAAAGATTAAAAAAGGTGCCAATATGCTGA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-T---AAAGGTGCCAATATGCTGA
1369987 TTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
127 TTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
* ** *
1370052 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGATTTAAAGGTGCCGATGT
192 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGT
*
1370117 GCTGATTCCAGGCCAGCTAC
257 GCTGATTCAAGGCCAGCTAC
1370137 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTTCTAA-GCCAGCGATATTGGACTTGGAGG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGA-TTC-AAGGCCAGCGATATTGGACTTGGAGG
1370201 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
64 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
* * ** * *
1370266 CAAGGACAGCGATATTGGATTTAAAGGTACCGATGTGCTGATTCAAGGCCAGCTACATTGGACTT
129 CAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1370331 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGC
194 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGC
1370396 TGATTCAAGGCCAGCTAC
259 TGATTCAAGGCCAGCTAC
* * * *
1370414 ATTGGAC-T-----TAAAGGTGCCAAGATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1370473 CCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
** * *
1370538 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * *
1370603 AGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1370668 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* * *
1370684 AATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1370749 CCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* ** * *
1370814 AGGCCAGCGATATTGGACTTGGAGGTGGCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * * *
1370879 TGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1370944 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* *
1370960 AATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
*
1371025 CCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
*
1371090 AGGCCAG-TAGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
131 AGGCCAGCGA-TATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* *
1371154 AAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTGGAGGTGCCAATGTGCT
195 AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCT
1371219 GATTCAAGGCCAGCTAC
260 GATTCAAGGCCAGCTAC
* * *
1371236 ATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
*
1371295 CCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
*
1371360 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGTTGATTCAAGGCCAGCTACATTGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * * * *
1371425 AGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAAT
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAAT
* * * *
1371490 ATGCTGATTAAAGGCCAGCGAT
255 GTGCTGATTCAAGGCCAGCTAC
* * ** * *
1371512 ATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG---
* * * * * * *
1371571 AAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTT---G---GAGGTGCCAATCTGCT
60 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
* * * * * * *
1371630 GATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGA
125 GATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
* * * * *
1371695 TATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
184 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--
* * *
1371754 AAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGT
244 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-C
* * * *
1371788 ATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---
* * * *** * *
1371847 AAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCT
60 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
* * ** * * *** *
1371906 GATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAG
125 GATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
* * * * * *
1371971 ACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGT
190 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGT
* * *
1372030 GCCAATATGCTGATTCAAGGCCAGCGAT
249 GCCAATGTGCTGATTCAAGGCCAGCTAC
* * * *
1372058 ATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---
* *
1372117 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCT
60 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
* ** * *
1372182 GATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGT
125 GATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
* * *
1372247 ACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAAT
190 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAAT
*
1372312 CTGCTGATTCAAGGCCAGCTAC
255 GTGCTGATTCAAGGCCAGCTAC
* * * **
1372334 AATGGGCTTAAAGAGAAAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
1372399 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
*
1372464 AGGCCAGC-AGTATTGGACGTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
131 AGGCCAGCGA-TATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* * *
1372528 AAGATAAAGGTGCCAATACGCTGATTCAAGGACAGCGGTATTGGACTTGGAGGTGCCAATGTGCT
195 AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCT
1372593 GATTCAAGGCCAGCTAC
260 GATTCAAGGCCAGCTAC
* * *
1372610 ATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
*
1372669 CCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* *
1372734 AGGCCAGTGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* *
1372799 AGATAAAGGTGCCAATATGCTGATTAAAGGACAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
** *
1372864 ATTCAAAACCAGCTAT
261 ATTCAAGGCCAGCTAC
* * * *
1372880 ATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
1372945 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* ** * *
1373010 AGGCCAGCGATATTGGATTTAAAGGTGCCGATGTGCTGATTCCAGGCCAGCTACATTGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1373075 AGATAAAGGTG-CAATATGCTGATTTCTAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCT
196 AGATAAAGGTGCCAATATGCTGA-TTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCT
1373139 GATTCAAGGCCAGCTAC
260 GATTCAAGGCCAGCTAC
* * ** *
1373156 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGATATTGGATTTAAAGGTA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1373221 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
*
1373286 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1373351 AGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
** *
1373416 ATTCAAAACCAGCTAT
261 ATTCAAGGCCAGCTAC
* * *
1373432 ATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1373497 CCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * *
1373562 AGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGTTACATTGGATTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1373627 AGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
** *
1373692 ATTCAAAACCAGCTAT
261 ATTCAAGGCCAGCTAC
* * * *
1373708 ATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* * *
1373773 CCAATCTGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAAGATGCTGGTTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1373832 AGGCCAGCGGTATTAGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACTTTGGATTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1373897 AGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
** *
1373962 ATTCAAAACCAGCTAT
261 ATTCAAGGCCAGCTAC
* * *
1373978 ATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1374043 CCAATCTGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * *
1374102 AGGCCAGCGGTATTAGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* *
1374167 AGATAAATGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1374232 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* * * * ** *
1374248 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGACAGCGATATTGGATTTAAAGGTA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
*
1374313 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1374378 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T--
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * * *
1374440 ---TAAAGGTGCCAAGATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1374502 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* *
1374518 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
** * *
1374583 CCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1374648 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* *
1374713 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTACCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1374778 ACTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* *
1374794 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* ** * * *
1374859 GCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1374924 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* *
1374989 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTAGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1375054 ATTCAAGGCCAACTAC
261 ATTCAAGGCCAGCTAC
*
1375070 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
** * * *
1375135 CCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1375200 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* *
1375265 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTAGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1375330 ATTCAAGGCCAACTAC
261 ATTCAAGGCCAGCTAC
*
1375346 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAG-TAGTATTGGACTTGGAGGT
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGGAGGT
1375410 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
65 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* *
1375475 AAGGACAGCGGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-
130 AAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* * *
1375538 ----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTGCCAATGTGCT
195 AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCT
1375599 GATTCAAGGCCAGCTAC
260 GATTCAAGGCCAGCTAC
* *
1375616 ATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
*
1375681 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * * * * * * *
1375746 AGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATACTGG
131 AGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
* * ** * * *
1375811 ACTT---G---GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGT
190 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG---GAGGT
* * * *
1375870 GCCAATATGCTGATTCAAGGCTAGCAAT
249 GCCAATGTGCTGATTCAAGGCCAGCTAC
* * * * *
1375898 ATTGGACTT---G---GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---
* * * * * * *
1375957 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT---G---GAGGTGCCAATGTGCT
60 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
* * * *
1376016 GATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-A
125 GATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
* * * * *
1376080 GTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
184 -CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-
* * * ***
1376139 TAAAGGTGCCAATATGCTGATTCAAGGACAGCGGT
244 --GAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * * **
1376174 ATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* * *** * * *
1376233 CCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTT---G---GAGGTGCCAATGTGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * * * * *
1376292 AGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
131 AGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
* * * * *
1376357 ACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
190 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGT
1376416 GCCAATGTGCTGATTCAAGGCCAGCTAC
249 GCCAATGTGCTGATTCAAGGCCAGCTAC
* *
1376444 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
** * * *
1376509 CCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * * *
1376574 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGGCTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1376639 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1376704 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
*
1376720 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACGTGGAGGT
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGGAGGT
*
1376784 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATACGCTGATTC
65 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* *
1376849 AAGGACAGCGGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-
130 AAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
* * *
1376912 ----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTGCCAATGTGCT
195 AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCT
1376973 GATTCAAGGCCAGCTAC
260 GATTCAAGGCCAGCTAC
* *
1376990 ATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1377055 CCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
** * *
1377120 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * *
1377185 TGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTGGAGGTGCCAATCTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1377250 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* *
1377266 AATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* * *
1377331 CCAATGTGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
** * *
1377396 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * * *
1377461 TGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1377526 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* *
1377542 AATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1377607 CCAATGTGCTGATTCAAGGCCAGTTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1377672 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1377737 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1377802 ATTCAAGGCCAGTTAC
261 ATTCAAGGCCAGCTAC
*
1377818 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATT-AAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
** * * *
1377882 CCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTG-CAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1377946 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1378011 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1378076 ATTCAAGGCCAGTTAC
261 ATTCAAGGCCAGCTAC
* *
1378092 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
** * * *
1378157 CCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1378222 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1378287 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1378352 ATTCAAGGCCAGTTAC
261 ATTCAAGGCCAGCTAC
* *
1378368 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
** * * *
1378433 CCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1378498 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1378563 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1378628 ATTCAAGGCCAGTTAC
261 ATTCAAGGCCAGCTAC
* *
1378644 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
** * * *
1378709 CCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1378774 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1378839 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1378904 ATTCAAGGCCAGTTAC
261 ATTCAAGGCCAGCTAC
* *
1378920 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* * * *
1378985 CCAATGTGCTGATTCAA-ACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCA
66 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * * *
1379049 AGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAA
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1379114 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
*
1379179 ATTCAAGGCCAGTTAC
261 ATTCAAGGCCAGCTAC
* *
1379195 ATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGGT
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGA-GGT
** * * * *
1379260 GCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGGGCCAATATGCTGATTC
65 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* * * *
1379325 AAGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTT-
130 AAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
*
1379389 AAGATAAAGGTGCCAATATGCTGATTC-AGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCT
195 AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCT
1379453 GATTCAAGGCCAGCTAC
260 GATTCAAGGCCAGCTAC
* * *
1379470 ATTGGACGTTTAAAGATAAAGGTGCCACTATGCTGGATTTTTAAAGGACAGCAGAGTATTGGACT
1 ATTGGAC--TTAAAGATAAAGGTGCCAATATGCT-GA---TTCAAGGCCAGC-GA-TATTGGACT
* ** *
1379535 T-GAGGTGCCAATGTGC-GATTAAAAACCAGCTACTATTGGACTTAATGATAAAGGTGCC-ATAT
58 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC-ATTGGACTTAAAGATAAAGGTGCCAATAT
* * * *
1379597 GCTGATTCAAGGCTAGCAATATT-GCCTTGGAGGTGGCAATGTGCTGATTC-AGG-CAGCTACAT
122 GCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
* * *
1379659 TGGCACTACTTACAGATAAAGGCTAGGTTGCCAATATGCTGATTCACAAGCCAGCGATATTGGAT
187 TGG----ACTTAAAGAT-AA----AGG-TGCCAATATGCTGATTCA-AGGCCAGCGATATTGGAC
** * * *
1379724 TTAAAGATGCC-GTGTGCTGATTCCAGGCCAAGCTTAC
241 TTGGAGGTGCCAATGTGCTGATTCAAGGCC-AGC-TAC
* *
1379761 ATTGGGATTTTAAAGATAAAGGTG-CAATATGCTGATTTCTAGGCCAG-GATATTGGAC-TGGAG
1 ATT-GGA-CTTAAAGATAAAGGTGCCAATATGCTGA-TTCAAGGCCAGCGATATTGGACTTGGA-
* *
1379823 GGTGCCAATGTGCTGATTCAAGGCCAGGCTACATTGGACTTAGAGA-AAAGGTGCCAATAT-ATG
62 GGTGCCAATGTGCTGATTCAAGGCCA-GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
* * * ** * * * *
1379886 ATTCAAGGACAGCGATATTGTAATTTCAAGGTACCGATGTGCTGATTCAAGGCCCG-AACATTGG
126 ATTCAAGGCCAGCGATATTG-GACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
* *
1379950 ACGTTAAATGAATAAAGGGGTTGCC-ATATGCCTGAGTCCAGGCCAGC-ATATTGGACTT-GAGG
190 AC-TTAAA-G-ATAAA--GG-TGCCAATATG-CTGATTCAAGGCCAGCGATATTGGACTTGGAGG
**
1380012 TGGCCAATGTGCTGCGTCAAGGCCAGCTAC
248 T-GCCAATGTGCTGATTCAAGGCCAGCTAC
* * * * * * * * *
1380042 CTTGGATTTCACGCTAGAAGGTG-CAATCTGCTGATTAAAGGCCAGCGCTATT-GACGTTTG-GG
1 ATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TTGGAGG
** * *
1380104 TGCCAATGTGCTGATTCAAAACCAGCT-TATTGGTACTTAAAGATTAAAGGGGTGGCCAATATAT
64 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGG-ACTTAAAGA-TAAA--GGT-GCCAATAT-G
* * * * *
1380168 CTGATTCAAGG-CAGCAATATTTGG-CTTGGAGGTGCCCATCTGCTGA-TGAAGGCCAGCTACAA
123 CTGATTCAAGGCCAGCGATA-TTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
* * * *
1380230 T-G-CTTAAAGATAAAGTTGCC-AGATGCCTGATTCAAAGGCCACCGATATTAGGACGTGAGAGG
187 TGGACTTAAAGATAAAGGTGCCAATATG-CTGATTC-AAGGCCAGCGATATT-GGACTTG-GAGG
* *
1380292 TGCCAAGGTGGCTGATTCAA-GCCAGTTAC
248 TGCCAATGT-GCTGATTCAAGGCCAGCTAC
* * * *
1380321 AGTGGATTTAAAAAGATAAAGGTGCCAATAGGCTGATTTAAGG-CAGCGATATTGGACTTGGAGG
1 ATTGGACTT--AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGG
* * * ** *
1380385 TGCCAATGTGTCTGATTCACA--CCAGCTATATTGTACGT-CTGAT-AAGGTGCCAAT-GGCTAG
64 TGCCAATGTG-CTGATTCA-AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT-G
* * *
1380445 A-TCAAGGGCTAGCAATATTGGACTTTGTGGAGGTGCCAATCTGCTGAATATC-AGGCCAGTCTA
126 ATTCAA-GGCCAGCGATATTGGAC--T-TGGAGGTGCCAATGTGCTG-AT-TCAAGGCCAG-CTA
* * * * *
1380508 CAATGCGACTTAACG-T-AAGAGT-CCAAATAT-CTGATTCATTCAAGGGCAACGAT-GTGG-CT
184 CATTG-GACTTAAAGATAAAG-GTGCC-AATATGCTG----ATTCAAGGCCAGCGATATTGGACT
1380567 TGGAGGTG-CAATGGTGC-GATTTC-AGGCCAGCTAC
242 TGGAGGTGCCAAT-GTGCTGA-TTCAAGGCCAGCTAC
* *
1380601 -TT-G-CGTAAAGATAAAGGTGCCAA-ATGCGGATTCAAGGCC-GC-ATATATGGACTTTGGAGG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT-TGGAC-TTGGAGG
* * *
1380660 TGCCATAGGTGCTGAATTC-AGGCAAGCTAAATTGGACTTAAA-ATAAAGGTGGCCAATATGCTG
64 TGCCA-ATGTGCTG-ATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT-GCCAATATGCTG
* *
1380723 ATTCAGGACAAAAAAATCAAGGACAGCGGTATTGGACTT-GAGG-GCCAATGTGCTG-TTCAAGG
126 A-T-------------TCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGG
* * * * *
1380785 CCAGCTACATTGG------A-ATTAA-GTGCCAATAGGCTGGTTCAA-G-CAGGCGGTATATAGA
177 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA-GCGATAT-TGGA
1380840 CTTGGAGGATGCCAATGATGCTTGATTTCAAGGCCAGCTAC
240 CTTGGAGG-TGCCAATG-TGC-TGA-TTCAAGGCCAGCTAC
* * * * *
1380881 AGTGCACATAAAGAT-AAGGTG-CAATATGC-GAGTTCAAGGCCAGTGGATAGTGGAC-TGGA-G
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGA-TTCAAGGCCAG-CGATATTGGACTTGGAGG
* * * *
1380941 TGACAAGGGGCTGATTCAAGGCC-GCTACA-TGGA-TTTAAGATAAAGGTGCC-A-ATGCTTGAT
64 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC-TGAT
** * *
1381001 TAACAGAAAGTACAGCGATATTGG-CTTGGAGGTGCCAATGTGGCTGATTCAA-ACCAGCTAAAT
128 T--C---AAGGCCAGCGATATTGGACTTGGAGGTGCCAATGT-GCTGATTCAAGGCCAGCTACAT
* * * *
1381064 ATGTTGTACGTAATGATAAAGGTGCCAATATGCT-ATTCAAGGCTAGCAATATTGGACTTGGACG
187 -TG--G-ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGA-G
*
1381128 GTG-CAAGGTGTCTGATTCAAGGCCAGCTAC
247 GTGCCAATGTG-CTGATTCAAGGCCAGCTAC
* * **
1381158 ATGGGACTTAAAGATAAAGGTGCCCAATATGCTGATTTCAAAAGCCAGCGA-ATTGGGA-TTAAA
1 ATTGGACTTAAAGATAAAGGTG-CCAATATGCTGA-TTC-AAGGCCAGCGATATT-GGACTTGGA
* * * * * * *
1381221 GGTGCCGATGTGCTGTTTC--CGCCAGCTACATTGTAC-TAAATA-AAATAGTGGGCAATATGCT
62 GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAA-GGT-GCCAATATGCT
* *
1381282 GATTTCTA-GCCA-CGATATTGGACTTGGCGGTGCCAATG-GCTGA-TC-AGGCCAGCTACATTG
125 GA-TTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* * * ** *
1381342 GAC-T-AAGA-AAAGGTGGCCAAGATGCTGA-TCAAGGACAGCGAGATTGGA-TTCATAAGGATA
189 GACTTAAAGATAAAGGT-GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--GGAGG-TG
* *
1381402 CCGATGTGGCCTGATTCAAGTCCAGCTAC
250 CCAATGT-G-CTGATTCAAGGCCAGCTAC
*
1381431 AATTGGAACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGG
1 -ATTGG-ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGG
*
1381496 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATT
64 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
* ** * *
1381561 AAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTT
129 CAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
1381626 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGC
194 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGC
1381691 TGATTCAAGGCCAGCTAC
259 TGATTCAAGGCCAGCTAC
* *
1381709 AATGGACTTAAAGATAAAGGTGCTACA-ATG--GACTT-AA----A--GATA----A-----AGG
1 ATTGGACTTAAAGATAAAGGTGCCA-ATATGCTGA-TTCAAGGCCAGCGATATTGGACTTGGAGG
* * * * * *
1381755 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT---G---GAGGTGCCAATGTGCTGATT
64 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
* * * * * * * *
1381814 CAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATT
129 CAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * ** * * *
1381879 GGACTT---G---GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAG
188 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG---GAG
* *
1381938 GTGCCAATATGCTGATTCAAGGCCAGC-AGT
247 GTGCCAATGTGCTGATTCAAGGCCAGCTA-C
* * * *
1381968 ATTGGAACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 ATTGG-ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--
* * * *** * *
1382027 AAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGC
60 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
* ** * * *** *
1382086 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTA-TA
124 TGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* * * * *
1382150 GACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTAAAGATAAGATA
189 GACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT-----T--G---
* * * *
1382209 AAGGTTAGCCAGATATGCTGATTGCAAGGTCAAGGCCAGCGAT
244 GAGG-T-GCCA-ATGTGCTGA-T------TCAAGGCCAGCTAC
* * * * * * *
1382252 ATTGGACTT--AG---GAGGTGCCAATGTGCTGATTCAAGGCAAGCTACATTGGATTTAAAGATA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G
* * * * *
1382312 AGGTGCCAATCTGCTGATT-AAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTG
61 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
** * * * * ** *
1382370 ATTCAAAACCAGCTATTTTGTACTTAATGATAAGGTGCCAATATATGTTTTGATTCAAGGCTATG
126 ATTCAAGGCCAGCGATATTGGAC-T--TG--GAGGTGCC---A-ATGTGCTGATTCAAGGCCA-G
* * * * * * * *
1382435 CAAATATTGGACTT---G---GAGGGGCCAATCTGCTGATTCAA-GCCAGCTACAAATGGATCTT
181 C-TACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGA-CTT
* ** * * * *
1382493 AAAGATAAAGGGTGCCAAAATGCTTGGATTCAAAGGGACAAACGAT
243 ---G---GA-GGTGCCAATGTGC-T-GATTC-AA-GG-CCAGCTAC
* * * * * * *
1382539 AGTGGAC-T---G-TATGAGGTTCCAATGTGGCTGATTCAAAGGCCCCGGCTACATTGGGACTTA
1 ATTGGACTTAAAGATA-AAGGTGCCAATAT-GCTGATTC-AAGG--CCAGCGATATT-GGACTT-
* * * *** *
1382599 AAGATAAGGTG-CAATTCTGCTTTGATTTCAAGGCCAACGGTATTGGGACTT---G---AGGGTT
59 --G--GAGGTGCCAA-TGTGC--TGA-TTCAAGGCCAGCTACATT-GGACTTAAAGATAAAGG-T
* * * * * * *
1382657 GCCGATGTGCTGAATCAAGGCCAGCTTACATT-GACTTAAAGATGAACAATGGCGCCAATATGCT
114 GCCAATATGCTGATTCAAGGCCAGC-GATATTGGACTT---G--G----A-GGTGCCAATGTGCT
* * * * * * * *
1382721 GATTCAAGG-C-GC-ATATTGGACCTAAAGCTGAAGTGTGTCGATTGGTGCTG-TTCAAGAGGCA
168 GATTCAAGGCCAGCTACATTGGACTTAAAGATAAAG-GTG-CCAAT-ATGCTGATTC-A-AGGCC
* * * * * ** * * *
1382782 AGCACAGGACTT-GACAAAGATGACAAAGGCGCCAACCATGCT-AATCACGGCCAGCGA-
228 AGC-GA-TA-TTGGAC----TTG---GAGGTGCCAA-TGTGCTGATTCAAGGCCAGCTAC
* * ** * * ** *
1382839 TTTGGACCTAAAGGGAAAGGTTG-CAATGTGCTGTCTTCAAGGCCAATGACATTGGACTTAAAGA
1 ATTGGACTTAAAGATAAAGG-TGCCAATATGCTG-ATTCAAGGCCAGCGATATTGGACTT---G-
* * * * * ** *
1382903 TGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAGTTAAAGATGAAGGTATCGAT
60 -G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
* * ** * * **
1382968 GTGCTGATTCTAGGCCAGCGGCATTGCGACTTAAAGATACAAGGCGCCAACATGCTG-TGTCAAG
120 ATGCTGATTCAAGGCCAGCGATATTG-GACTT---G----GAGGTGCCAATGTGCTGAT-TCAAG
* *
1383032 GCCAGCGGACACTT-GAC-TAAAG----A--TGCCAATGTTGCTGATTCAAAAGGCCAGCAGCGA
176 GCCAGC-TACA-TTGGACTTAAAGATAAAGGTGCCAAT-ATGCTGATTC--AAGG-C--CAGCGA
*** * * * * *
1383089 CTAGTCTCCTGAAAGA-TACAACAGGCGGCCAAT-AGCTAATTTCAAGGCCAGCGAT
233 -TA---T--TG---GACT--TGGAGG-TGCCAATGTGCTGA-TTCAAGGCCAGCTAC
* * * * * **
1383144 ATTGGACTTAAAG---AA--TGCCAATGTGCTGATTCTAGGCCAGCAACATTGGGCCTTAAAGGT
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTGGAGGT
1383204 GCGC-ATG-GTCTGATTC-AGG-CAGCTACATTTGGACTTAAAGAT-AAGGTGCCAATATGGCT-
65 GC-CAATGTG-CTGATTCAAGGCCAGCTACA-TTGGACTTAAAGATAAAGGTGCCAATAT-GCTG
* *
1383263 ATTCAAGGCCA-CGATATTGGACTT-GAGGTGCCATTAT-TTCTTGATTCAAGCCCAGCTACATT
126 ATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA--ATGTGC-TGATTCAAGGCCAGCTACATT
* * * * * * ** *
1383325 TGATTTAAAAGATAAACGGTACCAATATGCTGATTCCA-CCCAGC--TATT--AATTTAAAGTG-
188 GGACTT-AAAGATAAA-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGC
*
1383384 CGATGTGCTGATTCAATGGCCAGCTAC
251 CAATGTGCTGATTCAA-GGCCAGCTAC
** * *
1383411 A-TGGACTTGAAATCTAAAGGTGCCAAT-TGCTGATTAAAGG-CAG-TATATTGGAC-TGTGAGT
1 ATTGGACTT-AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG-GAG-
* * *
1383471 GTGCC-ATGTGCTGCTTCAAAGGCCAGCTCCATTGGAC-T-AAGAT-AGGAGTGCCAATATGCTG
63 GTGCCAATGTGCTGATTC-AAGGCCAGCTACATTGGACTTAAAGATAAAG-GTGCCAATATGCTG
* * * * * *
1383532 ATTCAAGGCCAACGGTATTGGACTTTTTGATGTGGCCGATGTGC-GAATCATCAGGCCAGCTACA
126 ATTCAAGGCCAGCGATATTGGAC--TTGGAGGT-GCCAATGTGCTGATTCA--AGGCCAGCT---
* * *
1383596 ACATTTGGGACTTAAGATGACAAAGGCGCCACATATGCTGATTCAAGG-CAGCGATATTGTACTT
183 ACA-TT-GGACTTAA-A-GATAAAGGTGCCA-ATATGCTGATTCAAGGCCAGCGATATTGGACTT
1383660 GGAGGTGCCAAT-T-CTTGA-TCAAGGACCA-CTGTAC
243 GGAGGTGCCAATGTGC-TGATTCAAGG-CCAGC--TAC
* * *
1383694 ATTGCCGA-TT-AAGAT-AAGTGTACCAATATGCTGATTCATTTAATGCCAGCGCACGATATTAG
1 ATTG--GACTTAAAGATAAAG-GTGCCAATATGCTGATTC----AAGGCCA--G--CGATATTGG
* ** * * *
1383756 ATTTTAAAGATG-CGATGGTGAGTGATTCAAAAGGCCAGCTAC--TGG-CTTTAAAGAATAAAGG
55 A-CTTGGAGGTGCCAAT-GTG-CTGATTC--AAGGCCAGCTACATTGGAC-TTAAAG-ATAAAGG
*
1383817 CTGCCAA-ATGCTGTATGTCACAGGCCAG-GATTATGGGGACTTGGAGGTGCCAATGTGCTGATT
113 -TGCCAATATGCTG-AT-TCA-AGGCCAGCGA-TAT-TGGACTTGGAGGTGCCAATGTGCTGATT
** * * * *
1383880 CAAAACCTAAGCTATATTGTAC-TAATGA-AAAGGTGCCCAAATATGCTGATTCAAGG-CAGCAA
172 CAAGGCC--AGCTACATTGGACTTAAAGATAAAGGTG-CC-AATATGCTGATTCAAGGCCAGCGA
* *
1383942 T-TTGGGGACTTGGAGGTGCCAATCTGCTGATTCAAGTGCAGAGCTTAC
233 TATT--GGACTTGGAGGTGCCAATGTGCTGATTCAAG-GC-CAGC-TAC
*
1383990 AATT-GACTTAAAGATAAAGGTG-CAATAATGCTGATTCAAGGCCAACGATATTGGA-TTGGAGT
1 -ATTGGACTTAAAGATAAAGGTGCCAAT-ATGCTGATTCAAGGCCAGCGATATTGGACTTGGAG-
* * * * *
1384052 TTGCCAAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAG-T----GTGCCGATGTGCTGA
63 GTGCC-AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG-
* * * * *
1384112 ATTTCAA-GCCAGCTACATTGGACTTAAAGATAAAGGTG-CACATATGCT-TTTCAAGGTCACAG
126 A-TTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCA-ATGTGCTGATTCAAGG-C-CA-
* ** * * *
1384174 GGGCGAGCGATTTTGGACTT---GAT-TGGGTG-CAATGT-CTTGATTCAAGAGACCAGCTACAT
180 --GCTA-C-A--TTGGACTTAAAGATAAAGGTGCCAATATGC-TGATTCAAG-G-CCAGCGATA-
* * * * * *
1384233 TTGGATTTTAAAGATCAGATAACAGTGTACCAATATGCTGATTCAAAGCCATCGA-
235 TTGGA-CTT---G----G-----AG-GTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * * * * * *
1384288 TTTAGATTTAAAGAT---GCTG---AT-GGCTGATTCACGGGCCAGCTACATTGGACTTAAAGCA
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA-AGGCCAGCGATATTGGACTT---G--
* * * * *
1384346 TAAGGTGCCAATATGCTGA-TCAAGGGCCAGC-AGTATTGGGACGTT---G--GAGGGTGCCAAT
60 -GAGGTGCCAATGTGCTGATTCAA-GGCCAGCTA-CATT-GGAC-TTAAAGATAAAGGTGCCAAT
* ** * * *
1384404 GTGCTGATTCAAGGCCAGTAAGCATTGGGACTATAAGATAACGGTGCC-ATAATGCTGATTCAAG
120 ATGCTGATTCAAGGCCAGCGA-TATT-GGACT-T--G--GA-GGTGCCAAT-GTGCTGATTCAAG
* * * * * *
1384468 GACAGCGGT-CATTGGACTT---G---GAGGTGCCAATGGTGTGATGATTCAAGGCCAGCTACAT
176 GCCAGC--TACATTGGACTTAAAGATAAAGGTGCCAA---TATGCTGATTCAAGGCCAGCGATAT
* *
1384526 TGGACTTAAGATAAAGGTGTCCAATGGTGCTGATTCAAGGGCCAGCTAG
236 TGGACTT--G---GAGGTG-CCAAT-GTGCTGATTCAA-GGCCAGCTAC
* * *
1384575 A-TGGA-TATTAATATAAA-GTGCCAATATGTGGCTTG-TTAAAGGCCAGCGATATTGGACTTGG
1 ATTGGACT-TAAAGATAAAGGTGCCAATA--T-GC-TGATTCAAGGCCAGCGATATTGGACTTGG
* ** * * * *
1384636 AGGTGGCCAATG-GCTGAGTCAAAACCAGCTATATTGTACTTAATG-TAAAGGTTG-CAATCTG-
61 AGGT-GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG-TGCCAATATGC
* * * * * *
1384697 TGATTTCGCAGGCTAGCAATATTGGGACCTGGAGGTGACCCATCTGCTGATTCAAGGCCAGCTAC
124 TGA-TTC-AAGGCCAGCGATATT-GGACTTGGAGGTG-CCAATGTGCTGATTCAAGGCCAGCTAC
* * *
1384762 AATGGAACTTAAAGATAAATGGTGCCAATTAATGCTGATTC-AGGCCAACGATCTTAGTGACTTG
185 ATTGG-ACTTAAAGATAAA-GGTGCCAA-T-ATGCTGATTCAAGGCCAGCGATATT-G-GACTTG
*
1384826 GAGGTGCCAATGTGGCTGATTCAGAGGCCAACTCAAC
244 GAGGTGCCAATGT-GCTGATTCA-AGGCCAGCT--AC
* * * * * *
1384863 ATTGGTCTTAAAG-T----GCGCCGATGTGGCTGA-TCAAGGCCAG-TACA-TGCGACTTAAAGA
1 ATTGGACTTAAAGATAAAGGTGCCAATAT-GCTGATTCAAGGCCAGCGATATTG-GACTT---G-
* * * * *
1384920 TAGGTGCCATAT-TGCTG--T-ATAGGCCAGCGATATTGGACTT---G-T-GAGGTGCCAATGT-
60 GAGGTGCCA-ATGTGCTGATTCA-AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * * * * *
1384975 CTTGATTCAAGACCAGCTA-ATTGGA-TGATAAAAGATAGTACCCAATATGCTGATTCACATGCC
123 C-TGATTCAAGGCCAGCGATATTGGACT--T---GGA-GGT-GCCAATGTGCTGATTCA-AGGCC
* * * * * *
1385038 AGCGATATT--AGTT--A-A-AAA-GAGCCGAT-TGGCT-AGTTCAAGGCCAGCTGA-CTTGGAC
179 AGCTACATTGGACTTAAAGATAAAGGTGCCAATAT-GCTGA-TTCAAGGCCAGC-GATATTGGAC
* * * * *
1385093 TTAAAGATAAAGGTGGCCAATGCTGATTCAGTCAAGGCCAGC-AT
241 TT---G---GAGGT-GCCAATG-TG-CTGATTCAAGGCCAGCTAC
** * * * * *
1385137 A-TGGACTT-----TGGAGG-GTCAATGTTGCTGATTCATCAAG-CAGCTTACATT-GACTTAAG
1 ATTGGACTTAAAGATAAAGGTGCCAAT-ATGCTGATTCA--AGGCCAGC-GATATTGGACTT--G
* * * *** * * * * *
1385193 ATAAAGGTGGCCAA-ATGCTGATTCAAGGACCAACGGTATTGGACCTTGGAGGTTTCCAATGTGC
60 ---GAGGT-GCCAATGTGCTGATTCAAGG-CCAGCTACATTGGA-CTT-AAAG-AT-AAAGGTGC
** * * * ** * *
1385257 TGAT-T-C-AATTCAAGGCCAGCTACATTGGACTAAAGATAAAGGTGCCAATGTGGC-GTTTCAC
116 CAATATGCTGATTCAAGGCCAGCGATATTGGACT-----TGGAGGTGCCAATGT-GCTGATTCAA
* * *
1385318 GGCCAG-TAGATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAGCCAAAGCCAGCGCATA
175 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT----CAAGGCCAGCG-ATA
* * *
1385382 TTGGACTTGGAGGTGCCAAGGTTGCTGATTCAA-ACCAGTCTAT
235 TTGGACTTGGAGGTGCCAATG-TGCTGATTCAAGGCCAG-CTAC
* * * *
1385425 A-TGTACTTAATGA-AAAGGTGCCACAATAATGCTGA-TC-AGGCTAGCAATATTGGAC--GGAG
1 ATTGGACTTAAAGATAAAGGTG-C-CAAT-ATGCTGATTCAAGGCCAGCGATATTGGACTTGGAG
* * * *
1385484 TTG-CAATCTGCTGATGTCAAGGCCAGCTACAATGTGACTTAAAGAGAAAGGTGCCAATATGCTG
63 GTGCCAATGTGCTGAT-TCAAGGCCAGCTACATTG-GACTTAAAGATAAAGGTGCCAATATGCTG
*
1385548 ATTCAAGGCCCAACGATATATTGGAGACATTGGAGGCGATGCCAATGTGCTGATTCAAGGCACA-
126 ATTCAAGG-CCAGCG--ATATT-G-GAC-TTGGA-G-G-TGCCAATGTGCTGATTCAAGGC-CAG
* * * * *
1385612 TTACATTGTATTTAAAGATAAAGGTGGCCAACAATGCTGATTAAAGG-CAGCGAGACTATTGGGA
181 CTACATTGGACTTAAAGATAAAGGT-GCCAA-TATGCTGATTCAAGGCCAGC--GA-TATT-GGA
** *
1385676 -TTGGA--TGCCAACCCCTATGTGCTGATTCAAAACCAGCTAT
240 CTTGGAGGTGCC-A-----ATGTGCTGATTCAAGGCCAGCTAC
* * * *
1385716 ATTTGTCACTTAATG-T--AGGATGCCCAAT-TAGCTGATTCAAAGGCTTAGCCAGTATTGGACC
1 A-TTG-GACTTAAAGATAAAGG-TG-CCAATAT-GCTGATTC-AAGGC-CAGCGA-TATTGGA-C
1385777 TTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-ATTAGGACTT-AAGAGTAAAGGTG-CAAT
57 TTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT-GGACTTAAAGA-TAAAGGTGCCAAT
* *
1385839 ATGCTGATTCAAGGACCGAATCGGTATTGGACTTGGAGGTGGGGCC-ATGTGCTGATTCCAAGGC
120 ATGCTGATTCAAGG-CC--AGCGATATTGGACTTGGAGGT---GCCAATGTGCTGATT-CAAGGC
* * * *
1385903 CAGCTACATTGGAC-T-----TAAA-GTGCC-ATATGCTGGTTC-AGGCTAGCGGTATTAGACTT
178 CAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1385959 GGAGGTGCCACCAATGGTGCTGCATTCAAGGCCCAGCTAC
243 GGAGGTG---CCAAT-GTGCTG-ATTCAAGG-CCAGCTAC
*
1385999 A-TGGCAC-TAAAGATAAAGGTGCCAAAGAATGATGGCTGATTCAAGGCCAGTG-TATTGGAACT
1 ATTGG-ACTTAAAGATAAAGGTGCC----AAT-AT-GCTGATTCAAGGCCAGCGATATTGG-ACT
*
1386061 TGGAGGTGCCAATGTGCTCGATTCAATGGCCAGCT-CATTGGA-TTAAACGATAAAGGTGCCAAG
58 TGGAGGTGCCAATGTGCT-GATTCAA-GGCCAGCTACATTGGACTTAAA-GATAAAGGTGCCAAT
* * * **
1386124 ATGCTGATTAAAGGACAGCG-TATTGG-CTTGGAGGAAGCCAATGTGCTGATTCAACAAACCAGC
120 ATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGG-TGCCAATGTGCTGATTC-A-AGGCCAGC
* * * *
1386187 TATATTGTACTGTAAATGATAAAGTTG-CAATATGCGGGATTCAA-GCCTAGAC-ATATTGGACT
182 TACATTGGACT-TAAA-GATAAAGGTGCCAATATGC-TGATTCAAGGCC-AG-CGATATTGGACT
*
1386249 T-GAGGTGCCAAGGTGCTGATTCAA-GCCAGCTAC
242 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * **
1386282 ATTGGACTTTACAGATAAGGAGTGCC-ATATGCTGATTCCAAAGCC-GACGATATTGGA-TTAAA
1 ATTGGAC-TTAAAGATAAAG-GTGCCAATATGCTGATT-CAAGGCCAG-CGATATTGGACTTGGA
* *
1386344 GGTG-CGATGTGCTGATTCCAGGCCAGCTACATTTGGACTTAAAGATAAAAGGTG-CAATATGTC
62 GGTGCCAATGTGCTGATTCAAGGCCAGCTACA-TTGGACTTAAAGAT-AAAGGTGCCAATATG--
* * *
1386407 CGGATTTCTATGGCCAGCG-TATTGGAATTCGTGGAGGTGCCAATGTGCTGATTCAAGG-CAGCT
123 CTGA-TTC-AAGGCCAGCGATATTGG-A--CTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCT
1386470 ACATTGGACTTTAAAGATAAA-G-GCCAAT-TGCTTGATTTCAAAGGAGGACC-GCGATATTGGA
183 ACATTGGAC-TTAAAGATAAAGGTGCCAATATGC-TGA-TTC--A--AGG-CCAGCGATATTGGA
* ** * *
1386531 TTTAAAGGTACCGATGCTGCTGATTCAAGGCCAGCTTAC
240 CTTGGAGGTGCCAATG-TGCTGATTCAAGGCCAGC-TAC
* *
1386570 ATTGGACGTTAAGTGATAAAGGTGCCAATATGCTGATTCAAGGCAACCAGCGATATTGGACTTTG
1 ATTGGAC-TTAA-AGATAAAGGTGCCAATATGCTGATTCAAGG---CCAGCGATATTGGACTTGG
* *
1386635 AGGTGTGCCAATGTGCTGATTCAAGTCAAGCTACATTGGA-TTAAAGCA-AAAGGTG-CAATAAT
61 A-G-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-ATAAAGGTGCCAAT-AT
* *
1386697 GCTGATTAAAGGCCCAGCG-TACTATGGACTTGGACGGTGGGCACAA-GTGCTGATTCAAAGCCA
122 GCTGATTCAAGG-CCAGCGATA-T-TGGACTTGGA-GGT--GC-CAATGTGCTGATTCAAGGCCA
* * **
1386760 GCTATATTGTACTTAAAGAATAAAGGGTGCCAATGAATGCTGATTCAAGGGTATGC-ATATGTGG
180 GCTACATTGGACTTAAAG-ATAAA-GGTGCCAAT--ATGCTGATTCAAGGCCA-GCGATAT-TGG
* * *
1386824 ACTTGGAGGTGCCCAATCTGCTGATT-TACG-CAGCTTAC
239 ACTTGGAGGTG-CCAATGTGCTGATTCAAGGCCAGC-TAC
* * *
1386862 AATT-GACTTAAAGAGAAAGGTG-CAATATGC-GATAT-ACAGGCCAACGAAATTGAGACTTGGA
1 -ATTGGACTTAAAGATAAAGGTGCCAATATGCTGAT-TCA-AGGCCAGCGATATTG-GACTTGG-
*
1386923 AGGTGCCAA-GTGCTGATTC-AGGCCAGCTACATTGGATTTAAAAGAT-AA-GTGCACAATATGC
61 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATAAAGGTGC-CAATATGC
** * **
1386984 TGATGAAAGAAGGCCCGCGATATTGGACTTGGA-GTGTCCAGATGTGCTGATTCAAACCCAGCTA
124 TGAT---TCAAGGCCAGCGATATTGGACTTGGAGGTG-CCA-ATGTGCTGATTCAAGGCCAGCTA
* *
1387048 TATTGGTACTTAATGATAAAGG
184 CATTGG-ACTTAAAGATAAAGG
1387070 AAAAAAGTGC
Statistics
Matches: 15735, Mismatches: 1498, Indels: 2202
0.81 0.08 0.11
Matches are distributed among these distances:
253 70 0.00
254 10 0.00
255 2 0.00
256 9 0.00
257 1 0.00
258 1 0.00
259 103 0.01
260 5 0.00
262 3 0.00
264 2 0.00
266 19 0.00
267 37 0.00
268 39 0.00
269 96 0.01
270 2452 0.16
271 96 0.01
272 57 0.00
273 101 0.01
274 269 0.02
275 622 0.04
276 5368 0.34
277 534 0.03
278 211 0.01
279 485 0.03
280 571 0.04
281 366 0.02
282 611 0.04
283 248 0.02
284 305 0.02
285 327 0.02
286 370 0.02
287 160 0.01
288 280 0.02
289 176 0.01
290 165 0.01
291 181 0.01
292 178 0.01
293 142 0.01
294 146 0.01
295 115 0.01
296 61 0.00
297 129 0.01
298 73 0.00
299 125 0.01
300 106 0.01
301 56 0.00
302 39 0.00
303 56 0.00
304 59 0.00
305 42 0.00
306 31 0.00
307 18 0.00
308 4 0.00
309 2 0.00
310 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (276 bp):
ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
ATTCAAGGCCAGCTAC
Found at i:1370908 original size:21 final size:21
Alignment explanation
Indices: 1370884--1370951 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1370874 CTTAATGATA
1370884 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1370905 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1370927 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1370948 AAGG
1 AAGG
1370952 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1371595 original size:21 final size:21
Alignment explanation
Indices: 1371571--1371638 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1371561 CTTAATGATA
1371571 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1371592 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1371614 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1371635 AAGG
1 AAGG
1371639 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1372282 original size:21 final size:21
Alignment explanation
Indices: 1372258--1372325 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1372248 CTTAATGATA
1372258 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1372279 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1372301 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1372322 AAGG
1 AAGG
1372326 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1372920 original size:21 final size:21
Alignment explanation
Indices: 1372896--1372963 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1372886 CTTAATGATA
1372896 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1372917 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1372939 GAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1372960 AAGG
1 AAGG
1372964 CCAGCTACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1373748 original size:21 final size:21
Alignment explanation
Indices: 1373724--1373791 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1373714 CTTAATGATA
1373724 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1373745 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1373767 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1373788 AAGG
1 AAGG
1373792 CCAGCTACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1374926 original size:21 final size:21
Alignment explanation
Indices: 1374902--1374969 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1374892 CTTAATGATA
1374902 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1374923 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1374945 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1374966 AAGG
1 AAGG
1374970 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1375202 original size:21 final size:21
Alignment explanation
Indices: 1375178--1375245 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1375168 CTTAATGATA
1375178 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1375199 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1375221 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1375242 AAGG
1 AAGG
1375246 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1375889 original size:21 final size:21
Alignment explanation
Indices: 1375865--1375932 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1375855 CTTAATGATA
1375865 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1375886 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1375908 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1375929 AAGG
1 AAGG
1375933 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1376576 original size:21 final size:21
Alignment explanation
Indices: 1376552--1376619 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1376542 CTTAATGATA
1376552 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1376573 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1376595 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1376616 AAGG
1 AAGG
1376620 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1377490 original size:21 final size:21
Alignment explanation
Indices: 1377466--1377533 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1377456 CTTAATGATA
1377466 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1377487 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1377509 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1377530 AAGG
1 AAGG
1377534 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1378224 original size:21 final size:21
Alignment explanation
Indices: 1378200--1378267 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1378190 CTTAATGATA
1378200 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1378221 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1378243 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1378264 AAGG
1 AAGG
1378268 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1378500 original size:21 final size:21
Alignment explanation
Indices: 1378476--1378543 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1378466 CTTAATGATA
1378476 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1378497 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1378519 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1378540 AAGG
1 AAGG
1378544 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1378776 original size:21 final size:21
Alignment explanation
Indices: 1378752--1378819 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1378742 CTTAATGATA
1378752 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1378773 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1378795 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1378816 AAGG
1 AAGG
1378820 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1379051 original size:21 final size:21
Alignment explanation
Indices: 1379027--1379094 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1379017 CTTAATGATA
1379027 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1379048 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1379070 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1379091 AAGG
1 AAGG
1379095 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1381511 original size:43 final size:43
Alignment explanation
Indices: 1381449--1381717 Score: 268
Period size: 43 Copynumber: 6.0 Consensus size: 43
1381439 CTTAATGATA
*
1381449 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTG
* * * *
1381492 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT---G
* *
1381538 ATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTG
1 ---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTG
* * ** *
1381584 GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAAAG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT---G
* *
1381630 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG
1 ---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTG
* * * *
1381676 GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1381718 AAAGATAAAG
Statistics
Matches: 183, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
43 108 0.59
46 4 0.02
49 71 0.39
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTG
Found at i:1381733 original size:26 final size:26
Alignment explanation
Indices: 1381704--1381757 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
1381694 TTCAAGGCCA
1381704 GCTACAATGGACTTAAAGATAAAGGT
1 GCTACAATGGACTTAAAGATAAAGGT
1381730 GCTACAATGGACTTAAAGATAAAGGT
1 GCTACAATGGACTTAAAGATAAAGGT
1381756 GC
1 GC
1381758 CAATATGCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (26 bp):
GCTACAATGGACTTAAAGATAAAGGT
Found at i:1381838 original size:118 final size:118
Alignment explanation
Indices: 1381622--1381849 Score: 402
Period size: 118 Copynumber: 1.9 Consensus size: 118
1381612 GCTATATTGT
* *
1381622 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAAT
1 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTGGAGGTGCCAAT
1381687 CTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCTACAATGG
66 CTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCTACAATGG
*
1381740 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAAT
1 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTGGAGGTGCCAAT
* * *
1381805 GTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGC
66 CTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGC
1381850 CAATATGCTG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (118 bp):
ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTGGAGGTGCCAAT
CTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCTACAATGG
Found at i:1381868 original size:49 final size:48
Alignment explanation
Indices: 1381737--1382413 Score: 452
Period size: 43 Copynumber: 14.5 Consensus size: 48
1381727 GGTGCTACAA
* *
1381737 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATAT
1 TGGACTT-AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* * *
1381786 TGGACTT--G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
1 TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* * *
1381829 TGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATAT
1 TGGACTT-AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* * **
1381878 TGGACTT--G---GAGGTGCCAATGTGCTGATTCAAAACCAGCTATAT
1 TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
*
1381921 TGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTAT
1 TGGACTTAA-GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA-TAT
* * *
1381970 TGGAACTT--G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
1 TGG-ACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* **
1382014 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTAT
1 TGGACTT-AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* *
1382063 TGGACTT--G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTATAT
1 TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* **
1382106 TGGAC-T----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTA-
1 TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* * * *
1382148 TAGACTT--G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
1 TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* *
1382191 TGCACTAAAGATAAGATAAAGGTTAGCCAGATATGCTGATTGCAAGGTCAAGGCCAGCGATAT
1 TGGACT-----TAAGATAAAGG-T-GCCA-ATATGCTGA-T------TCAAGGCCAGCTATAT
* * * *
1382254 TGGACTT-AG---GAGGTGCCAATGTGCTGATTCAAGGCAAGCTACAT
1 TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* * *
1382298 TGGATTTAAAGAT-AAGGTGCCAATCTGCTGATT-AAGGCCAGCGATAT
1 TGGACTT-AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* * ** *
1382345 TGGACTT--G---GAGGTGCCAATGTGCTGATTCAAAACCAGCTATTT
1 TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
*
1382388 TGTACTTAATGAT-AAGGTGCCAATAT
1 TGGACTTAA-GATAAAGGTGCCAATAT
1382414 ATGTTTTGAT
Statistics
Matches: 494, Mismatches: 78, Indels: 113
0.72 0.11 0.16
Matches are distributed among these distances:
42 51 0.10
43 160 0.32
44 53 0.11
45 1 0.00
46 9 0.02
47 18 0.04
48 31 0.06
49 110 0.22
50 6 0.01
51 8 0.02
52 4 0.01
53 4 0.01
54 4 0.01
55 4 0.01
56 8 0.02
57 3 0.01
58 1 0.00
63 19 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
TGGACTTAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
Found at i:1381887 original size:92 final size:92
Alignment explanation
Indices: 1381730--1383201 Score: 1046
Period size: 92 Copynumber: 15.2 Consensus size: 92
1381720 AGATAAAGGT
* *
1381730 GCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
1381795 AGGTGCCAATGTGCTGATTCAAGGCCA
66 AGGTGCCAATGTGCTGATTCAAGGCCA
* *
1381822 GCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
**
1381887 AGGTGCCAATGTGCTGATTCAAAACCA
66 AGGTGCCAATGTGCTGATTCAAGGCCA
* * *
1381914 GCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGAACTT
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGG-ACTT
1381978 GGAGGTGCCAATGTGCTGATTCAAGGCCA
64 GGAGGTGCCAATGTGCTGATTCAAGGCCA
* *
1382007 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
1382072 AGGTGCCAATGTGCTGATTCAAGGCCA
66 AGGTGCCAATGTGCTGATTCAAGGCCA
* * * *
1382099 GCTATATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTA-TAGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
1382157 AGGTGCCAATGTGCTGATTCAAGGCCA
66 AGGTGCCAATGTGCTGATTCAAGGCCA
* *
1382184 GCTACATTGCACTAAAGATAAGATAAAGGTTAGCCAGATATGCTGATTGCAAGGTCAAGGCCAGC
1 GCTACATTGGACT---TA-AAGATAAAGG-T-GCCA-ATATGCTGA-T------TCAAGGCCAGC
*
1382249 GATATTGGACTTAGGAGGTGCCAATGTGCTGATTCAAGGCAA
52 GATATTGGACTT-GGAGGTGCCAATGTGCTGATTCAAGGCCA
* *
1382291 GCTACATTGGATTTAAAGAT-AAGGTGCCAATCTGCTGATT-AAGGCCAGCGATATTGGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
**
1382354 AGGTGCCAATGTGCTGATTCAAAACCA
66 AGGTGCCAATGTGCTGATTCAAGGCCA
** * * * * *
1382381 GCTATTTTGTACTTAATGAT-AAGGTGCCAATATATGTTTTGATTCAAGGCTATGCAAATATTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCC-A-ATATG--CTGATTCAAGGCCA-GC-GATATTGG
* *
1382445 ACTTGGAGGGGCCAATCTGCTGATTCAA-GCCA
60 ACTTGGAGGTGCCAATGTGCTGATTCAAGGCCA
* * * * *
1382477 GCTACAAATGGATCTTAAAGATAAAGGGTGCCAAAATGCTTGGATTCAAAGGGACAAACGATAGT
1 GCTAC-ATTGGA-CTTAAAGATAAA-GGTGCCAATATGC-T-GATTC-AA-GG-CCAGCGATATT
* * *
1382542 GGACTGTATGAGGTTCCAATGTGGCTGATTCAAAGGCCCCG
58 GGACT-T-GGAGGTGCCAATGT-GCTGATTC-AAGG--CCA
* * *
1382583 GCTACATTGGGACTTAAAGAT-AAGGTG-CAATTCTGCTTTGATTTCAAGGCCAACGGTATTGGG
1 GCTACATT-GGACTTAAAGATAAAGGTGCCAA-TATGC--TGA-TTCAAGGCCAGCGATATT-GG
* *
1382646 ACTT-GAGGGTTGCCGATGTGCTGAATCAAGGCCA
60 ACTTGGA-GG-TGCCAATGTGCTGATTCAAGGCCA
*
1382680 GCTTACATT-GACTTAAAGATGAACAATGGCGCCAATATGCTGATTCAAGG-C-GC-ATATTGGA
1 GC-TACATTGGACTTAAAGAT--A-AA-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* * * *
1382741 CCTAAAGCTGAAGTGTGTCGATTGGTGCTG-TTCAAGAGGCAA
61 -CT-----TGGAG-GTG-CCAAT-GTGCTGATTC-A-AGGCCA
* * * *
1382783 GC-ACA--GGACTTGACAAAGATGACAAAGGCGCCAACCATGCT-AATCACGGCCAGCGAT-TTG
1 GCTACATTGGACTT---AAAGAT---AAAGGTGCCAA-TATGCTGATTCAAGGCCAGCGATATTG
* *
1382843 GACCTAAAGGGAAAGGTTG-CAATGTGCTGTCTTCAAGGCCA
59 GA-CT---TGG--AGG-TGCCAATGTGCTG-ATTCAAGGCCA
* *
1382884 -ATGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAG
1 GCT-ACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
** * *
1382948 TTAAAGATGAAGGTATCGATGTGCTGATTCTAGGCCA
62 TT---G--G-AGGTGCCAATGTGCTGATTCAAGGCCA
** * * *
1382985 GCGGCATTGCGACTTAAAGATACAAGGCGCCAACATGCTG-TGTCAAGGCCAGCGGACACTT-GA
1 GCTACATTG-GACTTAAAGATA-AAGGTGCCAATATGCTGAT-TCAAGGCCAGC-GATA-TTGGA
** *
1383048 C-TAAAGATGCCAATGTTGCTGATTCAAAAGGCCA
61 CTTGGAGGTGCCAATG-TGCTGATTC--AAGGCCA
* * * * *
1383082 GC-AGCGACTAGTCTCCTGAAAGATACAACAGGCGGCCAATA-GCTAATTTCAAGGCCAGCGATA
1 GCTA-C-ATTGGACT--T-AAAGAT--AA-AGG-TGCCAATATGCTGA-TTCAAGGCCAGCGATA
** * *
1383145 TTGGACTTAAAGAATGCCAATGTGCTGATTCTAGGCCA
56 TTGGACTTGGAG-GTGCCAATGTGCTGATTCAAGGCCA
* *
1383183 GCAACATTGGGCCTTAAAG
1 GCTACATT-GGACTTAAAG
1383202 GTGCGCATGG
Statistics
Matches: 1122, Mismatches: 133, Indels: 244
0.75 0.09 0.16
Matches are distributed among these distances:
85 45 0.04
86 34 0.03
90 49 0.04
91 24 0.02
92 187 0.17
93 84 0.07
94 15 0.01
95 27 0.02
96 22 0.02
97 58 0.05
98 45 0.04
99 36 0.03
100 74 0.07
101 126 0.11
102 99 0.09
103 75 0.07
104 40 0.04
105 27 0.02
106 16 0.01
107 39 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
AGGTGCCAATGTGCTGATTCAAGGCCA
Found at i:1381894 original size:210 final size:210
Alignment explanation
Indices: 1381520--1381941 Score: 673
Period size: 210 Copynumber: 2.0 Consensus size: 210
1381510 TTCAAGGCCA
* * *
1381520 GCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGG
1 GCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAACGATATTGGACTTGG
* *
1381585 AGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTG
66 AGGTGCCAATGTGCTGATTCAAAACCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
* * **
1381650 ATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGA
131 ATTAAAGGCCAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAAACCAGCTACAATGGA
1381715 CTTAAAGATAAAGGT
196 CTTAAAGATAAAGGT
*
1381730 GCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGG
1 GCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAACGATATTGGACTTGG
** *
1381795 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTG
66 AGGTGCCAATGTGCTGATTCAAAACCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
* * * * *
1381860 ATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTA
131 ATTAAAGGCCAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAAACCAGCTACAATGGA
*
1381925 CTTAATGATAAAGGT
196 CTTAAAGATAAAGGT
1381940 GC
1 GC
1381942 CAATATGCTG
Statistics
Matches: 193, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
210 193 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (210 bp):
GCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAACGATATTGGACTTGG
AGGTGCCAATGTGCTGATTCAAAACCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
ATTAAAGGCCAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAAACCAGCTACAATGGA
CTTAAAGATAAAGGT
Found at i:1382066 original size:185 final size:184
Alignment explanation
Indices: 1381730--1382741 Score: 1020
Period size: 185 Copynumber: 5.3 Consensus size: 184
1381720 AGATAAAGGT
* *
1381730 GCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
*
1381795 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTG
66 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
* * **
1381860 ATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCA
131 ATTCAAGGACAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCA
* * *
1381914 GCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGAACTT
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGG-ACTT
1381978 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
64 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
*
1382043 TGATTCAAGGACAGCGGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCA
129 TGATTCAAGGACAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCA
* * * *
1382099 GCTATATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTA-TAGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
* *
1382157 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTAAAGATAAGATAAAGGTTAGCCAGA
66 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT---TA-AAGATAAAGG-T-GCCA-A
1382222 TATGCTGATTGCAAGGTCAAGGCCAGCGATATTGGACTTAGGAGGTGCCAATGTGCTGATTCAAG
124 TATGCTGATT-CAAGG---A---CAGCGATATTGGACTT-GGAGGTGCCAATGTGCTGATTCAAG
*
1382287 GCAA
181 GCCA
* *
1382291 GCTACATTGGATTTAAAGAT-AAGGTGCCAATCTGCTGATT-AAGGCCAGCGATATTGGACTTGG
1 GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
** ** * *
1382354 AGGTGCCAATGTGCTGATTCAAAACCAGCTATTTTGTACTTAATGAT-AAGGTGCCAATATATGT
66 AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC-A-ATATG-
* * * *
1382418 TTTGATTCAAGG-CTATGCAAATATTGGACTTGGAGGGGCCAATCTGCTGATTCAA-GCCA
128 -CTGATTCAAGGAC-A-GC-GATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCA
* * * * *
1382477 GCTACAAATGGATCTTAAAGATAAAGGGTGCCAAAATGCTTGGATTCAAAGGGACAAACGATAGT
1 GCTAC-ATTGGA-CTTAAAGATAAA-GGTGCCAATATGC-T-GATTC-AA-GG-CCAGCGATATT
* * *
1382542 GGACTGTATGAGGTTCCAATGTGGCTGATTCAAAGGCCCCGGCTACATTGGGACTTAAAGAT-AA
58 GGACT-T-GGAGGTGCCAATGT-GCTGATTC-AAGG--CCAGCTACATT-GGACTTAAAGATAAA
* * * * *
1382606 GGTG-CAATTCTGCTTTGATTTCAAGGCCAACGGTATTGGGACTT-GAGGGTTGCCGATGTGCTG
116 GGTGCCAA-TATGC--TGA-TTCAAGGACAGCGATATT-GGACTTGGA-GG-TGCCAATGTGCTG
*
1382669 AATCAAGGCCA
174 ATTCAAGGCCA
*
1382680 GCTTACATT-GACTTAAAGATGAACAATGGCGCCAATATGCTGATTCAAGG-C-GC-ATATTGGA
1 GC-TACATTGGACTTAAAGAT--A-AA-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1382741 C
61 C
1382742 CTAAAGCTGA
Statistics
Matches: 697, Mismatches: 70, Indels: 110
0.79 0.08 0.13
Matches are distributed among these distances:
177 45 0.06
178 2 0.00
179 33 0.05
180 1 0.00
181 10 0.01
182 1 0.00
183 5 0.01
184 64 0.09
185 136 0.20
186 9 0.01
187 29 0.04
188 20 0.03
189 2 0.00
190 14 0.02
191 23 0.03
192 51 0.07
193 10 0.01
194 3 0.00
195 2 0.00
196 33 0.05
197 63 0.09
198 13 0.02
199 8 0.01
200 11 0.02
201 27 0.04
202 39 0.06
203 27 0.04
204 16 0.02
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (184 bp):
GCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGG
AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG
ATTCAAGGACAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCA
Found at i:1382371 original size:42 final size:44
Alignment explanation
Indices: 1382238--1382375 Score: 172
Period size: 44 Copynumber: 3.1 Consensus size: 44
1382228 GATTGCAAGG
1382238 TCAAGGCCAGCGATATTGGACTTAGGAGGTGCCAATGTGCTGAT
1 TCAAGGCCAGCGATATTGGACTTAGGAGGTGCCAATGTGCTGAT
* * * * * *
1382282 TCAAGGCAAGCTACATTGGATTTAAAGATAAGGTGCCAATCTGCTGAT
1 TCAAGGCCAGCGATATTGGACTT--AG--GAGGTGCCAATGTGCTGAT
1382330 T-AAGGCCAGCGATATTGGACTT-GGAGGTGCCAATGTGCTGAT
1 TCAAGGCCAGCGATATTGGACTTAGGAGGTGCCAATGTGCTGAT
1382372 TCAA
1 TCAA
1382376 AACCAGCTAT
Statistics
Matches: 77, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
42 18 0.23
43 2 0.03
44 20 0.26
46 2 0.03
47 17 0.22
48 18 0.23
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (44 bp):
TCAAGGCCAGCGATATTGGACTTAGGAGGTGCCAATGTGCTGAT
Found at i:1382410 original size:48 final size:48
Alignment explanation
Indices: 1382238--1382411 Score: 161
Period size: 48 Copynumber: 3.8 Consensus size: 48
1382228 GATTGCAAGG
* *
1382238 TCAAGGCCAGCGATATTGGACTT-A-G--GAGGTGCCAATGTGCTGAT
1 TCAAGGCCAGCTATATTGGACTTAATGATAAGGTGCCAATGTGCTGAT
* * * * *
1382282 TCAAGGCAAGCTACATTGGATTTAAAGATAAGGTGCCAATCTGCTGAT
1 TCAAGGCCAGCTATATTGGACTTAATGATAAGGTGCCAATGTGCTGAT
* *
1382330 T-AAGGCCAGCGATATTGGAC-T--TG--GAGGTGCCAATGTGCTGAT
1 TCAAGGCCAGCTATATTGGACTTAATGATAAGGTGCCAATGTGCTGAT
** * *
1382372 TCAAAACCAGCTATTTTGTACTTAATGATAAGGTGCCAAT
1 TCAAGGCCAGCTATATTGGACTTAATGATAAGGTGCCAAT
1382412 ATATGTTTTG
Statistics
Matches: 101, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 18 0.18
43 14 0.14
44 21 0.21
45 1 0.01
46 4 0.04
47 15 0.15
48 28 0.28
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (48 bp):
TCAAGGCCAGCTATATTGGACTTAATGATAAGGTGCCAATGTGCTGAT
Found at i:1382908 original size:101 final size:102
Alignment explanation
Indices: 1382661--1383038 Score: 277
Period size: 102 Copynumber: 3.7 Consensus size: 102
1382651 AGGGTTGCCG
* * * * * *
1382661 ATGTGCTGAATCAAGGCCAGCTTACATT--GACTTAAAGATGAACAATGGCGCCAATATGCTGAT
1 ATGTGCTGATTCAAGGCCAAC-GACATTGCGACTTAAAGATG-ACAAAGGCGCCAACATGCTGAA
** *
1382724 TCAAGG-C-GC-ATATTGGACCTAAAGCTGAAGTGTGTCGA
64 TCAAGGCCAGCGATATTGGACCTAAAGAGGAAG-GTATC-A
* *
1382762 TTGGTGCTG-TTCAAGAGGCAA-GCACA--G-GACTTGACAAAGATGACAAAGGCGCCAACCATG
1 AT-GTGCTGATTCAAG-GCCAACG-ACATTGCGACTT---AAAGATGACAAAGGCGCCAA-CATG
*
1382822 CT-AATCACGGCCAGCGAT-TTGGACCTAAAG-GGAAAGGT-TGCA
59 CTGAATCAAGGCCAGCGATATTGGACCTAAAGAGG-AAGGTAT-CA
* * * * *
1382864 ATGTGCTGTCTTCAAGGCCAATGACATTG-GACTTAAAGATGACAAAGGTGCCAATATGCTGATT
1 ATGTGCTG-ATTCAAGGCCAACGACATTGCGACTTAAAGATGACAAAGGCGCCAACATGCTGAAT
** * *
1382928 CAAGGCCAGCGATATTGGAGTTAAAGATGAAGGTATCG
65 CAAGGCCAGCGATATTGGACCTAAAGAGGAAGGTATCA
* * * **
1382966 ATGTGCTGATTCTAGGCCAGCGGCATTGCGACTTAAAGAT-AC-AAGGCGCCAACATGCTGTGTC
1 ATGTGCTGATTCAAGGCCAACGACATTGCGACTTAAAGATGACAAAGGCGCCAACATGCTGAATC
1383029 AAGGCCAGCG
66 AAGGCCAGCG
1383039 GACACTTGAC
Statistics
Matches: 225, Mismatches: 29, Indels: 47
0.75 0.10 0.16
Matches are distributed among these distances:
100 37 0.16
101 65 0.29
102 72 0.32
103 26 0.12
104 23 0.10
105 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (102 bp):
ATGTGCTGATTCAAGGCCAACGACATTGCGACTTAAAGATGACAAAGGCGCCAACATGCTGAATC
AAGGCCAGCGATATTGGACCTAAAGAGGAAGGTATCA
Found at i:1382924 original size:53 final size:52
Alignment explanation
Indices: 1382854--1383009 Score: 135
Period size: 52 Copynumber: 3.0 Consensus size: 52
1382844 ACCTAAAGGG
* * *
1382854 AAAGGTTGCAATGTGCTGTCTTCAAGGCCAATGACATTGGACTTAAAGATGAC
1 AAAGGTTGCAATATGCTG-ATTCAAGGCCAACGACATTGGACTTAAAGATGAC
* * *
1382907 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAGTTAAAGATG--
1 AAAGGTTG-CAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC
* * * * *
1382957 -AAGGTAT-CGATGTGCTGATTCTAGGCCAGCGGCATTGCGACTTAAAGAT-AC
1 AAAGGT-TGCAATATGCTGATTCAAGGCCAACGACATTG-GACTTAAAGATGAC
1383008 AA
1 AA
1383010 GGCGCCAACA
Statistics
Matches: 84, Mismatches: 12, Indels: 15
0.76 0.11 0.14
Matches are distributed among these distances:
49 29 0.35
50 10 0.12
51 1 0.01
52 30 0.36
53 14 0.17
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (52 bp):
AAAGGTTGCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC
Found at i:1383182 original size:44 final size:43
Alignment explanation
Indices: 1383133--1383244 Score: 106
Period size: 44 Copynumber: 2.6 Consensus size: 43
1383123 GCTAATTTCA
*
1383133 AGGCCAGCGATATTGGACTTAAAGAATGCCAATGTGCTGATTC
1 AGGCCAGCGACATTGGACTTAAAGAATGCCAATGTGCTGATTC
* * *
1383176 TAGGCCAGCAACATTGGGCCTTAAAG-GTGCGC-ATG-GTCTGATTC
1 -AGGCCAGCGACATT-GGACTTAAAGAATGC-CAATGTG-CTGATTC
*
1383220 AGG-CAGCTACATTTGGACTTAAAGA
1 AGGCCAGCGACA-TTGGACTTAAAGA
1383245 TAAGGTGCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
42 16 0.28
43 6 0.11
44 25 0.44
45 10 0.18
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (43 bp):
AGGCCAGCGACATTGGACTTAAAGAATGCCAATGTGCTGATTC
Found at i:1384527 original size:97 final size:93
Alignment explanation
Indices: 1384312--1384565 Score: 259
Period size: 97 Copynumber: 2.6 Consensus size: 93
1384302 TGCTGATGGC
* *
1384312 TGATTCACGGGCCAGCTACATTGGACTTAAAGCATAAGGTGCCA-ATATGCTGA-TCAAGGGCCA
1 TGATTCA-AGGCCAGCTACATTGGACTT-AAG-ATAAGGTGCCATA-ATGCTGATTCAA-GGACA
*
1384375 GCAGTATTGGGACGTTGGAGGGTGCCAATGTGC
61 GCAGTATTGGGACGTTGGAGGGTGCCAATGTGA
1384408 TGATTCAAGGCCAG-TAAGCATTGGGACTATAAGATAACGGTGCCATAATGCTGATTCAAGGACA
1 TGATTCAAGGCCAGCT-A-CATT-GGACT-TAAGATAA-GGTGCCATAATGCTGATTCAAGGACA
*
1384472 GCGGTCATT-GGAC-TTGGA-GGTGCCAATGGTGTGA
61 GCAGT-ATTGGGACGTTGGAGGGTGCCAA---TGTGA
**
1384506 TGATTCAAGGCCAGCTACATTGGACTTAAGATAAAGGTGTCCAATGGTGCTGATTCAAGG
1 TGATTCAAGGCCAGCTACATTGGACTTAAGAT-AAGGTG-CC-ATAATGCTGATTCAAGG
1384566 GCCAGCTAGA
Statistics
Matches: 137, Mismatches: 6, Indels: 29
0.80 0.03 0.17
Matches are distributed among these distances:
94 1 0.01
95 25 0.18
96 29 0.21
97 53 0.39
98 28 0.20
99 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (93 bp):
TGATTCAAGGCCAGCTACATTGGACTTAAGATAAGGTGCCATAATGCTGATTCAAGGACAGCAGT
ATTGGGACGTTGGAGGGTGCCAATGTGA
Found at i:1384569 original size:51 final size:47
Alignment explanation
Indices: 1384310--1384599 Score: 165
Period size: 51 Copynumber: 6.0 Consensus size: 47
1384300 GATGCTGATG
* *
1384310 GCTGATTCACGGGCCAGCTACATTGGACTTAAAGCATAAGGTGCCAATAT
1 GCTGATTCA-AGGCCAGCTACATTGGACTT-AAG-ATAAGGTGCCAATGT
* * *
1384360 GCTGA-TCAAGGGCCAGC-AGTATTGGGACGTT--G-GAGGGTGCCAATGT
1 GCTGATTCAA-GGCCAGCTA-CATT-GGAC-TTAAGATAAGGTGCCAATGT
*
1384406 GCTGATTCAAGGCCAG-TAAGCATTGGGACTATAAGATAACGGTGCC-ATAAT
1 GCTGATTCAAGGCCAGCT-A-CATT-GGACT-TAAGATAA-GGTGCCAAT-GT
* *
1384457 GCTGATTCAAGGACAGCGGT-CATTGGACTT--G--GAGGTGCCAATGGTGT
1 GCTGATTCAAGGCCAGC--TACATTGGACTTAAGATAAGGTGCCAA---TGT
*
1384504 GATGATTCAAGGCCAGCTACATTGGACTTAAGATAAAGGTGTCCAATGGT
1 GCTGATTCAAGGCCAGCTACATTGGACTTAAGAT-AAGGTG-CCAAT-GT
* * * *
1384554 GCTGATTCAAGGGCCAGCTAGA-TGGATATTAATATAAAGTGCCAAT
1 GCTGATTCAA-GGCCAGCTACATTGGA-CTTAAGATAAGGTGCCAAT
1384600 ATGTGGCTTG
Statistics
Matches: 190, Mismatches: 20, Indels: 61
0.70 0.07 0.23
Matches are distributed among these distances:
44 6 0.03
45 3 0.02
46 33 0.17
47 32 0.17
48 4 0.02
49 21 0.11
50 37 0.19
51 49 0.26
52 4 0.02
54 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTGATTCAAGGCCAGCTACATTGGACTTAAGATAAGGTGCCAATGT
Found at i:1385242 original size:94 final size:98
Alignment explanation
Indices: 1385071--1385304 Score: 258
Period size: 95 Copynumber: 2.4 Consensus size: 98
1385061 GATTGGCTAG
*
1385071 TTCAAGGCCAGCTGAC-TTGGACTTAAAGATAAAGGTGGCC-AATGCTGATTCAGTCAAGGCCAG
1 TTCAAGGCCAGCT-ACATTGGACTT-AAGATAAAGGTGGCCAAATGCTGATT-A-TCAAGGCCAA
*
1385134 CATATGGACTTTGGAGG-GT-CAATGTTGCTGATTC-A
62 CATATGGACCTTGGAGGTGTCCAATG-TGCTGATTCAA
1385169 -TCAA-G-CAGCTTACATT-GACTTAAGATAAAGGTGGCCAAATGCTGA-T-TCAAGGACCAACG
1 TTCAAGGCCAGC-TACATTGGACTTAAGATAAAGGTGGCCAAATGCTGATTATCAAGG-CCAAC-
* *
1385228 GTATTGGACCTTGGAGGTTTCCAATGTGCTGATTCAA
63 ATA-TGGACCTTGGAGGTGTCCAATGTGCTGATTCAA
*
1385265 TTCAAGGCCAGCTACATTGGACTAAAGATAAAGGT-GCCAA
1 TTCAAGGCCAGCTACATTGGACTTAAGATAAAGGTGGCCAA
1385305 TGTGGCGTTT
Statistics
Matches: 118, Mismatches: 5, Indels: 26
0.79 0.03 0.17
Matches are distributed among these distances:
91 6 0.05
92 4 0.03
93 2 0.02
94 28 0.24
95 29 0.25
96 10 0.08
97 8 0.07
98 12 0.10
99 19 0.16
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (98 bp):
TTCAAGGCCAGCTACATTGGACTTAAGATAAAGGTGGCCAAATGCTGATTATCAAGGCCAACATA
TGGACCTTGGAGGTGTCCAATGTGCTGATTCAA
Found at i:1385308 original size:53 final size:50
Alignment explanation
Indices: 1385248--1385362 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 50
1385238 TTGGAGGTTT
1385248 CCAATGTGCTGATTCAATTCAAGGCCAGCTACATTGGA-CTAAAGATAAAGGTG
1 CCAATGTGCTGATT---TTCAAGGCCAG-TACATTGGATCTAAAGATAAAGGTG
* * *
1385301 CCAATGTGGC-G--TTTCACGGCCAGTAGATTGGATTTAAAGATAAAGGTG
1 CCAATGT-GCTGATTTTCAAGGCCAGTACATTGGATCTAAAGATAAAGGTG
*
1385349 CCAATATGCTGATT
1 CCAATGTGCTGATT
1385363 AAGCCAAAGC
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
47 10 0.19
48 31 0.58
50 1 0.02
51 1 0.02
53 8 0.15
54 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (50 bp):
CCAATGTGCTGATTTTCAAGGCCAGTACATTGGATCTAAAGATAAAGGTG
Found at i:1386471 original size:190 final size:194
Alignment explanation
Indices: 1386250--1386674 Score: 477
Period size: 190 Copynumber: 2.2 Consensus size: 194
1386240 TATTGGACTT
* *
1386250 GAGGTGCCAAGGTGCTGATTCAAGCCAGCTACATTGGACTTTACAGATAAGGAGTGCC-ATATGC
1 GAGGTGCCAATGTGCTGATTCAAGCCAGCTACATTGGACTTTAAAGATAA--AG-GCCAAT-TGC
* * *
1386314 -TGA-TTCCAA-A-G-CCGACGATATTGGA-TTAAAGGT-GCGATG-TGCTGATTCCAGGCCAGC
62 TTGATTTCAAAGAGGACCG-CGATATTGGATTTAAAGGTACCGATGCTGCTGATTCAAGGCCAGC
*
1386371 -TACATTTGGAC-TTAA-AGATAAAAGGTG-CAATATGTCCGGATTTCTATGG-CCAGCG-TATT
126 TTACA-TTGGACGTTAAGAGAT-AAAGGTGCCAATATG--CGGA-TTC-AAGGACCAGCGATATT
*
1386430 GGAATTCGTG
185 GGAATTCGAG
*
1386440 GAGGTGCCAATGTGCTGATTCAAGGCAGCTACATTGGACTTTAAAGATAAAGGCCAATTGCTTGA
1 GAGGTGCCAATGTGCTGATTCAAGCCAGCTACATTGGACTTTAAAGATAAAGGCCAATTGCTTGA
1386505 TTTCAAAGGAGGACCGCGATATTGGATTTAAAGGTACCGATGCTGCTGATTCAAGGCCAGCTTAC
66 TTTCAAA-GAGGACCGCGATATTGGATTTAAAGGTACCGATGCTGCTGATTCAAGGCCAGCTTAC
* * * *
1386570 ATTGGACGTTAAGTGATAAAGGTGCCAATATGCTGATTCAAGGCAACCAGCGATATTGGACTTTG
130 ATTGGACGTTAAGAGATAAAGGTGCCAATATGCGGATTCAAGG--ACCAGCGATATTGGAATTCG
1386635 AG
193 AG
* *
1386637 G-TGTGCCAATGTGCTGATTCAAGTCAAGCTACATTGGA
1 GAGGTGCCAATGTGCTGATTCAAG-CCAGCTACATTGGA
1386675 TTAAAGCAAA
Statistics
Matches: 201, Mismatches: 15, Indels: 31
0.81 0.06 0.13
Matches are distributed among these distances:
187 6 0.03
188 7 0.03
189 5 0.02
190 47 0.23
191 1 0.00
192 11 0.05
193 14 0.07
194 8 0.04
195 26 0.13
196 42 0.21
197 34 0.17
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (194 bp):
GAGGTGCCAATGTGCTGATTCAAGCCAGCTACATTGGACTTTAAAGATAAAGGCCAATTGCTTGA
TTTCAAAGAGGACCGCGATATTGGATTTAAAGGTACCGATGCTGCTGATTCAAGGCCAGCTTACA
TTGGACGTTAAGAGATAAAGGTGCCAATATGCGGATTCAAGGACCAGCGATATTGGAATTCGAG
Found at i:1386528 original size:98 final size:91
Alignment explanation
Indices: 1386033--1387038 Score: 440
Period size: 92 Copynumber: 10.6 Consensus size: 91
1386023 AAGAATGATG
* * * *
1386033 GCTGATTCAAGGCCAGTG-TATTGGAACTTGGAGGTGCCAATGTGCTCGATTCAATGGCCAGCT-
1 GCTGATTCAAAGCCAGCGATATTGG-ATTTAGAGGTGCCAATGTGCT-GATTCAA-GG-CAGCTA
*
1386096 CATTGGA--TTAAACGATAAAGGTGCCAAGAT
62 CATTGGACTTTAAA-GATAAA-GTGCCAATAT
* * * * **
1386126 GCTGATT-AAAGGACAGCG-TATTGG-CTTGGAGGAAGCCAATGTGCTGATTCAACAAACCAGCT
1 GCTGATTCAAA-GCCAGCGATATTGGATTTAGAGG-TGCCAATGTGCTGATT---CAAGGCAGCT
* * *
1386188 ATATTGTACTGTAAATGATAAAGTTG-CAATAT
61 ACATTGGACTTTAAA-GATAAAG-TGCCAATAT
* * * *
1386220 GCGGGATTC-AAGCCTAGAC-ATATTGGACTT-GAGGTGCCAAGGTGCTGATTCAAGCCAGCTAC
1 GC-TGATTCAAAGCC-AG-CGATATTGGATTTAGAGGTGCCAATGTGCTGATTCAAGGCAGCTAC
*
1386282 ATTGGACTTTACAGATAAGGAGTGCC-ATAT
63 ATTGGACTTTAAAGATAA--AGTGCCAATAT
* * *
1386312 GCTGATTCCAAAGCC-GACGATATTGGA-TTAAAGGTG-CGATGTGCTGATTCCAGGCCAGCTAC
1 GCTGATT-CAAAGCCAG-CGATATTGGATTTAGAGGTGCCAATGTGCTGATTCAAGG-CAGCTAC
1386374 ATTTGGAC-TTAAAGATAAAAGGTG-CAATAT
63 A-TTGGACTTTAAAGAT-AAA-GTGCCAATAT
* ** *
1386404 GTCCGGATTTCTATGGCCAGCG-TATTGGAATTCGTGGAGGTGCCAATGTGCTGATTCAAGGCAG
1 G--CTGA-TTC-AAAGCCAGCGATATTGG-ATT--TAGAGGTGCCAATGTGCTGATTCAAGGCAG
1386468 CTACATTGGACTTTAAAGATAAAG-GCCAAT-T
59 CTACATTGGACTTTAAAGATAAAGTGCCAATAT
* * *
1386499 GCTTGATTTCAAAGGAGGACC-GCGATATTGGATTTAAAGGTACCGATGCTGCTGATTCAAGGCC
1 GC-TGA-TTC-AA--A-G-CCAGCGATATTGGATTTAGAGGTGCCAATG-TGCTGATTCAAGG-C
* *
1386563 AGCTTACATTGGACGTTAAGTGATAAAGGTGCCAATAT
57 AGC-TACATTGGACTTTAA-AGATAAA-GTGCCAATAT
* *
1386601 GCTGATTCAAGGCAACCAGCGATATTGGACTTT-GAGGTGTGCCAATGTGCTGATTCAAGTCAAG
1 GCTGATTCAA---AGCCAGCGATATTGGA-TTTAGA-G-GTGCCAATGTGCTGATTCAAGGC-AG
1386665 CTACATTGGA--TTAAAGCA-AAAGGTG-CAATAAT
59 CTACATTGGACTTTAAAG-ATAAA-GTGCCAAT-AT
* * *
1386697 GCTGATT-AAAGGCCCAGCG-TACTATGGACTTGGACGGTGGGCACAA-GTGCTGATTCAAAGCC
1 GCTGATTCAAA-G-CCAGCGATA-T-TGGATTTAGA-GGT--GC-CAATGTGCTGATTC-AAGGC
* *
1386759 AGCTATATTGTAC-TTAAAGAATAAAGGGTGCCAATGAAT
57 AGCTACATTGGACTTTAAAG-ATAAA--GTGCCAAT--AT
* ** * * * * *
1386798 GCTGATTCAAGGGTATGC-ATATGTGGACTTGGAGGTGCCCAATCTGCTGATT-TACGCAGCTTA
1 GCTGATTCAAAGCCA-GCGATAT-TGGATTTAGAGGTG-CCAATGTGCTGATTCAAGGCAGC-TA
*
1386861 CAATT-GAC-TTAAAGAGAAAGGTG-CAATAT
62 C-ATTGGACTTTAAAGATAAA-GTGCCAATAT
* * * * *
1386890 GC-GATAT-ACAGGCCAACGAAATTGAGACTTGGAAGGTGCCAA-GTGCTGATTC-AGGCCAGCT
1 GCTGAT-TCA-AAGCCAGCGATATTG-GATTTAG-AGGTGCCAATGTGCTGATTCAAGG-CAGCT
1386951 ACATTGGA-TTTAAAAGAT-AAGTGCACAATAT
61 ACATTGGACTTT-AAAGATAAAGTGC-CAATAT
** * * *
1386982 GCTGATGAAAGAAGGCCCGCGATATTGGACTTGGA-GTGTCCAGATGTGCTGATTCAA
1 GCTGAT-TCA-AA-GCCAGCGATATTGGATTTAGAGGTG-CCA-ATGTGCTGATTCAA
1387039 ACCCAGCTAT
Statistics
Matches: 730, Mismatches: 83, Indels: 197
0.72 0.08 0.20
Matches are distributed among these distances:
90 6 0.01
91 68 0.09
92 127 0.17
93 54 0.07
94 55 0.08
95 93 0.13
96 80 0.11
97 56 0.08
98 61 0.08
99 53 0.07
100 41 0.06
101 31 0.04
102 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (91 bp):
GCTGATTCAAAGCCAGCGATATTGGATTTAGAGGTGCCAATGTGCTGATTCAAGGCAGCTACATT
GGACTTTAAAGATAAAGTGCCAATAT
Found at i:1386709 original size:96 final size:95
Alignment explanation
Indices: 1385298--1387069 Score: 730
Period size: 96 Copynumber: 18.5 Consensus size: 95
1385288 AAAGATAAAG
* * * *
1385298 GTGCCAATGTGGC-GTTTCACGGCCAG-TAGATTGGATTTAAAGATAAAGGTGCCAATATGCTGA
1 GTGCCAATGT-GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTG-CAATATGCTGA
*
1385361 TT-AAGCCAAAGCCAGCGCATATTGGACTTGGA-G-
64 TTAAAG--GAA-CCAGCG-ATATTGGACTTGGAGGT
* * * * *
1385394 GTGCCAAGGTTGCTGATTCAA-ACCAGTCTATA-TGTACTTAATGA-AAAGGTGCCACAATAATG
1 GTGCCAATG-TGCTGATTCAAGGCCAG-CTACATTGGACTTAAAGATAAAGGTG---CAAT-ATG
* * *
1385456 CTGA-T-CAGG--CTAGCAATATTGGAC--GGA-GT
60 CTGATTAAAGGAACCAGCGATATTGGACTTGGAGGT
* * *
1385485 -TG-CAATCTGCTGATGTCAAGGCCAGCTACAATGTGACTTAAAGAGAAAGGTGCCAATATGCTG
1 GTGCCAATGTGCTGAT-TCAAGGCCAGCTACATTG-GACTTAAAGATAAAGGTG-CAATATGCTG
* * * *
1385548 ATTCAAGG-CCCAACGATATATTGGAGACATTGGAGGC
63 ATTAAAGGAACCAGCG--ATATT-G-GAC-TTGGAGGT
* * * *
1385585 GATGCCAATGTGCTGATTCAAGGCACA-TTACATTGTATTTAAAGATAAAGGTGGCCAACAATGC
1 G-TGCCAATGTGCTGATTCAAGGC-CAGCTACATTGGACTTAAAGATAAAGGT-G-CAA-TATGC
* * * **
1385649 TGATTAAAGGCAGC-GAGACTATTGGGA-TTGGATGCCA
61 TGATTAAAGGAACCAGCGA-TATT-GGACTTGGA-G-GT
*** * ** * * *
1385686 ACCCCTATGTGCTGATTCAAAACCAGCTATATTTGTCACTTAATG-T--AGGATGCCCAAT-TAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACA-TTG-GACTTAAAGATAAAGG-TG--CAATAT-G
* *
1385747 CTGATTCAAAGG--CTTAGCCAGTATTGGACCTTGGA-G-
60 CTGATT-AAAGGAAC-CAGCGA-TATTGGA-CTTGGAGGT
1385783 GTGCCAATGTGCTGATTCAAGGCCAGCTA-ATTAGGACTT-AAGAGTAAAGGTGCAATATGCTGA
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATT-GGACTTAAAGA-TAAAGGTGCAATATGCTGA
* * *
1385846 TTCAAGG-ACCGAATCGGTATTGGACTTGGAGGT
64 TTAAAGGAACC--AGCGATATTGGACTTGGAGGT
* * *
1385879 GGGGCC-ATGTGCTGATTCCAAGGCCAGCTACATTGGAC-T-----TAAA-GTGCCATATGCTGG
1 -GTGCCAATGTGCTGATT-CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCAATATGCTGA
* * * *
1385936 TT-CAGG--CTAGCGGTATTAGACTTGGAGGT
64 TTAAAGGAACCAGCGATATTGGACTTGGAGGT
**
1385965 GCCACCAATGGTGCTGCATTCAAGGCCCAGCTACA-TGGCAC-TAAAGATAAAGGTGCCAAAGAA
1 G-TGCCAAT-GTGCTG-ATTCAAGG-CCAGCTACATTGG-ACTTAAAGATAAAGGTG-C----AA
* *
1386028 TGATGGCTGATTCAAGG--CCAGTG-TATTGGAACTTGGA-G-
56 T-AT-GCTGATTAAAGGAACCAGCGATATTGG-ACTTGGAGGT
*
1386066 GTGCCAATGTGCTCGATTCAATGGCCAGCT-CATTGGA-TTAAACGATAAAGGTGCCAAGATGCT
1 GTGCCAATGTGCT-GATTCAA-GGCCAGCTACATTGGACTTAAA-GATAAAGGTG-CAATATGCT
1386129 GATTAAAGG-A-CAGCG-TATTGG-CTTGGAGG-
62 GATTAAAGGAACCAGCGATATTGGACTTGGAGGT
** ** * * *
1386158 AAGCCAATGTGCTGATTCAACAAACCAGCTATATTGTACTGTAAATGATAAAGTTGCAATATGCG
1 GTGCCAATGTGCTGATTC-A-AGGCCAGCTACATTGGACT-TAAA-GATAAAGGTGCAATATGC-
* *
1386223 GGATTCAA-G--CCTAGAC-ATATTGGACTT-GA-G-
61 TGATTAAAGGAACC-AG-CGATATTGGACTTGGAGGT
* * * *
1386253 GTGCCAAGGTGCTGATTCAA-GCCAGCTACATTGGACTTTACAGATAAGGAGTGCCATATGCTGA
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-TTAAAGATAAAG-GTGCAATATGCTGA
* *
1386317 TTCCAAA-G--CC-GACGATATTGGA-TT-AAAG-
64 TT--AAAGGAACCAG-CGATATTGGACTTGGAGGT
* * *
1386345 GTG-CGATGTGCTGATTCCAGGCCAGCTACATTTGGACTTAAAGATAAAAGGTGCAATATGTCCG
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACA-TTGGACTTAAAGAT-AAAGGTGCAATATG--CT
* * * * * *
1386409 GATTTCTATGG--CCAGCG-TATTGGAATTCGTGGAG
62 GA-TT-AAAGGAACCAGCGATATTGGACTTGGAGG-T
*
1386443 GTGCCAATGTGCTGATTCAAGG-CAGCTACATTGGACTTTAAAGATAAAGG-CCAAT-TGCTTGA
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-TTAAAGATAAAGGTGCAATATGC-TGA
** *
1386505 TTTCAAAGGAGGACC-GCGATATTGGA-TTTAAAG-
64 -TT-AAAGGA--ACCAGCGATATTGGACTTGGAGGT
* * *
1386538 GTACCGATGCTGCTGATTCAAGGCCAGCTTACATTGGACGTTAAGTGATAAAGGTGCCAATATGC
1 GTGCCAATG-TGCTGATTCAAGGCCAGC-TACATTGGAC-TTAA-AGATAAAGGTG-CAATATGC
* *
1386603 TGATTCAAGGCAACCAGCGATATTGGACTTTGAGGT
61 TGATTAAAGG-AACCAGCGATATTGGACTTGGAGGT
* *
1386639 GTGCCAATGTGCTGATTCAAGTCAAGCTACATTGGA-TTAAAGCA-AAAGGTGCAATAATGCTGA
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-ATAAAGGTGCAAT-ATGCTGA
*
1386702 TTAAAGG-CCCAGCG-TACTATGGACTTGGACGGT
64 TTAAAGGAACCAGCGATA-T-TGGACTTGGA-GGT
* * * *
1386735 GGGCACAA-GTGCTGATTCAAAGCCAGCTATATTGTACTTAAAGAATAAAGGGTGCCAATGAATG
1 GTGC-CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-ATAAA-GGTG-CAAT--ATG
* * *
1386799 CTGATTCAAGGGTA--TGC-ATATGTGGACTTGGAGGT
60 CTGATT-AAAGGAACCAGCGATAT-TGGACTTGGAGGT
* * * * *
1386834 G-CCCAATCTGCTGATT-TACG-CAGCTTACAATT-GACTTAAAGAGAAAGGTGCAATATGC-GA
1 GTGCCAATGTGCTGATTCAAGGCCAGC-TAC-ATTGGACTTAAAGATAAAGGTGCAATATGCTGA
* * * *
1386894 TATACAGG--CCAACGAAATTGAGACTTGGAAG-
64 T-TAAAGGAACCAGCGATATTG-GACTTGGAGGT
*
1386925 GTGCCAA-GTGCTGATTC-AGGCCAGCTACATTGGATTTAAAAGAT-AA-GTGCACAATATGCTG
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATAAAGGTG--CAATATGCTG
* *
1386986 ATGAAA-GAAGGCCCGCGATATTGGACTTGGA-GT
63 ATTAAAGGAA--CCAGCGATATTGGACTTGGAGGT
** * *
1387019 GT-CCAGATGTGCTGATTCAAACCCAGCTATATTGGTACTTAATGATAAAGG
1 GTGCCA-ATGTGCTGATTCAAGGCCAGCTACATTGG-ACTTAAAGATAAAGG
1387070 AAAAAAGTGC
Statistics
Matches: 1309, Mismatches: 191, Indels: 350
0.71 0.10 0.19
Matches are distributed among these distances:
85 1 0.00
86 21 0.02
87 2 0.00
88 22 0.02
89 36 0.03
90 37 0.03
91 85 0.06
92 141 0.11
93 57 0.04
94 77 0.06
95 123 0.09
96 147 0.11
97 119 0.09
98 85 0.06
99 119 0.09
100 87 0.07
101 57 0.04
102 51 0.04
103 41 0.03
104 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (95 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCAATATGCTGATT
AAAGGAACCAGCGATATTGGACTTGGAGGT
Found at i:1444428 original size:21 final size:21
Alignment explanation
Indices: 1444404--1444471 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
1444394 CTTAATGATA
1444404 AAGGTGCCAATATGTTGATTC
1 AAGGTGCCAATATGTTGATTC
* *
1444425 AAGGCTAG-CAATAT-TGGACTTG
1 AAGG-T-GCCAATATGTTGA-TTC
* * *
1444447 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGTTGATTC
1444468 AAGG
1 AAGG
1444472 CCAGCTACAA
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
20 1 0.03
21 18 0.53
22 14 0.41
23 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (21 bp):
AAGGTGCCAATATGTTGATTC
Found at i:1444537 original size:92 final size:90
Alignment explanation
Indices: 1443904--1459304 Score: 11792
Period size: 92 Copynumber: 166.2 Consensus size: 90
1443894 ACTTAATGAT
*
1443904 AAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTTG--GAGGTGCCAATGTGCTGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGTAAAGGTGCCAATGTGCTGA
1443966 TTCAAGG-CAGCTACATTGGACTTAAAG
65 TTCAAGGCCAGCTACATTGGACTT--AG
* * *
1443993 ATAAAGGTGCCAATATGCTGA-TCAAGGACAGCGGTGGTATTGGACTTG--GAGGTGCCAATGTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGC---GATATTGGACTTGTAAAGGTGCCAATGTG
*
1444055 CTGATTCAAGGCCAGCTATATTGGACTT--
61 CTGATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1444083 AAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTG--GAGGTTGCCAATGTGCTGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGG-TGCCAATGTGCTGA
*
1444146 TTCAAGGCCAGCTACATTGCACTTAAAG
65 TTCAAGGCCAGCTACATTGGACTT--AG
*
1444174 ATAAAGGTGCC-ATATG--GATTC-AGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1444233 ATTCAAGG-CAGCTACATTGGACTTAAG
64 ATTCAAGGCCAGCTACATTGGACTT-AG
* * * * *
1444260 ATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAG-ATAAGGTGCCAATAT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---GTA-AAGGTGCCAATGT
* * *
1444324 GCTGATTTAAGGCCAGCGATATTGGACTT-G
60 GCTGATTCAAGGCCAGCTACATTGGACTTAG
* * ** * * * *
1444354 -GAGGTGCCAATGTGCTGATTCAAAAACCAGCTATTTTGTACTTAATGATAAAGGTGCCAATATG
1 AAAGGTGCCAATATGCTGATTC-AAGGCCAGCGATATTGGAC-T--TG-TAAAGGTGCCAATGTG
* * * *
1444418 TTGATTCAAGGCTAGCAATATTGGACTT-G
61 CTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1444447 -GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* * * *
1444511 TGATTCAAGGACAACGATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * *
1444539 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *** *
1444603 TGATTCAAGGCCAACGGTATTGGACTTTG
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1444632 --AGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* *
1444695 TGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
59 TGCTGATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1444729 ATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** * * * *
1444794 CATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGG
57 TGTGCTGATTCAAGGCCAGCTACATTGGA-CT-TA-G
* * ** *
1444831 TGAAGGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAAT
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAAT
* * * *
1444896 ATGCTGATTCAAGGCCAGCGATATTGGAGTTAAAG
58 GTGCTGATTCAAGGCCAGCTACATTGGACTT--AG
** * * * ** *
1444931 ATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** *
1444996 CATGCTGATTCAAGGCCAGCGACATTGGACTT--
57 TGTGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1445028 AAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* * *
1445093 TGCTAATTCAAGGCCAGCGATATTGGACTT--
59 TGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1445123 AAAGATGCCAATGTGCTGATTCTAGGCCAGCAACATTGGTC-T-TAAAGGTGCCGATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
1445186 TCAAGGCCAGCTACATTGGACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
*
1445213 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* *
1445275 GATTCAAGACCAGCTACATTGGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1445305 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1445368 ATTCAAGGCCAGCTACATTGGACTTAAATAT
64 ATTCAAGGCCAGCTACATTGGAC-T---TAG
* * *
1445399 AAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGTGCTGCT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
1445462 TCAAGGCCAGCTACATTGGACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
* * * *
1445489 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTT-T-GAGGTGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1445552 AATCAAGGCCAGCTACATTGGACTTAAAGATG
64 ATTCAAGGCCAGCTACATTGGACTT----A-G
* * *
1445584 ACAAAGGCGCCAATATGCTGATTCAAGGGCAGCGATATTGGACTTG--GAGGTGCCAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* *
1445646 GATTCAAGACCAGCTACATTGGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1445676 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1445739 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1445768 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1445831 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* * * *
1445860 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1445923 ATTCAAGGCCAGCTACAATGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1445952 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
* *
1446015 ATTCAAGGCCAGCAACATTGGTCTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * * *
1446040 AAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *
1446105 TGATTCAAGGCCAGCGATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * * *
1446133 -GAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAAGATAAAGGTACCAATATG
1 AAAGGTGCCAATATGC-TGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTG
* * * * *
1446196 CTGATTCAAAGCCAGCGATATTAGA-TT-T
61 CTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1446224 AAAGATGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
*
1446289 TGATTCAAGGCCAGC-AGTATTGGACTT-G
62 TGATTCAAGGCCAGCTA-CATTGGACTTAG
* * * * *
1446317 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* ***
1446381 TGATTCAAGGACAGCGGTATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1446409 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *
1446473 TGATTCAAGGCCAGCTAGATTGGATTTAAAG
62 TGATTCAAGGCCAGCTACATTGGACTT--AG
* *
1446504 ATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1446567 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* * * *
1446596 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1446659 ATTCAAGGCCAGCTACAATGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1446688 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
* *
1446751 ATTCAAGGCCAGCAACATTGGTCTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * * *
1446776 AAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *
1446841 TGATTCAAGGCCAGCGATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * * *
1446869 -GAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAAGATAAAGGTACCAATATG
1 AAAGGTGCCAATATGC-TGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTG
* * * * *
1446932 CTGATTCAATGCCAGCGATATTAGA-TT-T
61 CTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1446960 AAAGATGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
*
1447025 TGATTCAAGGCCAGC-AGTATTGGACTT-G
62 TGATTCAAGGCCAGCTA-CATTGGACTTAG
* * * * *
1447053 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* ***
1447117 TGATTCAAGGACAGCGGTATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1447145 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *
1447209 TGATTCAAGGCCAGCTAGATTGGATTTAAAG
62 TGATTCAAGGCCAGCTACATTGGACTT--AG
* *
1447240 ATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1447303 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* * * *
1447332 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1447395 ATTCAAGGCCAGCTACAATGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1447424 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
* *
1447487 ATTCAAGGCCAGTTACATTGGATTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1447516 ATAAAGGTGCCAAAATGCTGATTAAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1447579 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* *
1447608 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGC-AGTATTGGACTTG--GAGGTGCCAATGTGCT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGTAAAGGTGCCAATGTGCT
1447670 GATTCAAGGCCAGCTACATTGGACTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1447700 ATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1447763 ATTCAAGGCCAGCTACATTGGACTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * * *
1447788 AAAGGTGCCAATATGCTGGTTCAAGGCTAGCGGTATTAGACTTG--GAGGTGCCAATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
*
1447851 TCAAGGCCAGCTACATTGCACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
* *
1447878 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1447941 ATTCAAGGCCAGCTACATTGGATTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * *
1447970 ATAAAGGTGCCAATATGCTGATTAAAGGACAGCGATATTGGACTTG--GAGGAGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1448033 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* * *
1448062 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1448125 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1448154 ATAAAGGTGCCAATATGCTGATTCAAAGCCAGCGATATTGGA-TT-TAAAGGTGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1448217 ATTCCAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1448246 ATAAAGGTG-CAATATGCTGATTTCTAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCT
1 --AAAGGTGCCAATATGCTGA-TTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCT
1448308 GATTCAAGGCCAGCTACATTGGACTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1448338 ATAAAGGTGCCAATATGCTGATTCAAGGACAGCGATATTGGA-TT-TAAAGGTACCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1448401 ATTCAAGGCCAGCTACATTGGACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
*
1448430 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1448493 ATTCAAGGCCAGCTACATTGGATTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1448522 ATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1448585 ATTCAAAACCAGCTATATTGTACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
** * * *
1448614 ATAAAGGTGCCAATATGCTGATTCAAGGGTAGCAATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
* *
1448677 ATTTAAGGCCAGCTACAATGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1448706 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1448769 ATTCAAGGCCAGCTACATTGGATTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1448798 ATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1448861 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
*
1448890 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTTG--GAGGTGCCAATGTGCT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGTAAAGGTGCCAATGTGCT
1448952 GATTCAAGGCCAGCTACATTGGACTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * *
1448982 ATAAAGGTGCCAATATGCTGATTCAAGGACAACGGTATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1449045 ATTCAAGGCCAGCTACATTGGACTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1449070 AAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTG--GAGGTGCCAATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
*
1449133 TCAAGGCCAGCTACATTGCACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
*
1449160 ATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1449223 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * * *
1449252 ATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGATTTAAAGATAAAGGTGCCAATAT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGT
* * *
1449317 GCTGATTTAAGGCCAGCGATATTGGACTT-G
60 GCTGATTCAAGGCCAGCTACATTGGACTTAG
* * ** * * * *
1449347 -GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG-TAAAGGTGCCAATGTGC
* * *
1449411 TGATTCAAGGCTAGCAATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1449439 -GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* * *
1449503 TGATTCAAGGCCAACGATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * *
1449531 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *** *
1449595 TGATTCAAGGCCAACGGTATTGGACTTTG
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1449624 --AGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* *
1449687 TGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
59 TGCTGATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1449721 ATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** * * * *
1449786 CATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGG
57 TGTGCTGATTCAAGGCCAGCTACATTGGA-CT-TA-G
* * ** *
1449823 TGAAGGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAAT
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAAT
* * * *
1449888 ATGCTGATTCAAGGCCAGCGATATTGGAGTTAAAG
58 GTGCTGATTCAAGGCCAGCTACATTGGACTT--AG
** * * * ** *
1449923 ATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** *
1449988 CATGCTGATTCAAGGCCAGCGACATTGGACTT--
57 TGTGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1450020 AAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* *
1450085 TGCTGATTCAAGGCCAGCGATATTGGACTT--
59 TGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1450115 AAAGATGCCAATGTGCTGATTCTAGGCCAGCAACATTGGTC-T-TAAAGGTGCCGATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
1450178 TCAAGGCCAGCTACATTGGACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
*
1450205 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* * *
1450267 GATTCAAGACCAGCTACATTTGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1450297 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1450360 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1450389 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1450452 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * *
1450481 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTT-T-GAGGTGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1450544 AATCAAGGCCAGCTACATTGGACTTAAAGATG
64 ATTCAAGGCCAGCTACATTGGACTT----A-G
* *
1450576 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* *
1450638 GATTCAAGACCAGCTACATTGGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1450668 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1450731 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1450760 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1450823 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* * * *
1450852 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1450915 ATTCAAGGCCAGCTACAATGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1450944 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
* *
1451007 ATTCAAGGCCAGCAACATTGGTCTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * * *
1451032 AAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *
1451097 TGATTCAAGGCCAGCGATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * * *
1451125 -GAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAAGATAAAGGTACCAATATG
1 AAAGGTGCCAATATGC-TGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTG
* * * * *
1451188 CTGATTCAATGCCAGCGATATTAGA-TT-T
61 CTGATTCAAGGCCAGCTACATTGGACTTAG
* ** * * * *
1451216 AAAGATGCCGTTGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *
1451281 TGATTCAAGGCCAGC-AGTATTGGAGTT-G
62 TGATTCAAGGCCAGCTA-CATTGGACTTAG
* * * * * *
1451309 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* ***
1451373 TGATTCAAGGACAGCGGTATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1451401 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *
1451465 TGATTCAAGGCCAGCTAGATTGGATTTAAAG
62 TGATTCAAGGCCAGCTACATTGGACTT--AG
* *
1451496 ATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1451559 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* * * *
1451588 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1451651 ATTCAAGGCCAGCTACAATGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1451680 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1451743 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
*
1451772 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTTG--GAGGTGCCAATGTGCT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGTAAAGGTGCCAATGTGCT
1451834 GATTCAAGGCCAGCTACATTGGACTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * **
1451864 ATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTG--GCGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1451927 ATTCAAGGCCAGCTACATTGGACTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1451952 AAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTG--GAGGTGCCAATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
*
1452015 TCAAGGCCAGCTACATTGCACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
1452042 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTTG--AAGGTGCCAATGTGCT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGTAAAGGTGCCAATGTGCT
1452104 GATTCAAGGCCAGCTACATTGGACTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1452134 ATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1452197 ATTCAAGGCCAGCTACATTGGACTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * *
1452222 AAAGGTGCCAATATGCTGGTTCAAGGCCAGC-AGTATTAGACTTG--GAGGTGCCAATGTGCTGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGTAAAGGTGCCAATGTGCTGA
* *
1452284 TTCAAGGCCTGCTACATTGCACTTAAAG
65 TTCAAGGCCAGCTACATTGGACTT--AG
*
1452312 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1452375 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1452404 ATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAGATTGGATTTAAAGATAAAGGTGCCAATAT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGT
* * * *
1452469 GCTGAATAAAGGCCAGCGATATTGGACTT-G
60 GCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1452499 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
*
1452563 TGATTCAAGGCCAGC-AGTATTGGACTT-G
62 TGATTCAAGGCCAGCTA-CATTGGACTTAG
* * * *
1452591 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* ***
1452655 TGATTCAAGGACAGCGGTATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1452683 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-TAAAGGTGCCAATATGCTGGT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
*** *
1452745 TCAAGGCCAGCGGTATTAGACTT-G
66 TCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1452769 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
*
1452833 TGATTCAAGGCCAG-TGATATTGGACTT-G
62 TGATTCAAGGCCAGCT-ACATTGGACTTAG
* * * * *
1452861 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *** *
1452925 TGATTCAAGGCCAACGGTATTGGACTTTG
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1452954 --AGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* *
1453017 TGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
59 TGCTGATTCAAGGCCAGCTACATTGGACTT--AG
* * * ** *
1453051 ATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACGTTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** * * *
1453116 CATGCTAATTCAAGGCCAG-TGATATTGGACCTAAAGG
57 TGTGCTGATTCAAGGCCAGCT-ACATTGGA-CT-TA-G
* * ** *
1453153 TGAAGGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAAT
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAAT
* * * *
1453218 ATGCTGATTCAAGGCCAGCGATATTGGAGTTAAAG
58 GTGCTGATTCAAGGCCAGCTACATTGGACTT--AG
** * * * ** *
1453253 ATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** *
1453318 CATGCTGATTCAAGGCCAGCGACATTGGACTT--
57 TGTGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1453350 AAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGATGATAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TG-TAAAGGTGCCAATG
* *
1453415 TGCTGATTCAAGGCCAGCGATATTGGACTT--
59 TGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1453445 AAAGATGCCAATGTGCTGATTCTAGGCCAGCAACATTGGTC-T-TAAAGGTGCCGATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
1453508 TCAAGGCCAGCTACATTGGACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
*
1453535 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* *
1453597 GATTCAAGACCAGCTACATTGGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
** * * * **
1453627 ATAAAGGAACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCTGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1453690 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1453719 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATATGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1453782 ATTCAAGGCTAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1453811 ATAAAGGTGCCAATATGCTGATTTAAGGCGAGTGATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1453874 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1453903 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGGCAATGTGCGG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1453966 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1453995 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1454058 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * * *
1454087 ATAAAGTTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1454150 ATTCAAGGCCAGCTACATTAGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1454179 ATAAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATATGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1454242 ATTCAAGGCTAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * *
1454271 ATAAAGGTGCCAATATGCTGATTTAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1454334 ATTCAAGGCCAGCGACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1454363 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGGCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1454426 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1454455 ATAAAGGTACCAATATGCTGATTCAATGCTAGCGATATTAGA-TT-TAAAGATGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1454518 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * *
1454547 ATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTG--GAGGTTCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1454610 ATTCAGGGCCAGCTACATTGGACTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1454635 AAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTG--GAGGTGCCAATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
*
1454698 TCAAGGCCAGCTACATTGCACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
*
1454725 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1454788 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1454817 ATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATAT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGT
* * *
1454882 GCTGATTTAAGGCCAGCGATATTGGACTT-G
60 GCTGATTCAAGGCCAGCTACATTGGACTTAG
* * ** * * * *
1454912 -GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG-TAAAGGTGCCAATGTGC
* * *
1454976 TGATTCAAGGCTAGCAATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1455004 -GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* * *
1455068 TGATTCAAGGCCAACGATATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * *
1455096 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *** *
1455160 TGATTCAAGGCCAACGGTATTGGACTTTG
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1455189 --AGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* *
1455252 TGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
59 TGCTGATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1455286 ATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** * * * *
1455351 CATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGG
57 TGTGCTGATTCAAGGCCAGCTACATTGGA-CT-TA-G
* * ** *
1455388 TGAAGGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAAT
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAAT
* * * *
1455453 ATGCTGATTCAAGGCCAGCGATATTGGAGTTAAAG
58 GTGCTGATTCAAGGCCAGCTACATTGGACTT--AG
** * * * ** *
1455488 ATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** *
1455553 CATGCTGATTCAAGGCCAGCGACATTGGACTT--
57 TGTGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1455585 AAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* *
1455650 TGCTGATTCAAGGCCAGCGATATTGGACTT--
59 TGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1455680 AAAGATGCCAATGTGCTGATTCTAGGCCAGCAACATTGGTC-T-TAAAGGTGCCGATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
1455743 TCAAGGCCAGCTACATTGGACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
* *
1455770 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* *
1455832 GATTCAAGACCAGCTACATTGGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1455862 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1455925 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1455954 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1456017 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * *
1456046 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTT-T-GAGGTGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1456109 AATCAAGGCCAGCTACATTGGACTTAAAGATG
64 ATTCAAGGCCAGCTACATTGGACTT----A-G
* * *
1456141 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGACAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* *
1456203 GATTCAAGACCAGCTACATTGGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * ** *
1456233 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGAAGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1456296 ATTCAAGGCCAGCTACATTGGA-TTCAAAG
64 ATTCAAGGCCAGCTACATTGGACTT---AG
* *
1456325 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
** * *
1456388 ATTCAAAACCAGCTATATTGTACTTAATG
64 ATTCAAGGCCAGCTACATTGGACTT-A-G
* * * *
1456417 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1456480 ATTCAAGGCCAGCTACAATGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1456509 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1456572 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
*
1456601 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTTG--GAGGTGCCAATGTGCT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGTAAAGGTGCCAATGTGCT
1456663 GATTCAAGGCCAGCTACATTGGACTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1456693 ATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1456756 ATTCAAGGCCAGCTACATTGGACTT--
64 ATTCAAGGCCAGCTACATTGGACTTAG
* * * *
1456781 AAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTG--GAGGTGCCAATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
*
1456844 TCAAGGCCAGCTACATTGCACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
*
1456871 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1456934 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1456963 ATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAGATTGGATTTAAAGATAAAGGTGCCAATAT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGT
* * *
1457028 GCTGATTAAAGGCCAGCGATATTGGACTT-G
60 GCTGATTCAAGGCCAGCTACATTGGACTTAG
* * ** * * *
1457058 -GAGGTGCCAATGTGCTGATTCAAAACCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
*
1457122 TGATTCAAGGCCAGC-AGTATTGGACTT-G
62 TGATTCAAGGCCAGCTA-CATTGGACTTAG
* * * * *
1457150 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* ***
1457214 TGATTCAAGGACAGCGGTATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
** * * * * *
1457242 -GCGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-TAAAGGTGCCAATATGCTGGT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
*** *
1457304 TCAAGGCCAGCGGTATTAGACTT-G
66 TCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1457328 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
*
1457392 TGATTCAAGGCCAGC-AGTATTGGACTT-G
62 TGATTCAAGGCCAGCTA-CATTGGACTTAG
* * * * *
1457420 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* ***
1457484 TGATTCAAGGACAGCGGTATTGGACTT-G
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1457512 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-TAAAGGTGCCAATATGCTGGT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
* *** *
1457574 TCAGGGCCAGCGGTATTAGACTT-G
66 TCAAGGCCAGCTACATTGGACTTAG
* * * * * *
1457598 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
*
1457662 TGATTCAAGGCCAG-TGATATTGGACTT-G
62 TGATTCAAGGCCAGCT-ACATTGGACTTAG
* * * * *
1457690 -GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-TAAAGGTGCCAATGTGC
* *** *
1457754 TGATTCAAGGCCAACGGTATTGGACTTTG
62 TGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1457783 --AGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAATG
* *
1457846 TGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
59 TGCTGATTCAAGGCCAGCTACATTGGACTT--AG
* * * * * *
1457880 ATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCTAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** * * *
1457945 CATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGG
57 TGTGCTGATTCAAGGCCAGCTACATTGGA-CT-TA-G
* * ** *
1457982 TGAAGGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAAT
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAAT
* * * *
1458047 ATGCTGATTCAAGGCCAGCGATATTGGAGTTAAAG
58 GTGCTGATTCAAGGCCAGCTACATTGGACTT--AG
** * * * ** *
1458082 ATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCATTGGACTTAAAGATGACAAAGGCGCCAA
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-T---AAAGGTGCCAA
** *
1458147 CATGCTGATTCAAGGCCAGCGACATTGGACTT--
57 TGTGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1458179 AAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGATGATAAAGGCGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TG-TAAAGGTGCCAATG
* *
1458244 TGCTGATTCAAGGCCAGCGATATTGGACTT--
59 TGCTGATTCAAGGCCAGCTACATTGGACTTAG
* * * * * * *
1458274 AAAGATGCCAATGTGCTGATTCTAGGCCAGCAACATTGGTC-T-TAAAGGTGCCGATGTGCTGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
1458337 TCAAGGCCAGCTACATTGGACTTAAAG
66 TCAAGGCCAGCTACATTGGACTT--AG
*
1458364 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATGT-CTT
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGC-T
* *
1458426 GATTCAAGACCAGCTACATTGGATTTAAAG
63 GATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1458456 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1458519 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1458548 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATATGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1458611 ATTCAAGGCTAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * *
1458640 ATAAAGGTGCCAATATGCTGATTTAAGGCCAGTGATATTGGACTTG--GAGGTGCCAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1458703 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1458732 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGGCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1458795 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1458824 ATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTTG--GAGGTGCCAATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1458887 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * * * *
1458916 ATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-TAAAGATGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1458979 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* *
1459008 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCCAATATGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1459071 ATTCAAGGCTAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1459100 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG--GAGGTGCTAATCTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
1459163 ATTCAAGGCCAGCTACATTGGACTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
* * *
1459192 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGGTATTGGACTTG--GAGGTGCCGATGTGCTG
1 --AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTG
*
1459255 ATTCAAGGCCAGCTACATTGGATTTAAAG
64 ATTCAAGGCCAGCTACATTGGACTT--AG
*
1459284 AGGAAGGTGCTAATATGCTGA
1 A--AAGGTGCCAATATGCTGA
1459305 AAAAAGTCCC
Statistics
Matches: 13616, Mismatches: 1230, Indels: 927
0.86 0.08 0.06
Matches are distributed among these distances:
86 1060 0.08
87 58 0.00
88 42 0.00
89 47 0.00
90 34 0.00
91 128 0.01
92 9383 0.69
93 202 0.01
94 31 0.00
95 1053 0.08
96 17 0.00
97 10 0.00
98 264 0.02
100 10 0.00
101 1262 0.09
102 15 0.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (90 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGTAAAGGTGCCAATGTGCTGAT
TCAAGGCCAGCTACATTGGACTTAG
Found at i:1445887 original size:21 final size:21
Alignment explanation
Indices: 1445863--1445930 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1445853 CTTAATGATA
1445863 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1445884 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1445906 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1445927 AAGG
1 AAGG
1445931 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1446623 original size:21 final size:21
Alignment explanation
Indices: 1446599--1446666 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1446589 CTTAATGATA
1446599 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1446620 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1446642 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1446663 AAGG
1 AAGG
1446667 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1447359 original size:21 final size:21
Alignment explanation
Indices: 1447335--1447402 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1447325 CTTAATGATA
1447335 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1447356 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1447378 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1447399 AAGG
1 AAGG
1447403 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1448089 original size:21 final size:21
Alignment explanation
Indices: 1448065--1448132 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1448055 CTTAATGATA
1448065 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1448086 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1448108 GAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1448129 AAGG
1 AAGG
1448133 CCAGCTACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1449420 original size:21 final size:21
Alignment explanation
Indices: 1449396--1449463 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
1449386 CTTAATGATA
1449396 AAGGTGCCAATATGTTGATTC
1 AAGGTGCCAATATGTTGATTC
* *
1449417 AAGGCTAG-CAATAT-TGGACTTG
1 AAGG-T-GCCAATATGTTGA-TTC
* * *
1449439 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGTTGATTC
1449460 AAGG
1 AAGG
1449464 CCAGCTACAA
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
20 1 0.03
21 18 0.53
22 14 0.41
23 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (21 bp):
AAGGTGCCAATATGTTGATTC
Found at i:1450879 original size:21 final size:21
Alignment explanation
Indices: 1450855--1450922 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1450845 CTTAATGATA
1450855 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1450876 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1450898 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1450919 AAGG
1 AAGG
1450923 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1451615 original size:21 final size:21
Alignment explanation
Indices: 1451591--1451658 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1451581 CTTAATGATA
1451591 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1451612 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1451634 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1451655 AAGG
1 AAGG
1451659 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1454985 original size:21 final size:21
Alignment explanation
Indices: 1454961--1455028 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
1454951 CTTAATGATA
1454961 AAGGTGCCAATATGTTGATTC
1 AAGGTGCCAATATGTTGATTC
* *
1454982 AAGGCTAG-CAATAT-TGGACTTG
1 AAGG-T-GCCAATATGTTGA-TTC
* * *
1455004 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGTTGATTC
1455025 AAGG
1 AAGG
1455029 CCAGCTACAA
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
20 1 0.03
21 18 0.53
22 14 0.41
23 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (21 bp):
AAGGTGCCAATATGTTGATTC
Found at i:1456444 original size:21 final size:21
Alignment explanation
Indices: 1456420--1456487 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1456410 CTTAATGATA
1456420 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1456441 AAGGCTAG-CAATAT--TGGACTTG
1 AAGG-T-GCCAATATGCT-GA-TTC
* *
1456463 GAGGTGCCAATCTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1456484 AAGG
1 AAGG
1456488 CCAGCTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.49
22 14 0.40
23 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1459284 original size:276 final size:276
Alignment explanation
Indices: 1443881--1459304 Score: 13990
Period size: 276 Copynumber: 55.5 Consensus size: 276
1443871 NNNNNNNAAA
* * *
1443881 CCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGAC
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGAC
1443945 TTGGAGGTGCCAATGTGCTGATTCAAGG-CAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
65 TTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
* *
1444009 GCTGA-TCAAGGACAGCGGTGGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
130 GCTGATTCAAGGCCAGC---GATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
* * * *
1444073 TATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGT
192 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGG-
1444132 TGCCAATGTGCTGATTCAAGG
256 TGCCAATGTGCTGATTCAAGG
*
1444153 CCAGCTACATTGCACTTAAAGATAAAGGTGCC-ATATG--GATTC-AGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
1444214 TGGAGGTGCCAATGTGCTGATTCAAGG-CAGCTACATTGGACTT-AAGATAAAGGTGCCAATGTG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * * * * *
1444277 CTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAGGTGCCAATATGCTGATTTAAGGCCAGCG
131 CTGATTCAAGGCCAGCGATATTGGACTT---G--GAGGTGCCAATGTGCTGATTCAAGGCCAGCT
* * * ** * * *
1444342 ATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAAAACCAGCTATTTTGTACTTAATG
191 ACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC-AAGGCCAGCGATATTGGAC-T--TG
* * *
1444401 ATAAAGGTGCCAATATGTTGATTCAAGG
252 ---GAGGTGCCAATGTGCTGATTCAAGG
* * * * * * * *
1444429 CTAGCAATATTGGACTT---G---GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * * * *
1444488 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAACGATATTGGACTT---G---GAGGTGCC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* * * * *
1444547 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
125 AATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAG
* *** * * * * * *
1444612 GCCAACGGTATTGGACTT-----T-GAGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGAC
184 GCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
1444671 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGG
249 TT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * * * *
1444708 CCAGCAATATTGGACTTAAAGATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* ** * * * * * *
1444773 TAAAGATGACAAAGGCGCCAACATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGGTGAAGGT
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* ** * *
1444838 GCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGA
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGGTGCCAATGTGCTGA
* * * * ** * * * **
1444903 TTCAAGGCCAGCGATATTGGAGTTAAAGATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCA
178 TTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* **
1444968 TTGGACTTAAAGATGACAAAGGCGCCAACATGCTGATTCAAGG
243 TTGGACTT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * *
1445011 CCAGCGACATTGGACTTAAAG----A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * *
1445070 TAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAG----A--T
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* * * * * ** *
1445129 GCCAATGTGCTGATTCTAGGCCAGCAACATTGGTCTTAAAGGTGCCGATGTGCTGATTCAAGGCC
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCC
1445194 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
187 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
*
1445259 GAGGTGCCAATGT-CTTGATTCAAGA
252 GAGGTGCCAATGTGC-TGATTCAAGG
* * * * *
1445284 CCAGCTACATTGGATTTAAAGATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * * *
1445349 TAAAGATGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAATATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* *
1445414 CTGATTCAAGGCCAGTGATATTGGACTTGGAGGTGCCAATGTGCTGCTTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * * *
1445479 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTTTGAGGTGCCG
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
*
1445544 ATGTGCTGAATCAAGG
261 ATGTGCTGATTCAAGG
* *
1445560 CCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGGCAGCGATATTGG
1 CCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
* * *
1445625 ACTTGGAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAAGATAAAGGTACCAA
63 ACTTGGAGGTGCCAATGTGC-TGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
* * * ** * *
1445689 TATGCTGATTCAATGCCAGCGATATTAGATTTAAAGATGCCGATGTGCTGATTCAAGGCCAGCTA
127 TATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
*
1445754 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTGGAGGT
192 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
**
1445819 GCCAATGTGCTGATTCAAAA
257 GCCAATGTGCTGATTCAAGG
* * * * *
1445839 CCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* *
1445904 TGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* *
1445969 CTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * * * * *
1446034 GGTC-T-----TAAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAG
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAG
*
1446093 GTGCCAATATGCTGATTCAAGG
255 GTGCCAATGTGCTGATTCAAGG
* * * * * * * *
1446115 CCAGCGATATTGGACTT---G---GAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGAT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC-TGATTCAAGGCCAGCGATATTGGAC
* * * * * * * *
1446173 TTAAAGATAAAGGTACCAATATGCTGATTCAAAGCCAGCGATATTAGA-TT-----TAAAGATGC
65 TT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
* * * * * *
1446232 CGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
124 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAA
* * * * *
1446297 GGCCAGC-AGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
183 GGCCAGCTA-CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
* *
1446355 ACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
247 ACTT---G---GAGGTGCCAATGTGCTGATTCAAGG
* *** * * * *
1446391 ACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * *
1446450 TAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAGATTGGATTTAAAGATAAAGGTGCC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* **
1446515 AATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGC
125 AATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGC
* * * * *
1446580 TATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAG
190 TACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAG
*
1446645 GTGCCAATCTGCTGATTCAAGG
255 GTGCCAATGTGCTGATTCAAGG
* *
1446667 CCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
1446732 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTC-T-----TAAAGGTGCCGATGTG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * *
1446791 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
131 CTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGC
* * * * * * * *
1446856 GATATTGGACTT---G---GAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAA
190 TACATTGGACTTAAAGATAAAGGTGCCAATATGC-TGATTCAAGGCCAGCGATATTGGACTT---
* * * *
1446914 GATAAAGGTACCAATATGCTGATTCAATG
251 G---GAGGTGCCAATGTGCTGATTCAAGG
* * * * * * * *
1446943 CCAGCGATATTAGA-TT-----TAAAGATGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
1447002 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTT---G---GAGGTGC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-CATTGGACTTAAAGATAAAGGTGC
* * * * *
1447060 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
124 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAA
* *** * * * *
1447125 GGACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
183 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
*
1447184 CTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGG
248 CTT---G---GAGGTGCCAATGTGCTGATTCAAGG
* * *
1447219 CCAGCTAGATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * * *
1447284 TGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * *
1447349 CTGATTCAAGGCTAGCAATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAAT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
1447414 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
1447479 ATGTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
* * * *
1447495 CCAGTTACATTGGATTTAAAGATAAAGGTGCCAAAATGCTGATTAAAGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * * *
1447560 TGGAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1447625 CTGATTCAAGGCTAGC-AGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
131 CTGATTCAAGGCCAGCGA-TATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
* *
1447689 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTGGAGGTGCC
195 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCC
1447754 AATGTGCTGATTCAAGG
260 AATGTGCTGATTCAAGG
* * * *
1447771 CCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCTAGCGGTATTAGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
1447830 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1447895 CTGATTCAAGGCCAGTGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * * *
1447960 GGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGACAGCGATATTGGACTTGGAGGAGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
**
1448025 ATGTGCTGATTCAAAA
261 ATGTGCTGATTCAAGG
* * * * *
1448041 CCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1448106 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * ** * *
1448171 CTGATTCAAAGCCAGCGATATTGGATTTAAAGGTGCCGATGTGCTGATTCCAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
1448236 GGACTTAAAGATAAAGGTG-CAATATGCTGATTTCTAGGCCAGCGATATTGGACTTGGAGGTGCC
196 GGACTTAAAGATAAAGGTGCCAATATGCTGA-TTCAAGGCCAGCGATATTGGACTTGGAGGTGCC
1448300 AATGTGCTGATTCAAGG
260 AATGTGCTGATTCAAGG
* *
1448317 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGATATTGGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * * *
1448382 TAAAGGTACCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAATGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
1448447 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* *
1448512 GGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
**
1448577 ATGTGCTGATTCAAAA
261 ATGTGCTGATTCAAGG
* * ** *
1448593 CCAGCTATATTGTACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGGTAGCAATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * *
1448658 TGGAGGTGCCAATCTGCTGATTTAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1448723 CTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* *
1448788 GGATTTAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
**
1448853 ATGTGCTGATTCAAAA
261 ATGTGCTGATTCAAGG
* * *
1448869 CCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGAC
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGAC
1448933 TTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
65 TTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
* * *
1448998 GCTGATTCAAGGACAACGGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
130 GCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
* * *
1449063 TGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTGCC
195 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCC
1449122 AATGTGCTGATTCAAGG
260 AATGTGCTGATTCAAGG
* *
1449139 CCAGCTACATTGCACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
1449204 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * * * * *
1449269 CTGATTCAAGGCCAGCTACATTAGATTTAAAGATAAAGGTGCCAATATGCTGATTTAAGGCCAGC
131 CTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGC
* * * * ** * *
1449334 GATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATG
190 TACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG
* * *
1449393 ATAAAGGTGCCAATATGTTGATTCAAGG
252 ---GAGGTGCCAATGTGCTGATTCAAGG
* * * * * * * *
1449421 CTAGCAATATTGGACTT---G---GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * * *
1449480 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT---G---GAGGTGCC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* * * * *
1449539 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
125 AATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAG
* *** * * * * * *
1449604 GCCAACGGTATTGGACTT-----T-GAGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGAC
184 GCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
1449663 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGG
249 TT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * * * *
1449700 CCAGCAATATTGGACTTAAAGATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* ** * * * * * *
1449765 TAAAGATGACAAAGGCGCCAACATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGGTGAAGGT
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* ** * *
1449830 GCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGA
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGGTGCCAATGTGCTGA
* * * * ** * * * **
1449895 TTCAAGGCCAGCGATATTGGAGTTAAAGATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCA
178 TTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* **
1449960 TTGGACTTAAAGATGACAAAGGCGCCAACATGCTGATTCAAGG
243 TTGGACTT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * *
1450003 CCAGCGACATTGGACTTAAAG----A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
1450062 TAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--T
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* * * * * ** *
1450121 GCCAATGTGCTGATTCTAGGCCAGCAACATTGGTCTTAAAGGTGCCGATGTGCTGATTCAAGGCC
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCC
1450186 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
187 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
*
1450251 GAGGTGCCAATGT-CTTGATTCAAGA
252 GAGGTGCCAATGTGC-TGATTCAAGG
* * * * * *
1450276 CCAGCTACATTTGATTTAAAGATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * *
1450341 TAAAGATGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1450406 CTGATTCAAGGCCAGTGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * * *
1450471 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTTTGAGGTGCCG
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
*
1450536 ATGTGCTGAATCAAGG
261 ATGTGCTGATTCAAGG
*
1450552 CCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 CCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
* * *
1450617 ACTTGGAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAAGATAAAGGTACCAA
63 ACTTGGAGGTGCCAATGTGC-TGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
* * * ** * *
1450681 TATGCTGATTCAATGCCAGCGATATTAGATTTAAAGATGCCGATGTGCTGATTCAAGGCCAGCTA
127 TATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
*
1450746 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTGGAGGT
192 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGT
**
1450811 GCCAATGTGCTGATTCAAAA
257 GCCAATGTGCTGATTCAAGG
* * * * *
1450831 CCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* *
1450896 TGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* *
1450961 CTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * * * * *
1451026 GGTC-T-----TAAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAG
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAG
*
1451085 GTGCCAATATGCTGATTCAAGG
255 GTGCCAATGTGCTGATTCAAGG
* * * * * * * *
1451107 CCAGCGATATTGGACTT---G---GAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGAT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC-TGATTCAAGGCCAGCGATATTGGAC
* * * * * * * *
1451165 TTAAAGATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGA-TT-----TAAAGATGC
65 TT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
** * * * * *
1451224 CGTTGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
124 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAA
* * * * * *
1451289 GGCCAGC-AGTATTGGAGTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
183 GGCCAGCTA-CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
* * *
1451347 ACTTAAAGATAAAGGTGCCAATATGTTGATTCAAGG
247 ACTT---G---GAGGTGCCAATGTGCTGATTCAAGG
* *** * * * *
1451383 ACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * *
1451442 TAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAGATTGGATTTAAAGATAAAGGTGCC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* **
1451507 AATATGCTGATTAAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAAACCAGC
125 AATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGC
* * * * *
1451572 TATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACTTGGAG
190 TACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAG
*
1451637 GTGCCAATCTGCTGATTCAAGG
255 GTGCCAATGTGCTGATTCAAGG
* *
1451659 CCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1451724 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
1451789 CTGATTCAAGGCCAGC-AGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
131 CTGATTCAAGGCCAGCGA-TATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
* * *
1451853 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTGGCGGTGCC
195 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCC
1451918 AATGTGCTGATTCAAGG
260 AATGTGCTGATTCAAGG
* * *
1451935 CCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
1451994 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1452059 CTGATTCAAGGCCAGC-AGTATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
131 CTGATTCAAGGCCAGCGA-TATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
* *
1452123 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACTTGGAGGTGCC
195 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCC
1452188 AATGTGCTGATTCAAGG
260 AATGTGCTGATTCAAGG
* *
1452205 CCAGCTACATTGGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGC-AGTATTAGAC
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGAC
* *
1452263 TTGGAGGTGCCAATGTGCTGATTCAAGGCCTGCTACATTGCACTTAAAGATAAAGGTGCCAATAT
65 TTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
1452328 GCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
130 GCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
* * * * *
1452393 TGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAGATTGGATTTAAAGATAAA
195 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GA
* * *
1452458 GGTGCCAATATGCTGAATAAAGG
254 GGTGCCAATGTGCTGATTCAAGG
* * * * * * *
1452481 CCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * *
1452540 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTT---G---AAGGTGC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-CATTGGACTTAAAGATAAAGGTGC
* * * * *
1452598 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
124 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAA
* *** * * * *
1452663 GGACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
183 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
** * *
1452722 CTTAAAGGTGCCAATATGCTGGTTCAAGG
248 CTTGGAGGTGCCAATGTGCTGATTCAAGG
*** * * * * * *
1452751 CCAGCGGTATTAGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGCACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
1452810 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAG-TGATATTGGACTT---G---GAGGTGC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATAAAGGTGC
* * * * *
1452868 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
124 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAA
* *** * * * * * *
1452933 GGCCAACGGTATTGGACTT-----T-GAGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGA
183 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* *
1452992 CTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGG
248 CTT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * * * **
1453030 CCAGCAATATTGGACTTAAAGATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACGTTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* ** * * * * *
1453095 TAAAGATGACAAAGGCGCCAACATGCTAATTCAAGGCCAG-TGATATTGGACCTAAAGGTGAAGG
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATAAAGG
* ** * *
1453159 TGCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTG
121 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGGTGCCAATGTGCTG
* * * * ** * * * **
1453224 ATTCAAGGCCAGCGATATTGGAGTTAAAGATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGC
177 ATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
* **
1453289 ATTGGACTTAAAGATGACAAAGGCGCCAACATGCTGATTCAAGG
242 ATTGGACTT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * *
1453333 CCAGCGACATTGGACTTAAAG----A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
1453392 TAAAGATGATAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--T
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* * * * * ** *
1453451 GCCAATGTGCTGATTCTAGGCCAGCAACATTGGTCTTAAAGGTGCCGATGTGCTGATTCAAGGCC
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCC
1453516 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
187 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
*
1453581 GAGGTGCCAATGT-CTTGATTCAAGA
252 GAGGTGCCAATGTGC-TGATTCAAGG
* ** * * *
1453606 CCAGCTACATTGGATTTAAAGATAAAGGAACCAATATGCTGATTCAATGCCAGCGATATTAGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * **
1453671 TAAAGATGCTGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* *
1453736 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCTAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * *
1453801 GGACTTAAAGATAAAGGTGCCAATATGCTGATTTAAGGCGAGTGATATTGGACTTGGAGGTGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
*
1453866 ATCTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
1453882 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* *
1453947 TGGAGGTGGCAATGTGCGGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* *
1454012 CTGATTCAAGGCCAACGGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * * * * ** * *
1454077 GGACTTAAAGATAAAGTTACCAATATGCTGATTCAATGCCAGCGATATTAGATTTAAAGATGCCG
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
1454142 ATGTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
* *
1454158 CCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* *
1454223 TGGAGGTGCCAATATGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * *
1454288 CTGATTTAAGGCCAGTGATATTGGACTTGGAGGTGCCAATCTGCTGATTCAAGGCCAGCGACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
1454353 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGGCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
1454418 ATGTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
* * * * *
1454434 CCAGCTACATTGGACTTAAAGATAAAGGTACCAATATGCTGATTCAATGCTAGCGATATTAGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** *
1454499 TAAAGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * *
1454564 CTGATTCAAGGACAGCGGTATTGGACTTGGAGGTTCCAATGTGCTGATTCAGGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * *
1454629 GGAC-T-----TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
1454688 ATGTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
*
1454704 CCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
1454769 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * * * *
1454834 CTGATTCAAGGCCAGCTACATTGGATTTAAAGATAAAGGTGCCAATATGCTGATTTAAGGCCAGC
131 CTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGC
* * * * ** * *
1454899 GATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAAACCAGCTATATTGTACTTAATG
190 TACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--TG
* * *
1454958 ATAAAGGTGCCAATATGTTGATTCAAGG
252 ---GAGGTGCCAATGTGCTGATTCAAGG
* * * * * * * *
1454986 CTAGCAATATTGGACTT---G---GAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * * *
1455045 TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT---G---GAGGTGCC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* * * * *
1455104 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
125 AATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAG
* *** * * * * * *
1455169 GCCAACGGTATTGGACTT-----T-GAGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGAC
184 GCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
1455228 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGG
249 TT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * * * *
1455265 CCAGCAATATTGGACTTAAAGATGAAGGTGTCGATGTGCTGATTCAAGGCCAGCGACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* ** * * * * * *
1455330 TAAAGATGACAAAGGCGCCAACATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGGTGAAGGT
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* ** * *
1455395 GCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGA
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGGTGCCAATGTGCTGA
* * * * ** * * * **
1455460 TTCAAGGCCAGCGATATTGGAGTTAAAGATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCA
178 TTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* **
1455525 TTGGACTTAAAGATGACAAAGGCGCCAACATGCTGATTCAAGG
243 TTGGACTT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * *
1455568 CCAGCGACATTGGACTTAAAG----A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
1455627 TAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--T
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* * * * * ** *
1455686 GCCAATGTGCTGATTCTAGGCCAGCAACATTGGTCTTAAAGGTGCCGATGTGCTGATTCAAGGCC
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCC
*
1455751 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTG
187 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
*
1455816 GAGGTGCCAATGT-CTTGATTCAAGA
252 GAGGTGCCAATGTGC-TGATTCAAGG
* * * * *
1455841 CCAGCTACATTGGATTTAAAGATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * *
1455906 TAAAGATGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1455971 CTGATTCAAGGCCAGTGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* * * *
1456036 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTTTGAGGTGCCG
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
*
1456101 ATGTGCTGAATCAAGG
261 ATGTGCTGATTCAAGG
*
1456117 CCAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 CCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
* * * *
1456182 ACTTGGAGGTGACAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAAGATAAAGGTACCAA
63 ACTTGGAGGTGCCAATGTGC-TGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
* * * ** ** *
1456246 TATGCTGATTCAATGCCAGCGATATTAGATTTAAAGAAGCCGATGTGCTGATTCAAGGCCAGCTA
127 TATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
*
1456311 CATTGGA-TTCAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTGGAGG
192 CATTGGACTT-AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGG
**
1456375 TGCCAATGTGCTGATTCAAAA
256 TGCCAATGTGCTGATTCAAGG
* * * * *
1456396 CCAGCTATATTGTACTTAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* *
1456461 TGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACAATGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1456526 CTGATTCAAGGCCAACGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
1456591 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC-AGTATTGGACTTGGAGGTGCC
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGGAGGTGCC
1456655 AATGTGCTGATTCAAGG
260 AATGTGCTGATTCAAGG
* *
1456672 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGACAGCGGTATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1456737 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * *
1456796 CTGGTTCAAGGCCAGCGGTATTAGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
1456861 GCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
1456926 ATGTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
* * * *
1456942 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAGATTGGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * * *
1457007 TAAAGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCGATATTGGACTT---G---GAGGTGCC
66 T---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* ** * * * *
1457066 AATGTGCTGATTCAAAACCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAG
125 AATATGCTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAG
* * * * *
1457131 GCCAGC-AGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
184 GCCAGCTA-CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* *
1457189 CTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
248 CTT---G---GAGGTGCCAATGTGCTGATTCAAGG
* *** ** * * *
1457224 ACAGCGGTATTGGACTT---G---GCGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * * *** * * *
1457283 TAAAGGTGCCAATATGCTGGTTCAAGGCCAGCGGTATTAGACTT---G---GAGGTGCCAATGTG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * * *
1457342 CTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
131 CTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGC
* * * * *
1457407 -AGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
190 TA-CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---
* *
1457465 GATAAAGGTGCCAATATGCTGATTCAAGG
251 G---GAGGTGCCAATGTGCTGATTCAAGG
* *** * * * *
1457494 ACAGCGGTATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * * * *** * * *
1457553 TAAAGGTGCCAATATGCTGGTTCAGGGCCAGCGGTATTAGACTT---G---GAGGTGCCAATGTG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* * * * *
1457612 CTGATTCAAGGCCAGCTACATTGCACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAG-
131 CTGATTCAAGGCCAGCGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGC
* * * * *
1457676 TGATATTGGACTT---G---GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
190 T-ACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---
* *
1457735 GATAAAGGTGCCAATATGCTGATTCAAGG
251 G---GAGGTGCCAATGTGCTGATTCAAGG
* *** * * * * * *
1457764 CCAACGGTATTGGACTT-----T-GAGGTGCCGATGTGCTGAATCAAGGCCAGCTACATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * *
1457823 TAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGGT
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* * * * * * **
1457888 GTCGATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCTAACATGCTGA
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGGTGCCAATGTGCTGA
* * * * * * ** *
1457953 TTCAAGGCCAGCGATATTGGACCTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAATGACA
178 TTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
*
1458018 TTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGG
243 TTGGACTT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* * * * ** * * * **
1458061 CCAGCGATATTGGAGTTAAAGATGAAGGTATCGATGTGCTGATTCTAGGCCAGCGGCATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* ** *
1458126 TAAAGATGACAAAGGCGCCAACATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG----A--T
66 T---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGT
* * * * * *
1458185 GCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAAAGATGATAAAGGCGCCAATATGCTGA
122 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGGTGCCAATGTGCTGA
* * * * * *
1458250 TTCAAGGCCAGCGATATTGGACTTAAAG----A--TGCCAATGTGCTGATTCTAGGCCAGCAACA
178 TTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* ** *
1458309 TTGGTCTTAAAGGTGCCGATGTGCTGATTCAAGG
243 TTGGACTTGGAGGTGCCAATGTGCTGATTCAAGG
1458343 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * *
1458408 TGGAGGTGCCAATGT-CTTGATTCAAGACCAGCTACATTGGATTTAAAGATAAAGGTACCAATAT
66 TGGAGGTGCCAATGTGC-TGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
* * * ** * *
1458472 GCTGATTCAATGCCAGCGATATTAGATTTAAAGATGCCGATGTGCTGATTCAAGGCCAGCTACAT
130 GCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
1458537 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCC
195 TGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCC
*
1458602 AATATGCTGATTCAAGG
260 AATGTGCTGATTCAAGG
* * *
1458619 CTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTTAAGGCCAGTGATATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
1458684 TGGAGGTGCCAATCTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
1458749 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGGCAATGTGCTGATTCAAGGCCAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
* *
1458814 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTTGGAGGTGCCA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
1458879 ATGTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
* * * *
1458895 CCAGCTACATTGGACTTAAAGATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGATT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * *
1458960 TAAAGATGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
* *
1459025 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCTAGCTACATT
131 CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
1459090 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCTA
196 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
*
1459155 ATCTGCTGATTCAAGG
261 ATGTGCTGATTCAAGG
*
1459171 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGGTATTGGACT
1 CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * ** *
1459236 TGGAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGAGGAAGGTGCTAATATG
66 TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
1459301 CTGA
131 CTGA
1459305 AAAAAGTCCC
Statistics
Matches: 13180, Mismatches: 1451, Indels: 1038
0.84 0.09 0.07
Matches are distributed among these distances:
265 8 0.00
267 23 0.00
268 71 0.01
269 9 0.00
270 2716 0.21
271 29 0.00
272 35 0.00
273 209 0.02
274 24 0.00
275 35 0.00
276 5912 0.45
277 115 0.01
278 5 0.00
279 1104 0.08
280 23 0.00
281 15 0.00
282 1011 0.08
285 201 0.02
288 179 0.01
291 170 0.01
293 5 0.00
294 210 0.02
297 621 0.05
299 5 0.00
302 5 0.00
303 440 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (276 bp):
CCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
TGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
CTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCA
ATGTGCTGATTCAAGG
Found at i:1459459 original size:31 final size:32
Alignment explanation
Indices: 1459421--1459495 Score: 116
Period size: 31 Copynumber: 2.4 Consensus size: 32
1459411 CAGTAGCTTC
*
1459421 GTATCGATACAATGTATCGCTACA-AACTTAT
1 GTATCGATACAATGTATCGATACAGAACTTAT
* *
1459452 GTATCGATACATTGTATCGATACAGCACTTAT
1 GTATCGATACAATGTATCGATACAGAACTTAT
1459484 GTATCGATACAA
1 GTATCGATACAA
1459496 CATTTTTGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 22 0.56
32 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.32
Consensus pattern (32 bp):
GTATCGATACAATGTATCGATACAGAACTTAT
Found at i:1459488 original size:19 final size:19
Alignment explanation
Indices: 1459432--1459514 Score: 81
Period size: 19 Copynumber: 4.7 Consensus size: 19
1459422 TATCGATACA
*
1459432 ATGTATCGCTACAA-ACTT
1 ATGTATCGATACAACACTT
1459450 ATGTATCGAT---ACA--T
1 ATGTATCGATACAACACTT
*
1459464 -TGTATCGATACAGCACTT
1 ATGTATCGATACAACACTT
*
1459482 ATGTATCGATACAACATTT
1 ATGTATCGATACAACACTT
*
1459501 TTGTATCGATACAA
1 ATGTATCGATACAA
1459515 ATCGTTGAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
13 9 0.17
14 1 0.02
15 1 0.02
16 3 0.06
18 10 0.19
19 29 0.55
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (19 bp):
ATGTATCGATACAACACTT
Found at i:1460616 original size:95 final size:95
Alignment explanation
Indices: 1460256--1460695 Score: 603
Period size: 101 Copynumber: 4.5 Consensus size: 95
1460246 GACTTAAAGA
*
1460256 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAAC
1 TAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAAC
* *
1460321 ATGCTAATTCAAGGCCAGCGATATTGGACC
66 ATGCTGATTCAAGGCCAGCGATATTGGACT
* *
1460351 TAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGT
1 TAAA---G-A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGC
* *
1460416 GCCAATATGCTGATTCAAGGCCAGCGATATTGGAGT
60 GCCAACATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
1460452 TAAAGATGAAGGTATCGATGTGTTGATTCAAGGCCAGCGGCATTGGACTTAAAGATGACAAAGGC
1 TAAAGAT----G--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGC
*
1460517 GCCAACATGCTGATTCAAGGCCAGCGACATTGGACT
60 GCCAACATGCTGATTCAAGGCCAGCGATATTGGACT
*
1460553 TAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTA-TTAAAGATGACAAAGGCGCCAA
1 TAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGACAAAGGCGCCAA
*
1460617 TATGCTGATTCAAGGCCAGCGATATTGGACT
65 CATGCTGATTCAAGGCCAGCGATATTGGACT
* * *
1460648 TAAAGATGCCAATGTGCTGATTCTAGGCCAGCAACATTGGTCTTAAAG
1 TAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
1460696 GTGCCGATGT
Statistics
Matches: 304, Mismatches: 27, Indels: 28
0.85 0.08 0.08
Matches are distributed among these distances:
94 1 0.00
95 124 0.41
96 2 0.01
97 2 0.01
98 2 0.01
99 1 0.00
101 172 0.57
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (95 bp):
TAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAAC
ATGCTGATTCAAGGCCAGCGATATTGGACT
Found at i:1460790 original size:92 final size:92
Alignment explanation
Indices: 1460612--1461496 Score: 1431
Period size: 92 Copynumber: 9.7 Consensus size: 92
1460602 TGACAAAGGC
* * * *
1460612 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--TGCCAATGTGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* * * * **
1460671 TAGGCCAGCAACATTGGTCTTAAAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
*
1460698 GCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1460763 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
* * *
1460790 GCCAATGTCCTGATTCAAGACCAGCTACATTGGACTTAAAGATAAAGGTACCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* * * ** *
1460855 AATGCCAGCGATATTAGATTTAAAGAT
66 AAGGCCAGCGATATTGGACTTGGAGGT
* * *
1460882 GCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGGTAATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1460947 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
* *
1460974 GCCAATATGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1461039 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
*
1461066 GCCAATCTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1461131 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
1461158 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* *
1461223 AAGGCCAACGGTATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
1461250 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1461315 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
*
1461342 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAATGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
*
1461407 AAGGCCAGCGGTATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTGGAGGT
* * *
1461434 GCCGATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAT
1461497 AAAAGTCTCG
Statistics
Matches: 742, Mismatches: 51, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
86 37 0.05
90 1 0.00
92 704 0.95
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (92 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTGGAGGT
Found at i:1460903 original size:184 final size:184
Alignment explanation
Indices: 1460242--1461496 Score: 1474
Period size: 184 Copynumber: 6.7 Consensus size: 184
1460232 GGCTAGCGAT
* *
1460242 ATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G
* * ** * * * * * * *
1460307 ACAAAGGCGCCAACATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGGTGAAGGTGCCAATGT
61 ----AGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
* * *
1460372 GCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGC
122 GCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGGTGCCAATGTGCTGATTCAAGGC
* *
1460437 CAGCGAT
178 CAGCTAC
* * ** * * * **
1460444 ATTGGAGTTAAAGATGAAGGTATCGATGTGTTGATTCAAGGCCAGCGGCATTGGACTTAAAGATG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G
* * ** * *
1460509 ACAAAGGCGCCAACATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG----A--TGCCAATGT
61 ----AGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
* * * *
1460568 GCTGATTCAAGGCCAGCGACATTAGTA-TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGG
122 GCTGATTCAAGGCCAGCGATATT-GGACTT---G--G----AGGTGCCAATGTGCTGATTCAAGG
* *
1460632 CCAGCGAT
177 CCAGCTAC
* * * * * **
1460640 ATTGGACTTAAAG----A--TGCCAATGTGCTGATTCTAGGCCAGCAACATTGGTCTTAAAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
1460699 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* *
1460764 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTCCTGATTCAAGACCAGCTAC
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * * ** *
1460818 ATTGGACTTAAAGATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGATTTAAAGATG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1460883 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGGTAATTCA
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* *
1460948 AGGCCAGCGATATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCTAGCTAC
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
1461002 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1461067 CCAATCTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1461132 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* *
1461186 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGGTATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
*
1461251 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
1461316 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
131 AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* *
1461370 ATTGGACTTAAAGATAAATGTGCCAATATGCTGATTCAAGGCCAGCGGTATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
* *
1461435 CCGATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAT
1461497 AAAAGTCTCG
Statistics
Matches: 964, Mismatches: 75, Indels: 46
0.89 0.07 0.04
Matches are distributed among these distances:
178 39 0.04
181 40 0.04
182 2 0.00
184 623 0.65
185 1 0.00
186 2 0.00
187 32 0.03
190 30 0.03
192 1 0.00
196 87 0.09
197 2 0.00
198 1 0.00
202 104 0.11
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (184 bp):
ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
Found at i:1461004 original size:276 final size:276
Alignment explanation
Indices: 1460242--1461496 Score: 1483
Period size: 276 Copynumber: 4.5 Consensus size: 276
1460232 GGCTAGCGAT
* *
1460242 ATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
** * * * * * * *
1460307 ACAAAGGCGCCAACATGCTAATTCAAGGCCAGCGATATTGGACCTAAAGGTGAAGGTGCCAATGT
66 -C-----CG---ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
1460372 GCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGC
122 GCTGATTCAAGGCCAACGACATTGGACTT---G--G----AGGTGCCAATATGCTGATTCAAGGC
* * * * ** * * * **
1460437 CAGCGATATTGGAGTTAAAGATGAAGGTATCGATGTGTTGATTCAAGGCCAGCGGCATTGGACTT
178 CAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** *
1460502 AAAGATGACAAAGGCGCCAACATGCTGATTCAAGGCCAGCGAC
243 ---G--G----AGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * *
1460545 ATTGGACTTAAAG----A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTA-TTAAAGAT
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT
* * * *
1460603 GACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--TGCCAATG
65 G-C-----CG---ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
* * * * ** * *
1460662 TGCTGATTCTAGGCCAGCAACATTGGTCTTAAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACA
121 TGCTGATTCAAGGCCAACGACATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCCAGCTACA
1460727 TTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGC
186 TTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGC
* *
1460792 CAATGTCCTGATTCAAGACCAGCTAC
251 CAATGTGCTGATTCAAGGCCAGCTAC
* * * *
1460818 ATTGGACTTAAAGATAAAGGTACCAATATGCTGATTCAATGCCAGCGATATTAGATTTAAAGATG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* *
1460883 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGGTAATTCA
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * *
1460948 AGGCCAGCGATATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCTAGCTACATTGGACTTAA
131 AGGCCAACGACATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
1461013 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATCTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1461078 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
** *
1461094 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
1461159 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
** *
1461224 AGGCCAACGGTATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
131 AGGCCAACGACATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
1461289 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
196 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
1461354 ATTCAAGGCCAGCTAC
261 ATTCAAGGCCAGCTAC
* * ** *
1461370 ATTGGACTTAAAGATAAATGTGCCAATATGCTGATTCAAGGCCAGCGGTATTGGACTTGGAGGTG
1 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* *
1461435 CCGATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
66 CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAT
1461497 AAAAGTCTCG
Statistics
Matches: 865, Mismatches: 73, Indels: 55
0.87 0.07 0.06
Matches are distributed among these distances:
270 34 0.04
273 41 0.05
274 1 0.00
276 532 0.62
277 2 0.00
278 2 0.00
279 38 0.04
282 77 0.09
291 34 0.04
293 1 0.00
297 87 0.10
298 2 0.00
299 1 0.00
303 13 0.02
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (276 bp):
ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
AGGCCAACGACATTGGACTTGGAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTG
ATTCAAGGCCAGCTAC
Found at i:1461591 original size:52 final size:52
Alignment explanation
Indices: 1461513--1461643 Score: 226
Period size: 52 Copynumber: 2.5 Consensus size: 52
1461503 CTCGAAATAT
*
1461513 GAAAATTTGCCTCCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
* *
1461565 GAAAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
*
1461617 GTAAATTTGCCTGCATGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACA
1461644 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (52 bp):
GAAAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
Found at i:1461654 original size:52 final size:51
Alignment explanation
Indices: 1461513--1461663 Score: 214
Period size: 52 Copynumber: 2.9 Consensus size: 51
1461503 CTCGAAATAT
*
1461513 GAAAATTTGCCTCCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGG
* *
1461565 GAAAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGG
* *
1461617 GTAAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1461664 ATGTATCGAT
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 88 0.98
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (51 bp):
GAAAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGG
Found at i:1461670 original size:13 final size:13
Alignment explanation
Indices: 1461652--1461676 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1461642 CAAAGATCAG
1461652 TGTATCGATACAA
1 TGTATCGATACAA
1461665 TGTATCGATACA
1 TGTATCGATACA
1461677 TTTGGGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1461738 original size:13 final size:13
Alignment explanation
Indices: 1461720--1461801 Score: 74
Period size: 13 Copynumber: 5.5 Consensus size: 13
1461710 AGCTTCGTAG
1461720 CGATACATTGTAT
1 CGATACATTGTAT
1461733 CGATACAAACTTATGTAT
1 CGATAC--A--T-TGTAT
1461751 CGATACATTGTAT
1 CGATACATTGTAT
1461764 CGATACAAACTTATGTAT
1 CGATAC--A--T-TGTAT
1461782 CGATACATTGTAT
1 CGATACATTGTAT
1461795 CGATACA
1 CGATACA
1461802 ACACTTATGT
Statistics
Matches: 59, Mismatches: 0, Indels: 20
0.75 0.00 0.25
Matches are distributed among these distances:
13 29 0.49
14 2 0.03
15 2 0.03
16 2 0.03
17 2 0.03
18 22 0.37
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.34
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1461751 original size:18 final size:18
Alignment explanation
Indices: 1461728--1461841 Score: 122
Period size: 19 Copynumber: 6.8 Consensus size: 18
1461718 AGCGATACAT
1461728 TGTATCGATACAAACTTA
1 TGTATCGATACAAACTTA
1461746 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1461759 TGTATCGATACAAACTTA
1 TGTATCGATACAAACTTA
1461777 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1461790 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
* *
1461809 TGTATCGATACAACATTTT
1 TGTATCGATACAA-ACTTA
1461828 TGTATCGATACAAA
1 TGTATCGATACAAA
1461842 TCATTGAAAA
Statistics
Matches: 83, Mismatches: 2, Indels: 22
0.78 0.02 0.21
Matches are distributed among these distances:
13 22 0.27
14 2 0.02
15 1 0.01
16 3 0.04
17 1 0.01
18 24 0.29
19 30 0.36
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1461758 original size:31 final size:31
Alignment explanation
Indices: 1461720--1461820 Score: 193
Period size: 31 Copynumber: 3.2 Consensus size: 31
1461710 AGCTTCGTAG
1461720 CGATACATTGTATCGATACAAACTTATGTAT
1 CGATACATTGTATCGATACAAACTTATGTAT
1461751 CGATACATTGTATCGATACAAACTTATGTAT
1 CGATACATTGTATCGATACAAACTTATGTAT
1461782 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAA-ACTTATGTAT
1461814 CGATACA
1 CGATACA
1461821 ACATTTTTGT
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
31 52 0.75
32 17 0.25
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.34
Consensus pattern (31 bp):
CGATACATTGTATCGATACAAACTTATGTAT
Found at i:1463381 original size:13 final size:13
Alignment explanation
Indices: 1463363--1463387 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1463353 ACAATGAGCA
1463363 ATGTATCGATACG
1 ATGTATCGATACG
1463376 ATGTATCGATAC
1 ATGTATCGATAC
1463388 AATGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACG
Found at i:1463385 original size:33 final size:33
Alignment explanation
Indices: 1463343--1463407 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
1463333 ATATTGTAAA
*
1463343 ATGTATCGATACAATG-AGCAATGTATCGATACG
1 ATGTATCGATACAATGCA-AAATGTATCGATACG
1463376 ATGTATCGATACAATGCAAAATGTATCGATAC
1 ATGTATCGATACAATGCAAAATGTATCGATAC
1463408 ATCTGGGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAATGCAAAATGTATCGATACG
Found at i:1463401 original size:20 final size:19
Alignment explanation
Indices: 1463322--1463408 Score: 78
Period size: 20 Copynumber: 4.7 Consensus size: 19
1463312 AAAATGCCTG
* *
1463322 AATGTATCGATATATTGTAA
1 AATGTATCGATACAATG-AA
*
1463342 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
1463362 AATGTATCGATAC---G--
1 AATGTATCGATACAATGAA
1463376 -ATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
1463395 AATGTATCGATACA
1 AATGTATCGATACA
1463409 TCTGGGTAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
13 12 0.21
16 1 0.02
17 1 0.02
19 1 0.02
20 41 0.73
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:1464941 original size:32 final size:32
Alignment explanation
Indices: 1464905--1464981 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 32
1464895 TGTATAAGAG
*
1464905 ATAAGAGATAAAAAATAGT-TTATCTCATCTAT
1 ATAAGAGATAAAAAATA-TCTTAGCTCATCTAT
* * * *
1464937 ATAAGAGATAGATATTATCTTAGCTCATTTAT
1 ATAAGAGATAAAAAATATCTTAGCTCATCTAT
*
1464969 ACAAGAGATAAAA
1 ATAAGAGATAAAA
1464982 GACTAGCTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
31 1 0.03
32 35 0.97
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (32 bp):
ATAAGAGATAAAAAATATCTTAGCTCATCTAT
Found at i:1470665 original size:13 final size:13
Alignment explanation
Indices: 1470647--1470676 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1470637 ACATTTTACC
1470647 ATGTATCGATACA
1 ATGTATCGATACA
1470660 ATGTATCGATACA
1 ATGTATCGATACA
1470673 ATGT
1 ATGT
1470677 CCCATGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1470666 original size:33 final size:33
Alignment explanation
Indices: 1470624--1470689 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
1470614 GCCGTTAGGC
* *
1470624 ACAATGTATCGATACATTTTACCATGTATCGAT
1 ACAATGTATCGATACAATGTACCATGTATCGAT
*
1470657 ACAATGTATCGATACAATGTCCCATGTATCGAT
1 ACAATGTATCGATACAATGTACCATGTATCGAT
1470690 GCATTTCACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (33 bp):
ACAATGTATCGATACAATGTACCATGTATCGAT
Found at i:1470747 original size:20 final size:20
Alignment explanation
Indices: 1470721--1470775 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
1470711 CTGCCAGTCT
* *
1470721 CATGTATCAATACAATTTAG
1 CATGTATCGATACAATTGAG
* *
1470741 TATGTATCGATATAA-TGAG
1 CATGTATCGATACAATTGAG
1470760 CATGTATCGATACAAT
1 CATGTATCGATACAAT
1470776 GTATCAATAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:1478390 original size:79 final size:79
Alignment explanation
Indices: 1478296--1479038 Score: 674
Period size: 79 Copynumber: 9.4 Consensus size: 79
1478286 GAAAATTTTA
* * * * *
1478296 ATATTTTGGAGATAAAAATAGGGTCGAAGTA-CCCACTCAGAAATAACGGGGTTGGAGTATCCCC
1 ATATTTTGAAAATAAAACTAGGGTTGGAGTATCCC-CTCAGAAATAACGGGGTTGGAGTATCCCC
* * *
1478360 AATGGTGGAAAATCG
65 GATTGTGGAAAATTG
* **
1478375 ATATTTTGAAAATAAAA-TCGGGGTTGGAGTATCCTTTCAGAAATAACGGGGTTGGAGTATCCCC
1 ATATTTTGAAAATAAAACT-AGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCC
* *
1478439 AATTGTGAAAAATT-
65 GATTGTGGAAAATTG
* * * * *
1478453 AGT-GTTTGAAAATAAAACTGGGGTTGGAGTATCCCCTCGGAAATAATGGAGTTGGAGTATCCCC
1 A-TATTTTGAAAATAAAACTAGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCC
* *
1478517 GATTATGAAAAATTG
65 GATTGTGGAAAATTG
* * * * * * * *
1478532 GTGTTTTGAAAATAAAATTGGGGTTGAAGTATCTCCTC-GAAAATAATGGGGTTGGAGTATCTCC
1 ATATTTTGAAAATAAAACTAGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCC
1478596 GATTGTGGAAAATTG
65 GATTGTGGAAAATTG
* * * * *
1478611 GTATTTT-AGAAATAAAACTGGGGTTGGAGTATCCCCT-TGAAAATAACGGGGTTTGATTATCCC
1 ATATTTTGA-AAATAAAACTAGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCC
1478674 CGATTGTGGAAAATTG
64 CGATTGTGGAAAATTG
* * * * *
1478690 ATGTTTTAAAAATAAAAC-CGAGGTTAGAGTATCCCCTC-GAAAATAATGGGGTTGGAGTATCCC
1 ATATTTTGAAAATAAAACTAG-GGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCC
1478753 CGATTGTGGAAAATT-
64 CGATTGTGGAAAATTG
* * *
1478768 AGTATTTTGGAAATAAAACCAGGGTTGGAGTATCCCTTCAGAAATAACGGGGTTGGA-TATCCCC
1 A-TATTTTGAAAATAAAACTAGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCC
1478832 GATTGT-GAAAATTTG
65 GATTGTGGAAAA-TTG
* * * * * *
1478847 GTGTTTT-AAAAGTAAAAC-CGAGGTTAGAGTATCCACTCAGAAATAATGGGGTTGGAGTATCCC
1 ATATTTTGAAAA-TAAAACTAG-GGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCC
*
1478910 CGATTGTGAAAAATTG
64 CGATTGTGGAAAATTG
* * * * * * * *
1478926 GTGTTTTGGAAATAAAAC-CGAGGTTGGAGTATCCCTTCAAAAATAACAGGGTTGGAGTATCCTC
1 ATATTTTGAAAATAAAACTAG-GGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCC
*
1478990 -AGTTGTTGAAAATTG
65 GA-TTGTGGAAAATTG
*** * *
1479005 GCGTTTTGGAAATAAAA-TCGGGGTTGGAGTATCC
1 ATATTTTGAAAATAAAACT-AGGGTTGGAGTATCC
1479039 TCGATTGTGA
Statistics
Matches: 569, Mismatches: 70, Indels: 50
0.83 0.10 0.07
Matches are distributed among these distances:
77 9 0.02
78 130 0.23
79 417 0.73
80 13 0.02
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (79 bp):
ATATTTTGAAAATAAAACTAGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCG
ATTGTGGAAAATTG
Found at i:1478601 original size:157 final size:157
Alignment explanation
Indices: 1478323--1479038 Score: 788
Period size: 157 Copynumber: 4.5 Consensus size: 157
1478313 ATAGGGTCGA
* * * * * *
1478323 AGTA-CCCACTCAGAAATAACGGGGTTGGAGTATCCCCAATGGTGGAAAATCGATATTTTGAAAA
1 AGTATCCC-CTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAA
* ** * *
1478387 TAAAATCGGGGTTGGAGTATCCTTTCAGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAAT
65 TAAAATCGGGGTTGAAGTATCCACTCAGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAAT
*
1478452 TAGTGTTTGAAAATAAAACTGGGGTTGG
130 TAGTGTTTGAAAATAAAACCGGGGTTGG
* * * *
1478480 AGTATCCCCTCGGAAATAATGGAGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGAAAAT
1 AGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAAT
* * *
1478545 AAAATTGGGGTTGAAGTATCTC-CTC-GAAAATAATGGGGTTGGAGTATCTCCGATTGTGGAAAA
66 AAAATCGGGGTTGAAGTATC-CACTCAG-AAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAA
* * * *
1478608 TTGGTATTTTAGAAATAAAACTGGGGTTGG
129 TTAGTGTTTGA-AAATAAAACCGGGGTTGG
* * * * * *
1478638 AGTATCCCCT-TGAAAATAACGGGGTTTGATTATCCCCGATTGTGGAAAATTGATGTTTTAAAAA
1 AGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAA
* * * *
1478702 TAAAACCGAGGTT-AGAGTATCCCCTC-GAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAA
65 TAAAATCGGGGTTGA-AGTATCCACTCAG-AAATAATGGGGTTGGAGTATCCCCGATTGTGAAAA
* * *
1478765 ATTAGTATTTTGGAAATAAAACCAGGGTTGG
128 ATTAGT-GTTTGAAAATAAAACCGGGGTTGG
* *
1478796 AGTATCCCTTCAGAAATAACGGGGTTGGA-TATCCCCGATTGTGAAAATTTGGTGTTTT-AAAAG
1 AGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAA-
* *
1478859 TAAAACCGAGGTT-AGAGTATCCACTCAGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAA
65 TAAAATCGGGGTTGA-AGTATCCACTCAGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAA
* * *
1478923 TTGGTGTTTTGGAAATAAAACCGAGGTTGG
129 TTAGTG-TTTGAAAATAAAACCGGGGTTGG
* * * * * *
1478953 AGTATCCCTTCAAAAATAACAGGGTTGGAGTATCCTC-AGTTGTTG-AAAATTGGCGTTTTGGAA
1 AGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGA-TTG-TGAAAAATTGGTGTTTTGAAA
*
1479016 ATAAAATCGGGGTTGGAGTATCC
64 ATAAAATCGGGGTTGAAGTATCC
1479039 TCGATTGTGA
Statistics
Matches: 482, Mismatches: 60, Indels: 33
0.84 0.10 0.06
Matches are distributed among these distances:
156 5 0.01
157 253 0.52
158 215 0.45
159 9 0.02
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (157 bp):
AGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAAT
AAAATCGGGGTTGAAGTATCCACTCAGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATT
AGTGTTTGAAAATAAAACCGGGGTTGG
Found at i:1478958 original size:236 final size:235
Alignment explanation
Indices: 1478297--1479038 Score: 877
Period size: 236 Copynumber: 3.1 Consensus size: 235
1478287 AAAATTTTAA
* * * *
1478297 TATTTTGGAGATAAAAAT-AGGGTCGAAGTACCCACTCAGAAATAACGGGGTTGGAGTATCCCCA
1 TATTTTGGAAAT-AAAATCAGGGTTGAAGTATCC-CTCAGAAATAACGGGGTTGGAGTATCCCCG
* * * * **
1478361 ATGGTGGAAAATCGATATTTTGAAAATAAAATCGGGGTTGGAGTATCCTTTCAGAAATAACGGGG
64 ATTGTGGAAAATTGGTATTTT-AAAATAAAACCGGGGTTGGAGTATCCACTCAGAAATAACGGGG
* * * *
1478426 TTGGAGTATCCCCAATTGTGAAAAATTAGTG-TTTGAAAATAAAACTGGGGTTGGAGTATCCCCT
128 TTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAACCGAGGTTGGAGTATCCCCT
* * * *
1478490 CGGAAATAATGGAGTTGGAGTATCCCCGATTATGAAAAATTGG
193 CGAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATTGG
* * ** * *
1478533 TGTTTTGAAAATAAAATTGGGGTTGAAGTATCTCCTC-GAAAATAATGGGGTTGGAGTATCTCCG
1 TATTTTGGAAATAAAATCAGGGTTGAAGTATC-CCTCAG-AAATAACGGGGTTGGAGTATCCCCG
* * *
1478597 ATTGTGGAAAATTGGTATTTTAGAAATAAAACTGGGGTTGGAGTATCCCCT-TGAAAATAACGGG
64 ATTGTGGAAAATTGGTATTTTA-AAATAAAACCGGGGTTGGAGTATCCACTCAG-AAATAACGGG
* * * * * *
1478661 GTTTGATTATCCCCGATTGTGGAAAATTGATGTTTTAAAAATAAAACCGAGGTTAGAGTATCCCC
127 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAACCGAGGTTGGAGTATCCCC
*
1478726 TCGAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATTAG
192 TCGAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATTGG
* *
1478770 TATTTTGGAAATAAAACCAGGGTTGGAGTATCCCTTCAGAAATAACGGGGTTGGA-TATCCCCGA
1 TATTTTGGAAATAAAATCAGGGTTGAAGTATCCC-TCAGAAATAACGGGGTTGGAGTATCCCCGA
* * * *
1478834 TTGT-GAAAATTTGGTGTTTTAAAAGTAAAACCGAGGTTAGAGTATCCACTCAGAAATAATGGGG
65 TTGTGGAAAA-TTGGTATTTTAAAA-TAAAACCGGGGTTGGAGTATCCACTCAGAAATAACGGGG
* *
1478898 TTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCTT
128 TTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAACCGAGGTTGGAGTATCCCCT
* ** * *
1478963 CAAAAATAACAGGGTTGGAGTATCCTC-AGTTGTTGAAAATTGG
193 CGAAAATAATGGGGTTGGAGTATCCCCGA-TTGTGGAAAATTGG
** * *
1479006 CGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
1 TATTTTGGAAATAAAATCAGGGTTGAAGTATCC
1479039 TCGATTGTGA
Statistics
Matches: 429, Mismatches: 65, Indels: 24
0.83 0.13 0.05
Matches are distributed among these distances:
235 17 0.04
236 299 0.70
237 112 0.26
238 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (235 bp):
TATTTTGGAAATAAAATCAGGGTTGAAGTATCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
TGTGGAAAATTGGTATTTTAAAATAAAACCGGGGTTGGAGTATCCACTCAGAAATAACGGGGTTG
GAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAACCGAGGTTGGAGTATCCCCTCGA
AAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATTGG
Found at i:1479039 original size:51 final size:51
Alignment explanation
Indices: 1478974--1479091 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
1478964 AAAAATAACA
* * *
1478974 GGGTTGGAGTATCCTC-AGTTGTTG-AAAATTGGCGTTTTGGAAATAAAATCG
1 GGGTTGGAGTATCCTCGA-TTG-TGAAAAATTGGCGTCTTAGAAATAAAACCG
*
1479025 GGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTCTTAGAAATAAAACCG
1 GGGTTGGAGTATCCTCGATTGTGAAAAATTGGCGTCTTAGAAATAAAACCG
*
1479076 GGGTTAGAGTATCCTC
1 GGGTTGGAGTATCCTC
1479092 TCGAAAATAA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 2 0.03
51 57 0.95
52 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (51 bp):
GGGTTGGAGTATCCTCGATTGTGAAAAATTGGCGTCTTAGAAATAAAACCG
Found at i:1479046 original size:130 final size:130
Alignment explanation
Indices: 1478894--1479151 Score: 353
Period size: 130 Copynumber: 2.0 Consensus size: 130
1478884 CAGAAATAAT
* * *
1478894 GGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTCTTAGAAATAAAACCGAGGTTAGAGTATC
1478959 C-CTTCAAAAATAACAG-GGTTGGAGTATCC-TCAGTTGTTG-AAAATTGGCGTTTTGGAAATAA
66 CTC-TCAAAAATAA-AGAGGTTGGAGTATCCATCA-TTG-TGAAAAATTGGCGTTTTGGAAATAA
1479020 AATC
127 AATC
* *
1479024 GGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTCTTAGAAATAAAACCGGGGTTAGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTCTTAGAAATAAAACCGAGGTTAGAGTATC
* * * * * *
1479089 CTCTCGAAAATAATGAGGTTTGAGTATCCATGATTGTGAAAAATTTGTGTTTTGGAAATAAAA
66 CTCTCAAAAATAAAGAGGTTGGAGTATCCATCATTGTGAAAAATTGGCGTTTTGGAAATAAAA
1479152 CCAGGATTAA
Statistics
Matches: 113, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
129 3 0.03
130 107 0.95
131 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (130 bp):
GGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTCTTAGAAATAAAACCGAGGTTAGAGTATC
CTCTCAAAAATAAAGAGGTTGGAGTATCCATCATTGTGAAAAATTGGCGTTTTGGAAATAAAATC
Found at i:1479102 original size:209 final size:209
Alignment explanation
Indices: 1478813--1479250 Score: 570
Period size: 209 Copynumber: 2.1 Consensus size: 209
1478803 CTTCAGAAAT
* *
1478813 AACGGGGTTGGA-TATCCCCGATTGTGAAAATTTGGTGTTTTAAAAGTAAAACCGAGGTTAGAGT
1 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTCTTAAAAGTAAAACCGAGGTTAGAGT
* *
1478877 ATCCACTCAGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAA
66 ATCCACTCAGAAATAATGAGGTTGGAGTATCCACGATTGTGAAAAATTGGTGTTTTGGAAATAAA
* *
1478942 ACCGAGG-TT-GGAGTATC-CCTTCAAAAATAACAGGGTTGGAGTATC-CTC-AGTTGTTG-AAA
131 ACC-AGGATTAAGA-TATCTCC-TCAAAAATAACAGGGTTGGAGTATCTC-CAAATTG-TGAAAA
*
1479001 ATTGGCGTTTTGGAAATAA
191 ATTGGCGATTTGGAAATAA
* *
1479020 AATCGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTCTTAGAAA-TAAAACCGGGGTTAGA
1 AA-CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTCTTA-AAAGTAAAACCGAGGTTAGA
* * * *
1479084 GTATCCTCTC-GAAAATAATGAGGTTTGAGTATCCATGATTGTGAAAAATTTGTGTTTTGGAAAT
64 GTATCCACTCAG-AAATAATGAGGTTGGAGTATCCACGATTGTGAAAAATTGGTGTTTTGGAAAT
* **
1479148 AAAACCAGGATTAAGATATCTCCTCAGAAATAATGGGGTTGGAGTATCTCCAAATTGTGAAAAAT
128 AAAACCAGGATTAAGATATCTCCTCAAAAATAACAGGGTTGGAGTATCTCCAAATTGTGAAAAAT
*
1479213 TGGTGATTTGGAAATAA
193 TGGCGATTTGGAAATAA
*
1479230 AACTGAGGTTGGAGTATCCCC
1 AAC-GGGGTTGGAGTATCCCC
1479251 TCGAAAATAA
Statistics
Matches: 201, Mismatches: 19, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
207 2 0.01
208 14 0.07
209 136 0.68
210 49 0.24
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (209 bp):
AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTCTTAAAAGTAAAACCGAGGTTAGAGT
ATCCACTCAGAAATAATGAGGTTGGAGTATCCACGATTGTGAAAAATTGGTGTTTTGGAAATAAA
ACCAGGATTAAGATATCTCCTCAAAAATAACAGGGTTGGAGTATCTCCAAATTGTGAAAAATTGG
CGATTTGGAAATAA
Found at i:1479114 original size:79 final size:79
Alignment explanation
Indices: 1479024--1479496 Score: 534
Period size: 79 Copynumber: 6.0 Consensus size: 79
1479014 AAATAAAATC
* *
1479024 GGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTCTTAGAAATAAAACCGGGGTTAGAGTATC
1 GGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTCTTGGAAATAAAACCGAGGTTAGAGTATC
*
1479089 CTCTCGAAAATAAT
66 CCCTCGAAAATAAT
* * * *
1479103 GAGGTTTGAGTATCCAT-GATTGTGAAAAATTTGTGTTTTGGAAATAAAACC-AGGATTA-AGAT
1 GGGGTTGGAGTATCC-TCGATTGTGAAAAATTGGTGTCTTGGAAATAAAACCGAGG-TTAGAG-T
*
1479165 ATCTCCTC-AGAAATAAT
63 ATCCCCTCGA-AAATAAT
* * *
1479182 GGGGTTGGAGTAT-CTCCAAATTGTGAAAAATTGGTGAT-TTGGAAATAAAACTGAGGTTGGAGT
1 GGGGTTGGAGTATCCT-C-GATTGTGAAAAATTGGTG-TCTTGGAAATAAAACCGAGGTTAGAGT
*
1479245 ATCCCCTCGAAAATAAC
63 ATCCCCTCGAAAATAAT
* * * * *
1479262 GGGGTTGGAGTATTCC-CGTTTGTGAAAAATTGGTATCTTGGAAATAAAACCGATGTTGGACTAT
1 GGGGTTGGAGTA-TCCTCGATTGTGAAAAATTGGTGTCTTGGAAATAAAACCGAGGTTAGAGTAT
1479326 CCCCTCGAAAATAAT
65 CCCCTCGAAAATAAT
*
1479341 -GGGTTGGAGTAT-CTCCGATTGTGAAAAATTGGTGTCTTGGAAA-ATAAACCAAGGTTAGAGTA
1 GGGGTTGGAGTATCCT-CGATTGTGAAAAATTGGTGTCTTGGAAATA-AAACCGAGGTTAGAGTA
* * *
1479403 TCCCTTCAAAAATAAC
64 TCCCCTCGAAAATAAT
* * * * * *
1479419 GGGGTTAGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGAAAATAAAACCGGGGTTAGAGTATC
1 GGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTCTTGGAAATAAAACCGAGGTTAGAGTATC
*
1479484 CCCTCGGAAATAA
66 CCCTCGAAAATAA
1479497 AAACATGAAT
Statistics
Matches: 332, Mismatches: 42, Indels: 40
0.80 0.10 0.10
Matches are distributed among these distances:
76 1 0.00
77 3 0.01
78 70 0.21
79 188 0.57
80 61 0.18
81 8 0.02
82 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (79 bp):
GGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTCTTGGAAATAAAACCGAGGTTAGAGTATC
CCCTCGAAAATAAT
Found at i:1479419 original size:157 final size:157
Alignment explanation
Indices: 1479024--1479496 Score: 557
Period size: 157 Copynumber: 3.0 Consensus size: 157
1479014 AAATAAAATC
* *
1479024 GGGGTTGGAGTATC-CTCGATTGTGAAAAATTGGTGTCTTAGAAATAAAACCGGGGTTAGAGTAT
1 GGGGTTGGAGTATCTC-CGATTGTGAAAAATTGGTGTCTTGGAAATAAAACCGAGGTTAGAGTAT
* * * * *
1479088 -CCTCTCGAAAATAATGAGGTTTGAGTA-TCCATGATTGTGAAAAATTTGTGTTTTGGAAATAAA
65 CCCT-TCGAAAATAACGGGGTTAGAGTATTCC-CGATTGTGAAAAATTAGTGTTTTGGAAATAAA
* *
1479151 ACCAGGAT-TAAGATATCTCCTC-AGAAATAAT
128 ACC--GATGTTAGATATCCCCTCGA-AAATAAT
* * *
1479182 GGGGTTGGAGTATCTCCAAATTGTGAAAAATTGGTGAT-TTGGAAATAAAACTGAGGTTGGAGTA
1 GGGGTTGGAGTATCTCC-GATTGTGAAAAATTGGTG-TCTTGGAAATAAAACCGAGGTTAGAGTA
* * * * * *
1479246 TCCCCTCGAAAATAACGGGGTTGGAGTATTCCCGTTTGTGAAAAATTGGTATCTTGGAAATAAAA
64 TCCCTTCGAAAATAACGGGGTTAGAGTATTCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAA
*
1479311 CCGATGTTGGACTATCCCCTCGAAAATAAT
129 CCGATGTTAGA-TATCCCCTCGAAAATAAT
*
1479341 -GGGTTGGAGTATCTCCGATTGTGAAAAATTGGTGTCTTGGAAA-ATAAACCAAGGTTAGAGTAT
1 GGGGTTGGAGTATCTCCGATTGTGAAAAATTGGTGTCTTGGAAATA-AAACCGAGGTTAGAGTAT
* * *
1479404 CCCTTCAAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGAAAATAAAAC
65 CCCTTCGAAAATAACGGGGTTAGAGTATTCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAAC
** *
1479469 CGGGGTTAGAGTATCCCCTCGGAAATAA
130 CGATGTTAGA-TATCCCCTCGAAAATAA
1479497 AAACATGAAT
Statistics
Matches: 270, Mismatches: 35, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
156 2 0.01
157 121 0.45
158 34 0.13
159 106 0.39
160 7 0.03
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (157 bp):
GGGGTTGGAGTATCTCCGATTGTGAAAAATTGGTGTCTTGGAAATAAAACCGAGGTTAGAGTATC
CCTTCGAAAATAACGGGGTTAGAGTATTCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAACC
GATGTTAGATATCCCCTCGAAAATAAT
Found at i:1481338 original size:21 final size:21
Alignment explanation
Indices: 1481314--1481357 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1481304 GTGGTGGTTT
*
1481314 TTGGA-GCTACGGGAATGAGTG
1 TTGGAGGCTAAGGGAAT-AGTG
*
1481335 TTGGAGGCTAATGGAATAGTG
1 TTGGAGGCTAAGGGAATAGTG
1481356 TT
1 TT
1481358 TTTTTTGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.25, C:0.07, G:0.39, T:0.30
Consensus pattern (21 bp):
TTGGAGGCTAAGGGAATAGTG
Found at i:1481903 original size:20 final size:20
Alignment explanation
Indices: 1481878--1481999 Score: 91
Period size: 20 Copynumber: 5.6 Consensus size: 20
1481868 TAAAACCCAG
1481878 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
*
1481898 AATGTATCGATACATCTGGGTAAAACC
1 AATGTATCGATACA-AT--G---AA-C
** *
1481925 AATAATGTATCGGCACAATGAAT
1 ---AATGTATCGATACAATGAAC
*
1481948 AATGTATCGATACAATGAAT
1 AATGTATCGATACAATGAAC
* *
1481968 AATGTATTGATATAATGAAC
1 AATGTATCGATACAATGAAC
1481988 AATGTATCGATA
1 AATGTATCGATA
1482000 TATTTGGGTA
Statistics
Matches: 81, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
20 60 0.74
21 1 0.01
23 1 0.01
24 2 0.02
26 2 0.02
27 2 0.02
29 1 0.01
30 12 0.15
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATGAAC
Found at i:1481915 original size:50 final size:50
Alignment explanation
Indices: 1481829--1482051 Score: 216
Period size: 50 Copynumber: 4.7 Consensus size: 50
1481819 AAAATGCCTG
* * * *
1481829 AATGTATCGATA-AATAAAAAATGCATCGATACATCTGGGTAAAACCCAG
1 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCAT
*
1481878 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCAAT
1 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCAT
** * *
1481928 AATGTATCGGCACAATGAATAATGTATCGATACA-AT--G----A---AT
1 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCAT
* * * *
1481968 AATGTATTGATATAATGAACAATGTATCGATATATTTGGGTAAAACCCAT
1 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCAT
* * * *
1482018 AATATATCGATATAATGAATAATATATCGATACA
1 AATGTATCGATACAATGAACAATGTATCGATACA
1482052 AATTGTGAAA
Statistics
Matches: 142, Mismatches: 21, Indels: 21
0.77 0.11 0.11
Matches are distributed among these distances:
40 30 0.21
41 1 0.01
43 2 0.01
47 2 0.01
49 13 0.09
50 94 0.66
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (50 bp):
AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCCAT
Found at i:1482000 original size:20 final size:20
Alignment explanation
Indices: 1481925--1482001 Score: 100
Period size: 20 Copynumber: 3.9 Consensus size: 20
1481915 GGGTAAAACC
** *
1481925 AATAATGTATCGGCACAATG
1 AATAATGTATCGATATAATG
*
1481945 AATAATGTATCGATACAATG
1 AATAATGTATCGATATAATG
*
1481965 AATAATGTATTGATATAATG
1 AATAATGTATCGATATAATG
*
1481985 AACAATGTATCGATATA
1 AATAATGTATCGATATA
1482002 TTTGGGTAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (20 bp):
AATAATGTATCGATATAATG
Found at i:1482035 original size:90 final size:90
Alignment explanation
Indices: 1481878--1482052 Score: 260
Period size: 90 Copynumber: 1.9 Consensus size: 90
1481868 TAAAACCCAG
* *
1481878 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCAATAATGTATCGGCACAA
1 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCAATAATATATCGACACAA
*
1481943 TGAATAATGTATCGATACAATGAAT
66 TGAATAATATATCGATACAATGAAT
* * * * * * *
1481968 AATGTATTGATATAATGAACAATGTATCGATATATTTGGGTAAAACCCATAATATATCGATATAA
1 AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCAATAATATATCGACACAA
1482033 TGAATAATATATCGATACAA
66 TGAATAATATATCGATACAA
1482053 ATTGTGAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 75 1.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (90 bp):
AATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAAAACCAATAATATATCGACACAA
TGAATAATATATCGATACAATGAAT
Found at i:1484493 original size:20 final size:20
Alignment explanation
Indices: 1484468--1484523 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
1484458 GTTGGGTACA
1484468 ATGTATCGATACATTTTACC-
1 ATGTATCGATACATTTT-CCT
* *
1484488 ATGTATCGATACAATGTCCT
1 ATGTATCGATACATTTTCCT
1484508 ATGTATCGATACATTT
1 ATGTATCGATACATTT
1484524 CACTTAGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTTTCCT
Found at i:1484592 original size:19 final size:20
Alignment explanation
Indices: 1484549--1484601 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
1484539 CTGTCAGTCT
*
1484549 CATGTATTGATACAATTGAG
1 CATGTATCGATACAATTGAG
*
1484569 TATGTATCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
1484588 CATGTATCGATACA
1 CATGTATCGATACA
1484602 TCTGGATGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:1484987 original size:2 final size:2
Alignment explanation
Indices: 1484980--1485015 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
1484970 AGAAATCTTT
*
1484980 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1485016 CACTTTGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1489868 original size:40 final size:40
Alignment explanation
Indices: 1489802--1489879 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
1489792 AAATTAGATG
*
1489802 CAAAGATTAACTTTACCGAATATATACAAAGAGATAAATA
1 CAAAGATTAACTTTACCGAATATATACAAAAAGATAAATA
*** *
1489842 CAAAGATTAACTTTATTTAATCTATACAAAAAGATAAA
1 CAAAGATTAACTTTACCGAATATATACAAAAAGATAAA
1489880 AAATTAACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.53, C:0.12, G:0.08, T:0.28
Consensus pattern (40 bp):
CAAAGATTAACTTTACCGAATATATACAAAAAGATAAATA
Found at i:1489943 original size:18 final size:17
Alignment explanation
Indices: 1489903--1489945 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
1489893 GATTTTCTAT
*
1489903 TTATCTTTTGAAAATTTA
1 TTATC-TTTCAAAATTTA
*
1489921 ATATCTTTCAAAATTATA
1 TTATCTTTCAAAATT-TA
1489939 TTATCTT
1 TTATCTT
1489946 AATGATTGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.53
Consensus pattern (17 bp):
TTATCTTTCAAAATTTA
Found at i:1490452 original size:8 final size:8
Alignment explanation
Indices: 1490439--1490463 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
1490429 TACAAAATAT
1490439 ATATGTTA
1 ATATGTTA
1490447 ATATGTTA
1 ATATGTTA
1490455 ATATGTTA
1 ATATGTTA
1490463 A
1 A
1490464 GAATTGCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (8 bp):
ATATGTTA
Found at i:1491004 original size:3 final size:3
Alignment explanation
Indices: 1490996--1491037 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
1490986 TCCTTGTCCT
1490996 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1491038 ATCTTTTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:1491653 original size:28 final size:29
Alignment explanation
Indices: 1491622--1491676 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
1491612 TTTTTATACA
1491622 TTTTTA-TAATTAAATT-TAATTAAAATT
1 TTTTTATTAATTAAATTATAATTAAAATT
*
1491649 TTTTTATTAATTAAATTATAATTTAAAT
1 TTTTTATTAATTAAATTATAATTAAAAT
1491677 CTCTAATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.24
28 10 0.40
29 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
TTTTTATTAATTAAATTATAATTAAAATT
Found at i:1492741 original size:14 final size:13
Alignment explanation
Indices: 1492708--1492750 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
1492698 ATTCATTTAA
*
1492708 TTATATTTAAAAAT
1 TTATATTT-AAATT
1492722 TTATATTTAAATT
1 TTATATTTAAATT
1492735 TTAATATTTATAATT
1 TT-ATATTTA-AATT
1492750 T
1 T
1492751 ATTTATCTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 6 0.23
14 15 0.58
15 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTATATTTAAATT
Done.