Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold140
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3130556
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82166 characters in sequence are not A, C, G, or T
File 13 of 20
Found at i:2011845 original size:20 final size:19
Alignment explanation
Indices: 2011820--2011889 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
2011810 TTTATGTTAT
*
2011820 TTTTATTTTTAATTTTTTAA
1 TTTTATTTTT-ATTTTTTTA
*
2011840 TTTTATATTTATGTTTTTTA
1 TTTTATTTTTAT-TTTTTTA
**
2011860 TCGTATTTTTATTATTTTTA
1 TTTTATTTTTATT-TTTTTA
*
2011880 TATTATTTTT
1 TTTTATTTTT
2011890 GTGTCGTATA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
19 3 0.07
20 38 0.93
ACGTcount: A:0.21, C:0.01, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTTATTTTTATTTTTTTA
Found at i:2011845 original size:26 final size:24
Alignment explanation
Indices: 2011800--2011856 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 24
2011790 CCTACATGTA
*
2011800 ATTTTTATTTTTTATGTTATTTTT
1 ATTTTTATTTTTTATGTTATATTT
*
2011824 ATTTTTAATTTTTTAATTTTATATTT
1 ATTTTT-ATTTTTT-ATGTTATATTT
2011850 ATGTTTT
1 AT-TTTT
2011857 TTATCGTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 6 0.21
25 7 0.25
26 11 0.39
27 4 0.14
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (24 bp):
ATTTTTATTTTTTATGTTATATTT
Found at i:2011897 original size:33 final size:34
Alignment explanation
Indices: 2011832--2011898 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
2011822 TTATTTTTAA
*
2011832 TTTTTTAATTTTATATTTATGTTTTTTATCGTAT
1 TTTTTTAATTTTATATTTATGTTTTGTATCGTAT
* *
2011866 TTTTATTATTTTTATA-TTAT-TTTTGTGTCGTAT
1 TTTT-TTAATTTTATATTTATGTTTTGTATCGTAT
2011899 ATTCTTGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 11 0.38
34 8 0.28
35 10 0.34
ACGTcount: A:0.19, C:0.03, G:0.07, T:0.70
Consensus pattern (34 bp):
TTTTTTAATTTTATATTTATGTTTTGTATCGTAT
Found at i:2012023 original size:13 final size:13
Alignment explanation
Indices: 2012005--2012053 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 13
2011995 TTGTTCGTAT
2012005 TATTTTTATATTA
1 TATTTTTATATTA
2012018 TATTTTTTTATATTA
1 TA--TTTTTATATTA
* *
2012033 TATTTTCATGTTA
1 TATTTTTATATTA
2012046 T-TTTTTAT
1 TATTTTTAT
2012054 GTCATGTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 6 0.19
13 12 0.39
15 13 0.42
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (13 bp):
TATTTTTATATTA
Found at i:2012027 original size:15 final size:15
Alignment explanation
Indices: 2012002--2012038 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
2011992 ATCTTGTTCG
2012002 TATTATTTTTATATTA
1 TATT-TTTTTATATTA
2012018 TATTTTTTTATATTA
1 TATTTTTTTATATTA
2012033 TATTTT
1 TATTTT
2012039 CATGTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TATTTTTTTATATTA
Found at i:2020618 original size:2 final size:2
Alignment explanation
Indices: 2020611--2020655 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
2020601 CTTCAGGTGC
2020611 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
2020653 GA G
1 GA G
2020656 GGAGGTTTGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:2028088 original size:21 final size:22
Alignment explanation
Indices: 2028063--2028107 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
2028053 CTAAATAAAA
*
2028063 ATTTGACAATTTTA-TAAATTT
1 ATTTGACAATTTTAGCAAATTT
**
2028084 ATTTGTGAATTTTAGCAAATTT
1 ATTTGACAATTTTAGCAAATTT
2028106 AT
1 AT
2028108 CAACAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (22 bp):
ATTTGACAATTTTAGCAAATTT
Found at i:2028543 original size:25 final size:24
Alignment explanation
Indices: 2028507--2028572 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
2028497 GCCTAAGCCA
2028507 AATAT-TATTTATTTTTTAATTATAT
1 AATATATA-TTATTTTTTAATTAT-T
*
2028532 AATATATATTATTTTATAATTATT
1 AATATATATTATTTTTTAATTATT
* *
2028556 TATACTATGTTATTTTT
1 AATA-TATATTATTTTT
2028573 ATCATATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
24 4 0.11
25 29 0.83
26 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
AATATATATTATTTTTTAATTATT
Found at i:2028628 original size:26 final size:26
Alignment explanation
Indices: 2028592--2028664 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
2028582 AAAATATATA
*
2028592 ATATTATATTATAAATATTAAAAAAT
1 ATATTAAATTATAAATATTAAAAAAT
** **
2028618 ATATTAAATTATTTATATTTTAAAAT
1 ATATTAAATTATAAATATTAAAAAAT
* * *
2028644 TTAATAAAATA-AAATATTAAA
1 ATATTAAATTATAAATATTAAA
2028665 TTAAAAACAT
Statistics
Matches: 35, Mismatches: 12, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
25 6 0.17
26 29 0.83
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATATTAAATTATAAATATTAAAAAAT
Found at i:2031876 original size:13 final size:13
Alignment explanation
Indices: 2031860--2031884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2031850 TTTTTTTAAA
2031860 TATTTATATTTAG
1 TATTTATATTTAG
2031873 TATTTATATTTA
1 TATTTATATTTA
2031885 AAAAATATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TATTTATATTTAG
Found at i:2033897 original size:2 final size:2
Alignment explanation
Indices: 2033890--2033943 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
2033880 ACTTCTAGAC
2033890 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
2033932 AT AT AC AT AT AT
1 AT AT AT AT AT AT
2033944 TCTTGATATA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2041951 original size:29 final size:29
Alignment explanation
Indices: 2041896--2041951 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
2041886 GAAAAAAACA
*
2041896 TTTTTTCTCTGGTTTAGTTTCATCACTTC
1 TTTTTTCTCTGGTTTAGTTTCACCACTTC
*
2041925 TTTTTTCTCTGGTTTAGTTTTACCACT
1 TTTTTTCTCTGGTTTAGTTTCACCACT
2041952 CTTCAATCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.11, C:0.20, G:0.11, T:0.59
Consensus pattern (29 bp):
TTTTTTCTCTGGTTTAGTTTCACCACTTC
Found at i:2043281 original size:2 final size:2
Alignment explanation
Indices: 2043276--2043300 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2043266 ATGGGGGGGG
2043276 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
2043301 CCCATCTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:2048936 original size:20 final size:21
Alignment explanation
Indices: 2048911--2048959 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
2048901 ATAATTTGAG
*
2048911 TTAATTTAAAATATTAT-TTT
1 TTAATTTAAAATAATATATTT
2048931 TTAA-TTAAAATAATATATTT
1 TTAATTTAAAATAATATATTT
2048951 TT-ATTTAAA
1 TTAATTTAAA
2048960 TTTAATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TTAATTTAAAATAATATATTT
Found at i:2048938 original size:24 final size:26
Alignment explanation
Indices: 2048911--2048975 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 26
2048901 ATAATTTGAG
2048911 TTAATTTAAAATATTATTT-TTT-AA-
1 TTAATTTAAAATATT-TTTATTTAAAT
** *
2048935 TTAAAATAATATATTTTTATTTAAAT
1 TTAATTTAAAATATTTTTATTTAAAT
2048961 TTAATTATAAAATAT
1 TTAATT-TAAAATAT
2048976 AATATTAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
23 3 0.10
24 15 0.48
25 2 0.06
26 4 0.13
27 7 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TTAATTTAAAATATTTTTATTTAAAT
Found at i:2048960 original size:19 final size:19
Alignment explanation
Indices: 2048911--2048960 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
2048901 ATAATTTGAG
*
2048911 TTAATTTAAAATATTATTTT
1 TTAATTT-AAATAATATTTT
*
2048931 TTAATTAAAATAATATATTT
1 TTAATTTAAATAATAT-TTT
2048951 TT-ATTTAAAT
1 TTAATTTAAAT
2048961 TTAATTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTAATTTAAATAATATTTT
Found at i:2051079 original size:21 final size:21
Alignment explanation
Indices: 2051061--2051141 Score: 126
Period size: 21 Copynumber: 3.9 Consensus size: 21
2051051 TATTAAAAGT
2051061 TGCATTTTTTCATCCAAAAAA
1 TGCATTTTTTCATCCAAAAAA
2051082 TGCATTTTTTCATCCAAAAAA
1 TGCATTTTTTCATCCAAAAAA
**
2051103 TGCATTTTTTCATCCAACCAA
1 TGCATTTTTTCATCCAAAAAA
**
2051124 TGCATCATTTCATCCAAA
1 TGCATTTTTTCATCCAAA
2051142 TATATCTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (21 bp):
TGCATTTTTTCATCCAAAAAA
Found at i:2056162 original size:21 final size:21
Alignment explanation
Indices: 2056144--2056199 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
2056134 TATTAAAAGT
*
2056144 TGCATTTTTTCATCCAAAAAA
1 TGCATTCTTTCATCCAAAAAA
**
2056165 TGCATTCTTTCATCCAATCAA
1 TGCATTCTTTCATCCAAAAAA
2056186 TGCA-TCATTTCATC
1 TGCATTC-TTTCATC
2056200 TAAATATATC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 2 0.06
21 29 0.94
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.39
Consensus pattern (21 bp):
TGCATTCTTTCATCCAAAAAA
Found at i:2058595 original size:11 final size:11
Alignment explanation
Indices: 2058579--2058625 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
2058569 AAGGGAATGG
2058579 AAAAGAAAGGA
1 AAAAGAAAGGA
2058590 AAAAGAAAGG-
1 AAAAGAAAGGA
* *
2058600 AAAGGAGAGGA
1 AAAAGAAAGGA
*
2058611 AAGAGAAAGGA
1 AAAAGAAAGGA
2058622 AAAA
1 AAAA
2058626 AGAGGTAGGA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (11 bp):
AAAAGAAAGGA
Found at i:2058603 original size:5 final size:5
Alignment explanation
Indices: 2058552--2058623 Score: 51
Period size: 5 Copynumber: 14.6 Consensus size: 5
2058542 GGCGGGGAGA
* * * * *
2058552 AAAGG -AAGG -AA-G AAAAG AAGGG AATGG AAAAG AAAGG AAAAAG AAAGG
1 AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG -AAAGG AAAGG
*
2058600 AAAGG AGAGG AAAGAG AAAGG AAA
1 AAAGG AAAGG AAAG-G AAAGG AAA
2058624 AAAGAGGTAG
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
3 1 0.02
4 8 0.15
5 35 0.66
6 9 0.17
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.01
Consensus pattern (5 bp):
AAAGG
Found at i:2058610 original size:21 final size:21
Alignment explanation
Indices: 2058577--2058624 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
2058567 AGAAGGGAAT
2058577 GGAAAAGAAAGGAAAAAGAAA
1 GGAAAAGAAAGGAAAAAGAAA
* * *
2058598 GGAAAGGAGAGGAAAGAGAAA
1 GGAAAAGAAAGGAAAAAGAAA
2058619 GGAAAA
1 GGAAAA
2058625 AAGAGGTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (21 bp):
GGAAAAGAAAGGAAAAAGAAA
Found at i:2058612 original size:26 final size:27
Alignment explanation
Indices: 2058564--2058618 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
2058554 AGGAAGGAAG
* *
2058564 AAAAGAAGGGAATGGAAAAGAAAG-GA
1 AAAAGAAAGGAAAGGAAAAGAAAGAGA
* *
2058590 AAAAGAAAGGAAAGGAGAGGAAAGAGA
1 AAAAGAAAGGAAAGGAAAAGAAAGAGA
2058617 AA
1 AA
2058619 GGAAAAAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (27 bp):
AAAAGAAAGGAAAGGAAAAGAAAGAGA
Found at i:2058629 original size:21 final size:21
Alignment explanation
Indices: 2058577--2058639 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
2058567 AGAAGGGAAT
*
2058577 GGAAAAGAA-AGGAAAAAGAAA
1 GGAAAA-AAGAGGAAAGAGAAA
**
2058598 GGAAAGGAGAGGAAAGAGAAA
1 GGAAAAAAGAGGAAAGAGAAA
* *
2058619 GGAAAAAAGAGGTAGGAGAAA
1 GGAAAAAAGAGGAAAGAGAAA
2058640 AAATATGGCA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 1 0.03
21 33 0.97
ACGTcount: A:0.62, C:0.00, G:0.37, T:0.02
Consensus pattern (21 bp):
GGAAAAAAGAGGAAAGAGAAA
Found at i:2059477 original size:13 final size:13
Alignment explanation
Indices: 2059459--2059484 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2059449 TTTATATTTA
2059459 CTAGCAAGTCAAT
1 CTAGCAAGTCAAT
2059472 CTAGCAAGTCAAT
1 CTAGCAAGTCAAT
2059485 TTAATATCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (13 bp):
CTAGCAAGTCAAT
Found at i:2060195 original size:24 final size:25
Alignment explanation
Indices: 2060161--2060212 Score: 97
Period size: 24 Copynumber: 2.1 Consensus size: 25
2060151 CTAATACTTA
2060161 ATATACTCTCTCTCTCTCTATATAT
1 ATATACTCTCTCTCTCTCTATATAT
2060186 ATATA-TCTCTCTCTCTCTATATAT
1 ATATACTCTCTCTCTCTCTATATAT
2060210 ATA
1 ATA
2060213 GATATGTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.48
Consensus pattern (25 bp):
ATATACTCTCTCTCTCTCTATATAT
Found at i:2061329 original size:37 final size:36
Alignment explanation
Indices: 2061288--2061364 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 36
2061278 ATATTTAAAA
*
2061288 TTATCAAATTTATTATAAACATTTTTAAGAGTTTTT
1 TTATCAAATCTATTATAAACATTTTTAAGAGTTTTT
2061324 GTTATCAAATCTATTATAAACATTTTTAAGAGTTTTT
1 -TTATCAAATCTATTATAAACATTTTTAAGAGTTTTT
2061361 TTAT
1 TTAT
2061365 ATTATATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 4 0.10
37 35 0.90
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (36 bp):
TTATCAAATCTATTATAAACATTTTTAAGAGTTTTT
Found at i:2061956 original size:22 final size:23
Alignment explanation
Indices: 2061905--2061957 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
2061895 AATATTCATT
* * *
2061905 TTATGTTTTTATTATTTTTTCGA
1 TTATTTTTTTATTATATTTTCAA
*
2061928 -TAATTTTTTATTATATTTT-AA
1 TTATTTTTTTATTATATTTTCAA
2061949 TTATTTTTT
1 TTATTTTTT
2061958 GTATAAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.72
Consensus pattern (23 bp):
TTATTTTTTTATTATATTTTCAA
Found at i:2065425 original size:2 final size:2
Alignment explanation
Indices: 2065418--2065460 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
2065408 TATGTTCCAT
2065418 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2065460 T
1 T
2065461 TACACGCACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2065945 original size:1 final size:1
Alignment explanation
Indices: 2065939--2065966 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
2065929 GGGTGTAAGA
2065939 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
2065967 CTGTAAAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:2070965 original size:13 final size:12
Alignment explanation
Indices: 2070943--2070988 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
2070933 ACCTTCACTG
2070943 TTTCAAATTGAA
1 TTTCAAATTGAA
*
2070955 TTTCAAAATTGACTG
1 TTTC-AAATTGA--A
2070970 TTTCAAATTGAA
1 TTTCAAATTGAA
2070982 TTTCAAA
1 TTTCAAA
2070989 AATGGAGCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 11 0.38
13 7 0.24
14 7 0.24
15 4 0.14
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (12 bp):
TTTCAAATTGAA
Found at i:2070979 original size:14 final size:14
Alignment explanation
Indices: 2070939--2070980 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
2070929 TGCAACCTTC
2070939 ACTGTTTCAAATTG
1 ACTGTTTCAAATTG
*
2070953 A--ATTTCAAAATTG
1 ACTGTTTC-AAATTG
2070966 ACTGTTTCAAATTG
1 ACTGTTTCAAATTG
2070980 A
1 A
2070981 ATTTCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
12 4 0.17
13 7 0.30
14 8 0.35
15 4 0.17
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (14 bp):
ACTGTTTCAAATTG
Found at i:2070991 original size:14 final size:13
Alignment explanation
Indices: 2070943--2070989 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
2070933 ACCTTCACTG
2070943 TTTC-AAATTGAA
1 TTTCAAAATTGAA
*
2070955 TTTCAAAATTGACTG
1 TTTCAAAATTGA--A
2070970 TTTC-AAATTGAA
1 TTTCAAAATTGAA
2070982 TTTCAAAA
1 TTTCAAAA
2070990 ATGGAGCTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
12 8 0.28
13 10 0.34
14 7 0.24
15 4 0.14
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (13 bp):
TTTCAAAATTGAA
Found at i:2072271 original size:27 final size:27
Alignment explanation
Indices: 2072233--2072289 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
2072223 CAACTGTTGC
2072233 CAGCAAATTTTGAAATTCAATTTGAAA
1 CAGCAAATTTTGAAATTCAATTTGAAA
*
2072260 CAGCCAATTTTGAAATTCAATTTGAAA
1 CAGCAAATTTTGAAATTCAATTTGAAA
2072287 CAG
1 CAG
2072290 TGAAGGTTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (27 bp):
CAGCAAATTTTGAAATTCAATTTGAAA
Found at i:2074286 original size:2 final size:2
Alignment explanation
Indices: 2074279--2074308 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2074269 TCAAATATCA
2074279 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2074309 TACGAGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2074602 original size:2 final size:2
Alignment explanation
Indices: 2074595--2074634 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
2074585 ACACTCCTAC
2074595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2074635 TTAGTATTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2076501 original size:18 final size:18
Alignment explanation
Indices: 2076478--2076517 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
2076468 AAGCCTGTAG
*
2076478 TTCTGGGGTTTGTCATGC
1 TTCTGGGGTTTATCATGC
2076496 TTCTGGGGTTTATCATGC
1 TTCTGGGGTTTATCATGC
2076514 TTCT
1 TTCT
2076518 CTCCTTAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.17, G:0.28, T:0.47
Consensus pattern (18 bp):
TTCTGGGGTTTATCATGC
Found at i:2076843 original size:2 final size:2
Alignment explanation
Indices: 2076836--2076881 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
2076826 AATTATTGTA
2076836 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2076878 AT AT
1 AT AT
2076882 TGGAAGCATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2079815 original size:11 final size:11
Alignment explanation
Indices: 2079777--2079820 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
2079767 TCCCAATTTA
2079777 ATTATATTTTT
1 ATTATATTTTT
2079788 -TTA-ATTTTT
1 ATTATATTTTT
*
2079797 ATAAATATTTTT
1 AT-TATATTTTT
2079809 ATTATATTTTT
1 ATTATATTTTT
2079820 A
1 A
2079821 AGTTTTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
9 6 0.21
10 4 0.14
11 10 0.36
12 8 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTATATTTTT
Found at i:2080496 original size:21 final size:22
Alignment explanation
Indices: 2080464--2080504 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
2080454 TCTCTCTCTC
2080464 TCTCTCCACTTTAT-TTTTTCTT
1 TCTCTCCACTTT-TGTTTTTCTT
2080486 TCTCT-CACTTTTGTTTTTC
1 TCTCTCCACTTTTGTTTTTC
2080505 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.07, C:0.27, G:0.02, T:0.63
Consensus pattern (22 bp):
TCTCTCCACTTTTGTTTTTCTT
Found at i:2080502 original size:22 final size:22
Alignment explanation
Indices: 2080464--2080508 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
2080454 TCTCTCTCTC
*
2080464 TCTCTCCACTTTATTTTTTCTT
1 TCTCTCCACTTTATTTTTCCTT
*
2080486 TCTCT-CACTTTTGTTTTTCCTT
1 TCTCTCCAC-TTTATTTTTCCTT
2080508 T
1 T
2080509 TTCTTTTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.07, C:0.27, G:0.02, T:0.64
Consensus pattern (22 bp):
TCTCTCCACTTTATTTTTCCTT
Found at i:2080582 original size:13 final size:13
Alignment explanation
Indices: 2080564--2080590 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2080554 TGGATTCTTC
2080564 TTTTATTTTATTT
1 TTTTATTTTATTT
2080577 TTTTATTTTATTT
1 TTTTATTTTATTT
2080590 T
1 T
2080591 GATATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTATTTTATTT
Found at i:2081583 original size:25 final size:25
Alignment explanation
Indices: 2081469--2081570 Score: 71
Period size: 31 Copynumber: 3.7 Consensus size: 25
2081459 AAGAAAGAAT
* *
2081469 TATAT-ATTTTAAAATTAATATGAATA
1 TATATAATATTAAAATTTATAT-AA-A
* *
2081495 TATAAATATATTAAAATTTATAAAAA
1 TATATA-ATATTAAAATTTATATAAA
2081521 GTAAATTATTAAATATTAAAATTTATATAAA
1 -T--A-TA-T-AATATTAAAATTTATATAAA
2081552 TATATAATATTTAAAATTT
1 TATATAATA-TTAAAATTT
2081571 TATTATAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
25 4 0.07
26 15 0.25
27 5 0.08
28 14 0.23
29 1 0.02
30 3 0.05
31 18 0.30
32 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
TATATAATATTAAAATTTATATAAA
Found at i:2081585 original size:44 final size:44
Alignment explanation
Indices: 2081526--2081611 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
2081516 AAAAAGTAAA
* * *
2081526 TTATTAAATATTAAAATTTATATAAATATATAATATT-TAAAATT
1 TTATTAAATATTAAAAATAATATAAAAATATAA-ATTATAAAATT
2081570 TTATTATAATA-TAAAAATAATATAAAAATATAAATTATAAAA
1 TTATTA-AATATTAAAAATAATATAAAAATATAAATTATAAAA
2081612 AATAAAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 3 0.08
44 30 0.81
45 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (44 bp):
TTATTAAATATTAAAAATAATATAAAAATATAAATTATAAAATT
Found at i:2081591 original size:11 final size:11
Alignment explanation
Indices: 2081575--2081599 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2081565 AAATTTTATT
2081575 ATAATATAAAA
1 ATAATATAAAA
2081586 ATAATATAAAA
1 ATAATATAAAA
2081597 ATA
1 ATA
2081600 TAAATTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:2081616 original size:14 final size:13
Alignment explanation
Indices: 2081577--2081617 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 13
2081567 ATTTTATTAT
2081577 AATAT-AAAAAT-
1 AATATAAAAAATA
2081588 AATATAAAAATATA
1 AATATAAAAA-ATA
2081602 AATTATAAAAAATA
1 AA-TATAAAAAATA
2081616 AA
1 AA
2081618 AATATTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 5 0.19
12 4 0.15
13 2 0.08
14 7 0.27
15 8 0.31
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AATATAAAAAATA
Found at i:2081632 original size:24 final size:26
Alignment explanation
Indices: 2081571--2081632 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 26
2081561 TTTAAAATTT
*
2081571 TATTATAATATAAAAATAATATAAAAA
1 TATTAT-ATATATAAATAATATAAAAA
*
2081598 TA-TAAAT-TATAAA-AA-ATAAAAA
1 TATTATATATATAAATAATATAAAAA
2081620 TATTATATATATA
1 TATTATATATATA
2081633 TATAGAGAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
22 9 0.30
23 6 0.20
24 9 0.30
25 2 0.07
26 2 0.07
27 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (26 bp):
TATTATATATATAAATAATATAAAAA
Found at i:2085099 original size:14 final size:14
Alignment explanation
Indices: 2085080--2085112 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2085070 TAAATATATA
2085080 TTATTT-TATTTATT
1 TTATTTGTATTT-TT
2085094 TTATTTGTATTTTT
1 TTATTTGTATTTTT
2085108 TTATT
1 TTATT
2085113 GTAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTATTTGTATTTTT
Found at i:2085613 original size:1 final size:1
Alignment explanation
Indices: 2085609--2085636 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
2085599 TTTTTTTGGA
2085609 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
2085637 CTTGTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:2091547 original size:17 final size:18
Alignment explanation
Indices: 2091516--2091563 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
2091506 ATGTCAAATC
2091516 ATTATGAAAAAATAA-AAA
1 ATTAT-AAAAAATAATAAA
2091534 ATT-TAAAAATATAATAAA
1 ATTATAAAAA-ATAATAAA
2091552 ATTATAAAAAAT
1 ATTATAAAAAAT
2091564 CAAAATAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
18 11 0.41
19 6 0.22
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
ATTATAAAAAATAATAAA
Found at i:2091846 original size:25 final size:25
Alignment explanation
Indices: 2091818--2091866 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
2091808 AAAATTTTAA
2091818 AAAGAAAAAAAAATTCAAAAAAAAT
1 AAAGAAAAAAAAATTCAAAAAAAAT
* * *
2091843 AAAGGAAAAAAAATTGAAAGAAAA
1 AAAGAAAAAAAAATTCAAAAAAAA
2091867 GAGAGGAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (25 bp):
AAAGAAAAAAAAATTCAAAAAAAAT
Found at i:2091873 original size:25 final size:25
Alignment explanation
Indices: 2091818--2091873 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
2091808 AAAATTTTAA
* *
2091818 AAAGAAAAAAAAATTCAAAAAAAAT
1 AAAGGAAAAAAAATTCAAAAAAAAG
* *
2091843 AAAGGAAAAAAAATTGAAAGAAAAG
1 AAAGGAAAAAAAATTCAAAAAAAAG
*
2091868 AGAGGA
1 AAAGGA
2091874 GAGGGGCAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.73, C:0.02, G:0.16, T:0.09
Consensus pattern (25 bp):
AAAGGAAAAAAAATTCAAAAAAAAG
Found at i:2091989 original size:18 final size:19
Alignment explanation
Indices: 2091949--2091992 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
2091939 CTGTCCTTAT
* *
2091949 TTTTTAAAAAATTTTTATT
1 TTTTTAAAAAATTTTAATA
2091968 TTTTTAAAAAA-TTTAATA
1 TTTTTAAAAAATTTTAATA
2091986 TTTTTAA
1 TTTTTAA
2091993 TTGTTTTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTTAAAAAATTTTAATA
Found at i:2091989 original size:19 final size:18
Alignment explanation
Indices: 2091946--2091990 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
2091936 TTTCTGTCCT
*
2091946 TATTTTTTAAAAAATTTT
1 TATTTTTTAAAAAATTTA
2091964 TATTTTTTTAAAAAATTTAA
1 TA-TTTTTTAAAAAATTT-A
2091984 TATTTTT
1 TATTTTT
2091991 AATTGTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 20 0.83
20 2 0.08
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTTAAAAAATTTA
Found at i:2095496 original size:11 final size:11
Alignment explanation
Indices: 2095480--2095506 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
2095470 GAGAGAGAGA
2095480 AAAAAAAAAAG
1 AAAAAAAAAAG
2095491 AAAAAAAAAAG
1 AAAAAAAAAAG
2095502 AAAAA
1 AAAAA
2095507 CACTATCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:2096716 original size:18 final size:18
Alignment explanation
Indices: 2096693--2096739 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
2096683 TATATAATAT
2096693 AAATTAT-TAATAAATAAA
1 AAATTATATAA-AAATAAA
*
2096711 AAATTATATAAACAT-AA
1 AAATTATATAAAAATAAA
*
2096728 AAATTTTATAAA
1 AAATTATATAAA
2096740 CTCAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 13 0.50
18 10 0.38
19 3 0.12
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
AAATTATATAAAAATAAA
Found at i:2096739 original size:33 final size:33
Alignment explanation
Indices: 2096677--2096739 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
2096667 ATGTATTTTT
* *
2096677 AAAATTTATATAATATAAATTATTAATAAATAA
1 AAAATTTATAAAATAAAAATTATTAATAAATAA
2096710 AAAATTATATAAACATAAAAATT-TT-ATAAA
1 AAAATT-TATAAA-ATAAAAATTATTAATAAA
2096740 CTCAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
33 11 0.42
34 7 0.27
35 8 0.31
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (33 bp):
AAAATTTATAAAATAAAAATTATTAATAAATAA
Found at i:2096782 original size:24 final size:22
Alignment explanation
Indices: 2096755--2096803 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
2096745 TTATAATACG
*
2096755 ATAAATAAAATACATAATTATAAT
1 ATAAAT-AAATAAATAATTA-AAT
*
2096779 ATAAATAAATAAATTATTAAAT
1 ATAAATAAATAAATAATTAAAT
2096801 ATA
1 ATA
2096804 CTTTCCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 6 0.26
23 11 0.48
24 6 0.26
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
ATAAATAAATAAATAATTAAAT
Found at i:2097029 original size:22 final size:21
Alignment explanation
Indices: 2097003--2097053 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
2096993 ATTTTTAATA
2097003 TAATATTAAAAAATAATATATT
1 TAATATTAAAAAAT-ATATATT
*
2097025 TAATAAATAAAAAATATATATT
1 TAAT-ATTAAAAAATATATATT
2097047 T-ATATTA
1 TAATATTA
2097054 TTAACTTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 2 0.08
22 12 0.46
23 9 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TAATATTAAAAAATATATATT
Found at i:2097032 original size:16 final size:18
Alignment explanation
Indices: 2096998--2097034 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
2096988 TGATAATTTT
2096998 TAATATAATATTAAAAAA
1 TAATATAATATTAAAAAA
*
2097016 TAATAT-AT-TTAATAAA
1 TAATATAATATTAAAAAA
2097032 TAA
1 TAA
2097035 AAAATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.56
17 2 0.11
18 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TAATATAATATTAAAAAA
Found at i:2101259 original size:14 final size:14
Alignment explanation
Indices: 2101242--2101280 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
2101232 TAAATTAATC
2101242 ATAAAAAATAGATA-
1 ATAAAAAATA-ATAT
*
2101256 ATAACAAATAATAT
1 ATAAAAAATAATAT
2101270 ATAAAAAATAA
1 ATAAAAAATAA
2101281 AAAACAGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 3 0.14
14 19 0.86
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (14 bp):
ATAAAAAATAATAT
Found at i:2101598 original size:21 final size:21
Alignment explanation
Indices: 2101574--2101646 Score: 98
Period size: 21 Copynumber: 3.5 Consensus size: 21
2101564 AGCTACTAAG
2101574 ATAATATAAAAAAATATAAAT
1 ATAATATAAAAAAATATAAAT
*
2101595 ATAATAT---AAAATATAATTTT
1 ATAATATAAAAAAATATAA--AT
2101615 ATAATATAAAAAAATATAAAT
1 ATAATATAAAAAAATATAAAT
2101636 ATAATATAAAA
1 ATAATATAAAA
2101647 CATAATCTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
18 9 0.20
20 8 0.18
21 19 0.42
23 9 0.20
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATATAAAAAAATATAAAT
Found at i:2101631 original size:41 final size:41
Alignment explanation
Indices: 2101574--2101652 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
2101564 AGCTACTAAG
*
2101574 ATAATATAAAAAAATATAAATATAATATAAAATATAATTTT
1 ATAATATAAAAAAATATAAATATAATATAAAACATAATTTT
2101615 ATAATATAAAAAAATATAAATATAATATAAAACATAAT
1 ATAATATAAAAAAATATAAATATAATATAAAACATAAT
2101653 CTTACGTAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (41 bp):
ATAATATAAAAAAATATAAATATAATATAAAACATAATTTT
Found at i:2101961 original size:2 final size:2
Alignment explanation
Indices: 2101954--2101979 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2101944 TAAATTAAAA
2101954 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2101980 TGAAATTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2107365 original size:22 final size:22
Alignment explanation
Indices: 2107340--2107384 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
2107330 ATTGTGTGTG
*
2107340 TGTGTGTGTGTCTATATATATA
1 TGTGTGTGTGTATATATATATA
2107362 TGTGTGTGTGTATATATATATA
1 TGTGTGTGTGTATATATATATA
2107384 T
1 T
2107385 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (22 bp):
TGTGTGTGTGTATATATATATA
Found at i:2107365 original size:24 final size:24
Alignment explanation
Indices: 2107338--2107386 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
2107328 CTATTGTGTG
* *
2107338 TGTGTGTGTGTGTCTATATATATA
1 TGTGTGTGTGTATATATATATATA
2107362 TGTGTGTGTGTATATATATATATA
1 TGTGTGTGTGTATATATATATATA
2107386 T
1 T
2107387 ATATATATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (24 bp):
TGTGTGTGTGTATATATATATATA
Found at i:2107367 original size:20 final size:20
Alignment explanation
Indices: 2107342--2107382 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
2107332 TGTGTGTGTG
2107342 TGTGTGTGTCTATATATATA
1 TGTGTGTGTCTATATATATA
*
2107362 TGTGTGTGTGTATATATATA
1 TGTGTGTGTCTATATATATA
2107382 T
1 T
2107383 ATATATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (20 bp):
TGTGTGTGTCTATATATATA
Found at i:2112975 original size:66 final size:66
Alignment explanation
Indices: 2112869--2113000 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
2112859 AGCTAATCAG
2112869 TACACAGTGAAATTCTCTTCCCTCTGAATATATCTGTCAGGAGAAAGATGGAGTGACTATAAGAT
1 TACACAGTGAAATTCTCTTCCCTCTGAATATATCTGTCAGGAGAAAGATGGAGTGACTATAAGAT
2112934 A
66 A
2112935 TACACAGTGAAATTCTCTTCCCTCTGAATATATCTGTCAGGAGAAAGATGGAGTGACTATAAGAT
1 TACACAGTGAAATTCTCTTCCCTCTGAATATATCTGTCAGGAGAAAGATGGAGTGACTATAAGAT
2113000 A
66 A
2113001 CCTGCTGCTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (66 bp):
TACACAGTGAAATTCTCTTCCCTCTGAATATATCTGTCAGGAGAAAGATGGAGTGACTATAAGAT
A
Found at i:2114880 original size:2 final size:2
Alignment explanation
Indices: 2114867--2114902 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
2114857 TGAGTGTCGA
*
2114867 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2114903 CTGTCATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2115474 original size:2 final size:2
Alignment explanation
Indices: 2115469--2115510 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
2115459 AAGTTTTGAA
2115469 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2115511 GTAATCTTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2115963 original size:2 final size:2
Alignment explanation
Indices: 2115912--2115944 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
2115902 TTAAATTTGT
*
2115912 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2115945 CTTTAAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2116485 original size:2 final size:2
Alignment explanation
Indices: 2116478--2116521 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
2116468 TGAAATGAGT
2116478 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2116520 TA
1 TA
2116522 ATTATCAGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2125103 original size:6 final size:6
Alignment explanation
Indices: 2125087--2125128 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
2125077 AAAGAAGAAT
* * *
2125087 CCCAAA TCCAAA CCCAAA CCCAAA CCCAAA CTCAAA CTCAAA
1 CCCAAA CCCAAA CCCAAA CCCAAA CCCAAA CCCAAA CCCAAA
2125129 TCCAGACTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.50, C:0.43, G:0.00, T:0.07
Consensus pattern (6 bp):
CCCAAA
Found at i:2125137 original size:18 final size:18
Alignment explanation
Indices: 2125089--2125152 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
2125079 AGAAGAATCC
* *
2125089 CAAATCCAAACCCAAACC
1 CAAATCCAAACTCAAACT
*
2125107 CAAACCCAAACTCAAACT
1 CAAATCCAAACTCAAACT
* *
2125125 CAAATCCAGACTCAAAAT
1 CAAATCCAAACTCAAACT
*
2125143 CAAAACCAAA
1 CAAATCCAAA
2125153 ACCAAAATCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.53, C:0.36, G:0.02, T:0.09
Consensus pattern (18 bp):
CAAATCCAAACTCAAACT
Found at i:2125152 original size:12 final size:12
Alignment explanation
Indices: 2125137--2125176 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
2125127 AATCCAGACT
2125137 CAAAATCAAAAC
1 CAAAATCAAAAC
* *
2125149 CAAAACCAAAAT
1 CAAAATCAAAAC
*
2125161 CAAAATCAGAAC
1 CAAAATCAAAAC
2125173 CAAA
1 CAAA
2125177 GGCAACAATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.65, C:0.25, G:0.03, T:0.07
Consensus pattern (12 bp):
CAAAATCAAAAC
Found at i:2125158 original size:18 final size:18
Alignment explanation
Indices: 2125137--2125176 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
2125127 AATCCAGACT
2125137 CAAAATCAAAACCAAAAC
1 CAAAATCAAAACCAAAAC
* *
2125155 CAAAATCAAAATCAGAAC
1 CAAAATCAAAACCAAAAC
2125173 CAAA
1 CAAA
2125177 GGCAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.65, C:0.25, G:0.03, T:0.07
Consensus pattern (18 bp):
CAAAATCAAAACCAAAAC
Found at i:2130105 original size:2 final size:2
Alignment explanation
Indices: 2130098--2130123 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2130088 AGAAAAATAC
2130098 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2130124 TTCTCCTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2131541 original size:22 final size:24
Alignment explanation
Indices: 2131504--2131551 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
2131494 TACCAACTTA
2131504 TTAAAAAATTATTAAT-AATAATT
1 TTAAAAAATTATTAATGAATAATT
* *
2131527 TTAAAAAGTTA-TAATGATTAATT
1 TTAAAAAATTATTAATGAATAATT
2131550 TT
1 TT
2131552 TTTTTAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (24 bp):
TTAAAAAATTATTAATGAATAATT
Found at i:2131685 original size:13 final size:13
Alignment explanation
Indices: 2131667--2131693 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2131657 TCATCAATCA
2131667 ATTTTTATAATAT
1 ATTTTTATAATAT
2131680 ATTTTTATAATAT
1 ATTTTTATAATAT
2131693 A
1 A
2131694 GTACTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTTATAATAT
Found at i:2138901 original size:3 final size:3
Alignment explanation
Indices: 2138895--2138931 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
2138885 TTTCTCTTCT
2138895 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
2138932 GATGTAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:2139678 original size:22 final size:22
Alignment explanation
Indices: 2139655--2139703 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
2139645 TAATAAATTA
*
2139655 TTAAAAATTATTTTAATTAATAT
1 TTAAAAATT-TTATAATTAATAT
*
2139678 TTAAATATTTTATAATTAA-AT
1 TTAAAAATTTTATAATTAATAT
2139699 TTAAA
1 TTAAA
2139704 TAAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.29
22 9 0.38
23 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAAAAATTTTATAATTAATAT
Found at i:2140092 original size:19 final size:18
Alignment explanation
Indices: 2140057--2140136 Score: 56
Period size: 19 Copynumber: 4.2 Consensus size: 18
2140047 TTCCTTTAAT
*
2140057 TATAACATTATATATATTA
1 TATAA-ATTTTATATATTA
2140076 TATAAATTTTATCATATTA
1 TATAAATTTTAT-ATATTA
*
2140095 -ATAATTTATTATATTATT-
1 TATAAATT-TTATA-TATTA
*
2140113 TTTAATATTTTTATATAATTA
1 TATAA-A-TTTTATAT-ATTA
2140134 TAT
1 TAT
2140137 CATATTTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
18 13 0.27
19 23 0.48
20 8 0.17
21 4 0.08
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TATAAATTTTATATATTA
Found at i:2140108 original size:16 final size:19
Alignment explanation
Indices: 2140064--2140111 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 19
2140054 AATTATAACA
2140064 TTATATATATTATATAAATT
1 TTAT-TATATTATATAAATT
*
2140084 TTATCATATTA-AT-AA-T
1 TTATTATATTATATAAATT
2140100 TTATTATATTAT
1 TTATTATATTAT
2140112 TTTTAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 11 0.44
17 2 0.08
18 2 0.08
19 6 0.24
20 4 0.16
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATTATATTATATAAATT
Found at i:2144296 original size:3 final size:3
Alignment explanation
Indices: 2144290--2144324 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
2144280 GCAGTAATGC
2144290 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
2144325 ATCTGAAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:2144791 original size:23 final size:23
Alignment explanation
Indices: 2144765--2144810 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
2144755 TAAATAATTT
*
2144765 AAATATATTTAA-TTTAAACTTAA
1 AAATA-ATTTAATTTTAAAATTAA
2144788 AAATAATTTAATTTTAAAATTAA
1 AAATAATTTAATTTTAAAATTAA
2144811 TTTGAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATAATTTAATTTTAAAATTAA
Found at i:2144820 original size:17 final size:16
Alignment explanation
Indices: 2144773--2144822 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
2144763 TTAAATATAT
*
2144773 TTAATTTAAACTTAAAA
1 TTAATTT-AATTTAAAA
*
2144790 ATAATTTAATTTTAAAA
1 TTAATTTAA-TTTAAAA
2144807 TTAATTTGAATTTAAA
1 TTAATTT-AATTTAAA
2144823 TTCAAATTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 2 0.07
17 24 0.86
18 2 0.07
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (16 bp):
TTAATTTAATTTAAAA
Found at i:2145174 original size:23 final size:23
Alignment explanation
Indices: 2145142--2145186 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
2145132 AATCATTTTT
*
2145142 TTTAAAAAAACTACTTATAATAA
1 TTTAAAAAAACTAATTATAATAA
* *
2145165 TTTAATAAAACTAATTCTAATA
1 TTTAAAAAAACTAATTATAATA
2145187 CTTACTATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (23 bp):
TTTAAAAAAACTAATTATAATAA
Found at i:2145825 original size:22 final size:23
Alignment explanation
Indices: 2145793--2145836 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
2145783 TTTATTTATA
*
2145793 TTTAATTATAT-ATAAATAATAT
1 TTTAATAATATAATAAATAATAT
2145815 TTTAATAATATAATAAATAATA
1 TTTAATAATATAATAAATAATA
2145837 AAAAATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTAATAATATAATAAATAATAT
Found at i:2145876 original size:22 final size:24
Alignment explanation
Indices: 2145828--2145878 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
2145818 AATAATATAA
2145828 TAAATAATAAAAAATTAATTTAATT
1 TAAATAATAAAAAATTAATTT-ATT
* *
2145853 TAAATATTAAAATA-TAATTT-TT
1 TAAATAATAAAAAATTAATTTATT
2145875 TAAA
1 TAAA
2145879 CTAAAGAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.25
24 6 0.25
25 12 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAATAATAAAAAATTAATTTATT
Found at i:2146903 original size:2 final size:2
Alignment explanation
Indices: 2146896--2146927 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2146886 ATTTGATAGA
2146896 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2146928 TCATTTCAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2154522 original size:16 final size:16
Alignment explanation
Indices: 2154466--2154523 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
2154456 TTAATTAAAA
*
2154466 AAATTAAAAATAATTC
1 AAATTAAAAATAATTT
*
2154482 AAA-TAAAAAAAATTT
1 AAATTAAAAATAATTT
* *
2154497 AAAATCAAAATAATTT
1 AAATTAAAAATAATTT
*
2154513 AAATTTAAAAT
1 AAATTAAAAAT
2154524 TCAAATTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 13 0.37
16 22 0.63
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATTAAAAATAATTT
Found at i:2154529 original size:22 final size:22
Alignment explanation
Indices: 2154477--2154529 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
2154467 AATTAAAAAT
2154477 AATTCAAATAAAAAAAATTTAA
1 AATTCAAATAAAAAAAATTTAA
***
2154499 AA-TCAAAATAATTTAAATTTAA
1 AATTC-AAATAAAAAAAATTTAA
2154521 AATTCAAAT
1 AATTCAAAT
2154530 TTAACAAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (22 bp):
AATTCAAATAAAAAAAATTTAA
Found at i:2156640 original size:31 final size:32
Alignment explanation
Indices: 2156604--2156684 Score: 80
Period size: 32 Copynumber: 2.6 Consensus size: 32
2156594 CGATGGTCTA
**
2156604 TTTTATTATTTAAATAATATTAAAAT-ATTAT
1 TTTTATTATTTAAATAATATTAAAATAAAAAT
* *
2156635 TTTTA-TATTAATAATTAA-ATTTAAATAAAAAT
1 TTTTATTATT--TAAATAATATTAAAATAAAAAT
2156667 TTTTATTA-TTAAATAATA
1 TTTTATTATTTAAATAATA
2156685 ATTTAAACTT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
30 10 0.25
31 13 0.32
32 15 0.38
33 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (32 bp):
TTTTATTATTTAAATAATATTAAAATAAAAAT
Found at i:2158600 original size:20 final size:19
Alignment explanation
Indices: 2158549--2158600 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 19
2158539 TCATATCGTG
2158549 TTATATTA-TTTTTTTATA
1 TTATATTATTTTTTTTATA
2158567 TTATATTTTAATTTTTTTTATA
1 TTATA--TT-ATTTTTTTTATA
2158589 TTATATTCATTT
1 TTATATT-ATTT
2158601 AGTATAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 5 0.17
20 8 0.28
21 1 0.03
22 15 0.52
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTATATTATTTTTTTTATA
Found at i:2159130 original size:4 final size:4
Alignment explanation
Indices: 2159121--2159154 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
2159111 GGGGACTCAC
2159121 AATA AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
2159155 AATTTGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:2159733 original size:23 final size:23
Alignment explanation
Indices: 2159656--2159734 Score: 58
Period size: 25 Copynumber: 3.3 Consensus size: 23
2159646 TACGATTATA
2159656 AAATATAAATAATAAAAA-ATATTGT
1 AAATATAAA-AATAAAAATATA-T-T
* *
2159681 ATAATAT-AAAAT--AAATTTATA
1 A-AATATAAAAATAAAAATATATT
2159702 AAATGTATAAAAATAAAAATATATT
1 AAA--TATAAAAATAAAAATATATT
2159727 AAATATAA
1 AAATATAA
2159735 TTATAATAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 16
0.68 0.06 0.25
Matches are distributed among these distances:
20 2 0.05
21 1 0.02
22 7 0.16
23 12 0.28
24 3 0.07
25 13 0.30
26 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (23 bp):
AAATATAAAAATAAAAATATATT
Found at i:2160340 original size:14 final size:15
Alignment explanation
Indices: 2160321--2160354 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
2160311 ATTTGGTTCA
2160321 TAAATAAATTTAA-T
1 TAAATAAATTTAAGT
2160335 TAAATAAATTTAAGT
1 TAAATAAATTTAAGT
2160350 TAAAT
1 TAAAT
2160355 TTTATTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
TAAATAAATTTAAGT
Found at i:2160446 original size:21 final size:22
Alignment explanation
Indices: 2160415--2160457 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
2160405 AAATATTATA
*
2160415 TTAATAAATAAATATAAATTTT
1 TTAATAAATAAATAAAAATTTT
2160437 TTAA-AAATAAATAAAAATTTT
1 TTAATAAATAAATAAAAATTTT
2160458 ATTTACTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TTAATAAATAAATAAAAATTTT
Found at i:2161241 original size:12 final size:12
Alignment explanation
Indices: 2161226--2161250 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2161216 TATAAATTAA
2161226 TTAAATTTAATT
1 TTAAATTTAATT
2161238 TTAAATTTAATT
1 TTAAATTTAATT
2161250 T
1 T
2161251 CGATTTGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTAAATTTAATT
Found at i:2161539 original size:2 final size:2
Alignment explanation
Indices: 2161532--2161557 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2161522 TTCACCTGAA
2161532 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2161558 CAAAACAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2163687 original size:14 final size:16
Alignment explanation
Indices: 2163657--2163697 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
2163647 AAAATATAAT
2163657 AATAACAAATAATTTA
1 AATAACAAATAATTTA
2163673 AATAA-AAAT-ATTTA
1 AATAACAAATAATTTA
*
2163687 AA-AATAAATAA
1 AATAACAAATAA
2163698 ATTTTAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.09
14 11 0.48
15 5 0.22
16 5 0.22
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAACAAATAATTTA
Found at i:2163712 original size:16 final size:17
Alignment explanation
Indices: 2163672--2163712 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
2163662 CAAATAATTT
2163672 AAATAA-AAATATTTAA
1 AAATAATAAATATTTAA
2163688 AAATAAATAAAT-TTTAA
1 AAAT-AATAAATATTTAA
*
2163705 ACATAATA
1 AAATAATA
2163713 TTTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.36
17 10 0.45
18 4 0.18
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATAATAAATATTTAA
Found at i:2164344 original size:17 final size:17
Alignment explanation
Indices: 2164322--2164386 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 17
2164312 ATTTATGTTT
2164322 AAATTAATAAAAAACTA
1 AAATTAATAAAAAACTA
2164339 AAATTACAATAAAAAACTA
1 AAATT--AATAAAAAACTA
* *
2164358 AAATT-TTAAAAATATTAA
1 AAATTAATAAAAA-ACT-A
2164376 AAATTAATAAA
1 AAATTAATAAA
2164387 TCAAATCGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 6 0.15
17 7 0.17
18 6 0.15
19 21 0.52
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (17 bp):
AAATTAATAAAAAACTA
Found at i:2165256 original size:24 final size:23
Alignment explanation
Indices: 2165216--2165294 Score: 63
Period size: 24 Copynumber: 3.3 Consensus size: 23
2165206 ATAAATAAGA
* *
2165216 TTAATTTTTATTAATTCAATCT-TT
1 TTAAATTTCATTAATTC--TCTATT
2165240 TTAAA-TTCATTAGATTCTCTATT
1 TTAAATTTCATTA-ATTCTCTATT
* **
2165263 TTAAATTTCATTAAATTTTAAATT
1 TTAAATTTCATT-AATTCTCTATT
2165287 TTAAATTT
1 TTAAATTT
2165295 TTAATTTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
22 3 0.07
23 13 0.28
24 29 0.63
25 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (23 bp):
TTAAATTTCATTAATTCTCTATT
Found at i:2165264 original size:23 final size:23
Alignment explanation
Indices: 2165238--2165293 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
2165228 AATTCAATCT
* **
2165238 TTTTAAATTCATTAGATTCTCTA
1 TTTTAAATTCATTAAATTCTAAA
*
2165261 TTTTAAATTTCATTAAATTTTAAA
1 TTTTAAA-TTCATTAAATTCTAAA
2165285 TTTTAAATT
1 TTTTAAATT
2165294 TTTAATTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (23 bp):
TTTTAAATTCATTAAATTCTAAA
Found at i:2166241 original size:3 final size:3
Alignment explanation
Indices: 2166233--2166273 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
2166223 GATAAAAGTT
2166233 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
2166274 GATGAAACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:2169227 original size:2 final size:2
Alignment explanation
Indices: 2169220--2169249 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2169210 AGTTTTTAAA
2169220 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
2169250 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:2169254 original size:2 final size:2
Alignment explanation
Indices: 2169249--2169276 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2169239 TCTCTCTCTC
2169249 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2169277 AACTATACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2169632 original size:3 final size:3
Alignment explanation
Indices: 2169624--2169655 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
2169614 AGCTTTCATT
2169624 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
2169656 TAATAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:2169660 original size:3 final size:3
Alignment explanation
Indices: 2169654--2169694 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
2169644 CAACAACAAC
2169654 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
2169695 AGAGCAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:2169993 original size:15 final size:15
Alignment explanation
Indices: 2169973--2170002 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2169963 TTTAAAATTT
2169973 TTAAATATATCTATA
1 TTAAATATATCTATA
*
2169988 TTAAATATATTTATA
1 TTAAATATATCTATA
2170003 CAGTATACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAATATATCTATA
Found at i:2174000 original size:11 final size:11
Alignment explanation
Indices: 2173984--2174008 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2173974 AGAAAACTAT
2173984 ATAAAATAAAA
1 ATAAAATAAAA
2173995 ATAAAATAAAA
1 ATAAAATAAAA
2174006 ATA
1 ATA
2174009 TATATCTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:2175191 original size:28 final size:27
Alignment explanation
Indices: 2175138--2175199 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
2175128 AATTTTAATA
2175138 TTTTTATATTCATATCTTATTCATATGAT
1 TTTTTATATTCATATCTTATTCATAT--T
*
2175167 TTTTTATATT-ATATTTTAATT-ATATT
1 TTTTTATATTCATATCTT-ATTCATATT
2175193 TTTTTAT
1 TTTTTAT
2175200 TGAATTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 8 0.26
28 10 0.32
29 13 0.42
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (27 bp):
TTTTTATATTCATATCTTATTCATATT
Found at i:2175685 original size:2 final size:2
Alignment explanation
Indices: 2175678--2175717 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
2175668 TCATGTAATC
2175678 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2175718 TAGAGTCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2180368 original size:2 final size:2
Alignment explanation
Indices: 2180361--2180395 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2180351 CAATTACTCA
2180361 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2180396 GAGAGAGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2180400 original size:2 final size:2
Alignment explanation
Indices: 2180395--2180423 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2180385 ATATATATAT
2180395 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2180424 TAACAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2181589 original size:21 final size:21
Alignment explanation
Indices: 2181563--2181613 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
2181553 AAAATATTTT
2181563 TATTATATAATATAAATGAT-A
1 TATTATATAATATAAAT-ATAA
*
2181584 TATTATATTATATAAATATAA
1 TATTATATAATATAAATATAA
*
2181605 TTTTATATA
1 TATTATATA
2181614 TATTATATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTATATAATATAAATATAA
Found at i:2181707 original size:17 final size:16
Alignment explanation
Indices: 2181687--2181746 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
2181677 ATCAACTTTA
*
2181687 AAATTTTATAATCAATT
1 AAATTTTA-AATAAATT
2181704 AAATTAATTAAATAAATT
1 AAATT--TTAAATAAATT
*
2181722 AAATTTTAAAATTAATT
1 AAATTTT-AAATAAATT
2181739 -AATTTTAA
1 AAATTTTAA
2181747 TAACTAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 2 0.05
16 8 0.21
17 13 0.34
18 12 0.32
19 3 0.08
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATTTTAAATAAATT
Found at i:2181710 original size:5 final size:5
Alignment explanation
Indices: 2181700--2181782 Score: 54
Period size: 5 Copynumber: 17.2 Consensus size: 5
2181690 TTTTATAATC
* *
2181700 AATTA AATT- AATTA AA-TA AATTA AATTTTAA AATT- AATTA ATTTT
1 AATTA AATTA AATTA AATTA AATTA AA--TT-A AATTA AATTA AATTA
*
2181745 AA-T- AACTA AA-TA AATTA AATTA AATT- AATTAA AATTA A
1 AATTA AATTA AATTA AATTA AATTA AATTA AATT-A AATTA A
2181783 TTGATTTGAT
Statistics
Matches: 64, Mismatches: 3, Indels: 22
0.72 0.03 0.25
Matches are distributed among these distances:
3 2 0.03
4 22 0.34
5 29 0.45
6 6 0.09
7 2 0.03
8 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (5 bp):
AATTA
Found at i:2181714 original size:9 final size:9
Alignment explanation
Indices: 2181700--2181784 Score: 70
Period size: 9 Copynumber: 9.4 Consensus size: 9
2181690 TTTTATAATC
2181700 AATTAAATT
1 AATTAAATT
*
2181709 AATTAAATA
1 AATTAAATT
2181718 AATTAAATT
1 AATTAAATT
2181727 --TTAAAATT
1 AATT-AAATT
*
2181735 AATTAATTTT
1 AATTAA-ATT
*
2181745 AA-T-AACT
1 AATTAAATT
*
2181752 AAATAAATT
1 AATTAAATT
2181761 AAATTAAATT
1 -AATTAAATT
2181771 AATTAAAATT
1 AATT-AAATT
2181781 AATT
1 AATT
2181785 GATTTGATCA
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
7 5 0.08
8 7 0.11
9 26 0.43
10 23 0.38
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (9 bp):
AATTAAATT
Found at i:2181726 original size:35 final size:37
Alignment explanation
Indices: 2181687--2181765 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 37
2181677 ATCAACTTTA
*
2181687 AAATTTTATAATCAATTAA-ATTAAT-TAAATAAATT
1 AAATTTTAAAATCAATTAATATTAATATAAATAAATT
* *
2181722 AAATTTTAAAATTAATTAATTTTAATAACTAAATAAATT
1 AAATTTTAAAATCAATTAATATTAAT-A-TAAATAAATT
2181761 AAATT
1 AAATT
2181766 AAATTAATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 17 0.46
36 5 0.14
39 15 0.41
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (37 bp):
AAATTTTAAAATCAATTAATATTAATATAAATAAATT
Done.